Psyllid ID: psy12061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
Protein Sequence
YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYIFVAFS
Secondary Structure (PSIPRED)
cccccccEEEEcccccccccEEEEEEccEEccccccEEEcccccEEEccccccccEEEEEEEEEccccEEEEEEEEEEEcccEEEcccccEEEEccccEEEEEEEEEEccccEEEEEEEccEEEcccccccccccEEEEcccEEEEccccccccEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEEccEEEEEEEccccccccccEEEEEEEEccccccEEEEEEcccEEEEEEcccEEEEEEEcccccccEEEEEEEEccccccccccccccEEccccccccccccEEEEEccccEEEEEEEEccccccccccEEEEEEEEEcccccccEEEEEEEccEEEEEEEccccccccEEEEEEEEEcccccccccccEEEEccccccccccccEEEEEEEccEEEEEEEccccccccccEEEEEEEEEEEEcccccccEEEEEccccccEEEEcccccccEEEEEEEEEcccccccccccEEEEEcccccccccccEEEEEEcccEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEcccccEEEEEEcccccccEEEEEEEEEcccccccccccEEEEEccccccccccccEEEEcccEEEEEEcccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccccEEEEEEcccEccccccEEEEcccEEEEEcccHccccEEEEEEEEcccEEEEEEEEEEEccccccccccccEEEEcccEEEEEEEccccccccEEEEEEEccEEccccccccEEEEEEEccccEEEEEEcccccccEEEEEEEEccccccccEEEEEccccccccccccccccccEEEEEEcccccccccEEEEEEEEccccccEEEEccccccccccEEEcccccEEEEEcccccEEEEEEEEEEEccEEcccccccccEEEccccccccccccEEEccccccEEEEcccccHHHccccccEEEEEEEEccccccccEEEEcccccccEEEEEEcccccccEEEEEEEEEccccccccccEEEEEcccccccccccEEEEEccccEEEEEEcccccccccccccEEEEEEEEEEcccccccEEEEEccccccEEEEEccccccEEEEEEEEEEccccccccccEEEEccccccccccccEEEEEccccEEEEEEcccccccccccEEEEEEEEEEcccccccEEEEEEcccccEEEEEEccccccEEEEEEEEEcccccccccccEEEEccccccccccccEEEEEcccEEEEEEEccEEEEEEcc
Coil and Loop (DISEMBL)
yageggnvtifcnpeaapkpkfvwkkdgniigsggrrkifengnllispvsrddsgiysctatnvhgmdeskgrlivlhgpsyyeqlppkiTIAAHRNLQLRCSAHTEELLDVAYIWTHNgvrignmdlneletpninidgglleitnasfadageYECVVKSTvgkistkttvivegppglpggvQVVEVHKTSAtiqwtdgatngrpitHYKIIARtnwnstwfnvsehvigkevdrytgrkeasienvlvpwstyEFKVIAgnelgygepsspspqyntpadkpyqapsrigggggkigdlsisweplprekqnapniYYKIFWRKKNDTEFQSETLKEYGNVGiavvripsefyytEYEVKVQAindvgpgpesevvtifsaedmpqvapqgvfsrgfnstainvtwnpIELIRENIRGRLIGHRIKywkednpeeTAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYnnagegpeserYLERTyrkapqkppsavhikginpttVHVTWryvspsfeeepiigyKVRVWEVdqdmsrandtiipvgntldadivdlspgkryhMRVLAFsnggdgrmsspaitfqmgeekefksgspalysASTTLLLVMSSTLYIFVAFS
Flexible Loop (DISEMBL)
yageggnvtifcnpeaapkpkfvwKKDGNIIGsggrrkifengnllispvsrddsgIYSCTAtnvhgmdesKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTvgkistkttvivegppglpGGVQVVEVHKTSatiqwtdgatngrPITHYKIIARTNWNSTWFNVSEHVIgkevdrytgrkeasienvlvpwstYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISweplprekqnapNIYYKIFWRKKNDTEFQSETLkeygnvgiAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHrikywkednpeETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNnagegpesERYLERTYRKapqkppsavhikginpttvHVTWRYVSpsfeeepiigYKVRVWEVDQDMSRAndtiipvgntldaDIVDLSPGKRYHMRVLAfsnggdgrmSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYIFVAFS
Low Complexity Region (SEG)
YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTvivegppglpggvqvvevHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRigggggkigDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYsasttlllvmsstlYIFVAFS
Disordered region (IsUnstruct)
*******VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL**************************************************PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN*************************VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS****************************LYSASTTLLLVMSSTLYIFVAF*
Disordered Region (DISOPRED)
YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ**********RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET*NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS***************************DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED************TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE**************VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM************************ASTTLLLVMSSTLYIFVAFS
Disordered Region (DISEMBL)
YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG**************KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE*********************AVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYIFVAFS
Disordered Region (DISPRO)
****GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYIFVAFS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYIFVAFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	626	2.2.26 [Sep-21-2011]
Q9VN14	1390	Contactin OS=Drosophila m	yes	N/A	0.940	0.423	0.610	0.0
Q8IWV2	1026	Contactin-4 OS=Homo sapie	yes	N/A	0.945	0.576	0.313	1e-75
Q62845	1026	Contactin-4 OS=Rattus nor	yes	N/A	0.947	0.577	0.315	3e-75
Q69Z26	1026	Contactin-4 OS=Mus muscul	yes	N/A	0.947	0.577	0.312	3e-75
Q62682	1028	Contactin-3 OS=Rattus nor	no	N/A	0.897	0.546	0.325	2e-74
P97528	1028	Contactin-6 OS=Rattus nor	no	N/A	0.944	0.574	0.312	3e-72
Q07409	1028	Contactin-3 OS=Mus muscul	no	N/A	0.897	0.546	0.317	8e-72
P97527	1099	Contactin-5 OS=Rattus nor	no	N/A	0.940	0.535	0.314	9e-72
Q9UQ52	1028	Contactin-6 OS=Homo sapie	no	N/A	0.889	0.541	0.316	1e-71
Q90W79	1027	Contactin-5 OS=Gallus gal	no	N/A	0.900	0.549	0.334	1e-71

>sp|Q9VN14|CONT_DROME Contactin OS=Drosophila melanogaster GN=Cont PE=1 SV=2

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/593 (61%), Positives = 445/593 (75%), Gaps = 4/593 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA   GN TI C+PEAAP+PKF WKKDG +IGSGG R+I  +G L ISP SRDD GIY+C
Sbjct: 768  YAVYNGNTTIVCDPEAAPRPKFQWKKDGQVIGSGGHRRILPSGTLTISPTSRDDEGIYTC 827

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
             A+N  G DES  R+IVL    + E  P +I    H  + L C A  +ELLD+AY+W HN
Sbjct: 828  IASNQAGTDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHN 887

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G  + N   N   T  I +D   L + N S  DAG+YECVVKS V +IS+KT+V +EG P
Sbjct: 888  GEVLKN---NHDGTGRIIVDWNRLTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAP 944

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQV+++ KT A I+W DG+ NGR I +Y I+ RTNWN TW NVS HV  +EVDRY
Sbjct: 945  GAPGGVQVIQISKTKAIIEWVDGSHNGRAIRYYNILGRTNWNRTWVNVSTHVQAREVDRY 1004

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
            T R++A + N L PWS YEF V A N+LG G PS+PSP Y+T  DKPY AP  +GGGGGK
Sbjct: 1005 TSRQQAEVVN-LTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGK 1063

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
            IGDL+I+W+PL  ++Q++  I+YK+FW+ K   E+ S+ +K+  ++G+AVV IP   YYT
Sbjct: 1064 IGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLNNYYT 1123

Query: 361  EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
            EYEVKVQAIN VG GPESE+  I SAEDMPQVAPQ   +  +NST  NVTW PI++ REN
Sbjct: 1124 EYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSREN 1183

Query: 421  IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
            IRG+LIGHR+KYWK  + EE +VYYLSRTTRNWALIVGLQPDT Y+VKVMAYN AGEGPE
Sbjct: 1184 IRGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWALIVGLQPDTYYFVKVMAYNAAGEGPE 1243

Query: 481  SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
            SER+ ERTYRKAPQKPPS+VH+ GINP+TV V WRYVSPS +EEP+ GYKVR+WE DQ+M
Sbjct: 1244 SERFEERTYRKAPQKPPSSVHVYGINPSTVRVVWRYVSPSQDEEPVEGYKVRIWESDQNM 1303

Query: 541  SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
              AN+TI+P+G  L++ I +L+PGK Y+MRVLA+SNGGDGRMSSP + FQMG+
Sbjct: 1304 ITANNTIVPIGQKLESYINNLTPGKSYNMRVLAYSNGGDGRMSSPTLHFQMGK 1356

Required for organization of septate junctions and paracellular barrier functions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion.
Drosophila melanogaster (taxid: 7227)

>sp|Q8IWV2|CNTN4_HUMAN Contactin-4 OS=Homo sapiens GN=CNTN4 PE=1 SV=1

 Score =  285 bits (728), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 195/622 (31%), Positives = 297/622 (47%), Gaps = 30/622 (4%)

Query: 5    GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
            GG V I C P+A+PKP + WKK  +I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct: 422  GGEVVIECKPKASPKPVYTWKKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATN 481

Query: 65   VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
              G   S G L+V   P+     P  + +    ++ L C    +  LD+ + W+ NG  I
Sbjct: 482  HFGTASSTGNLVV-KDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLI 540

Query: 125  G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
              + D +  E        G L I N     AG+Y C+V+++V ++S    +IV GPPG P
Sbjct: 541  DFDRDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPP 600

Query: 184  GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
              V + E+  T+A + W  G  N  PIT Y I ART ++  W  VS   + + +D   G+
Sbjct: 601  EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVS--TVPELID---GK 655

Query: 244  KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
               +    L PW  YEF+ +A N +G GEPS PS +  T    P   P+ + GGGG   +
Sbjct: 656  TFTATVVGLNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 715

Query: 304  LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
            L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct: 716  LVITWETVPEELQNGRGFGYVVAFRPYGKMIWMLTVLAS-ADASRYVFRNESVHPFSPFE 774

Query: 364  VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIR 422
            VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W +P+    E  R
Sbjct: 775  VKVGVFNNKGEGPFSPTTVVYSAEEEPTKPPASIFARSLSATDIEVFWASPL----EKNR 830

Query: 423  GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
            GR+ G+ +KYW+ ++ EE A    +   +    I  L+    Y++ V AYN+AG GP S 
Sbjct: 831  GRIQGYEVKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSA 890

Query: 483  RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS 541
                 T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S
Sbjct: 891  TVNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTS 949

Query: 542  --RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS----PAITFQMGEEK 595
                N T + +    D D         Y + +  FS+GGDG  S     P I+       
Sbjct: 950  VIETNKTSVELSLPFDED---------YIIEIKPFSDGGDGSSSEQIRIPKISNAYARGS 1000

Query: 596  EFKSGSPALYSASTTLLLVMSS 617
               + +    SA +T+++ +++
Sbjct: 1001 GASTSNACTLSAISTIMISLTA 1022

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis.

Homo sapiens (taxid: 9606)

>sp|Q62845|CNTN4_RAT Contactin-4 OS=Rattus norvegicus GN=Cntn4 PE=1 SV=1

 Score =  283 bits (724), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 196/621 (31%), Positives = 296/621 (47%), Gaps = 28/621 (4%)

Query: 5    GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
            GG V I C P+A+P+P + W+K   I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct: 422  GGEVVIECKPKASPRPVYTWRKGREILRENERITISEDGNLRIINVTKSDAGSYTCIATN 481

Query: 65   VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
              G   S G ++V   P+     P  + +    ++ L C    +  LD+ + WT NG  I
Sbjct: 482  HFGTASSTGNVVV-KDPTKVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLI 540

Query: 125  G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
              + D +  E        G L I N     AG+Y C+V+++V K+S    +IV GPPG P
Sbjct: 541  DFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPPGPP 600

Query: 184  GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
              V + E+  T+A + W  G  N  PIT Y I ART ++  W  VS   + + VD   G+
Sbjct: 601  EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVS--TVPELVD---GK 655

Query: 244  KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
               +    L PW  YEF+ +A N +G GEPS PS +  T    P   P+ + GGGG   +
Sbjct: 656  TFTATVVGLNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 715

Query: 304  LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
            L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct: 716  LVITWETVPEELQNGRGFGYVVAFRPHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFE 774

Query: 364  VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
            VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W     I +N RG
Sbjct: 775  VKVGVFNNKGEGPFSPTTLVYSAEEEPTKPPASIFARSLSATDIEVFW--ASPIGKN-RG 831

Query: 424  RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
            R+ G+ +KYW+ D+ EE A    +   +    I  L+ +  Y++ V AYN+AG GP S  
Sbjct: 832  RIQGYEVKYWRHDDKEENARKIRTVGNQTSTKITNLKGNALYHLSVKAYNSAGTGPSSAA 891

Query: 484  YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS- 541
                T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S 
Sbjct: 892  VNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTSV 950

Query: 542  -RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS----PAITFQMGEEKE 596
               N T + +    D D         Y + +  FS+GGDG  S     P I+        
Sbjct: 951  IETNKTSVELSLPFDED---------YIIEIKPFSDGGDGSSSEQIRIPKISNSYARGSG 1001

Query: 597  FKSGSPALYSASTTLLLVMSS 617
              + +    SA +T+++ +++
Sbjct: 1002 ASTSNACTLSAISTIMISLTA 1022

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q69Z26|CNTN4_MOUSE Contactin-4 OS=Mus musculus GN=Cntn4 PE=2 SV=2

 Score =  283 bits (724), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 194/621 (31%), Positives = 291/621 (46%), Gaps = 28/621 (4%)

Query: 5    GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
            GG V I C P+A+P+P + W+K   I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct: 422  GGEVVIECKPKASPRPVYTWRKGREILRENERITISEDGNLRIINVTKSDAGSYTCIATN 481

Query: 65   VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
              G   S G +IV   P+     P  + +    ++ L C    +  LD+ + WT NG  I
Sbjct: 482  HFGTASSTGNVIV-KDPTKVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLI 540

Query: 125  G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
              + D +  E        G L I N     AG+Y C+V+++V K+S    +IV GPPG P
Sbjct: 541  DFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDKLSVAADLIVRGPPGPP 600

Query: 184  GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
              V + E+  T+A + W  G  N  PIT Y I ART ++  W       +    D   G+
Sbjct: 601  EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGW-----QAVNTVPDLVDGK 655

Query: 244  KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
               +    L PW  YEF+ +A N +G GEPS PS +  T    P   P+ + GGGG   +
Sbjct: 656  TFTATVVGLNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 715

Query: 304  LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
            L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct: 716  LVITWETVPEELQNGRGFGYVVAFRPHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFE 774

Query: 364  VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
            VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W     I +N RG
Sbjct: 775  VKVGVFNNKGEGPFSPTTLVYSAEEEPTKPPASIFARSLSATDIEVFW--ASPIGKN-RG 831

Query: 424  RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
            R+ G+ +KYW+ D+ EE A    +   +    I  L+    Y++ V AYN+AG GP S  
Sbjct: 832  RIQGYEVKYWRHDDKEENAKKIRTVGNQTSTKITNLKGSALYHLSVKAYNSAGTGPSSAT 891

Query: 484  YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS- 541
                T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S 
Sbjct: 892  VNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTSV 950

Query: 542  -RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS----PAITFQMGEEKE 596
               N T + +    D D         Y + +  FS+GGDG  S     P I+        
Sbjct: 951  IETNKTSVELSLPFDED---------YIIEIKPFSDGGDGSSSEQIRIPKISNSYARGSG 1001

Query: 597  FKSGSPALYSASTTLLLVMSS 617
              + +    SA +T+++ +++
Sbjct: 1002 ASTSNACTLSAISTIMISLTA 1022

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis.

Mus musculus (taxid: 10090)

>sp|Q62682|CNTN3_RAT Contactin-3 OS=Rattus norvegicus GN=Cntn3 PE=1 SV=1

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 189/580 (32%), Positives = 285/580 (49%), Gaps = 18/580 (3%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
           G  V + C P A+P+    WKK   ++    R  +  +G L I  V++ D+GIY+C A N
Sbjct: 424 GSLVILDCKPSASPRALSFWKKGDTVVREQARISLLNDGGLKIMNVTKADAGIYTCIAEN 483

Query: 65  VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
             G      +L+V   P+     P  + +A   ++ L C    + LLD+ + W  NG   
Sbjct: 484 QFGKANGTTQLVVTE-PTRIILAPSNMDVAVGESIILPCQVQHDPLLDIMFAWYFNGTLT 542

Query: 125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
               D +  E    +  G L+ I N     +G+Y C+V++ V  +S+   +IV G PG P
Sbjct: 543 DFKKDGSHFEKVGGSSSGDLM-IRNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPP 601

Query: 184 GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
             V+V E+  T+A + WT+G  +  P+  Y + ART ++  W NV    + + +D  T R
Sbjct: 602 ENVKVDEITDTTAQLSWTEGTDSHSPVISYAVQARTPFSVGWQNV--RTVPEAIDGKT-R 658

Query: 244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
               +E  L PW  YEF+V+A N++G GEPS PS +  T    P  APS + GGGG   +
Sbjct: 659 TATVVE--LNPWVEYEFRVVASNKIGGGEPSLPSEKVRTEEAAPEVAPSEVSGGGGSRSE 716

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           L I+W+P+P E QN     Y + +R    T +    +    N    V R  S   ++ YE
Sbjct: 717 LVITWDPVPEELQNGGGFGYVVAFRPLGVTTWIQTVVTSPDNPRY-VFRNESIVPFSPYE 775

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
           VKV   N+ G GP S V T+FSAE+ P VAP  + +   +S+ I V+WN I     N  G
Sbjct: 776 VKVGVYNNKGEGPFSPVTTVFSAEEEPTVAPSHISAHSLSSSEIEVSWNTIPWKSSN--G 833

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
           RL+G+ ++YW     EE++        +  A++ GL+ +  YY  V AYN AG GP S  
Sbjct: 834 RLLGYEVRYWNNGGEEESSSKVKVAGNQTSAVLRGLKSNLAYYTAVRAYNTAGAGPFSAT 893

Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA 543
               T +  P +PP  V +     T V + W  V     E  + GYKV      Q+  + 
Sbjct: 894 VNATTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKALENESEVTGYKVFYRTSSQNNVQV 952

Query: 544 NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
            +T     N   A+++ L   + Y + V A ++GGDG  S
Sbjct: 953 LNT-----NKTSAELL-LPIKEDYIIEVKATTDGGDGTSS 986

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity.

Rattus norvegicus (taxid: 10116)

>sp|P97528|CNTN6_RAT Contactin-6 OS=Rattus norvegicus GN=Cntn6 PE=1 SV=1

 Score =  273 bits (697), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 196/627 (31%), Positives = 300/627 (47%), Gaps = 36/627 (5%)

Query: 5    GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
            GG+++I C P A PK    WK+    +    R    E+G+L I  V+R D+G Y+C ATN
Sbjct: 424  GGDISIECKPNAFPKASISWKRGTENLKQSKRVFFLEDGSLKICNVTRSDAGSYTCVATN 483

Query: 65   VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
              G  +S G LIV    +     P K+ +    ++ L C    +  ++V ++W  NG  I
Sbjct: 484  QFGNGKSSGSLIVKER-TVITVPPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDVI 542

Query: 125  GNMDLNELETPNINIDG---GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
               DL +       I G   G L I N     +G+Y C V++T+ ++S    +IV GPPG
Sbjct: 543  ---DLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPG 599

Query: 182  LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYT 241
             P  V+V  +  T++ + W  G  N  PI  + I  RT ++  W       +    +   
Sbjct: 600  PPEDVKVEHISSTTSQLSWRPGPDNNSPIQIFTIQTRTPFSVGW-----QAVATVPEILN 654

Query: 242  GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKI 301
            G+   +    L PW  YEF+V+AGN +G GEPS PS    T A  P  AP  I GGGG  
Sbjct: 655  GQTYNATVIGLSPWVEYEFRVVAGNNIGIGEPSKPSELLRTKASIPNVAPVNINGGGGSR 714

Query: 302  GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
             +L I+WEP+P E QN     Y I +R    T +  E +    +    + R  S    + 
Sbjct: 715  SELVITWEPIPEELQNGEGFGYIIMFRPVGSTTWMKEKVALVESSKF-IYRNESIMPLSP 773

Query: 362  YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
            +EVKV   N+ G G  S V  ++S ED P++AP+G   + F+++ + V+WN I   R   
Sbjct: 774  FEVKVGVYNNEGEGSLSTVSIVYSGEDEPRLAPRGTSVQSFSASDMEVSWNAIAWNRNT- 832

Query: 422  RGRLIGHRIKYWKEDNPEETAVYYL----SRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
             GR++G+ + YW  DN +E+ +  +    + TT+N   I GL+ +T Y+  V AYN AG 
Sbjct: 833  -GRVLGYEVLYWT-DNSKESMIGKIRVSGNVTTKN---ITGLRANTIYFASVRAYNTAGT 887

Query: 478  GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD 537
            GP S      T +  P +PP+ +  K  N + + + W +V     E  ++GYK+   +  
Sbjct: 888  GPSSPPVNVTTKKSPPSQPPANIAWKLSN-SKLCLNWEHVKTMENESEVLGYKILYRQNR 946

Query: 538  QDMSRANDTIIPVGNTLDADIVDLSPGKR-YHMRVLAFSNGGDGRMSSPAITFQMGEEKE 596
            Q  +   +T     N   A++  L P +  Y + +   S+GGDG  S      ++ +   
Sbjct: 947  QSKTHVLET-----NNTSAEL--LVPFEEDYLIEIRTVSDGGDGSSSE---EIRIPKMSS 996

Query: 597  FKSGSPALYSASTTLLLVMSSTLYIFV 623
              S    +   ST   L M    Y FV
Sbjct: 997  LSSVGVQILKPSTQ-FLTMVGFFYCFV 1022

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. May be involved in motor coordination.

Rattus norvegicus (taxid: 10116)

>sp|Q07409|CNTN3_MOUSE Contactin-3 OS=Mus musculus GN=Cntn3 PE=2 SV=2

 Score =  271 bits (694), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 184/580 (31%), Positives = 281/580 (48%), Gaps = 18/580 (3%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
           G  V + C P A+P+    WKK   ++    R     +G L I  V++ D+G Y+CTA N
Sbjct: 424 GSLVILDCKPRASPRALSFWKKGDMMVREQARVSFLNDGGLKIMNVTKADAGTYTCTAEN 483

Query: 65  VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
             G       L+V   P+     P  + +A   ++ L C    + LLD+ + W  NG   
Sbjct: 484 QFGKANGTTHLVVTE-PTRIILAPSNMDVAVGESVILPCQVQHDPLLDIMFAWYFNGALT 542

Query: 125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
               D +  E    +  G L+ I N     +G+Y C+V++ V  +S+   +IV G PG P
Sbjct: 543 DFKKDGSHFEKVGGSSSGDLM-IRNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPP 601

Query: 184 GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
             V+V E+  T+A + WT+G  +  P+  Y + ART ++  W +V    + + +D   G+
Sbjct: 602 ENVKVDEITDTTAQLSWTEGTDSHSPVISYAVQARTPFSVGWQSV--RTVPEVID---GK 656

Query: 244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
              +    L PW  YEF+++A N++G GEPS PS +  T    P  APS + GGGG   +
Sbjct: 657 THTATVVELNPWVEYEFRIVASNKIGGGEPSLPSEKVRTEEAAPEIAPSEVSGGGGSRSE 716

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           L I+W+P+P E QN     Y + +R    T +    +    N    V R  S   ++ YE
Sbjct: 717 LVITWDPVPEELQNGGGFGYVVAFRPLGVTTWIQTVVTSPDNPRY-VFRNESIVPFSPYE 775

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
           VKV   N+ G GP S V T+FSAE+ P VAP  + +   +S+ I V+WN I     N  G
Sbjct: 776 VKVGVYNNKGEGPFSPVTTVFSAEEEPTVAPSHISAHSLSSSEIEVSWNTIPWKLSN--G 833

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
            L+G+ ++YW     EE++        +  A++ GL+ +  YY  V AYN+AG GP S  
Sbjct: 834 HLLGYEVRYWNNGGEEESSRKVKVAGNQTSAVLRGLKSNLAYYTAVRAYNSAGAGPFSAT 893

Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA 543
               T +  P +PP  V +     T V + W  V     E  + GYKV      Q+    
Sbjct: 894 VNATTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVHV 952

Query: 544 NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
            +T     N   A+++ L   + Y + V A ++GGDG  S
Sbjct: 953 LNT-----NKTSAELL-LPIKEDYIIEVKATTDGGDGTSS 986

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity.

Mus musculus (taxid: 10090)

>sp|P97527|CNTN5_RAT Contactin-5 OS=Rattus norvegicus GN=Cntn5 PE=1 SV=1

 Score =  271 bits (694), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 287/613 (46%), Gaps = 24/613 (3%)

Query: 8    VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
            V I C P+ +PKP   W+K    +    R  I  +G+L I   S+ D G Y C   N+ G
Sbjct: 499  VLIECKPQGSPKPAISWRKGDKAVRGNKRIAILPDGSLRILNASKADEGKYICQGVNIFG 558

Query: 68   MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-N 126
              E    + V   P+  E  P +  +    ++ L C A  +  LDV + WT  G  I   
Sbjct: 559  SAEIIASVSVKE-PTRIELTPKRTELTVGESIVLNCKAMHDSSLDVTFYWTLKGQPIDFE 617

Query: 127  MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV 186
             +    E+         L I N     AG Y C V++T   +S +  ++V GPPG PG V
Sbjct: 618  KEGGHFESIRAQASSADLMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGVV 677

Query: 187  QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 246
             V E+ +++AT+ W+    N  PI+ Y + AR+ ++  W       +    +  TG  E+
Sbjct: 678  IVEEITESTATLSWSPATDNHSPISSYNLQARSPFSLGW-----QTVKTVPEVITGDMES 732

Query: 247  SIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI 306
            ++   L PW  YEF+V+A N +G G+PS PS    T    P  APS + GG G+  +L I
Sbjct: 733  AMAVDLNPWVEYEFRVVATNPIGTGDPSIPSRMIRTNEAVPKTAPSNVSGGSGRRHELVI 792

Query: 307  SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 366
            +WEP+  E QN     Y + +R  N T    E +    +    + R  S    T +EVKV
Sbjct: 793  AWEPVSEEFQNGEGFGYIVAFR-PNGTRGWKEKMVTSSDASKFIYRDESVPPLTPFEVKV 851

Query: 367  QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLI 426
               N+ G GP S++V I SAE  P  AP  V +   + + I V W   + ++E++ GR  
Sbjct: 852  GVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVW---KHVKESL-GRPQ 907

Query: 427  GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLE 486
            G  I YWK+  PE++A    +R   ++ ++ GL+ DT Y++ V AYN AG GP S     
Sbjct: 908  GFEIGYWKDTEPEDSAETVRTRGNESFVMLTGLEGDTLYHLTVRAYNGAGYGPPSREVSA 967

Query: 487  RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
             T R  P +PP  +  +    + V + W  V P   E  ++GYKV   +      +  +T
Sbjct: 968  TTKRHPPSEPPGNLRWEQ-QGSQVSLGWEPVRPLANESEVMGYKVFYRQEGHSKGQVIET 1026

Query: 547  IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYS 606
              P        +V L     Y + V A+S GGDG  SS  I        +  S    L+S
Sbjct: 1027 QKPQA------VVPLPEAGVYIIEVRAYSEGGDGTASS-QIRVPSYAGGKITSAQSTLHS 1079

Query: 607  ----ASTTLLLVM 615
                +S TLLL +
Sbjct: 1080 LSKWSSVTLLLAL 1092

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons. Probably involved in neuronal activity in the auditory system.

Rattus norvegicus (taxid: 10116)

>sp|Q9UQ52|CNTN6_HUMAN Contactin-6 OS=Homo sapiens GN=CNTN6 PE=1 SV=1

 Score =  271 bits (694), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 185/585 (31%), Positives = 282/585 (48%), Gaps = 28/585 (4%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
           GG++ I C P A P+    WK+    +    R  + E+G+L I  ++R D+G Y+C ATN
Sbjct: 424 GGDIVIGCKPNAFPRAAISWKRGTETLRQSKRIFLLEDGSLKIYNITRSDAGSYTCIATN 483

Query: 65  VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
             G  ++ G LIV    +     P K+ +    ++ L C    +  ++V ++W  NG  I
Sbjct: 484 QFGTAKNTGSLIVKER-TVITVPPSKMDVTVGESIVLPCQVSHDPSIEVVFVWFFNGDVI 542

Query: 125 GNMDLNELETPNINIDG---GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
              DL +       I G   G L I N     +G+Y C V++T+  +S    +IV GPPG
Sbjct: 543 ---DLKKGVAHFERIGGESVGDLMIRNIQLHHSGKYLCTVQTTLESLSAVADIIVRGPPG 599

Query: 182 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYT 241
            P  VQV ++  T++ + W  G  N  PI  + I  RT ++  W       +    +   
Sbjct: 600 PPEDVQVEDISSTTSQLSWRAGPDNNSPIQIFTIQTRTPFSVGW-----QAVATVPEILN 654

Query: 242 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKI 301
           G+   +    L PW  YEF+V+AGN +G GEPS PS    T A  P  AP  I GGGG  
Sbjct: 655 GKTYNATVVGLSPWVEYEFRVVAGNSIGIGEPSEPSELLRTKASVPVVAPVNIHGGGGSR 714

Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
            +L I+WE +P E QN     Y I +R    T +  E +    +    V R  S    + 
Sbjct: 715 SELVITWESIPEELQNGEGFGYIIMFRPVGSTTWSKEKVSSVESSRF-VYRNESIIPLSP 773

Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
           +EVKV   N+ G G  S V  ++S ED PQ+AP+G   + F+++ + V+WN I   R   
Sbjct: 774 FEVKVGVYNNEGEGSLSTVTIVYSGEDEPQLAPRGTSLQSFSASEMEVSWNAIAWNRNT- 832

Query: 422 RGRLIGHRIKYWKEDNPEETAVYYL---SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
            GR++G+ + YW +D+ E          + TT+N   I GL+ +T Y+  V AYN AG G
Sbjct: 833 -GRVLGYEVLYWTDDSKESMIGKIRVSGNVTTKN---ITGLKANTIYFASVRAYNTAGTG 888

Query: 479 PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
           P S      T +  P +PP+ +  K  N + + + W +V     E  ++GYK+   +  Q
Sbjct: 889 PSSPPVNVTTKKSPPSQPPANIAWKLTN-SKLCLNWEHVKTMENESEVLGYKILYRQNRQ 947

Query: 539 DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
             +     I+   NT    +V     + Y + +   S+GGDG  S
Sbjct: 948 SKTH----ILETNNTSAELLVPFE--EDYLIEIRTVSDGGDGSSS 986

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. Involved in motor coordination.

Homo sapiens (taxid: 9606)

>sp|Q90W79|CNTN5_CHICK Contactin-5 OS=Gallus gallus GN=CNTN5 PE=1 SV=1

 Score =  271 bits (692), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 196/586 (33%), Positives = 283/586 (48%), Gaps = 22/586 (3%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           +G  V I C P+A+PKP   WKK    +    R  I   G+L I   S+ D G YSC   
Sbjct: 422 KGQEVVIECKPQASPKPTITWKKGDKALRESKRVTILPQGSLRILNASKSDEGRYSCRGV 481

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
           NV G  E    + V   P+  E  P KI +    ++ L C A  +  LDV + WT NG  
Sbjct: 482 NVFGSAEIVASVSVKE-PTRIELTPKKIELTVGESIVLSCKALHDSTLDVTFYWTLNGQP 540

Query: 124 IG-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
           I  + +    E+         L I N     AG Y C V++    +S +T ++V GPPG 
Sbjct: 541 IDFDKEDGHFESIKAQASSADLMIRNILLMHAGRYGCRVQTAADAVSDETELLVRGPPGP 600

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           PG V V E+  T+AT+ W+ GA N  PI+ Y + AR+ ++  W       +    D  +G
Sbjct: 601 PGVVIVEEITDTTATLSWSPGADNHSPISLYNLQARSPFSLGW-----QTVKTVPDVISG 655

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 302
             E+++   L PW  YEF+V+A N++G G+PS+PS    T    P   P+ + G  G+  
Sbjct: 656 DMESAMAVELNPWVEYEFRVVATNKIGTGDPSAPSRMIRTNEAVPKTPPANVSGRSGRRH 715

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
           +L I+WEP+  E QN     Y + +R  N T    E +    +    + R  S    T +
Sbjct: 716 ELVIAWEPVSEEFQNGEGFGYIVAFR-PNGTRGWKEKMVTSSDASKFIYRDESVPPLTPF 774

Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIR 422
           EVKV   N+ G GP S +V I SAE  P  AP  V +   + + I V W   + I+E++ 
Sbjct: 775 EVKVGVYNNKGDGPFSPIVVICSAEGEPTAAPIDVKATSLSVSEILVAW---KHIKESL- 830

Query: 423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
           GR  G  I YWK+   EE A    +    +  L+ GL+ +T Y++ V AYN AG GP S 
Sbjct: 831 GRPQGFEIGYWKDMEQEEAAEKVKTAGNESSLLLTGLEGNTLYHLTVRAYNAAGYGPPST 890

Query: 483 RYLERTYRKAPQKPPSAVH-IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS 541
                T +  P + PS V  I+  + + V + W  V P   E  ++GYKV + +  Q   
Sbjct: 891 AVRVATKKSPPSQAPSNVMWIQ--DGSHVSLGWEPVRPLANESEVMGYKVLLRQEGQ--- 945

Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
            +N  +I    T  + +V L     Y + V A S GGDG  +SP I
Sbjct: 946 -SNSQVIETQKT--SAVVILPDVGVYIIEVCAVSEGGDG-TASPQI 987

Contactins mediate cell surface interactions during nervous system development. May contribute to the formation of somatotopic maps of cerebellar afferents during the development of the nervous system.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
332023779	1220	Contactin [Acromyrmex echinatior]	0.982	0.504	0.641	0.0
383850888	1650	PREDICTED: contactin-like [Megachile rot	0.956	0.363	0.689	0.0
340724306	1642	PREDICTED: contactin-like [Bombus terres	0.956	0.364	0.684	0.0
350420740	1813	PREDICTED: contactin-like [Bombus impati	0.956	0.330	0.683	0.0
380021534	1641	PREDICTED: contactin-like [Apis florea]	0.956	0.365	0.681	0.0
328787872	1641	PREDICTED: contactin-like [Apis mellifer	0.956	0.365	0.682	0.0
307183641	1156	Contactin [Camponotus floridanus]	0.988	0.535	0.670	0.0
242009529	1266	Contactin precursor, putative [Pediculus	0.977	0.483	0.661	0.0
307210402	1647	Contactin [Harpegnathos saltator]	0.963	0.366	0.647	0.0
345481084	937	PREDICTED: contactin [Nasonia vitripenni	0.976	0.652	0.632	0.0

>gi|332023779|gb|EGI64003.1| Contactin [Acromyrmex echinatior]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/624 (64%), Positives = 499/624 (79%), Gaps = 9/624 (1%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA EGGNVTI CNPEAAP+PKF+WKKDGNIIGSGGRR+I E GNL+ISPVSRDD G Y C
Sbjct: 598  YAAEGGNVTIMCNPEAAPRPKFIWKKDGNIIGSGGRRRILETGNLIISPVSRDDEGTYVC 657

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            TATN +G DE++GRLIVL GP + ++LP +I +  + NL L C  H +E+LD+AYIWTHN
Sbjct: 658  TATNQYGNDETRGRLIVLRGPQFVQRLPSQIILYYNNNLTLHCLGHIDEMLDIAYIWTHN 717

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI + DL     P +NIDG  L I NA+F +AGEYEC++KS VG IS+K  +IV+GPP
Sbjct: 718  GMRIRDKDLQN--NPRLNIDGEYLNIINATFTEAGEYECILKSAVGAISSKLNLIVQGPP 775

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQV+ + KTSAT++W+DGA NG+PIT Y I ART+WN TWF++ E++   E DRY
Sbjct: 776  GPPGGVQVMNIFKTSATLRWSDGAMNGKPITMYTISARTDWNQTWFSLVENITAFEADRY 835

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
             GRKEA++ENVL P+STYEF+V+A NE GYG PS PSP+Y+TP+DKP +APS I GGGGK
Sbjct: 836  NGRKEANLENVLNPYSTYEFRVLAFNEFGYGPPSLPSPRYSTPSDKPAKAPSNISGGGGK 895

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDL+I+W+PL    QN P +YYKIFWR+K  + EFQS +L+EYGN+G +VV IP ++YY
Sbjct: 896  IGDLTITWDPLNPSDQNGPGVYYKIFWRRKGYEKEFQSLSLQEYGNIGSSVVPIPQQYYY 955

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            TEYEVKVQAIN +G GP S + T++SAEDMPQ APQ V+S  +NST++NVTW PIE  RE
Sbjct: 956  TEYEVKVQAINAMGEGPVSNIETVYSAEDMPQAAPQLVYSMSYNSTSLNVTWQPIEQTRE 1015

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             +RG+LIGHRIKYW++   EE A YYLSRTTR W+L+VGLQPDT YYVKVMAYN+AGEGP
Sbjct: 1016 RVRGKLIGHRIKYWQKTISEEDATYYLSRTTRPWSLVVGLQPDTYYYVKVMAYNSAGEGP 1075

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESER+LERTYRK PQKPPS+V+I G+NP+T+ V WRYV+PS EEEP+IGYK+RVWE DQD
Sbjct: 1076 ESERFLERTYRKPPQKPPSSVNIYGVNPSTIRVVWRYVTPSLEEEPLIGYKIRVWEYDQD 1135

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKS 599
            MS ANDTI+P G+ L+A + +LSPGKRY +RVL FSNGGDGRMSSP  +FQMG+ + F+S
Sbjct: 1136 MSTANDTIVPGGSKLEAYVNNLSPGKRYRLRVLGFSNGGDGRMSSPTHSFQMGDTEAFRS 1195

Query: 600  GSPALYSASTTLLLVMSSTLYIFV 623
                  SA + +L +    +++ +
Sbjct: 1196 ------SAGSNILDITLGIIFLLL 1213

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850888|ref|XP_003701006.1| PREDICTED: contactin-like [Megachile rotundata]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/602 (68%), Positives = 491/602 (81%), Gaps = 3/602 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA E GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR+I E GNL+ISPVS DD G Y C
Sbjct: 603  YAAERGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRRILEGGNLIISPVSSDDEGTYVC 662

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            +ATN +G DE++GRLIVL  P + E+LP +IT A  +N  LRC    +E+LDVAYIW HN
Sbjct: 663  SATNQYGSDETRGRLIVLRRPYFLEKLPQRITTAVMQNQTLRCIGEVDEMLDVAYIWKHN 722

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI + DL     P + IDGG L I NA+FA+AG+YEC++KS VG+IS+ TTV++EGPP
Sbjct: 723  GLRIRDEDL--ASNPRLRIDGGELNIINATFAEAGDYECIIKSAVGEISSTTTVMIEGPP 780

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQVV + KTS T++WTDGA NGRPIT Y + ARTNWN TWFNV E++   EVDRY
Sbjct: 781  GPPGGVQVVNIVKTSTTLRWTDGAFNGRPITMYTVSARTNWNHTWFNVIENITAIEVDRY 840

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
             GRKEA +ENVL P++TYEF V A NELGY  PS+PSPQY+TP+DKPY+ PS IGGGGGK
Sbjct: 841  NGRKEAYLENVLNPYTTYEFCVSAFNELGYSVPSAPSPQYSTPSDKPYKIPSNIGGGGGK 900

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDL+I+W PLP  +QN P IYYK+FWR+K ++ EFQS +LK  GN+G +VV I  ++YY
Sbjct: 901  IGDLTIAWNPLPPSEQNGPGIYYKVFWRRKYHEKEFQSLSLKGQGNIGRSVVAIQPQYYY 960

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            TEYEVKVQAIN +G GP S  VTIFSAEDMPQVAPQ V +  +NST++ V+W+PIE  RE
Sbjct: 961  TEYEVKVQAINSLGSGPVSNEVTIFSAEDMPQVAPQQVVAHSYNSTSLKVSWSPIEQTRE 1020

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             +RG+LIGHRIKYWKE N EE AVYYLSR+T+ WAL+VGLQPDT YYVKVMAYN+AGEGP
Sbjct: 1021 KVRGKLIGHRIKYWKESNREEDAVYYLSRSTQPWALVVGLQPDTYYYVKVMAYNSAGEGP 1080

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESERYLERTYRKAPQKPPS+V + GINP+T+ V WRYV PS EEEP+IGYK+RVWE+DQD
Sbjct: 1081 ESERYLERTYRKAPQKPPSSVTVNGINPSTIRVVWRYVQPSLEEEPLIGYKIRVWELDQD 1140

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKS 599
            MS ANDTIIP G+ L+ADI +L+PGK YH+RVLAFS GGDGRMSSP  TFQMG+E  FKS
Sbjct: 1141 MSTANDTIIPGGSKLEADITNLTPGKAYHLRVLAFSKGGDGRMSSPTRTFQMGDEALFKS 1200

Query: 600  GS 601
             +
Sbjct: 1201 SA 1202

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724306|ref|XP_003400523.1| PREDICTED: contactin-like [Bombus terrestris]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/603 (68%), Positives = 493/603 (81%), Gaps = 4/603 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA E GNVTIFCNPEAAP+PKFVWKKDGN+IGSGGRRKI E GNL+ISPVSRDD G Y C
Sbjct: 602  YAAEKGNVTIFCNPEAAPRPKFVWKKDGNVIGSGGRRKILETGNLIISPVSRDDEGTYIC 661

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTH 119
            TATN +G D+++GRLIVL GP + E+LP  +T A  +N  LRC     +E+LDVAYIW H
Sbjct: 662  TATNQYGSDDTRGRLIVLRGPQFIEKLPQHVTSAVMQNQTLRCMGEVVDEMLDVAYIWKH 721

Query: 120  NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
            NG+RI + DL  +  P ++IDG  L I NA+FA+AGEY+C++KS VG+IS+KTTV +EGP
Sbjct: 722  NGLRIRDEDL--INNPRLHIDGEELNIINATFAEAGEYQCIIKSAVGEISSKTTVTIEGP 779

Query: 180  PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
            PG PGGVQVV + KTS T++WTDGA NG+PIT Y + ARTNWN TW N+ E++   EVDR
Sbjct: 780  PGPPGGVQVVNIVKTSTTLRWTDGAFNGKPITMYTVSARTNWNHTWSNIIENITAVEVDR 839

Query: 240  YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG 299
            Y GRKEA +ENVL P++TYEF V A NELGY  PSSPSPQY+TP+DKP + PS IGGGGG
Sbjct: 840  YNGRKEAYLENVLNPYTTYEFCVSAFNELGYSLPSSPSPQYSTPSDKPTKVPSNIGGGGG 899

Query: 300  KIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFY 358
            KIGDL+I+W+PLP  +QN P IYYK+FWR+K ++TEFQS +LK+YGN G +VV+I  ++Y
Sbjct: 900  KIGDLTITWDPLPSSEQNGPGIYYKVFWRQKYHETEFQSLSLKDYGNAGRSVVQIQQQYY 959

Query: 359  YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIR 418
            YTEYEVKVQA N +G GP S  VTIFSAEDMPQVAPQ V + G+NST++ V+W PIE  R
Sbjct: 960  YTEYEVKVQAANALGFGPISNAVTIFSAEDMPQVAPQQVIAHGYNSTSLKVSWLPIEQTR 1019

Query: 419  ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
            E IRG+LIGHRIKYWKE N EE AVYYLSR+ R WAL+VGLQPDT YYVKVMAYN+AGEG
Sbjct: 1020 ERIRGKLIGHRIKYWKESNKEEDAVYYLSRSARPWALVVGLQPDTYYYVKVMAYNSAGEG 1079

Query: 479  PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
            PESERYLERT+RKAPQKPPS+V++ G+NP+TV V WRYV PS EEEP+IGYK+RVWE+DQ
Sbjct: 1080 PESERYLERTFRKAPQKPPSSVNVYGVNPSTVRVVWRYVQPSLEEEPLIGYKIRVWELDQ 1139

Query: 539  DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598
            DMS ANDTIIP G+ L+A I +LSPGK YH+RVLAFSNGGDGRMSSP  TFQMG+   F+
Sbjct: 1140 DMSTANDTIIPGGSKLEAYITNLSPGKAYHLRVLAFSNGGDGRMSSPTHTFQMGDAAAFR 1199

Query: 599  SGS 601
            S +
Sbjct: 1200 SSA 1202

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420740|ref|XP_003492608.1| PREDICTED: contactin-like [Bombus impatiens]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/603 (68%), Positives = 492/603 (81%), Gaps = 4/603 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA E GNVTIFCNPEAAP+PKFVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y C
Sbjct: 602  YAAEKGNVTIFCNPEAAPRPKFVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYIC 661

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTH 119
            TATN +G D+++GRLIVL GP + E+LP  +T A  +N  LRC     +E+LDVAYIW H
Sbjct: 662  TATNQYGSDDTRGRLIVLRGPQFIEKLPQHVTSAVMQNQTLRCMGEVVDEMLDVAYIWKH 721

Query: 120  NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
            NG+RI + DL  +  P ++IDG  L I NA+FA+AGEY+C++KS VG+IS+KTTV +EGP
Sbjct: 722  NGLRIRDEDL--INNPRLHIDGEELNIINATFAEAGEYQCIIKSAVGEISSKTTVTIEGP 779

Query: 180  PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
            PG PGGVQVV + KTS T++WTDGA NG+PIT Y + ARTNWN TW N+ E++   EVDR
Sbjct: 780  PGPPGGVQVVNIVKTSTTLRWTDGAFNGKPITMYTVSARTNWNHTWSNIIENITAVEVDR 839

Query: 240  YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG 299
            Y GRKEA +ENVL P++TYEF V A NELGY  PSSPSPQY+TP DKP + PS IGGGGG
Sbjct: 840  YNGRKEAYLENVLNPYTTYEFCVSAFNELGYSLPSSPSPQYSTPPDKPTKVPSNIGGGGG 899

Query: 300  KIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFY 358
            KIGDL+I+W+PLP  +QN P IYYK+FWR+K ++TEFQS +LK+YGN G +VV+I  ++Y
Sbjct: 900  KIGDLTITWDPLPSSEQNGPGIYYKVFWRQKYHETEFQSLSLKDYGNAGRSVVQIQQQYY 959

Query: 359  YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIR 418
            YTEYEVKVQA N +G GP S  VTIFSAEDMPQVAPQ V + G+NST++ V+W PIE  R
Sbjct: 960  YTEYEVKVQAANALGFGPISNAVTIFSAEDMPQVAPQQVVAHGYNSTSLKVSWLPIEQTR 1019

Query: 419  ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
            E IRG+LIGHRIKYWKE N EE AVYYLSR+ R WAL+VGLQPDT YYVKVMAYN+AGEG
Sbjct: 1020 ERIRGKLIGHRIKYWKESNKEEDAVYYLSRSARPWALVVGLQPDTYYYVKVMAYNSAGEG 1079

Query: 479  PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
            PESERYLERT+RKAPQKPPS+V++ G+NP+TV V WRYV PS EEEP+IGYK+RVWE+DQ
Sbjct: 1080 PESERYLERTFRKAPQKPPSSVNVYGVNPSTVRVVWRYVQPSLEEEPLIGYKIRVWELDQ 1139

Query: 539  DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598
            DMS ANDTIIP G+ L+A I +LSPGK YH+RVLAFSNGGDGRMSSP  TFQMG+   F+
Sbjct: 1140 DMSTANDTIIPGGSKLEAYITNLSPGKAYHLRVLAFSNGGDGRMSSPTHTFQMGDAAAFR 1199

Query: 599  SGS 601
            S +
Sbjct: 1200 SSA 1202

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021534|ref|XP_003694618.1| PREDICTED: contactin-like [Apis florea]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/602 (68%), Positives = 490/602 (81%), Gaps = 3/602 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA E GN+TI CNPEAAP+PKFVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y C
Sbjct: 602  YAAEKGNITIICNPEAAPRPKFVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYIC 661

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            TATN +G DE++GRLIVL GP + E+LP +IT A  +N  LRC+   +E+LDVAYIW HN
Sbjct: 662  TATNQYGNDETRGRLIVLRGPQFMEKLPQQITTAVMQNQTLRCTGEIDEMLDVAYIWKHN 721

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI + DL  +  P +NI+G  L I NA+FA+AGEYEC++KS V +IS+KT V +EGPP
Sbjct: 722  GLRIRDEDL--INNPRLNINGEELNIINATFAEAGEYECIIKSAVSEISSKTVVTIEGPP 779

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQV  + KTS T++WTDGA NG+PIT Y I ARTNWN TWF + E++   EVDRY
Sbjct: 780  GPPGGVQVKNIVKTSTTLRWTDGAFNGKPITMYSISARTNWNHTWFTIIENITAIEVDRY 839

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
             GRKEA +ENVL P++TYEF+V A NELGY  PSSPSPQY+T +DKP + P  IGGGGGK
Sbjct: 840  NGRKEAYLENVLNPYTTYEFRVSAFNELGYSLPSSPSPQYSTSSDKPMKVPFNIGGGGGK 899

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDL+I+W PLP  +QN P IYYK+FWR+K ++TEFQS +LK YGNVG +VV I  ++YY
Sbjct: 900  IGDLTITWNPLPPSEQNGPGIYYKVFWRRKYHETEFQSLSLKNYGNVGRSVVPIQQQYYY 959

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            TEYEVKVQA+N +G GP S  VTIFSAEDMPQVAPQ V ++ +NST++ V+W PIE  RE
Sbjct: 960  TEYEVKVQAVNALGSGPISNAVTIFSAEDMPQVAPQQVVAQSYNSTSLKVSWKPIEETRE 1019

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             IRG+LIGHRIKYWKE+N EE AVYYLSR+ R WAL+VGLQPDT YYVKVMAYN+AGEGP
Sbjct: 1020 KIRGKLIGHRIKYWKENNREENAVYYLSRSRRPWALVVGLQPDTYYYVKVMAYNSAGEGP 1079

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESERYLERTYRKAPQKPPS+V++ G+NP+TV V WRYV PS EEEP+IGYK+RVWE+DQD
Sbjct: 1080 ESERYLERTYRKAPQKPPSSVNVYGVNPSTVRVVWRYVQPSLEEEPLIGYKIRVWELDQD 1139

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKS 599
            MS ANDTIIP G+ L+ADI +LSPGK YH+RVLAFS GGDGRMSSP  TFQMG+   F+S
Sbjct: 1140 MSTANDTIIPGGSKLEADITNLSPGKAYHLRVLAFSKGGDGRMSSPTHTFQMGDAAAFRS 1199

Query: 600  GS 601
             +
Sbjct: 1200 SA 1201

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787872|ref|XP_003251020.1| PREDICTED: contactin-like [Apis mellifera]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/602 (68%), Positives = 488/602 (81%), Gaps = 3/602 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA E GN+TI CNPEAAP+PKFVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y C
Sbjct: 602  YAAEKGNITIICNPEAAPRPKFVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYIC 661

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            TATN +G DE++GRLIVL GP + E+LP +IT A  +N  LRC    +E+LDVAYIW HN
Sbjct: 662  TATNQYGNDETRGRLIVLRGPQFMEKLPQQITTAVMQNQTLRCIGEIDEMLDVAYIWKHN 721

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI + DL  +  P +NI+G  L I NA+FA+AGEYEC++KS V +IS+KT V +EGPP
Sbjct: 722  GLRIRDEDL--INNPRLNINGEELNIINATFAEAGEYECIIKSAVSEISSKTIVTIEGPP 779

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQV  + KTS T++WTDGA NG+PIT Y I ARTNWN TWF + E++   EVDRY
Sbjct: 780  GPPGGVQVKNIVKTSTTLRWTDGAFNGKPITMYSISARTNWNHTWFIIIENITAIEVDRY 839

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
             GRKEA +ENVL P++TYEF+V A NELGY  PSSPSPQY+T  DKP + P  IGGGGGK
Sbjct: 840  NGRKEAYLENVLNPYTTYEFRVSAFNELGYSLPSSPSPQYSTSPDKPMKVPFNIGGGGGK 899

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDL+I+W PLP  +QN P IYYK+FWR+K ++TEFQS +LK YGNVG +VV I  ++YY
Sbjct: 900  IGDLTITWNPLPPSEQNGPGIYYKVFWRRKYHETEFQSLSLKNYGNVGRSVVPIQQQYYY 959

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            TEYEVKVQA+N +G GP S  VTIFSAEDMPQVAPQ V ++ +NST++ V+W PIE  RE
Sbjct: 960  TEYEVKVQAVNALGSGPISNAVTIFSAEDMPQVAPQQVVAQSYNSTSLKVSWKPIEETRE 1019

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             IRG+LIGHRIKYWKE+N EE AVYYLSRT R WAL+VGLQPDT YYVKVMAYN+AGEGP
Sbjct: 1020 KIRGKLIGHRIKYWKENNREENAVYYLSRTRRPWALVVGLQPDTYYYVKVMAYNSAGEGP 1079

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESERYLERTYRKAPQKPPS+V++ G+NP+TV V WRYV PS EEEP+IGYK+RVWE+DQD
Sbjct: 1080 ESERYLERTYRKAPQKPPSSVNVYGVNPSTVRVVWRYVQPSLEEEPLIGYKIRVWELDQD 1139

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKS 599
            MS ANDTIIP G+ L+ADI +LSPGK YH+RVLAFS GGDGRMSSP  TFQMG+   F+S
Sbjct: 1140 MSTANDTIIPGGSKLEADITNLSPGKAYHLRVLAFSKGGDGRMSSPTHTFQMGDAAAFRS 1199

Query: 600  GS 601
             +
Sbjct: 1200 SA 1201

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183641|gb|EFN70344.1| Contactin [Camponotus floridanus]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/625 (67%), Positives = 506/625 (80%), Gaps = 6/625 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA EGGNVTI C PEAAP+PKFVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y C
Sbjct: 534  YAAEGGNVTIVCKPEAAPRPKFVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYVC 593

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            TATN +G DE++GRLIVL GP   E+LPP++ ++ + N  LRC  +T+E+LDVAYIW HN
Sbjct: 594  TATNQYGSDETRGRLIVLRGPELIERLPPRLIMSYNNNQTLRCLGNTDEMLDVAYIWRHN 653

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI + DL      + +IDG  L+I NA+FA++GEYEC++KS VG+IS+KT +IV GPP
Sbjct: 654  GMRIRDKDLEN--NRHWHIDGEYLDIINATFAESGEYECILKSAVGEISSKTDLIVNGPP 711

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQVV + K SAT++WTDGA NG+ IT Y I ARTNWN TWF + E++   E+DRY
Sbjct: 712  GPPGGVQVVNIVKISATLRWTDGAFNGKVITMYTISARTNWNRTWFPLVENITAIEMDRY 771

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
             GRKEA +ENVL P++TYEF+++A NELGYG PSSPSPQY+TP DKP ++PS I GGGGK
Sbjct: 772  NGRKEAFLENVLNPYTTYEFRILAFNELGYGPPSSPSPQYSTPPDKPTKSPSNISGGGGK 831

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDL+I+W+PLP   QN P IYYKIFWR+K +D+E+QS  L+EYGNVG +VV I S+FYY
Sbjct: 832  IGDLTITWDPLPSSDQNGPGIYYKIFWRRKGHDSEYQSLPLREYGNVGSSVVPIQSQFYY 891

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            T+YEVKVQAIN +G GP SE  T++SAEDMPQVAPQ V+S  +NST++N+TW PIE  RE
Sbjct: 892  TKYEVKVQAINVIGEGPISETTTVYSAEDMPQVAPQQVYSMSYNSTSLNITWQPIEQTRE 951

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             +RG+LIGHRIKYWKE  PEE A YYLSRTTR W+L+VGLQPDT YYVKVMAYN+AGEGP
Sbjct: 952  RVRGKLIGHRIKYWKESVPEEHATYYLSRTTRPWSLVVGLQPDTYYYVKVMAYNSAGEGP 1011

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESERYLERTYRKAPQKPPS+V++ G+NP+TV V WRYV PS EEEP+IGYK+R+WEVDQD
Sbjct: 1012 ESERYLERTYRKAPQKPPSSVNVYGVNPSTVRVVWRYVQPSLEEEPLIGYKIRIWEVDQD 1071

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKS 599
            MS ANDTIIP G+ L+ADI +LSPGK YH+RVLAFSNGGDGRMSSP  TFQMG+   F+S
Sbjct: 1072 MSTANDTIIPGGSKLEADIRNLSPGKAYHLRVLAFSNGGDGRMSSPTHTFQMGDAAAFRS 1131

Query: 600  --GSPALYSA-STTLLLVMSSTLYI 621
              G+  L +A   T LL +    YI
Sbjct: 1132 SAGNKILDAALGITFLLFLRVFDYI 1156

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009529|ref|XP_002425536.1| Contactin precursor, putative [Pediculus humanus corporis] gi|212509411|gb|EEB12798.1| Contactin precursor, putative [Pediculus humanus corporis]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/617 (66%), Positives = 491/617 (79%), Gaps = 5/617 (0%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA EGGNVTI CNPEAAP+PKFVWKK+ +I+GSGGRRKI ENGNL+ISPVSRDD G+Y+C
Sbjct: 645  YAAEGGNVTIVCNPEAAPRPKFVWKKNNDILGSGGRRKILENGNLIISPVSRDDEGLYTC 704

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            TA+N +G+DES+G LIVL  P      PP+I  +   N  L C A+T+ELLD AYIWTHN
Sbjct: 705  TASNNYGVDESRGLLIVLRAPKMTSTFPPQIITSVMENFTLNCEANTDELLDTAYIWTHN 764

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI   D + L    +  DGG+L + N + A+AGEYEC+VKS VG+ISTKT VIV GPP
Sbjct: 765  GIRIKERDSSNLR---LIPDGGILHVINTTLAEAGEYECIVKSAVGRISTKTNVIVHGPP 821

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGGVQVV +  TSATIQWTDGA+NGRPI +Y + ARTNWNSTW NV++ +  +EVDRY
Sbjct: 822  GPPGGVQVVSISTTSATIQWTDGASNGRPILYYNVAARTNWNSTWQNVTKLITAREVDRY 881

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
              RKEA +ENVL PWS YEF+V+A N++G G PS PSPQY+TP D P + PS IGGGGGK
Sbjct: 882  NNRKEAILENVLSPWSIYEFRVLAVNQIGPGYPSLPSPQYSTPPDSPNKPPSNIGGGGGK 941

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDLSI+W PLP + QN P IYYKIFWR+   + EF+ + LKE+GNVG AVVR+ SE+Y+
Sbjct: 942  IGDLSITWTPLPPQDQNGPGIYYKIFWRRNGTNREFEFKELKEFGNVGAAVVRVNSEYYF 1001

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            TEYEVKVQAIND+G GPES V  I+SAE+MP  APQ V +R FNST++NVTW PI + R+
Sbjct: 1002 TEYEVKVQAINDIGKGPESAVHVIYSAEEMPLAAPQQVSARSFNSTSLNVTWTPIPMRRD 1061

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             +RG+LIGHR+KYWK    E  AVYYLSRT R WALIVGLQPDT Y VKVMAYNNAGEGP
Sbjct: 1062 IVRGKLIGHRLKYWKTSQQEFEAVYYLSRTLRPWALIVGLQPDTYYNVKVMAYNNAGEGP 1121

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESE+++ERT+RKAPQKPPS+VH+ GINP+T+ V WRYVSPS +EEP+IGYKVR+WEVDQD
Sbjct: 1122 ESEKFIERTFRKAPQKPPSSVHVMGINPSTIKVVWRYVSPSHDEEPLIGYKVRIWEVDQD 1181

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE-KEFK 598
            M+ ANDTI+PVG+TL+A I  L+PGK+YH+RVLAFSNGGDGRMSSPA TFQMG    +  
Sbjct: 1182 MASANDTIVPVGSTLEAYINTLTPGKQYHLRVLAFSNGGDGRMSSPAHTFQMGPTLAQTS 1241

Query: 599  SGSPALYSASTTLLLVM 615
            S + A+YS+ T  +L  
Sbjct: 1242 SQTKAIYSSVTVFVLTF 1258

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210402|gb|EFN86967.1| Contactin [Harpegnathos saltator]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/613 (64%), Positives = 497/613 (81%), Gaps = 10/613 (1%)

Query: 1    YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            YA EGGNVT+ C PEAAPKP F W+KD   +G+GGRR+I  NGNL+ISPVSRDD G Y C
Sbjct: 608  YAAEGGNVTLMCKPEAAPKPDFKWRKDKTTLGAGGRRRIV-NGNLIISPVSRDDEGTYVC 666

Query: 61   TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
             ATN +G DE++GRLIVL  P + E+LP +I ++ ++N  LRC  + +E+LD+AYIW HN
Sbjct: 667  VATNEYGQDETRGRLIVLRAPYFIERLPTRIIMSYNQNQTLRCLGYADEMLDMAYIWKHN 726

Query: 121  GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G+RI N DL  +  P I++DG  L+I NA+F + G+YECV+KS VG+IS+KT +IVEGPP
Sbjct: 727  GMRIRNKDL--MNNPRIHVDGEYLDIINATFVETGDYECVLKSAVGEISSKTILIVEGPP 784

Query: 181  GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
            G PGG+ V+ V KTSATI+WTDGA NGR IT Y++ ART WN+TWF V E++   E+DRY
Sbjct: 785  GPPGGILVMNVAKTSATIRWTDGALNGRLITMYRVEARTKWNNTWFPVVENITAIEMDRY 844

Query: 241  TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK 300
             GRKEA +ENVL P+S+YEF+V A NE GYG PSSPSP+++T ADKP +APS I GGGGK
Sbjct: 845  IGRKEAHLENVLNPYSSYEFRVSAFNEFGYGPPSSPSPRHSTLADKPTKAPSNISGGGGK 904

Query: 301  IGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYY 359
            IGDL+I+W+PL    QN P IYYKIFWR+K ++T+FQS +LKE+GN+G++VV + S++YY
Sbjct: 905  IGDLTITWDPLSPSDQNGPRIYYKIFWRRKGHETQFQSLSLKEFGNIGMSVVSVQSKYYY 964

Query: 360  TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE 419
            TEYEVKVQAIND+G GP S++ T++SAEDMPQVAPQ V +  +NST++NV+W+PIE  RE
Sbjct: 965  TEYEVKVQAINDLGAGPISDIYTVYSAEDMPQVAPQLVVAMSYNSTSLNVSWSPIEQTRE 1024

Query: 420  NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             +RG+LIGHRIKYWK + PEE AVYYLSRTTR W+L+VGLQPDT Y+VKVMAYN+AGEGP
Sbjct: 1025 RVRGKLIGHRIKYWKNNFPEEGAVYYLSRTTRPWSLVVGLQPDTYYFVKVMAYNSAGEGP 1084

Query: 480  ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD 539
            ESER+LERTYRKAPQKPPS+V++ G+NP+TV V WRYV PS EEEP+IGYK+RVW+ D+D
Sbjct: 1085 ESERFLERTYRKAPQKPPSSVNVYGVNPSTVRVVWRYVQPSLEEEPLIGYKIRVWDRDRD 1144

Query: 540  MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKS 599
            MS ANDTIIP G+ L+ADI +LSPGK Y++RVLAFSNGGDGRMSSP  TFQMG+ + F+S
Sbjct: 1145 MSTANDTIIPGGSKLEADIKNLSPGKGYNLRVLAFSNGGDGRMSSPTHTFQMGDPEAFRS 1204

Query: 600  GSPALYSASTTLL 612
            G      A TT L
Sbjct: 1205 G------AGTTFL 1211

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481084|ref|XP_001605461.2| PREDICTED: contactin [Nasonia vitripennis]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/618 (63%), Positives = 487/618 (78%), Gaps = 7/618 (1%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           YA EGGNVT+ CNPEAAP+PKF WKKDGN++GSGGRR+I + G+L+ISPVSRDD G Y C
Sbjct: 315 YAAEGGNVTLICNPEAAPRPKFTWKKDGNVLGSGGRRRITDTGSLIISPVSRDDEGTYVC 374

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
             +N +G DES+GRLIVL+GP   E LPP I  A + N  LRC A+T+E+LDVAYIW HN
Sbjct: 375 QVSNEYGNDESRGRLIVLNGPVLIESLPPTIRTAVNLNQTLRCMAYTDEMLDVAYIWMHN 434

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            +RI + DL     P+I I+GG L+I NA+FA+AG+YEC+VKSTVG+IS++TT+ +EGPP
Sbjct: 435 DMRIRDKDLKA--NPHIVINGGQLDIINATFAEAGDYECIVKSTVGRISSRTTITIEGPP 492

Query: 181 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV-DR 239
           G PGG+QV+ V KTS  + WTDGA NGRPI  Y I A+TNWN TWFN++E      + DR
Sbjct: 493 GPPGGIQVLNVVKTSVDLSWTDGAYNGRPIDRYTISAKTNWNQTWFNLTEDFTAYTIGDR 552

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG 299
            TGRK A +ENVL P++TYEF++ AGNELGYG PS PSPQY+TP+DKP  APS I GGGG
Sbjct: 553 NTGRKRAHLENVLRPFTTYEFRIQAGNELGYGPPSLPSPQYSTPSDKPIVAPSNIRGGGG 612

Query: 300 KIGDLSISWEPLPREKQNAPNIYYKIFWR-KKNDTEFQSETLKEYGNVGIAVVRIPSEFY 358
           K+GDL+I W+PL   +Q  P I+YK++WR KK ++EFQS  LKE+GNVG++VV I S++Y
Sbjct: 613 KLGDLTIKWDPLKSSEQYGPGIFYKVYWRRKKGESEFQSLALKEHGNVGMSVVPIQSQYY 672

Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIR 418
           YTEYEV VQA NDVG GP+SE+ TI+SAEDMPQVAPQ V +  +N TA+NVTWNPIE  R
Sbjct: 673 YTEYEVMVQAANDVGYGPKSEIFTIYSAEDMPQVAPQLVTAFSYNGTALNVTWNPIEQTR 732

Query: 419 ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
           E +RGRLIGHRIKYWKE+  EE AVYYLSRTTR W+L+VGLQPDT YYVKVMAYN+AGEG
Sbjct: 733 ERVRGRLIGHRIKYWKENGREEDAVYYLSRTTRPWSLVVGLQPDTYYYVKVMAYNSAGEG 792

Query: 479 PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
           PESERYL+RT+R+APQKPPS+V++ G NPT+V VTWRYV     EEP+IG+K+RVWE DQ
Sbjct: 793 PESERYLQRTFRRAPQKPPSSVNVFGRNPTSVRVTWRYVQNPNGEEPVIGFKIRVWETDQ 852

Query: 539 DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598
           DMS A DT++P  + + A I +L  GK Y +R+LA+SNGGDGRMSSPA  F+MG+  ++ 
Sbjct: 853 DMSTAVDTLVP-PDAIVAIIENLGVGKEYFLRMLAYSNGGDGRMSSPAHRFRMGDATDY- 910

Query: 599 SGSPALYSASTTLLLVMS 616
            G+ A      ++LL++S
Sbjct: 911 -GNDASRRKLDSMLLIVS 927

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
FB|FBgn0037240	1390	Cont "Contactin" [Drosophila m	0.940	0.423	0.578	1.2e-186
RGD|3253	1028	Cntn3 "contactin 3 (plasmacyto	0.896	0.545	0.306	5.7e-67
UNIPROTKB|G3XAD4	807	CNTN4 "Contactin 4, isoform CR	0.889	0.690	0.307	8.2e-67
UNIPROTKB|Q8IWV2	1026	CNTN4 "Contactin-4" [Homo sapi	0.889	0.542	0.307	2.6e-66
UNIPROTKB|E2RJ85	1013	CNTN2 "Uncharacterized protein	0.829	0.512	0.314	4.9e-66
RGD|621361	1026	Cntn4 "contactin 4" [Rattus no	0.889	0.542	0.309	5.6e-66
UNIPROTKB|Q02246	1040	CNTN2 "Contactin-2" [Homo sapi	0.829	0.499	0.314	8.2e-66
MGI|MGI:1095737	1026	Cntn4 "contactin 4" [Mus muscu	0.889	0.542	0.309	1.6e-65
UNIPROTKB|E1BPC9	1040	LOC100140960 "Uncharacterized	0.829	0.499	0.310	2.3e-65
MGI|MGI:104518	1040	Cntn2 "contactin 2" [Mus muscu	0.829	0.499	0.308	3.8e-65

FB|FBgn0037240 Cont "Contactin" [Drosophila melanogaster (taxid:7227)]

 Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
 Identities = 343/593 (57%), Positives = 421/593 (70%)

Query:     1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
             YA   GN TI C+PEAAP+PKF WKKDG +IGSGG R+I  +G L ISP SRDD GIY+C
Sbjct:   768 YAVYNGNTTIVCDPEAAPRPKFQWKKDGQVIGSGGHRRILPSGTLTISPTSRDDEGIYTC 827

Query:    61 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
              A+N  G DES  R+IVL    + E  P +I    H  + L C A  +ELLD+AY+W HN
Sbjct:   828 IASNQAGTDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHN 887

Query:   121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXX 180
             G  + N   N   T  I +D   L + N S  DAG+YECVVKS V +IS+KT+       
Sbjct:   888 GEVLKN---NHDGTGRIIVDWNRLTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAP 944

Query:   181 XXXXXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
                         KT A I+W DG+ NGR I +Y I+ RTNWN TW NVS HV  +EVDRY
Sbjct:   945 GAPGGVQVIQISKTKAIIEWVDGSHNGRAIRYYNILGRTNWNRTWVNVSTHVQAREVDRY 1004

Query:   241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXX 300
             T R++A + N L PWS YEF V A N+LG G PS+PSP Y+T  DKPY AP         
Sbjct:  1005 TSRQQAEVVN-LTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGK 1063

Query:   301 XXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
               DL+I+W+PL  ++Q++  I+YK+FW+ K   E+ S+ +K+  ++G+AVV IP   YYT
Sbjct:  1064 IGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLNNYYT 1123

Query:   361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
             EYEVKVQAIN VG GPESE+  I SAEDMPQVAPQ   +  +NST  NVTW PI++ REN
Sbjct:  1124 EYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSREN 1183

Query:   421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
             IRG+LIGHR+KYWK  + EE +VYYLSRTTRNWALIVGLQPDT Y+VKVMAYN AGEGPE
Sbjct:  1184 IRGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWALIVGLQPDTYYFVKVMAYNAAGEGPE 1243

Query:   481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
             SER+ ERTYRKAPQKPPS+VH+ GINP+TV V WRYVSPS +EEP+ GYKVR+WE DQ+M
Sbjct:  1244 SERFEERTYRKAPQKPPSSVHVYGINPSTVRVVWRYVSPSQDEEPVEGYKVRIWESDQNM 1303

Query:   541 SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
               AN+TI+P+G  L++ I +L+PGK Y+MRVLA+SNGGDGRMSSP + FQMG+
Sbjct:  1304 ITANNTIVPIGQKLESYINNLTPGKSYNMRVLAYSNGGDGRMSSPTLHFQMGK 1356

GO:0007155 "cell adhesion" evidence=ISS

GO:0005918 "septate junction" evidence=IDA;NAS

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0005919 "pleated septate junction" evidence=IDA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IC

GO:0021682 "nerve maturation" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

RGD|3253 Cntn3 "contactin 3 (plasmacytoma associated)" [Rattus norvegicus (taxid:10116)]

 Score = 685 (246.2 bits), Expect = 5.7e-67, P = 5.7e-67
 Identities = 178/581 (30%), Positives = 269/581 (46%)

Query:     5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
             G  V + C P A+P+    WKK   ++    R  +  +G L I  V++ D+GIY+C A N
Sbjct:   424 GSLVILDCKPSASPRALSFWKKGDTVVREQARISLLNDGGLKIMNVTKADAGIYTCIAEN 483

Query:    65 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
               G      +L+V   P+     P  + +A   ++ L C    + LLD+ + W  NG   
Sbjct:   484 QFGKANGTTQLVVTE-PTRIILAPSNMDVAVGESIILPCQVQHDPLLDIMFAWYFNGTLT 542

Query:   125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXX 183
                 D +  E    +  G L+ I N     +G+Y C+V++ V  +S+             
Sbjct:   543 DFKKDGSHFEKVGGSSSGDLM-IRNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPP 601

Query:   184 XXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
                       T+A + WT+G  +  P+  Y + ART ++  W NV    + + +D  T R
Sbjct:   602 ENVKVDEITDTTAQLSWTEGTDSHSPVISYAVQARTPFSVGWQNV--RTVPEAIDGKT-R 658

Query:   244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXD 303
                 +E  L PW  YEF+V+A N++G GEPS PS +  T    P  APS          +
Sbjct:   659 TATVVE--LNPWVEYEFRVVASNKIGGGEPSLPSEKVRTEEAAPEVAPSEVSGGGGSRSE 716

Query:   304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             L I+W+P+P E QN     Y + +R    T +    +    N    V R  S   ++ YE
Sbjct:   717 LVITWDPVPEELQNGGGFGYVVAFRPLGVTTWIQTVVTSPDNPRY-VFRNESIVPFSPYE 775

Query:   364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
             VKV   N+ G GP S V T+FSAE+ P VAP  + +   +S+ I V+WN I     N  G
Sbjct:   776 VKVGVYNNKGEGPFSPVTTVFSAEEEPTVAPSHISAHSLSSSEIEVSWNTIPWKSSN--G 833

Query:   424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
             RL+G+ ++YW     EE++        +  A++ GL+ +  YY  V AYN AG GP S  
Sbjct:   834 RLLGYEVRYWNNGGEEESSSKVKVAGNQTSAVLRGLKSNLAYYTAVRAYNTAGAGPFSAT 893

Query:   484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA 543
                 T +  P +PP  V +     T V + W  V     E  + GYKV      +  S+ 
Sbjct:   894 VNATTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKALENESEVTGYKVFY----RTSSQN 948

Query:   544 NDTIIPVGNTLDADIVDLSPGKR-YHMRVLAFSNGGDGRMS 583
             N  ++    T  A++  L P K  Y + V A ++GGDG  S
Sbjct:   949 NVQVLNTNKT-SAEL--LLPIKEDYIIEVKATTDGGDGTSS 986

GO:0007399 "nervous system development" evidence=IDA

GO:0016337 "cell-cell adhesion" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=NAS

UNIPROTKB|G3XAD4 CNTN4 "Contactin 4, isoform CRA_e" [Homo sapiens (taxid:9606)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 180/585 (30%), Positives = 270/585 (46%)

Query:     5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
             GG V I C P+A+PKP + WKK  +I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct:   203 GGEVVIECKPKASPKPVYTWKKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATN 262

Query:    65 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
               G   S G L+V   P+     P  + +    ++ L C    +  LD+ + W+ NG  I
Sbjct:   263 HFGTASSTGNLVV-KDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLI 321

Query:   125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXX 183
               + D +  E        G L I N     AG+Y C+V+++V ++S              
Sbjct:   322 DFDRDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPP 381

Query:   184 XXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
                       T+A + W  G  N  PIT Y I ART ++  W  VS   + + +D  T  
Sbjct:   382 EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVS--TVPELIDGKTFT 439

Query:   244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXD 303
               A++   L PW  YEF+ +A N +G GEPS PS +  T    P   P+          +
Sbjct:   440 --ATVVG-LNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 496

Query:   304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct:   497 LVITWETVPEELQNGRGFGYVVAFRPYGKMIWMLTVLAS-ADASRYVFRNESVHPFSPFE 555

Query:   364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIR 422
             VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W +P+E   +N R
Sbjct:   556 VKVGVFNNKGEGPFSPTTVVYSAEEEPTKPPASIFARSLSATDIEVFWASPLE---KN-R 611

Query:   423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             GR+ G+ +KYW+ ++ EE A    +   +    I  L+    Y++ V AYN+AG GP S 
Sbjct:   612 GRIQGYEVKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSA 671

Query:   483 RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS 541
                  T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S
Sbjct:   672 TVNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTS 730

Query:   542 --RANDTIIPVGNTLDAD-IVDLSPGKRYHMRVLAFSNGGDGRMS 583
                 N T + +    D D I+++ P          FS+GGDG  S
Sbjct:   731 VIETNKTSVELSLPFDEDYIIEIKP----------FSDGGDGSSS 765

GO:0007420 "brain development" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

UNIPROTKB|Q8IWV2 CNTN4 "Contactin-4" [Homo sapiens (taxid:9606)]

 Score = 679 (244.1 bits), Expect = 2.6e-66, P = 2.6e-66
 Identities = 180/585 (30%), Positives = 270/585 (46%)

Query:     5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
             GG V I C P+A+PKP + WKK  +I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct:   422 GGEVVIECKPKASPKPVYTWKKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATN 481

Query:    65 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
               G   S G L+V   P+     P  + +    ++ L C    +  LD+ + W+ NG  I
Sbjct:   482 HFGTASSTGNLVV-KDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLI 540

Query:   125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXX 183
               + D +  E        G L I N     AG+Y C+V+++V ++S              
Sbjct:   541 DFDRDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPP 600

Query:   184 XXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
                       T+A + W  G  N  PIT Y I ART ++  W  VS   + + +D  T  
Sbjct:   601 EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVS--TVPELIDGKTFT 658

Query:   244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXD 303
               A++   L PW  YEF+ +A N +G GEPS PS +  T    P   P+          +
Sbjct:   659 --ATVVG-LNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 715

Query:   304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct:   716 LVITWETVPEELQNGRGFGYVVAFRPYGKMIWMLTVLAS-ADASRYVFRNESVHPFSPFE 774

Query:   364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIR 422
             VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W +P+E   +N R
Sbjct:   775 VKVGVFNNKGEGPFSPTTVVYSAEEEPTKPPASIFARSLSATDIEVFWASPLE---KN-R 830

Query:   423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             GR+ G+ +KYW+ ++ EE A    +   +    I  L+    Y++ V AYN+AG GP S 
Sbjct:   831 GRIQGYEVKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSA 890

Query:   483 RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS 541
                  T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S
Sbjct:   891 TVNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTS 949

Query:   542 --RANDTIIPVGNTLDAD-IVDLSPGKRYHMRVLAFSNGGDGRMS 583
                 N T + +    D D I+++ P          FS+GGDG  S
Sbjct:   950 VIETNKTSVELSLPFDEDYIIEIKP----------FSDGGDGSSS 984

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0030424 "axon" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0007413 "axonal fasciculation" evidence=TAS

GO:0048167 "regulation of synaptic plasticity" evidence=TAS

GO:0045665 "negative regulation of neuron differentiation" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0007409 "axonogenesis" evidence=TAS

GO:0007420 "brain development" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0007158 "neuron cell-cell adhesion" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|E2RJ85 CNTN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 676 (243.0 bits), Expect = 4.9e-66, P = 4.9e-66
 Identities = 167/531 (31%), Positives = 248/531 (46%)

Query:     2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             A  GG + I C P AAPK   +W K   I+ +  R  +  +G L+I  +SR D G Y+C 
Sbjct:   403 AARGGEIAIPCQPRAAPKAVVLWSKGTEILVNSSRVTVTPDGTLIIRNISRSDEGKYTCF 462

Query:    62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
             A N  G   S G L V    +     P    I    +L L+C A  +  +D+ +IWT + 
Sbjct:   463 AENFMGKANSTGILSV-RDATKITLAPSSADINLGDSLTLQCHASHDPTMDLTFIWTLDD 521

Query:   122 VRIG-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXX 180
               I  +         +     G L I NA     G+Y C+ ++ V   S + T       
Sbjct:   522 FPIDFDKPGGHYRRASAKETVGDLTILNAQLRHGGKYTCMAQTVVDSASKEATVLVRGPP 581

Query:   181 XXXXXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
                          T+  + W+ G  N  PI  Y + ART     W  V  +    E    
Sbjct:   582 GPPGGVVVRNIGDTTVQLSWSRGFDNHSPIAKYTLQARTPPAGKWKQVRTNPANIE---- 637

Query:   241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXX 300
              G  E +    L PW  YEF+V+A N LG GEPS PS +  T    P  APS        
Sbjct:   638 -GNAETAQVLGLTPWMDYEFRVVASNILGTGEPSGPSSKIRTKEAAPSVAPSGLSGGGGA 696

Query:   301 XXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
               +L ++W P+PRE QN     Y + +R++  + +Q+  +    +    V    S   YT
Sbjct:   697 PGELILNWTPVPREYQNGDGFGYLLSFRRQGGSGWQTARVPG-ADAQHFVYSNDSVRPYT 755

Query:   361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
              +EVK+++ N  G GPES    + SAE+ P+VAP  V+++G +S+ +NVTW P++   ++
Sbjct:   756 PFEVKIRSYNRRGDGPESLTALVHSAEEEPRVAPTKVWAKGVSSSEMNVTWEPVQ---QD 812

Query:   421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
             + G L+G+ I+YWK  + E  A    +      A + GL PDTKY+V + AYN AG GP 
Sbjct:   813 MNGILLGYEIRYWKAGDKEAAADRVRTAGLDTSARVTGLHPDTKYHVTIRAYNRAGTGPT 872

Query:   481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV 531
             S      T +  PQ+PP  +     + +T+ + W  V P   E  + GYK+
Sbjct:   873 SPSANATTMKPPPQRPPDNISWT-FSSSTLSIKWDPVVPFRNESAVTGYKM 922

GO:0071206 "establishment of protein localization to juxtaparanode region of axon" evidence=IEA

GO:0060168 "positive regulation of adenosine receptor signaling pathway" evidence=IEA

GO:0048710 "regulation of astrocyte differentiation" evidence=IEA

GO:0048168 "regulation of neuronal synaptic plasticity" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045163 "clustering of voltage-gated potassium channels" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043209 "myelin sheath" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0031133 "regulation of axon diameter" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0022010 "central nervous system myelination" evidence=IEA

GO:0021853 "cerebral cortex GABAergic interneuron migration" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

RGD|621361 Cntn4 "contactin 4" [Rattus norvegicus (taxid:10116)]

 Score = 676 (243.0 bits), Expect = 5.6e-66, P = 5.6e-66
 Identities = 181/585 (30%), Positives = 269/585 (45%)

Query:     5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
             GG V I C P+A+P+P + W+K   I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct:   422 GGEVVIECKPKASPRPVYTWRKGREILRENERITISEDGNLRIINVTKSDAGSYTCIATN 481

Query:    65 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
               G   S G ++V   P+     P  + +    ++ L C    +  LD+ + WT NG  I
Sbjct:   482 HFGTASSTGNVVV-KDPTKVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLI 540

Query:   125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXX 183
               + D +  E        G L I N     AG+Y C+V+++V K+S              
Sbjct:   541 DFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPPGPP 600

Query:   184 XXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
                       T+A + W  G  N  PIT Y I ART ++  W  VS   + + VD  T  
Sbjct:   601 EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVS--TVPELVDGKTFT 658

Query:   244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXD 303
               A++   L PW  YEF+ +A N +G GEPS PS +  T    P   P+          +
Sbjct:   659 --ATVVG-LNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 715

Query:   304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct:   716 LVITWETVPEELQNGRGFGYVVAFRPHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFE 774

Query:   364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIR 422
             VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W +PI    +N R
Sbjct:   775 VKVGVFNNKGEGPFSPTTLVYSAEEEPTKPPASIFARSLSATDIEVFWASPIG---KN-R 830

Query:   423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             GR+ G+ +KYW+ D+ EE A    +   +    I  L+ +  Y++ V AYN+AG GP S 
Sbjct:   831 GRIQGYEVKYWRHDDKEENARKIRTVGNQTSTKITNLKGNALYHLSVKAYNSAGTGPSSA 890

Query:   483 RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS 541
                  T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S
Sbjct:   891 AVNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTS 949

Query:   542 --RANDTIIPVGNTLDAD-IVDLSPGKRYHMRVLAFSNGGDGRMS 583
                 N T + +    D D I+++ P          FS+GGDG  S
Sbjct:   950 VIETNKTSVELSLPFDEDYIIEIKP----------FSDGGDGSSS 984

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007399 "nervous system development" evidence=ISO;ISS

GO:0007420 "brain development" evidence=IEP

GO:0031175 "neuron projection development" evidence=IDA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO;ISS

UNIPROTKB|Q02246 CNTN2 "Contactin-2" [Homo sapiens (taxid:9606)]

 Score = 675 (242.7 bits), Expect = 8.2e-66, P = 8.2e-66
 Identities = 167/531 (31%), Positives = 248/531 (46%)

Query:     2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             A  GG + I C P AAPK   +W K   I+ +  R  +  +G L+I  +SR D G Y+C 
Sbjct:   430 AARGGEILIPCQPRAAPKAVVLWSKGTEILVNSSRVTVTPDGTLIIRNISRSDEGKYTCF 489

Query:    62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
             A N  G   S G L V    +     P    I    NL L+C A  +  +D+ + WT + 
Sbjct:   490 AENFMGKANSTGILSV-RDATKITLAPSSADINLGDNLTLQCHASHDPTMDLTFTWTLDD 548

Query:   122 VRIG-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXX 180
               I  +         N+    G L I NA     G+Y C+ ++ V   S + T       
Sbjct:   549 FPIDFDKPGGHYRRTNVKETIGDLTILNAQLRHGGKYTCMAQTVVDSASKEATVLVRGPP 608

Query:   181 XXXXXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
                          T+  + W+ G  N  PI  Y + ART     W  V  +    E    
Sbjct:   609 GPPGGVVVRDIGDTTIQLSWSRGFDNHSPIAKYTLQARTPPAGKWKQVRTNPANIE---- 664

Query:   241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXX 300
              G  E +    L PW  YEF+VIA N LG GEPS PS +  T    P  APS        
Sbjct:   665 -GNAETAQVLGLTPWMDYEFRVIASNILGTGEPSGPSSKIRTREAAPSVAPSGLSGGGGA 723

Query:   301 XXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
               +L ++W P+ RE QN     Y + +R++  T +Q+  +    +    V    S   YT
Sbjct:   724 PGELIVNWTPMSREYQNGDGFGYLLSFRRQGSTHWQTARVPG-ADAQYFVYSNESVRPYT 782

Query:   361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
              +EVK+++ N  G GPES    ++SAE+ P+VAP  V+++G +S+ +NVTW P++   ++
Sbjct:   783 PFEVKIRSYNRRGDGPESLTALVYSAEEEPRVAPTKVWAKGVSSSEMNVTWEPVQ---QD 839

Query:   421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
             + G L+G+ I+YWK  + E  A    +      A + GL P+TKY+V V AYN AG GP 
Sbjct:   840 MNGILLGYEIRYWKAGDKEAAADRVRTAGLDTSARVSGLHPNTKYHVTVRAYNRAGTGPA 899

Query:   481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV 531
             S      T +  P++PP  +     + +++ + W  V P   E  + GYK+
Sbjct:   900 SPSANATTMKPPPRRPPGNISWT-FSSSSLSIKWDPVVPFRNESAVTGYKM 949

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0021853 "cerebral cortex GABAergic interneuron migration" evidence=IEA

GO:0022010 "central nervous system myelination" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0031133 "regulation of axon diameter" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0048168 "regulation of neuronal synaptic plasticity" evidence=IEA

GO:0048710 "regulation of astrocyte differentiation" evidence=IEA

GO:0060168 "positive regulation of adenosine receptor signaling pathway" evidence=IEA

GO:0071206 "establishment of protein localization to juxtaparanode region of axon" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0042802 "identical protein binding" evidence=TAS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0033268 "node of Ranvier" evidence=ISS

GO:0044224 "juxtaparanode region of axon" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0045163 "clustering of voltage-gated potassium channels" evidence=ISS

GO:0043209 "myelin sheath" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

MGI|MGI:1095737 Cntn4 "contactin 4" [Mus musculus (taxid:10090)]

 Score = 672 (241.6 bits), Expect = 1.6e-65, P = 1.6e-65
 Identities = 181/585 (30%), Positives = 267/585 (45%)

Query:     5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
             GG V I C P+A+P+P + W+K   I+    R  I E+GNL I  V++ D+G Y+C ATN
Sbjct:   422 GGEVVIECKPKASPRPVYTWRKGREILRENERITISEDGNLRIINVTKSDAGSYTCIATN 481

Query:    65 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 124
               G   S G +IV   P+     P  + +    ++ L C    +  LD+ + WT NG  I
Sbjct:   482 HFGTASSTGNVIV-KDPTKVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLI 540

Query:   125 G-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXX 183
               + D +  E        G L I N     AG+Y C+V+++V K+S              
Sbjct:   541 DFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDKLSVAADLIVRGPPGPP 600

Query:   184 XXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 243
                       T+A + W  G  N  PIT Y I ART ++  W  V+   +   VD  T  
Sbjct:   601 EAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVN--TVPDLVDGKTFT 658

Query:   244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXD 303
               A++   L PW  YEF+ +A N +G GEPS PS +  T    P   P+          +
Sbjct:   659 --ATVVG-LNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSE 715

Query:   304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             L I+WE +P E QN     Y + +R      +    L    +    V R  S   ++ +E
Sbjct:   716 LVITWETVPEELQNGRGFGYVVAFRPHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFE 774

Query:   364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-NPIELIRENIR 422
             VKV   N+ G GP S    ++SAE+ P   P  +F+R  ++T I V W +PI    +N R
Sbjct:   775 VKVGVFNNKGEGPFSPTTLVYSAEEEPTKPPASIFARSLSATDIEVFWASPIG---KN-R 830

Query:   423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             GR+ G+ +KYW+ D+ EE A    +   +    I  L+    Y++ V AYN+AG GP S 
Sbjct:   831 GRIQGYEVKYWRHDDKEENAKKIRTVGNQTSTKITNLKGSALYHLSVKAYNSAGTGPSSA 890

Query:   483 RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV-WEVDQDMS 541
                  T +  P +PP  + I   + + + + W  V     E  + GYKV   W      S
Sbjct:   891 TVNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTS 949

Query:   542 --RANDTIIPVGNTLDAD-IVDLSPGKRYHMRVLAFSNGGDGRMS 583
                 N T + +    D D I+++ P          FS+GGDG  S
Sbjct:   950 VIETNKTSVELSLPFDEDYIIEIKP----------FSDGGDGSSS 984

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007399 "nervous system development" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031175 "neuron projection development" evidence=ISO

GO:0031225 "anchored to membrane" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

UNIPROTKB|E1BPC9 LOC100140960 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 671 (241.3 bits), Expect = 2.3e-65, P = 2.3e-65
 Identities = 165/531 (31%), Positives = 248/531 (46%)

Query:     2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             A  GG V I C P AAPK   +W K   I+ +  R  +  +G L+I  VSR D G Y+C 
Sbjct:   430 AARGGEVVIPCQPRAAPKAVVLWSKGTEILVNSSRVTVTPDGTLIIRNVSRSDEGKYTCF 489

Query:    62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
             A N  G   S G L V    +     P    I    NL L+C A  +  +D+ ++WT + 
Sbjct:   490 AENFMGKANSTGTLSV-RDATKITLAPSSADINLGDNLTLQCHASHDPTMDLTFVWTLDD 548

Query:   122 VRIG-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXX 180
               I  +      +  ++    G L I NA     G+Y C  ++ V   S + T       
Sbjct:   549 FPIDFDKPGGHYQRASVKETVGDLTILNAQLRHGGKYTCTAQTVVDSASKEATVLVRGPP 608

Query:   181 XXXXXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
                          TS  + W+ G  N  PI  Y + ART  +  W  V  +    E    
Sbjct:   609 GAPGGVVVRDISDTSVQLSWSRGFDNHSPIAKYTLQARTLPSGKWKQVRTNPTNIE---- 664

Query:   241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXX 300
              G  E +    L PW  YEF+V+A N LG GEPS PS +  T    P  APS        
Sbjct:   665 -GNAETAQVLGLTPWMDYEFRVLASNILGTGEPSGPSSKIQTKEAAPSVAPSGLSGGGGA 723

Query:   301 XXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
               +L+++W P+ RE Q+     Y + +R++  T +Q+  +    +    V    S   YT
Sbjct:   724 PGELTVTWTPMSREYQHGGGFGYLVSFRRQGGTSWQTARVPG-ADAQYFVYSNDSIRPYT 782

Query:   361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
              +EVK+++ N  G GPES V  ++SAE+ P+VAP  V+++  +S+ +NV+W P++   ++
Sbjct:   783 PFEVKIRSYNRRGDGPESLVAVVYSAEEEPRVAPPKVWAKAVSSSEMNVSWEPVQ---QD 839

Query:   421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
             + G L+G+ I+YWK       A    +      AL+ GL   TKY+V V AYN AG GP 
Sbjct:   840 MNGILLGYEIRYWKAGAKAAAAERVRTAGLDTSALVTGLHASTKYHVTVRAYNRAGTGPA 899

Query:   481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV 531
             S      T +  P++PP  +     + +++ + W  V P   E  + GYK+
Sbjct:   900 SPSANATTMKPPPRRPPGNISWT-FSSSSLSIKWDPVVPLGNESAVTGYKM 949

GO:0071206 "establishment of protein localization to juxtaparanode region of axon" evidence=IEA

GO:0060168 "positive regulation of adenosine receptor signaling pathway" evidence=IEA

GO:0048710 "regulation of astrocyte differentiation" evidence=IEA

GO:0048168 "regulation of neuronal synaptic plasticity" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045163 "clustering of voltage-gated potassium channels" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043209 "myelin sheath" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0031133 "regulation of axon diameter" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0022010 "central nervous system myelination" evidence=IEA

GO:0021853 "cerebral cortex GABAergic interneuron migration" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

MGI|MGI:104518 Cntn2 "contactin 2" [Mus musculus (taxid:10090)]

 Score = 669 (240.6 bits), Expect = 3.8e-65, P = 3.8e-65
 Identities = 164/531 (30%), Positives = 252/531 (47%)

Query:     2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             A  GG ++I C P AAPK   +W K   I+G+  R  +  +G L+I  +SR D G Y+C 
Sbjct:   432 AARGGEISIPCQPRAAPKATILWSKGTEILGNSTRVTVTLDGTLIIRNISRSDEGKYTCF 491

Query:    62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
             A N  G   S G L V    +     P    I    NL L+C A  +  +D+ + WT + 
Sbjct:   492 AENFMGKANSTGILSV-RDATKITLAPSSADINVGDNLTLQCHASHDPTMDLTFTWTLDD 550

Query:   122 VRIG-NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXX 180
               +  +         ++    G L I NA     G Y C+ ++ V   S + T       
Sbjct:   551 FPVDFDKPGGHYRRASVKETIGDLTILNAQLRHGGTYTCMAQTVVDGASKEATVLVRGPP 610

Query:   181 XXXXXXXXXXXHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
                          T+  + W+ G  N  PI  Y + ART  +  W  V  + +  E    
Sbjct:   611 GPPGGVVVRDIGDTTVQLSWSRGFDNHSPIAKYTLQARTPPSGKWKQVRTNPVNIE---- 666

Query:   241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXX 300
              G  E +    L+PW  YEF+V A N LG GEPS PS +  T    P  APS        
Sbjct:   667 -GNAETAQVLGLMPWMDYEFRVSASNILGTGEPSGPSSRIRTKEAVPSVAPSGLSGGGGA 725

Query:   301 XXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
               +L+I+W P+ RE QN     Y + +R++  + +Q+  +    +    V    S   YT
Sbjct:   726 PGELTINWTPMSREYQNGDGFGYLLSFRRQGSSSWQTARVPG-ADTQYFVYSNDSIHPYT 784

Query:   361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
              +EVK+++ N  G GPES    ++SAE+ P+VAP  V+++G +S+ +NV+W P+    ++
Sbjct:   785 PFEVKIRSYNRRGDGPESLTAIVYSAEEEPKVAPAKVWAKGSSSSEMNVSWEPV---LQD 841

Query:   421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
             + G L+G+ I+YWK  + E  A    +    + A + GL P+TKY+V V AYN AG GP 
Sbjct:   842 MNGILLGYEIRYWKAGDKEAAADRVRTAGLDSSARVTGLYPNTKYHVTVRAYNRAGTGPA 901

Query:   481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV 531
             S      T +  P++PP  +     + +++ + W  V P   E  + GYK+
Sbjct:   902 SPSADAMTMKPPPRRPPGNISWT-FSSSSLSLKWDPVVPLRNESTVTGYKM 951

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=ISO

GO:0007409 "axonogenesis" evidence=ISO

GO:0007411 "axon guidance" evidence=IGI;IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0007612 "learning" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008076 "voltage-gated potassium channel complex" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0010769 "regulation of cell morphogenesis involved in differentiation" evidence=IMP

GO:0010954 "positive regulation of protein processing" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0021853 "cerebral cortex GABAergic interneuron migration" evidence=IMP

GO:0022010 "central nervous system myelination" evidence=IMP

GO:0030246 "carbohydrate binding" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0031133 "regulation of axon diameter" evidence=IMP

GO:0031175 "neuron projection development" evidence=IGI

GO:0031225 "anchored to membrane" evidence=IEA

GO:0031623 "receptor internalization" evidence=IDA

GO:0033268 "node of Ranvier" evidence=IDA

GO:0034613 "cellular protein localization" evidence=IMP

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043209 "myelin sheath" evidence=IDA

GO:0043621 "protein self-association" evidence=IPI

GO:0044224 "juxtaparanode region of axon" evidence=IDA

GO:0045163 "clustering of voltage-gated potassium channels" evidence=IMP

GO:0045202 "synapse" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=IGI

GO:0048168 "regulation of neuronal synaptic plasticity" evidence=IMP

GO:0048710 "regulation of astrocyte differentiation" evidence=IMP

GO:0060168 "positive regulation of adenosine receptor signaling pathway" evidence=IMP

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IGI;IMP

GO:0071206 "establishment of protein localization to juxtaparanode region of axon" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VN14	CONT_DROME	No assigned EC number	0.6104	0.9408	0.4237	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	626
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	4e-18
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-14
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	7e-14
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-14
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	9e-14
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-13
smart00409	85	smart00409, IG, Immunoglobulin	2e-13
cd04970	85	cd04970, Ig6_Contactin_like, Sixth Ig domain of co	2e-13
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	6e-13
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-11
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	3e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-11
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	2e-09
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-09
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	2e-09
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	6e-09
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	1e-08
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-08
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-08
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	3e-08
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	1e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-07
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-07
cd05854	85	cd05854, Ig6_Contactin-2, Sixth Ig domain of conta	2e-07
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-07
smart00409	85	smart00409, IG, Immunoglobulin	3e-07
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	6e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	7e-07
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	8e-07
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	9e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-06
cd05853	85	cd05853, Ig6_Contactin-4, Sixth Ig domain of conta	2e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	7e-06
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	9e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	2e-05
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	2e-05
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	3e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	3e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-05
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	4e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-05
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	6e-05
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	6e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	8e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	9e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	2e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	2e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	3e-04
cd05873	87	cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like	3e-04
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	7e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	8e-04
cd05895	76	cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-	9e-04
cd05773	109	cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-	0.001
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	0.001
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.001
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.002
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.002
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.002
cd05727	96	cd05727, Ig2_Contactin-2-like, Second Ig domain of	0.002
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	0.002
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.002

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 78.6 bits (194), Expect = 4e-18
 Identities = 30/73 (41%), Positives = 41/73 (56%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
          GG+V I C P+AAPKP   W K   ++ +  R  I+ +G+L I  V++ D G Y+C A N
Sbjct: 1  GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 65 VHGMDESKGRLIV 77
            G   S G L V
Sbjct: 61 FFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
            EG +    C     P P   W KDG  + S  R K+   G    L IS V  DD G Y
Sbjct: 12 VQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKY 71

Query: 59 SCTATNVHGMDESKGRLIV 77
          +C ATN  G  E+   L V
Sbjct: 72 TCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 66.6 bits (162), Expect = 7e-14
 Identities = 31/73 (42%), Positives = 43/73 (58%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
          GG V I C P+AAPKPKF W K   ++ +  R  I+++G+L I  +++ D G Y+C A N
Sbjct: 1  GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 65 VHGMDESKGRLIV 77
            G   S G L V
Sbjct: 61 NRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 65.9 bits (161), Expect = 8e-14
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          EG +VT+ C  E  P P   W KDG  +    R        L I  VS +DSG+Y+C A 
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVA-SGSTLTIKSVSLEDSGLYTCVAE 59

Query: 64 NVHG 67
          N  G
Sbjct: 60 NSAG 63

Length = 63

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 66.8 bits (163), Expect = 9e-14
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P  P  ++V +V  TS T+ WT    +G PIT Y +  R   +  W  V           
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPG------ 54

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                  ++   L P + YEF+V A N  G   PS    
Sbjct: 55  --SETSYTLTG-LKPGTEYEFRVRAVNGGGESPPSESVT 90

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 5  GGNVTIFCN-PEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
          G    + C+ P   P+P   W+KDG  +     R +I ++GNLLI+   + D G Y C A
Sbjct: 11 GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVA 70

Query: 63 TNVHGMDESK-GRLIV 77
          TN+ G  ES   RL V
Sbjct: 71 TNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNI-IGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
          EG +VT+ C    +P P+  W K G   +   GR  +  +G+   L IS V+ +DSG Y+
Sbjct: 8  EGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYT 67

Query: 60 CTATNVHGMDESKGRLIV 77
          C ATN  G   S   L V
Sbjct: 68 CAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNI-IGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
          EG +VT+ C    +P P+  W K G   +   GR  +  +G+   L IS V+ +DSG Y+
Sbjct: 8  EGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYT 67

Query: 60 CTATNVHGMDESKGRLIV 77
          C ATN  G   S   L V
Sbjct: 68 CAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 98  NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE----LETPNINIDGGLLEITNASFAD 153
           ++ L+C A  +  LD+ + W+ NGV I   D ++              G L I NA    
Sbjct: 2   SITLQCHASHDPTLDLTFTWSFNGVPI---DFDKDGGHYRRVGGKDSNGDLMIRNAQLKH 58

Query: 154 AGEYECVVKSTVGKISTKTTVIVEGPP 180
           AG+Y C  ++ V  +S    +IV GPP
Sbjct: 59  AGKYTCTAQTVVDSLSASADLIVRGPP 85

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ + +  +  T++ ++W   SP     PI GY+V    V+       +  +P G T  
Sbjct: 2   APTNLTVTDVTSTSLTLSW---SPPPGNGPITGYEVEYRPVN-GGEEWKEITVP-GTTTS 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
             +  L PG  Y +RV A +  G+G  S
Sbjct: 57  YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +      ST++ ++W+P         G + G+ ++Y   +  EE     +  TT +
Sbjct: 2   APTNLTVTDVTSTSLTLSWSPPPG-----NGPITGYEVEYRPVNGGEEWKEITVPGTTTS 56

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPES 481
              + GL+P T+Y V+V A N AGEGP S
Sbjct: 57  -YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PP+ + +  +  T+V ++W    P  +  PI GY V   E      +  +     G+   
Sbjct: 3   PPTNLRVTDVTSTSVTLSWT--PPEDDGGPITGYVVEYREKGSGDWKEVEV--TPGSETS 58

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
             +  L PG  Y  RV A + GG+   S  
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGGGESPPSES 88

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.9 bits (139), Expect = 8e-11
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 8  VTIFCNPEAAPKPKFVWKKDGNIIGSG-------GRRKIFENGNLLISPVSRDDSGIYSC 60
          VT+ C     P P   W K+G  + S         R     +  L IS V+ +DSG Y+C
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 61 TATNVHGMDESK 72
           A+N  G   + 
Sbjct: 61 VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +      ST++ ++W P E     I G ++      ++E    +     ++  +  
Sbjct: 3   PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVV-----EYREKGSGDWKEVEVTPGSET 57

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
              + GL+P T+Y  +V A N  GE P SE     T
Sbjct: 58  SYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          EG +VT+ C+    P P + W KDG  + S        N       VS +DSG Y+C A+
Sbjct: 13 EGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPN-------VSAEDSGTYTCVAS 65

Query: 64 NVHG 67
          N  G
Sbjct: 66 NGGG 69

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PPS + +  +  T+V ++W           I+GY+V   E   +    N T     ++  
Sbjct: 3   PPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVT----PSSTS 58

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDG 580
             +  L PG  Y  RV A +  G+G
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPV-----SRDDSGI 57
          GG V + C+ E  P PK  WKKDG ++   S  RR+   NG+LLI+ V     ++ D G 
Sbjct: 14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGF 73

Query: 58 YSCTATN 64
          Y C A N
Sbjct: 74 YQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +      ST++ ++W P     + I G ++G+R++Y +E +  +         +  
Sbjct: 3   PPSNLRVTDVTSTSVTLSWEPPP--DDGITGYIVGYRVEYREEGSEWKEVN---VTPSST 57

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEG 478
              + GL+P T+Y  +V A N AGEG
Sbjct: 58  SYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           A  G ++   C     P+P + W K+G  + S  R ++ E G+L I+ +S  DSG+Y C
Sbjct: 10 EADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQC 68

Query: 61 TATNVHG 67
           A N HG
Sbjct: 69 VAENKHG 75

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSC 60
          G +VT+ C+    P+    W K+G  +         EN      L IS V+ +DSG Y+C
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 61 TA 62
            
Sbjct: 61 VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 8  VTIFCNPEAAPKPKFVWK--------KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
          VT+ C+ E  P P  VWK        +  +     GR ++  NG+LLI  V  +DSG Y 
Sbjct: 1  VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 60 CTATNVHGMDESK 72
          C  +N  G D SK
Sbjct: 61 CKVSNDVGADASK 73

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 180 PGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P  P  ++V +V  TS T+ W           I  Y++  R    S W         KEV
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREE-GSEW---------KEV 50

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 271
           +        ++   L P + YEF+V A N  G G
Sbjct: 51  NVTPSSTSYTLTG-LKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 8  VTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 66
          V   C     P P  +W+K DG +    GR +I ++ +L I  V+  D G Y+C A N+ 
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGEL--PKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMV 58

Query: 67 GMDESKGRLIV 77
          G  E+   L V
Sbjct: 59 GKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR---TNWNSTWFNVSEHVIGKEVDR 239
           P  + V +V  TS T+ W+       PIT Y++  R            V           
Sbjct: 3   PTNLTVTDVTSTSLTLSWS-PPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTT------ 55

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
                  ++   L P + YE +V A N  G G PS
Sbjct: 56  -----SYTLTG-LKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143262 cd05854, Ig6_Contactin-2, Sixth Ig domain of contactin-2

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 98  NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFAD 153
           NL L+C A  +  +D+ + W+ +   I   DL++       ++     G L I NA  + 
Sbjct: 2   NLTLQCHASHDPTMDLTFTWSLDDFPI---DLDKPNGHYRRMEVKETIGDLVIVNAQLSH 58

Query: 154 AGEYECVVKSTVGKISTKTTVIVEGPP 180
           AG Y C  ++ V   S   T++V GPP
Sbjct: 59  AGTYTCTAQTVVDSASASATLVVRGPP 85

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC proce sses. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 4  EGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           GG VT+ C+ E  P  P   W ++G+I G  G         L +S V+ +DSG Y+C A
Sbjct: 14 SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGS-SGSTLTLSSVTSEDSGTYTCVA 72

Query: 63 TN 64
          +N
Sbjct: 73 SN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           PP +T+    ++ L C A           W   G ++         + + +     L I+
Sbjct: 1   PPSVTVKEGESVTLSCEASGSP--PPEVTWYKQGGKLLAESGRFSVSRSGST--STLTIS 56

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIV 176
           N +  D+G Y C   ++ G  S+ TT+ V
Sbjct: 57  NVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           PP +T+    ++ L C A           W   G ++         + + +     L I+
Sbjct: 1   PPSVTVKEGESVTLSCEASGSP--PPEVTWYKQGGKLLAESGRFSVSRSGST--STLTIS 56

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIV 176
           N +  D+G Y C   ++ G  S+ TT+ V
Sbjct: 57  NVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 12 CNPEAAPKPKFVWKKDGNIIGSGGRRK----IFENGNLLISPVSRDDSGIYSCTATNVHG 67
          C     P P+  W+KDG       R +    + E+    I  V  +D+G+YSCTA N  G
Sbjct: 5  CAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAG 64

Query: 68 MDESKGRLIVL 78
             +   L VL
Sbjct: 65 SISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 24/74 (32%), Positives = 34/74 (45%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          EG  V   C  +  P+P   W K G+ +    R  +  +G L IS V+  D G Y C A 
Sbjct: 1  EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60

Query: 64 NVHGMDESKGRLIV 77
          N+ G   +  +L V
Sbjct: 61 NIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
          YA +G NVT+ C     P P+  W+K DG++  S           L I  +  +D G Y 
Sbjct: 12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM--SGAVLKIPNIQFEDEGTYE 69

Query: 60 CTATNVHGMDESKGRLIV 77
          C A N+ G D  +GR+ V
Sbjct: 70 CEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
           +++SW P   +    P   Y + +R+K   +++       G+     +    P     TE
Sbjct: 17  VTLSWTPPEDD--GGPITGYVVEYREKGSGDWKEVE-VTPGSETSYTLTGLKP----GTE 69

Query: 362 YEVKVQAINDVGPGPESEVVTI 383
           YE +V+A+N  G  P SE VT+
Sbjct: 70  YEFRVRAVNGGGESPPSESVTV 91

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 97  RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 156
           +++ L C A           W  +G  +        E+      G  L I + S  D+G 
Sbjct: 3   QSVTLTCPAEGNP--VPNITWLKDGKPLP-------ESNRFVASGSTLTIKSVSLEDSGL 53

Query: 157 YECVVKSTVG 166
           Y CV +++ G
Sbjct: 54  YTCVAENSAG 63

Length = 63

>gnl|CDD|143261 cd05853, Ig6_Contactin-4, Sixth Ig domain of contactin-4

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
           L C    +  LD+ + W+ NG  I    D +  E        G L I +     AG+Y C
Sbjct: 5   LPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVC 64

Query: 160 VVKSTVGKISTKTTVIVEGPP 180
           +V+++V K+S    +IV GPP
Sbjct: 65  MVQTSVDKLSAAADLIVRGPP 85

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 99  LQLRCSAHTEELLDVAYIWTHNGVRIGN-MDLNELETPNINIDGGLLEITNASFADAGEY 157
           + L C A       +   W  NG  + + +      +   +     L I+N +  D+G Y
Sbjct: 1   VTLTCLASGPPPPTI--TWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 158 ECVVKSTVGKISTKTT 173
            CV  ++ G +S   T
Sbjct: 59  TCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGN-LLISPVSRDDSGIYS 59
          A  G +VT+ C+ +  P+P   W KDG  I SG  +  F E+G+ + I  V + D   Y+
Sbjct: 15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYT 74

Query: 60 CTATNVHGMDESKGRLIV 77
          C A N  G  E++  L V
Sbjct: 75 CIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 9  TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNV 65
          ++ C+ E  P P+  W K+G  I     +++    N   L IS V  +D+G Y+C A N 
Sbjct: 2  SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Query: 66 HGMDESKGRLIV 77
           G+DE    L V
Sbjct: 62 AGVDEDISSLFV 73

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 8  VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 67
          V I C+ +  P+P   W KDG  +   G+  I   G L I  V   D G Y C A N  G
Sbjct: 1  VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 8  VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNV 65
          VT+ C+ +  P+P + W +DG  +  G       +    L +     DDSG+Y C A N 
Sbjct: 1  VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 66 HG 67
           G
Sbjct: 61 FG 62

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 5  GGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          G   T+ C     P+P   W   DG +I +  R  +++NG L I   +  D+G ++C A+
Sbjct: 1  GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 64 NVHGMDESKGRL 75
          N  G  E+   +
Sbjct: 61 NAAG--EATATV 70

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 6  GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS-PVSRDDSGIYSCTATN 64
          G V++ C   A P P + W+K+   I     R     GNL+I+ P    D+G Y C  +N
Sbjct: 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSN 79

Query: 65 VHGMDESK 72
          ++G   S+
Sbjct: 80 IYGKVRSR 87

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
          G    + C  E  P+P   W+ +G  I       RR++   G L++S V  +D+ +Y C 
Sbjct: 1  GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD-GGTLILSNVQPNDTAVYQCN 59

Query: 62 ATNVHG 67
          A+NVHG
Sbjct: 60 ASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 174
           W  +G       L   +   +  +GG   L I+N    D G+Y CV  ++ G+      +
Sbjct: 34  WFKDGQ-----PLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Query: 175 IV 176
            V
Sbjct: 89  TV 90

Length = 90

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDG--NII------GSGGRRKIFENGNLLISPVSRDDSG 56
          G  VT  C     P+P   W+K+G  N++       S  R  + + G+L I+ V R D G
Sbjct: 1  GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 57 IYSCTATNVHGMDESKGRLIV 77
           Y C   NV G   +K  L V
Sbjct: 61 YYICQTLNVAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 18 PKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKG 73
          P P   W KDG  +   GR +I E       L+I    R DSG Y+ T  N  G   +  
Sbjct: 12 PTPTVTWSKDGKPLKLSGRVQI-ETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70

Query: 74 RLIV 77
           + V
Sbjct: 71 NVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           +++SWEP P +      + Y++ +R++     +                +      TEYE
Sbjct: 17  VTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNV-----TPSSTSYTLTGLKPGTEYE 71

Query: 364 VKVQAINDVGPG 375
            +V+A+N  G G
Sbjct: 72  FRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 15/84 (17%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFENGNLLISPVSRD 53
          YA +G NVT+ C     P P   W+K          I  SG   KIF         +  +
Sbjct: 12 YALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFN--------IQPE 63

Query: 54 DSGIYSCTATNVHGMDESKGRLIV 77
          D G Y C A N+ G D+ + R+ V
Sbjct: 64 DEGTYECEAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 6  GNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLIS-PVSRDDSGIYSCTAT 63
          G V++ C    +P P + W  +G  I      R     GNL+IS P    D+G Y C A+
Sbjct: 20 GKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS 79

Query: 64 NVHGM 68
          N+ G 
Sbjct: 80 NIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 7  NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 66
          ++   C     P P   W K+G+++      KI +  NL +  + + D G Y C A N  
Sbjct: 1  DIVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDV 60

Query: 67 GMDESKGRLIV 77
          G  ++  +LI+
Sbjct: 61 GNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSG 56
             EGG  TI C  E +P PK  W   G I+    R    E      NL +S ++ +   
Sbjct: 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ-TRTDTLETTVDIYNLQLSNITSETQT 69

Query: 57 IYSCTATNVHGMDESK 72
            +CTA N  G     
Sbjct: 70 TVTCTAENPVGQANVS 85

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 18 PKPKFVWKKDGNIIGSGGR------RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 71
          P  +F W KDG  +    +      R   +N  L I+     DSG Y+C   N+ G D  
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71

Query: 72 KGRL 75
             +
Sbjct: 72 TANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 99  LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 158
           L L+C A T E   + + W  +G  +   +               L+I  A  AD+GEY 
Sbjct: 1   LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYT 59

Query: 159 CVVKSTVGKISTKTTV 174
           CVV++ +G  +    V
Sbjct: 60  CVVENILGNDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 8  VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 62
          V + C   A P P+  WKK+  ++     R      N     LLI   +++D+G Y+ +A
Sbjct: 1  VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 63 TNVHGMDESKGRLIV 77
           N  G+     RL V
Sbjct: 61 VNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 4  EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           G +V+  C  ++ +P    VW + G  + S        NG L I  V   D+G Y CT 
Sbjct: 15 PGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDF---NGILTIRNVQLSDAGTYVCTG 71

Query: 63 TNVHGMDESKGRLI 76
          +N+   DE+   L 
Sbjct: 72 SNMLDTDEATATLY 85

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 6  GNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLIS-PVSRDDSGIYSCTAT 63
            VT+ C   A+P   + WK +G  I      R     GNL+I+ P    D+G Y C A 
Sbjct: 20 EKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI 79

Query: 64 NVHG 67
          N  G
Sbjct: 80 NRCG 83

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
          G N  + C+P++    + VWK DG ++     + +     LLI   S  D+G Y C
Sbjct: 11 GNNAELKCSPKSN-LARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQC 65

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloprotease-dependent process. Sem4D may mediate its effects in its membrane bound form, and/or its cleaved form. Length = 87

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEF-QSETLKEYGNVGIAVVR--IPSEFYYT 360
           L++SW P P    N P   Y++ +R  N  E  +  T+   G      +    P     T
Sbjct: 16  LTLSWSPPPG---NGPITGYEVEYRPVNGGEEWKEITVP--GTTTSYTLTGLKP----GT 66

Query: 361 EYEVKVQAINDVGPGPES 378
           EYEV+VQA+N  G GP S
Sbjct: 67  EYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTA 62
          G    + C  E  P P   W  +G  I       R+   +G L+++ V   D+ +Y C A
Sbjct: 1  GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 63 TNVHG 67
           N HG
Sbjct: 61 RNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 99  LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEY 157
           L LRC     E   + + W  NG  IG  +  +             L+I+ AS AD GEY
Sbjct: 1   LVLRCET-VSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEY 59

Query: 158 ECVVKSTVGKISTKTTV 174
           +C+V S +G  S    V
Sbjct: 60  KCMVSSKLGNDSVTANV 76

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76

>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of nephrin

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 2   AGEGGNV-TIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KIFENGN-----LLISPVSR 52
            G+G +   + C  +  P+ +F W K+G  +  G  R        G      L I  VS 
Sbjct: 19  RGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSA 78

Query: 53  -DDSGIYSCTATNVHGMDESKGRLIVLHGP 81
             D  +++CTA N  G D    +L+    P
Sbjct: 79  ALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the podocytes. Length = 109

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 99  LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
           LQLRC        DV  I WT +GV++G       E     I G  ++I +A   D+G Y
Sbjct: 12  LQLRCRLRD----DVQSINWTKDGVQLG-------ENNRTRITGEEVQIKDAVPRDSGLY 60

Query: 158 ECVVKSTVGKISTKTTVIV 176
            CV  S  G  +T  +V V
Sbjct: 61  ACVTSSPSGSDTTYFSVNV 79

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
           L+I N S  D GEY C   +++G      +V VE
Sbjct: 38  LKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 98  NLQLRCSAHTEELLDVAYIWTHNG-VRIGNMDLNELETPNINIDGGLLEITNASFADAGE 156
           ++ L CS      +DV   W   G     +  +   E    +     L I+N +  D+G 
Sbjct: 3   SVTLTCSVSGPPQVDV--TWFKEGKGLEESTTVGTDENRVSS---ITLTISNVTPEDSGT 57

Query: 157 YECVV 161
           Y CVV
Sbjct: 58  YTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 145
            + P  ++ +   + L CSA           W  NG   G               G  L 
Sbjct: 5   TVSPSPSVTSGGGVTLTCSA-EGGPPPPTISWYRNGSISGGSGGL-------GSSGSTLT 56

Query: 146 ITNASFADAGEYECVVKS 163
           +++ +  D+G Y CV  +
Sbjct: 57  LSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 8  VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 62
          V + C     P P+  WKK+   +     R      N     LLI   +++D+G Y+ +A
Sbjct: 1  VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60

Query: 63 TNVHGMDESKGRLIV 77
           N  G+     RL V
Sbjct: 61 KNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 9  TIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 66
          T+ C     P P+  W KD   +   S GR K   +G L I      D G Y C ATN  
Sbjct: 2  TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61

Query: 67 G 67
          G
Sbjct: 62 G 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143204 cd05727, Ig2_Contactin-2-like, Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 4  EGGNVTIFCNPEA-APKPKFVWKKD--GNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYS 59
          EG  V +FC+P    P   + W  +   N I   GRR + + NGNL I+ V   D G YS
Sbjct: 17 EGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYS 76

Query: 60 CTAT 63
          C  +
Sbjct: 77 CFVS 80

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 96

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 1  YAGEGGNVTIFCNPE------AAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRD 53
                   I C P+          P   W KD  ++   G RK F  G+ LLI  V+ +
Sbjct: 6  ILFSTKGGKIVC-PDLDDFKNENTLPPVQWYKDCKLLE--GDRKRFVKGSKLLIQNVTEE 62

Query: 54 DSGIYSCTATNVH 66
          D+G Y+C  T  H
Sbjct: 63 DAGNYTCKLTFTH 75

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 16/80 (20%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKK------------DGNIIGSGGRRKIFENGNLLISP 49
          A E   +T+ C  E  P P+  W++            DG I+  G  R      +L +  
Sbjct: 13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV----SSLTLKD 68

Query: 50 VSRDDSGIYSCTATNVHGMD 69
          V   D+G Y C A+N  G D
Sbjct: 69 VQLTDAGRYDCEASNRIGGD 88

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	626
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.92
PHA02785	326	IL-beta-binding protein; Provisional	99.9
PHA02826	227	IL-1 receptor-like protein; Provisional	99.88
KOG4194|consensus	873		99.86
PHA02785	326	IL-beta-binding protein; Provisional	99.84
KOG0196|consensus	996		99.81
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.79
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.77
KOG0196|consensus	996		99.77
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.74
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.73
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.72
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.71
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.7
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.7
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.7
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.69
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.68
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.68
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.68
KOG4258|consensus	1025		99.67
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.67
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.67
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.67
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.67
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.66
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.66
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.66
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.66
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.66
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.65
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.64
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.64
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.64
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.63
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.63
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.63
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.63
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.63
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.63
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.63
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.63
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.63
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.62
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.61
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.61
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.61
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.61
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.61
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.61
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.6
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.6
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.6
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.6
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.59
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.59
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.59
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.59
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.59
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.59
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.58
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.58
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.58
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.57
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.57
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.57
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.57
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.57
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.55
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.55
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.54
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.54
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.53
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.53
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.53
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.53
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.53
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.52
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.52
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.51
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.51
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.51
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.51
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.5
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.5
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.49
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.49
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.49
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.48
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.48
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.47
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.46
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.46
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.46
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.46
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.46
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.46
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.45
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.45
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.45
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.45
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.44
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.43
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.43
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.42
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.42
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.42
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.42
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.41
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.41
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.41
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.4
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.4
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.39
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.39
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.39
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.39
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.39
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.38
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.38
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.38
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.38
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.38
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.37
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.37
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.37
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.37
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.37
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.36
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.36
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.35
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.35
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.35
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.35
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.35
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.35
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.35
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.34
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.34
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.34
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.34
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.33
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.33
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.33
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.32
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.32
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.31
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.31
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.31
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.31
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.3
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.3
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.3
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.29
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.29
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.28
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.28
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.27
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.26
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.25
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.25
PHA02826	227	IL-1 receptor-like protein; Provisional	99.24
KOG3515|consensus	741		99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.22
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.21
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.2
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.2
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.19
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.19
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.18
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.17
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.17
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.16
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.16
KOG4258|consensus	1025		99.15
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.15
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.15
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.14
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.13
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.13
KOG3515|consensus	741		99.13
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.12
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.11
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.11
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.11
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.09
smart00409	86	IG Immunoglobulin.	99.09
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.09
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.08
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.08
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.05
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.05
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.04
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.03
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.02
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.01
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.99
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.99
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.94
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.94
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.94
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.93
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.9
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.88
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.87
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.86
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.85
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.85
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.83
PHA03376	221	BARF1; Provisional	98.79
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.79
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.78
KOG4802|consensus	516		98.78
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.76
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.74
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.72
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.72
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.71
smart00409	86	IG Immunoglobulin.	98.71
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.71
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.7
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.69
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.68
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.67
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.67
KOG4802|consensus	516		98.65
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.63
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.63
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.61
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.6
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.59
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.59
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.56
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.56
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.56
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.53
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.52
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.52
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.51
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.49
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	98.49
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.47
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.47
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.47
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.47
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.45
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.45
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.44
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.43
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.43
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.41
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.39
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.39
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.38
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.38
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.36
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.36
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.36
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.35
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.35
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.33
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.33
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.33
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.33
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.3
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.3
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.3
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	98.25
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.25
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.23
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.23
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.22
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.21
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.21
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.17
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.17
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.16
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.16
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.15
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.15
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.15
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.15
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.14
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.12
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.12
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.11
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.1
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	98.09
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.07
KOG3632|consensus	1335		98.06
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.06
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.05
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.04
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.02
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.01
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.01
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.0
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.98
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.97
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.97
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.96
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.95
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.91
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.91
PHA03376	221	BARF1; Provisional	97.9
smart00407	75	IGc1 Immunoglobulin C-Type.	97.89
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.87
KOG4367|consensus	699		97.83
KOG4228|consensus	1087		97.77
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.76
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.76
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.74
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.71
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.7
KOG3632|consensus	1335		97.69
KOG0613|consensus	1205		97.69
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	97.69
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.67
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.66
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.64
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.62
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.61
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.61
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.59
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.59
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.59
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.58
smart00406	81	IGv Immunoglobulin V-Type.	97.56
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.56
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.55
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.55
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.55
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.53
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.53
KOG4152|consensus	830		97.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.52
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.5
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.47
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.47
smart00407	75	IGc1 Immunoglobulin C-Type.	97.43
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.4
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.39
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.39
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.38
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.35
KOG4367|consensus	699		97.32
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.31
KOG4152|consensus	830		97.3
KOG0613|consensus	1205		97.27
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.27
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	97.26
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.26
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	97.22
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.21
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.19
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.18
KOG1480|consensus	909		97.16
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.15
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.14
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.14
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.08
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.06
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.05
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.05
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.98
KOG1480|consensus	909		96.94
smart00406	81	IGv Immunoglobulin V-Type.	96.9
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.9
PHA03271	490	envelope glycoprotein C; Provisional	96.89
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.88
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.86
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.85
PHA03273	486	envelope glycoprotein C; Provisional	96.84
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.83
PHA03273	486	envelope glycoprotein C; Provisional	96.81
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.79
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.78
PHA03269	566	envelope glycoprotein C; Provisional	96.77
PHA03270	466	envelope glycoprotein C; Provisional	96.76
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.76
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.72
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.72
PHA03271	490	envelope glycoprotein C; Provisional	96.7
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.63
KOG4597|consensus	560		96.62
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.61
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.6
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.53
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.51
KOG4806|consensus	454		96.51
PHA02633	63	hypothetical protein; Provisional	96.5
PHA03270	466	envelope glycoprotein C; Provisional	96.37
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	96.09
KOG4228|consensus	1087		96.09
PHA02633	63	hypothetical protein; Provisional	96.05
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.05
PHA03269	566	envelope glycoprotein C; Provisional	95.82
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	95.75
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.67
PHA03042	286	CD47-like protein; Provisional	95.39
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.23
PHA02982	251	hypothetical protein; Provisional	95.04
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	94.89
PHA02982	251	hypothetical protein; Provisional	94.89
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	94.68
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.65
PHA03042	286	CD47-like protein; Provisional	94.33
PHA03282	540	envelope glycoprotein E; Provisional	94.26
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	94.18
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.03
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	93.92
KOG1026|consensus	774		93.77
KOG4806|consensus	454		93.77
COG4733	952	Phage-related protein, tail component [Function un	93.67
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	93.57
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.57
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	93.43
COG4733	952	Phage-related protein, tail component [Function un	92.97
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	92.72
KOG4597|consensus	560		92.67
PLN02533	427	probable purple acid phosphatase	92.54
PHA03052	69	Hypothetical protein; Provisional	91.98
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	91.42
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.28
PHA03283	542	envelope glycoprotein E; Provisional	91.05
PHA02865	338	MHC-like TNF binding protein; Provisional	90.94
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	90.91
PHA03052	69	Hypothetical protein; Provisional	90.85
PLN02533	427	probable purple acid phosphatase	90.07
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	89.44
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	88.21
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	87.85
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	86.86
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	85.56
PF14292	122	SusE: SusE outer membrane protein	84.71
PHA02865	338	MHC-like TNF binding protein; Provisional	83.56
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	83.24
PHA03189	348	UL14 tegument protein; Provisional	81.94
KOG1225|consensus	525		81.08

>KOG3513|consensus

Probab=100.00  E-value=5.7e-72  Score=556.79  Aligned_cols=578  Identities=36%  Similarity=0.606  Sum_probs=491.8

Q ss_pred             CCCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +|..|.++.|.|...+.|.|.++|.|++..+..++|+++..+|+|.|.+++.+|+|.|+|.|.|..|.+.+.+.|.|..+
T Consensus       437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~  516 (1051)
T KOG3513|consen  437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA  516 (1051)
T ss_pred             EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecC
Confidence            46789999999999999999999999999778899999999999999999999999999999999999999999999988


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC---CeEEEeecCCCCCEeE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GLLEITNASFADAGEY  157 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y  157 (626)
                      +.+.. +|.+..+..|+.++|.|.+.-++.+++.+.|.+||..+....   .........+   +.|.|.++++.|+|.|
T Consensus       517 tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~---~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y  592 (1051)
T KOG3513|consen  517 TRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP---DGDHFEINDGSDSGRLTIANVSLEDSGKY  592 (1051)
T ss_pred             ceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC---CCCceEEeCCcCccceEEEeeccccCceE
Confidence            88877 899999999999999999999999999999999999987653   1122222222   3599999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeee
Q psy12061        158 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV  237 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~  237 (626)
                      .|+|+....+.++.+.+.|.++|.||.++.+...+.+++.|+|+++.++..++..|.|+.+......|..+.. ..... 
T Consensus       593 ~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~-vp~~~-  670 (1051)
T KOG3513|consen  593 TCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTT-VPGNI-  670 (1051)
T ss_pred             EEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeE-CCCcc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998873 22211 


Q ss_pred             eccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcc
Q psy12061        238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN  317 (626)
Q Consensus       238 ~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~  317 (626)
                         .+..+..+.+ |.|..+|+|||+|.|..|.+.+|.++...+|.+..|...|.++.......+.+.|.|++.+....+
T Consensus       671 ---~~~~sa~vv~-L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qN  746 (1051)
T KOG3513|consen  671 ---TGDESATVVN-LSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQN  746 (1051)
T ss_pred             ---cCccceeEEc-cCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHcc
Confidence               2222355666 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceEEEEEEecCCC-cceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCc
Q psy12061        318 APNIYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG  396 (626)
Q Consensus       318 ~~~~~y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~  396 (626)
                      ++..+|+|.|+..+.. .|+...+... +.....+..+...|.+.|.++|+|.|..|.|+.|....+.+.++.|+.+|..
T Consensus       747 G~gfgY~Vswr~~g~~~~W~~~~v~~~-d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~  825 (1051)
T KOG3513|consen  747 GPGFGYRVSWRPQGADKEWKEVIVSNQ-DQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTK  825 (1051)
T ss_pred             CCCceEEEEEEeCCCCcccceeEeccc-CCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCcc
Confidence            9999999999999966 8987766532 2345566666778899999999999999999999999999999999999999


Q ss_pred             eEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCC
Q psy12061        397 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG  476 (626)
Q Consensus       397 ~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g  476 (626)
                      +.+...+.+.+.|+|+++...+    |.+.||.|+||................+.++..|.||++.|.|.|.|+|+|.+|
T Consensus       826 ~~~~~~s~s~~~v~W~~~~~~n----G~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG  901 (1051)
T KOG3513|consen  826 LSAKPLSSSEVNLSWKPPLWDN----GKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAG  901 (1051)
T ss_pred             ceeecccCceEEEEecCcCccC----CccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCC
Confidence            9999999999999999986543    889999999999998854444444557788899999999999999999999999


Q ss_pred             CCCCCccEEEeecCCCCCC----CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCc
Q psy12061        477 EGPESERYLERTYRKAPQK----PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN  552 (626)
Q Consensus       477 ~s~~s~~~~~~t~~~~p~~----~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~  552 (626)
                      .|+.|.....+|....|+.    +|.++ +.......+.|.|....+......+.+|.|.|+...............  .
T Consensus       902 ~Gp~s~~~~~tt~k~pPs~~~~~p~g~~-~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~~~~~~~~~~~~t~~~--~  978 (1051)
T KOG3513|consen  902 GGPASSEENVTTKKAPPSQVDIAPPGNF-IWKFSASILLLLWLLVSAFENESEVGGYKVLYREDLQNDIEIILTMKL--D  978 (1051)
T ss_pred             CCCCccceeccccCCCCcccccCCCcce-EEeeeeeEEEEEEeeEEEEeecccCcceEEEEeecccCCceeEecccc--c
Confidence            9999999888888877764    55554 566778899999998777777778999999988776653221111111  1


Q ss_pred             cceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccccccc
Q psy12061        553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK  598 (626)
Q Consensus       553 ~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~~~~  598 (626)
                      ...-....+  +..|.++|++.+..|.|..+++.....+.......
T Consensus       979 ~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~~s~~~~~~~~ 1022 (1051)
T KOG3513|consen  979 AEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISIDSLGSYGTMD 1022 (1051)
T ss_pred             ccccCcccc--CCcceeEeccccCCCCCCcCCccccccccCcCCCC
Confidence            111122333  26799999999999999988877666555544333

>KOG3513|consensus

Probab=100.00  E-value=2.6e-67  Score=523.63  Aligned_cols=563  Identities=24%  Similarity=0.391  Sum_probs=436.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc---EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~---~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +..|++++|.|.+.|.|.|+|+|+|||.+|...+|   +.+ .+|.|+|.+|+.+|+|.|+|.|+|..|...+.|.|.|.
T Consensus       343 ~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~  421 (1051)
T KOG3513|consen  343 ADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-DDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL  421 (1051)
T ss_pred             ecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-eCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence            45799999999999999999999999999987666   665 57889999999999999999999999999999999998


Q ss_pred             eC-CceeeeCCCc-eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCE
Q psy12061         79 HG-PSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAG  155 (626)
Q Consensus        79 ~~-p~~~~~~~~~-~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g  155 (626)
                      .. |.+...+-.. ..+..|.++.|.|...+.|.|  .+.|.|++..+..+       .|+.+ .+++|.|.+++.+|+|
T Consensus       422 a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~~~~~-------~r~~i~edGtL~I~n~t~~DaG  492 (1051)
T KOG3513|consen  422 ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP--KVSWLKGGEKLLQS-------GRIRILEDGTLEISNVTRSDAG  492 (1051)
T ss_pred             ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc--eEEEEcCCcccccC-------ceEEECCCCcEEecccCcccCc
Confidence            85 6655543333 567899999999999999987  45899999854443       67776 8999999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCC---CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecce
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPG---LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHV  232 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~  232 (626)
                      .|+|.|.|..|.+...+.|.|..++.   +|.+..  .....++.|.|+...+.   .+.-.+.|..++. .|.......
T Consensus       493 ~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~--v~~g~~v~l~Ce~shD~---~ld~~f~W~~nG~-~id~~~~~~  566 (1051)
T KOG3513|consen  493 KYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD--VKVGESVTLTCEASHDP---SLDITFTWKKNGR-PIDFNPDGD  566 (1051)
T ss_pred             EEEEEEEcccCccceEEEEEEecCceEEeccchhh--hccCceEEEEeecccCC---CcceEEEEEECCE-EhhccCCCC
Confidence            99999999999999999999998875   343322  23356677777754332   2222233333221 111111111


Q ss_pred             eeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCC
Q psy12061        233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLP  312 (626)
Q Consensus       233 ~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~  312 (626)
                      .......... ..+.+.+ +...+.+.|.|+|..... +........++.    |+.||.++.+...+.+++.|+|++  
T Consensus       567 ~~~~~~~~~~-g~L~i~n-v~l~~~G~Y~C~aqT~~D-s~s~~A~l~V~g----pPgpP~~v~~~~i~~t~~~lsW~~--  637 (1051)
T KOG3513|consen  567 HFEINDGSDS-GRLTIAN-VSLEDSGKYTCVAQTALD-SASARADLLVRG----PPGPPPDVHVDDISDTTARLSWSP--  637 (1051)
T ss_pred             ceEEeCCcCc-cceEEEe-eccccCceEEEEEEEeec-chhcccceEEec----CCCCCCceeEeeeccceEEEEeec--
Confidence            1111111111 3566666 777777778888776433 222232223333    335666899999999999999998  


Q ss_pred             CCCcccCcceEEEEEEecCCCcceeeeeeeeccee-eEEEEeCCCcceeEEEEEEEEecCCCCCCCCccE-EEEccCCCC
Q psy12061        313 REKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV-TIFSAEDMP  390 (626)
Q Consensus       313 ~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~-~~~t~~~~p  390 (626)
                      ..+.+++|..|.|+.+..-...|+... ..+.... ..+.++-+|.|...|+|||.|.|..|.|.+|.+. ..+|.+++|
T Consensus       638 g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P  716 (1051)
T KOG3513|consen  638 GSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP  716 (1051)
T ss_pred             CCCCCCCceEEeEEecCCCCCcceEee-ECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC
Confidence            567778899999999988889999887 3332222 1345677999999999999999999999998876 578999999


Q ss_pred             CCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCccceEEEe--CCccCceEEE
Q psy12061        391 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTTRNWALIV--GLQPDTKYYV  467 (626)
Q Consensus       391 ~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~v  467 (626)
                      ...|.+++......+.+.|.|++.....++  |+-.+|+|.|+..+.. .+.... +.......+.+.  ...|++.|.+
T Consensus       717 ~~~P~nv~g~g~~~~eLvItW~Pl~~~~qN--G~gfgY~Vswr~~g~~~~W~~~~-v~~~d~~~~V~~~~st~~~tpyev  793 (1051)
T KOG3513|consen  717 SVNPSNVKGGGGSPTELVITWEPLPEEEQN--GPGFGYRVSWRPQGADKEWKEVI-VSNQDQPRYVVSNESTEPFTPYEV  793 (1051)
T ss_pred             ccCCccccccCCCCceEEEEeccCCHHHcc--CCCceEEEEEEeCCCCcccceeE-ecccCCceEEEcCCCCCCcceeEE
Confidence            999999999999999999999998876555  8899999999999888 444333 333333335444  4456999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI  547 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~  547 (626)
                      .|+|+|..|.|+.|....+.+.++.|+.+|..+.+...+.+.+.|+|+  ++...||.+++|.|.||..+....... ..
T Consensus       794 KVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~--~~~~~nG~l~gY~v~Y~~~~~~~~~~~-~~  870 (1051)
T KOG3513|consen  794 KVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWK--PPLWDNGKLTGYEVKYWKINEKEGSLS-RV  870 (1051)
T ss_pred             EEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEec--CcCccCCccceeEEEEEEcCCCccccc-ce
Confidence            999999999999999999999999999999999999999999999999  566677999999999998877643333 34


Q ss_pred             eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecccccc
Q psy12061        548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEF  597 (626)
Q Consensus       548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~~~  597 (626)
                      ...++.++..|.||++.+.|.|.|+|+|++|.|+.|.... .++.+.++.
T Consensus       871 ~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~-~tt~k~pPs  919 (1051)
T KOG3513|consen  871 QIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEEN-VTTKKAPPS  919 (1051)
T ss_pred             eecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCcccee-ccccCCCCc
Confidence            4458999999999999999999999999999999886543 455554444

>KOG4221|consensus

Probab=100.00  E-value=3.4e-66  Score=511.75  Aligned_cols=550  Identities=25%  Similarity=0.413  Sum_probs=453.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +++|+++.|+|.+.|.|.|.|.|.|||..|+.+ .|+.+...++|.|.+++.+|+|.|+|.|.|......+.+.|.|..+
T Consensus       249 v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~  328 (1381)
T KOG4221|consen  249 VVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP  328 (1381)
T ss_pred             cccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC
Confidence            579999999999999999999999999999855 4555566778999999999999999999998888899999999888


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.++. .|..+...++.++.|+|.+.+.|.|  .+.|+|||..+..++.     .++. .++.|+|..+-..|.|.|+|.
T Consensus       329 P~~~~-~p~~l~A~e~~die~ec~~~g~p~p--~v~w~kNgd~~ipsdy-----~ki~-~~~~lrIlgi~~sdeg~yQcv  399 (1381)
T KOG4221|consen  329 PGFTK-APTTLVAHESMDIEFECPVSGKPIP--TVRWYKNGDRIIPSDY-----FKIV-GGGNLRILGIVKSDEGFYQCV  399 (1381)
T ss_pred             CCCCC-CCcceeeeeccceeEeCCCCCCCcc--eEEEEecCcccCcccc-----eEec-CCCCcEEEEEecccchhhhhh
Confidence            87776 5788889999999999999999877  4589999999887642     2222 344499999999999999999


Q ss_pred             EEeCCCceEEEEEEEEeCC---------CCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecc
Q psy12061        161 VKSTVGKISTKTTVIVEGP---------PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH  231 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~~~---------P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~  231 (626)
                      +.|..|.+...+.+.+...         |..|..+.+.....+.+.++|.+|...+.++..|.+.+...+ ..|.+....
T Consensus       400 aen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~-~~rer~~~t  478 (1381)
T KOG4221|consen  400 AENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEG-DVRERLQNT  478 (1381)
T ss_pred             hccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCC-chhhhheec
Confidence            9999999999888865443         446778888888899999999988877888999998887653 334332221


Q ss_pred             eeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeC
Q psy12061        232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPL  311 (626)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~  311 (626)
                      .       ..+ ....+.+ |.+.+.|.|+|+|.|..|.+.++.+. .+.+.++   .++. +.+...+..++.+.|++ 
T Consensus       479 s-------s~g-~~~tv~n-l~p~t~Y~~rv~A~n~~g~g~sS~pL-kV~t~pE---gp~~-~~a~ats~~ti~v~Wep-  543 (1381)
T KOG4221|consen  479 S-------SPG-IQVTVQN-LSPLTMYFFRVRAKNEAGSGESSAPL-KVTTQPE---GPVQ-LQAYATSPTTILVTWEP-  543 (1381)
T ss_pred             c-------CCc-eEEEeee-cccceeEEEEEeccCcccCCccCCce-EEecCCC---CCcc-ccccccCcceEEEEecC-
Confidence            1       123 5667777 99999999999999999999888886 4455444   2333 88888889999999998 


Q ss_pred             CCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCC
Q psy12061        312 PREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ  391 (626)
Q Consensus       312 ~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~  391 (626)
                       |...++++++|++.|...+.+.|.....      +...++|.+|++.+.|.|+|.|.|..|.|..|..+.+.|..+.|.
T Consensus       544 -P~~~n~~I~~yk~~ys~~~~~~~~~~~~------n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Ps  616 (1381)
T KOG4221|consen  544 -PPFGNGPITGYKLFYSEDDTGKELRVEN------NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPS  616 (1381)
T ss_pred             -CCCCCCCceEEEEEEEcCCCCceEEEec------CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCC
Confidence             6678999999999999887666554432      446788999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEE
Q psy12061        392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA  471 (626)
Q Consensus       392 ~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a  471 (626)
                      .||.|+++...++++|.|+|.+|.....  +|.+.+|.|+|............ ....+..++.+.+|+|++.|.|+|.|
T Consensus       617 aPP~Nl~lev~sStsVrVsW~pP~~~t~--ng~itgYkIRy~~~~~~~~~~~t-~v~~n~~~~l~~~Lep~T~Y~vrIsa  693 (1381)
T KOG4221|consen  617 APPQNLSLEVVSSTSVRVSWLPPPSETQ--NGQITGYKIRYRKLSREDEVNET-VVKGNTTQYLFNGLEPNTQYRVRISA  693 (1381)
T ss_pred             CCCcceEEEecCCCeEEEEccCCCcccc--cceEEEEEEEecccCccccccee-ecccchhhhHhhcCCCCceEEEEEEE
Confidence            9999999999999999999999987655  49999999999766655433222 33336677999999999999999999


Q ss_pred             eeCCCCCCCCccEEEeecCCCCC----CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee
Q psy12061        472 YNNAGEGPESERYLERTYRKAPQ----KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI  547 (626)
Q Consensus       472 ~~~~g~s~~s~~~~~~t~~~~p~----~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~  547 (626)
                      .+..|.|++|++..+.|....+.    .+|..|++. ...+++.+.|+  ||.+.+-.+.+|.|.|+...+..  ....+
T Consensus       694 ~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~--Pp~~~~~~vrgY~ig~r~g~~~p--~~~tI  768 (1381)
T KOG4221|consen  694 MTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWT--PPPHPNIVVRGYKIGYRPGSGIP--DTGTI  768 (1381)
T ss_pred             eccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeC--CCCChhhhhcceEEeeecccCCC--CCccE
Confidence            99999999999999999764332    356666544 46789999999  77778889999999886433321  25567


Q ss_pred             eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEee
Q psy12061        548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~  591 (626)
                      ..+.....|.|..|+|+..|.++++|+|..|+|.+......++.
T Consensus       769 rl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~  812 (1381)
T KOG4221|consen  769 RLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRS  812 (1381)
T ss_pred             EecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeecc
Confidence            78888999999999999999999999999999997766555553

>KOG4221|consensus

Probab=100.00  E-value=2e-61  Score=478.04  Aligned_cols=547  Identities=23%  Similarity=0.378  Sum_probs=432.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~   80 (626)
                      +-+|+++.|.|.+.+.|.|.+.|.||..+|..++|+.++.+|.|.|.+++..|.|.|+|.|.++.-... ..+.|.|...
T Consensus       152 ~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~  231 (1381)
T KOG4221|consen  152 LLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSD  231 (1381)
T ss_pred             EecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCC
Confidence            458999999999999999999999999999988899999999999999999999999999998765544 3578888744


Q ss_pred             Cce-----eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCC
Q psy12061         81 PSY-----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA  154 (626)
Q Consensus        81 p~~-----~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~  154 (626)
                      |..     +...|....+..|+++.|.|.+.+.|.|.+  .|+|||..+....      .++.. ..+.|.|.+++..|+
T Consensus       232 ~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v--~Wlrng~~i~~ds------~rivl~g~~slliS~a~~~dS  303 (1381)
T KOG4221|consen  232 PGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSV--KWLRNGEKISVDS------YRIVLVGGSSLLISNATDDDS  303 (1381)
T ss_pred             cccccceeeecCCCccccccCCcEEEEEEecCCCCCce--EEeeCCeeeeecc------eEEEEecccceEEeccccccC
Confidence            422     334578899999999999999999999855  8999999998653      45544 588999999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecC--CCCceEeecce
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW--NSTWFNVSEHV  232 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~w~~~~~~~  232 (626)
                      |.|+|+|.|......+.++|.|..+|..+....-..... +..+.|+.+.. +.++..+......+-  ...|.+...  
T Consensus       304 g~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e-~~die~ec~~~-g~p~p~v~w~kNgd~~ipsdy~ki~~--  379 (1381)
T KOG4221|consen  304 GKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHE-SMDIEFECPVS-GKPIPTVRWYKNGDRIIPSDYFKIVG--  379 (1381)
T ss_pred             ceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeee-ccceeEeCCCC-CCCcceEEEEecCcccCcccceEecC--
Confidence            999999999888889999999999998765554433333 77888887644 347766655443321  133333321  


Q ss_pred             eeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccC----CCCCCCCCCceeEeecCCcCeEEEEE
Q psy12061        233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT----PADKPYQAPSRIGGGGGKIGDLSISW  308 (626)
Q Consensus       233 ~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~----~~~~p~~~p~~~~~~~~~~~~v~l~W  308 (626)
                               +. ...+.. +...++..|+|.|.|+.|..........+..    ....-+.+|..+.+...+.+.+.++|
T Consensus       380 ---------~~-~lrIlg-i~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw  448 (1381)
T KOG4221|consen  380 ---------GG-NLRILG-IVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTW  448 (1381)
T ss_pred             ---------CC-CcEEEE-EecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEee
Confidence                     22 255555 6667777889999999996654433211111    01222456778888888999999999


Q ss_pred             eeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCC
Q psy12061        309 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED  388 (626)
Q Consensus       309 ~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  388 (626)
                      .+  +...++.+..|.+.|+..+..........   ..+ ...++.+|.|.+.|.|+|+|.|..|.+..|..+.+.+..+
T Consensus       449 ~~--p~~~~g~i~~~~v~~~~~~~~rer~~~ts---s~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE  522 (1381)
T KOG4221|consen  449 RP--PAQISGNISTYTVFYKVEGDVRERLQNTS---SPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE  522 (1381)
T ss_pred             cC--ccccCCCcceEEEEEecCCchhhhheecc---CCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC
Confidence            96  44888999999999987763332222211   212 6778899999999999999999999999999999988666


Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                         +++. +.....+..++.+.|++|.-.    |++|++|.+.|...+...+    .....+..+++|.+|+++|.|.|+
T Consensus       523 ---gp~~-~~a~ats~~ti~v~WepP~~~----n~~I~~yk~~ys~~~~~~~----~~~~~n~~e~ti~gL~k~TeY~~~  590 (1381)
T KOG4221|consen  523 ---GPVQ-LQAYATSPTTILVTWEPPPFG----NGPITGYKLFYSEDDTGKE----LRVENNATEYTINGLEKYTEYSIR  590 (1381)
T ss_pred             ---CCcc-ccccccCcceEEEEecCCCCC----CCCceEEEEEEEcCCCCce----EEEecCccEEEeecCCCccceEEE
Confidence               2344 888889999999999999754    3779999999976633322    233455667999999999999999


Q ss_pred             EEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceee
Q psy12061        469 VMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII  548 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~  548 (626)
                      |.|.|..|.|..|..+.+.|..+.|++||.||++...++++|.|.|.+|++...+|.|++|+|+|+....+..  .....
T Consensus       591 vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~--~~~t~  668 (1381)
T KOG4221|consen  591 VVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDE--VNETV  668 (1381)
T ss_pred             EEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccc--cceee
Confidence            9999999999999999999999999999999999999999999999999999999999999999875443321  22334


Q ss_pred             ecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        549 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       549 ~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      ...+.+.+.+.+|+|++.|.|+|.|.|..|.|+.|++.. +.|.
T Consensus       669 v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~-aeT~  711 (1381)
T KOG4221|consen  669 VKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVS-AETP  711 (1381)
T ss_pred             cccchhhhHhhcCCCCceEEEEEEEeccCCCCCccccee-ccCc
Confidence            455889999999999999999999999999999998754 4444

>KOG4222|consensus

Probab=100.00  E-value=3.7e-46  Score=367.93  Aligned_cols=571  Identities=22%  Similarity=0.298  Sum_probs=408.9

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEE
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v   77 (626)
                      +..|+.+.|+|.- .|.|.|.+.|.|+|+++.  ...++.+..+|+|.|.+|...|+|.|.|+|.|-.|+..+. +.|+|
T Consensus       143 ~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv  222 (1281)
T KOG4222|consen  143 AAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSV  222 (1281)
T ss_pred             ccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeee
Confidence            5679999999996 888999999999999987  5577778889999999999999999999999999997665 89999


Q ss_pred             EeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeE
Q psy12061         78 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY  157 (626)
Q Consensus        78 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y  157 (626)
                      ...|-+.. .|.+..|..|..+.|.|.+.|+|.|.+  .|.+++..+....      ..+...+.+|.|..++..|.|.|
T Consensus       223 ~e~P~f~~-rp~~~~v~~g~~~~f~c~v~GdP~P~V--rwkk~~~~~P~~r------y~i~~d~qtl~i~r~tp~deg~y  293 (1281)
T KOG4222|consen  223 QEKPWFWK-RPKDLAVLVGAAAEFDCRVGGDPQPTV--RWKKDDPSLPRSR------YSILDDTQTLRIDRVTPTDEGTY  293 (1281)
T ss_pred             ccCCcccc-ccccceeecccccccccccCCCCCCce--eeeccCCCCCccc------eeeeeccccccccccCCCcccce
Confidence            99888776 588999999999999999999999865  7888777776542      45555678999999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeCCCCCCC-------------ceEEEEEeccceEEEEecCCC------------CC-C---
Q psy12061        158 ECVVKSTVGKISTKTTVIVEGPPGLPG-------------GVQVVEVHKTSATIQWTDGAT------------NG-R---  208 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~~~P~~p~-------------~~~~~~~~~~~~~l~W~~~~~------------~~-~---  208 (626)
                      .|.+.|..|..+..+.++|+.+|..-.             .+.|...+...-.+.|.+...            ++ .   
T Consensus       294 ~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs  373 (1281)
T KOG4222|consen  294 VCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVS  373 (1281)
T ss_pred             eeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceec
Confidence            999999999999999999999886421             123334444555555553210            00 0   


Q ss_pred             ------------cccEEEEEEe----------------------------------------------------ecCCCC
Q psy12061        209 ------------PITHYKIIAR----------------------------------------------------TNWNST  224 (626)
Q Consensus       209 ------------~~~~y~v~~~----------------------------------------------------~~~~~~  224 (626)
                                  .-.+|.+...                                                    ......
T Consensus       374 ~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~  453 (1281)
T KOG4222|consen  374 PTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNIS  453 (1281)
T ss_pred             CCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCch
Confidence                        0011211100                                                    000111


Q ss_pred             ceEeecceeeee-eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCccc----------CCCCCCCCCCce
Q psy12061        225 WFNVSEHVIGKE-VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN----------TPADKPYQAPSR  293 (626)
Q Consensus       225 w~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~----------~~~~~p~~~p~~  293 (626)
                      |.+..-.+.... ........+..+.+ +.-.+.|.|+|.|.+..|.+.++.......          ..+...+.+|..
T Consensus       454 wl~dg~~v~~~d~~~s~~~~~~l~i~d-l~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~  532 (1281)
T KOG4222|consen  454 WLKDGCNVMNPDSRISQQEIGSLRIRD-LKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGT  532 (1281)
T ss_pred             hhhcccccccCCcccceeeeceeeeee-eecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCC
Confidence            221111110000 00011223455555 888899999999999999887765432111          111122345555


Q ss_pred             eEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCC
Q psy12061        294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV  372 (626)
Q Consensus       294 ~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~  372 (626)
                      ..+...+.++++|+|.+.. ..+..++.+|.+++...+ ...|....    .....+.+.|.+|+|+..|.|.|+|.|..
T Consensus       533 p~v~~v~~~~v~LsW~~~s-~sg~vP~s~yiieafs~~~~etw~~ta----~~v~~t~~~I~gL~P~~sylf~vRa~n~~  607 (1281)
T KOG4222|consen  533 PGVVNVSRTSVTLSWQPTS-PSGAVPASGYIIEAFSPDLGETWQTTA----GRVKTTTYAIRGLKPNLSYLFLVRAENEQ  607 (1281)
T ss_pred             CccccCCCceEEecccCCC-CCCccccchhHHHHhhhhhcccccccc----cccccceeeecCcCccceeeeeeeccccc
Confidence            5667778899999999843 246788999999887655 56665432    23355678899999999999999999999


Q ss_pred             CCCCCCccEE-EEccCCCCCCCC------------CceE---EEeeecceEEEEeeeccccccccceeeEEEEEEEEecC
Q psy12061        373 GPGPESEVVT-IFSAEDMPQVAP------------QGVF---SRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED  436 (626)
Q Consensus       373 g~~~~s~~~~-~~t~~~~p~~~p------------~~~~---~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~  436 (626)
                      |.+.++.... ++|.+..+..+-            ..++   ...++.+++.+.|..+...+.   ..|.+|+|.|+...
T Consensus       608 Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~---~~i~g~~I~~r~~~  684 (1281)
T KOG4222|consen  608 GISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGS---QYIQGYRISYRSLG  684 (1281)
T ss_pred             cccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCc---ccccceEEEeccCc
Confidence            9877665442 333322211000            0111   234678899999998775332   67999999998777


Q ss_pred             CCc-cceEEEEecCccceEEEeCCccCceEEEEEEEeeCCC---CCCCCccEEEeecCCCCCCCCceE---EEeeeCCCE
Q psy12061        437 NPE-ETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG---EGPESERYLERTYRKAPQKPPSAV---HIKGINPTT  509 (626)
Q Consensus       437 ~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g---~s~~s~~~~~~t~~~~p~~~p~~l---~~~~~~~~~  509 (626)
                      ... ......+.......+.+.+|.|++.|+|.++.+...|   .|..|+.+.+.|.+..|+.+|..+   +....+.++
T Consensus       685 ~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta  764 (1281)
T KOG4222|consen  685 SQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTA  764 (1281)
T ss_pred             cccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCce
Confidence            621 2222233344445689999999999999999999855   467788889999999999999994   455558899


Q ss_pred             EEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEE
Q psy12061        510 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF  589 (626)
Q Consensus       510 ~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~  589 (626)
                      ..|+|.+++.+..++.+.+|.|........  ........+....+.+|.+|.+|..|.|+|.|.|.+|.|+.+.|..++
T Consensus       765 ~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~t--r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~  842 (1281)
T KOG4222|consen  765 GSVSWAPPPADVQNGILQGYKIECSGGEKT--RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIV  842 (1281)
T ss_pred             eeEEecCCcccccCCcccceeEEeecCccc--cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeee
Confidence            999999987778899999999965433321  112223334677889999999999999999999999999999887655


Q ss_pred             eec
Q psy12061        590 QMG  592 (626)
Q Consensus       590 ~~~  592 (626)
                      .-.
T Consensus       843 ~~~  845 (1281)
T KOG4222|consen  843 FDT  845 (1281)
T ss_pred             cCC
Confidence            533

>KOG4222|consensus

Probab=100.00  E-value=1.7e-37  Score=307.01  Aligned_cols=460  Identities=27%  Similarity=0.378  Sum_probs=355.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      |..|..++|.|.+.|+|.|.+.|.|.|...        ..++|-.+...|+|.|.+|+..|.|.|.|...+..|.....+
T Consensus       327 v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a  406 (1281)
T KOG4222|consen  327 VALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKA  406 (1281)
T ss_pred             cccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccce
Confidence            346889999999999999999999977642        245677777788999999999999999999999999877776


Q ss_pred             EEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEE
Q psy12061         74 RLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEI  146 (626)
Q Consensus        74 ~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i  146 (626)
                      .+.+..      +|.++...+.+.+..++..+.|.|.+.+.|.|.+  .|+++|..+..-+      .++. ...+.|+|
T Consensus       407 ~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i--~wl~dg~~v~~~d------~~~s~~~~~~l~i  478 (1281)
T KOG4222|consen  407 YLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNI--SWLKDGCNVMNPD------SRISQQEIGSLRI  478 (1281)
T ss_pred             eEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCc--hhhhcccccccCC------cccceeeeceeee
Confidence            665543      7788888899999999999999999999998865  8999998887543      3333 35689999


Q ss_pred             eecCCCCCEeEEEEEEeCCCceEEEEEEEEeC---------------CCCCCCceEEEEEeccceEEEEecCCC-CCCcc
Q psy12061        147 TNASFADAGEYECVVKSTVGKISTKTTVIVEG---------------PPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPI  210 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~---------------~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~  210 (626)
                      .++...|.|.|+|.+.+..|+...++.|.|..               .|.+|....+..+..+++.|+|.+... +..++
T Consensus       479 ~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~  558 (1281)
T KOG4222|consen  479 RDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPA  558 (1281)
T ss_pred             eeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCcccc
Confidence            99999999999999999999999999998863               356677778888999999999998765 45788


Q ss_pred             cEEEEEEeec-CCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCC
Q psy12061        211 THYKIIARTN-WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ  289 (626)
Q Consensus       211 ~~y~v~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~  289 (626)
                      ..|.+++... -...|.......         ..+.+.|.. |.|...|.|.|+|.|+.|.+.++..+..+++.+..+..
T Consensus       559 s~yiieafs~~~~etw~~ta~~v---------~~t~~~I~g-L~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~  628 (1281)
T KOG4222|consen  559 SGYIIEAFSPDLGETWQTTAGRV---------KTTTYAIRG-LKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAA  628 (1281)
T ss_pred             chhHHHHhhhhhccccccccccc---------ccceeeecC-cCccceeeeeeeccccccccCCcccCCccccCCCChhh
Confidence            8899876543 457887766543         334566655 99999999999999999999888777666665433211


Q ss_pred             CC------------cee---EeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC--CCcceeeeeeeecceeeEEEE
Q psy12061        290 AP------------SRI---GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN--DTEFQSETLKEYGNVGIAVVR  352 (626)
Q Consensus       290 ~p------------~~~---~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~  352 (626)
                      .-            ..+   .....+..+|.+.|.. +.......+.+|+|.|+..+  ...|....+...   ....+.
T Consensus       629 a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~-~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~---t~~s~v  704 (1281)
T KOG4222|consen  629 AGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTK-DKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVP---TPESVV  704 (1281)
T ss_pred             hhhhHHHHHHhhcccceeeccccccchhheeeeeee-ecccCcccccceEEEeccCccccccccccceecc---CCccee
Confidence            10            011   1234467899999998 34445667899999999876  345555544432   234567


Q ss_pred             eCCCcceeEEEEEEEEecCCC---CCCCCccEEEEccCCCCCCCCCc---eEEEeeecceEEEEeeeccccccccceeeE
Q psy12061        353 IPSEFYYTEYEVKVQAINDVG---PGPESEVVTIFSAEDMPQVAPQG---VFSRGFNSTAINVTWNPIELIRENIRGRLI  426 (626)
Q Consensus       353 ~~~L~p~~~Y~~~v~a~n~~g---~~~~s~~~~~~t~~~~p~~~p~~---~~~~~~~~~si~l~W~~~~~~~~~~~~~i~  426 (626)
                      +.+|.|++.|+|.++-+...|   .|..|....+.|.+..|..+|..   ++....+.+++.|+|.++.....  +|.+.
T Consensus       705 ~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~--ng~~q  782 (1281)
T KOG4222|consen  705 VPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQ--NGILQ  782 (1281)
T ss_pred             ccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCccccc--CCccc
Confidence            899999999999999987744   56778888889999999988988   45556678899999999865444  59999


Q ss_pred             EEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEE
Q psy12061        427 GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLE  486 (626)
Q Consensus       427 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~  486 (626)
                      +|.|........... ..........+.+|.+|.++..|.|+|.+.+.+|.|+.+.....
T Consensus       783 g~ki~~~~~e~tr~h-~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~  841 (1281)
T KOG4222|consen  783 GYKIECSGGEKTRIH-INKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPI  841 (1281)
T ss_pred             ceeEEeecCcccccc-ccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeee
Confidence            999987433321111 11122234456889999999999999999999999987665433

>KOG4194|consensus

Probab=99.92  E-value=1.1e-23  Score=196.29  Aligned_cols=248  Identities=22%  Similarity=0.377  Sum_probs=184.7

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCCEEccC----C-------CcEEEccC-----CcEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDGNIIGS----G-------GRRKIFEN-----GNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~~~i~~----~-------~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      +..|++++|+|.+.+.  .+-+|.|.|+......    +       .|.-.+.+     +-|.+.+|+..|+|.|+|++.
T Consensus       515 al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvt  594 (873)
T KOG4194|consen  515 ALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVT  594 (873)
T ss_pred             hhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEe
Confidence            3469999999999773  3449999998763321    1       11111111     249999999999999999999


Q ss_pred             cCCCCcee-eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE-eccccCCccCCCeeEe--
Q psy12061         64 NVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-IGNMDLNELETPNINI--  139 (626)
Q Consensus        64 n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~--  139 (626)
                      |.+|+..+ .+.|.|...|.|.. .|.++++..|+.+.|.|.+.|.|.|+|  .|.|+|.. +...     ...|..+  
T Consensus       595 N~FGStysqk~KltV~~~PsFtk-tP~dltl~tg~mArl~CaAtG~P~PeI--awqkdggtdFPAA-----~eRRl~Vmp  666 (873)
T KOG4194|consen  595 NHFGSTYSQKAKLTVNQAPSFTK-TPEDLTLRTGQMARLECAATGHPRPEI--AWQKDGGTDFPAA-----RERRLHVMP  666 (873)
T ss_pred             cccCcchhheeEEEeeccCcccc-CcccceeecccceeeeeeccCCCCcce--eehhcCCCCCchh-----hhheeeecC
Confidence            99999776 48999999998876 689999999999999999999999865  89998766 3322     2244433  


Q ss_pred             cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCc--eEEEEEeccceEEEEecCCCCCCcccEEEEEE
Q psy12061        140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIA  217 (626)
Q Consensus       140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~--~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~  217 (626)
                      ++..+-|.|+..+|.|.|+|+|.|.+|..++.+.|.|.+.|.+-..  .+. ..-..++.|+|.....   +..      
T Consensus       667 edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~-V~~get~vlqC~a~~~---~a~------  736 (873)
T KOG4194|consen  667 EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQL-VVVGETLVLQCLAEGA---PAD------  736 (873)
T ss_pred             CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceE-EEecceEEEEEecCCC---CCC------
Confidence            7789999999999999999999999999999999999998875332  233 3345678888874322   221      


Q ss_pred             eecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCcc
Q psy12061        218 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY  270 (626)
Q Consensus       218 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~  270 (626)
                         ....|++....+...+.....+..++.+..+-.-.+.+.|+|.-.|..|.
T Consensus       737 ---pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~  786 (873)
T KOG4194|consen  737 ---PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT  786 (873)
T ss_pred             ---ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence               23467777776666655555555555555546677888899988887664

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.90  E-value=9.8e-22  Score=184.31  Aligned_cols=249  Identities=19%  Similarity=0.207  Sum_probs=157.9

Q ss_pred             CCCCCceEEEEeee-----CCCCCCeeEEEeCCEEccCCCcEEEccCCc-EEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061          1 YAGEGGNVTIFCNP-----EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTATNVHGMDESKGR   74 (626)
Q Consensus         1 ~~~~G~~~~l~C~~-----~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~-L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   74 (626)
                      ++.+|+.+.|.|.+     .|.|.++|+|+|+|...   .+.....+|+ |.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~  113 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN  113 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence            46789999999997     78899999999998532   2444455564 999999999999999999999998888888


Q ss_pred             EEEEeCC-ceeeeCCCceEEecCCcEEEEEEe-----cccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEe
Q psy12061         75 LIVLHGP-SYYEQLPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEIT  147 (626)
Q Consensus        75 l~v~~~p-~~~~~~~~~~~v~~g~~~~l~C~~-----~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~  147 (626)
                      |.|.... ..+...+....+.+|..+.|.|..     .+.|.  ++++|+++.. +..        .++.. .++.|.|.
T Consensus       114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~--~~i~W~k~~~-~~~--------~r~~~~~~~~L~i~  182 (326)
T PHA02785        114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN--ADIIWSGHRR-LRN--------KRLKQRTPGIITIE  182 (326)
T ss_pred             EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCC--ceEEEccCCc-cCC--------cceEecCCCeEEEe
Confidence            8886532 112122334567799999999972     24454  4669998653 221        33333 45789999


Q ss_pred             ecCCCCCEeEEEEEEeCCCceEE----EEEEEEeCCCCCC-----CceEEEEEeccceEEEEecCCCCCCcccEEEEEEe
Q psy12061        148 NASFADAGEYECVVKSTVGKIST----KTTVIVEGPPGLP-----GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR  218 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~~~----~~~l~v~~~P~~p-----~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~  218 (626)
                      +++.+|+|.|+|.|.|..|....    .+.|.|..+..+|     ..+.  ...+..+.|.|....... +. .=.+.|.
T Consensus       183 ~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~--~~~G~~v~L~C~a~g~P~-~~-~~~v~W~  258 (326)
T PHA02785        183 DVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVV--TSIGSNLTIACRVSLRPP-TT-DADVFWI  258 (326)
T ss_pred             ecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEE--ecCCCcEEEEEEEECCCC-CC-CceEEEE
Confidence            99999999999999999887543    3455565433332     2222  233566888887532211 11 0123333


Q ss_pred             ecCCC-CceE-e-ecceeeeeeeccC------CceeEEEEeeccCCceEEEEEEEecCCc
Q psy12061        219 TNWNS-TWFN-V-SEHVIGKEVDRYT------GRKEASIENVLVPWSTYEFKVIAGNELG  269 (626)
Q Consensus       219 ~~~~~-~w~~-~-~~~~~~~~~~~~~------~~~~~~i~~~l~~~~~y~~~v~a~n~~g  269 (626)
                      .++.. .... . ........ ..+.      ....+.|.+ +...+.+.|.|.|.|..|
T Consensus       259 kng~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~-V~~~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        259 SNGMYYEEDDEDGDGRISVAN-KIYTTDKRRVITSRLNINP-VKEEDATTFTCMAFTIPS  316 (326)
T ss_pred             ECCEECCCcCCCCceeEEEec-CccccccceeeeEEEEECC-cchhcCeeeEEEEEeccC
Confidence            32210 0000 0 00000000 0000      122455655 888889999999999874

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.88  E-value=2.1e-21  Score=169.55  Aligned_cols=152  Identities=25%  Similarity=0.388  Sum_probs=115.6

Q ss_pred             CCCCCceEEEEeeeCCCC-----------CCeeEEEeCCEEc--c-CCCc--------EE-EccCCcEEEccCCCCCCEE
Q psy12061          1 YAGEGGNVTIFCNPEAAP-----------KPKFVWKKDGNII--G-SGGR--------RK-IFENGNLLISPVSRDDSGI   57 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p-----------~p~i~W~~~~~~i--~-~~~~--------~~-~~~~g~L~i~~v~~~d~G~   57 (626)
                      +|.+|++|.|.|.+.+.|           .+.|.|+|++...  . .+.|        .. ...+++|.|.+++.+|+|.
T Consensus        33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~  112 (227)
T PHA02826         33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGI  112 (227)
T ss_pred             EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEE
Confidence            478999999999997754           3499999998652  1 1121        01 1125689999999999999


Q ss_pred             EEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccC---CcceeEEEeeCCEEeccccCCccCC
Q psy12061         58 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE---LLDVAYIWTHNGVRIGNMDLNELET  134 (626)
Q Consensus        58 Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p---~p~~~i~W~~~~~~~~~~~~~~~~~  134 (626)
                      |+|.|.|..+.......|.|...       +.+..+.+|++++|.|.+.+.+   .|..+|+|+|||.++...       
T Consensus       113 Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-------  178 (227)
T PHA02826        113 YICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-------  178 (227)
T ss_pred             EEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-------
Confidence            99999998888877888888432       2345678999999999987542   133477999999998643       


Q ss_pred             CeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061        135 PNIN--IDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus       135 ~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      .++.  ..++.|.|.+++.+|+|.|+|.|....+
T Consensus       179 ~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        179 DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            2333  2456899999999999999999987643

>KOG4194|consensus

Probab=99.86  E-value=4.8e-21  Score=178.80  Aligned_cols=170  Identities=25%  Similarity=0.406  Sum_probs=142.7

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEc-c--CCCcEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNII-G--SGGRRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i-~--~~~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      ..|+.++|.|.++|.|.|+|.|.|+|..- .  ...|..++.+ +...|.+|..+|+|.|+|.|.|..|...+.|.|.|.
T Consensus       625 ~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~  704 (873)
T KOG4194|consen  625 RTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL  704 (873)
T ss_pred             ecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe
Confidence            46999999999999999999999988752 2  2456666654 469999999999999999999999999999999999


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCC-cceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY  157 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y  157 (626)
                      +.|.+.. |-.+..|..|+++.|.|.+.+.|. |.  +.|+|+++++.-..     ...+..++.-|.+.+...+|+|.|
T Consensus       705 e~p~f~~-PL~~~~V~~get~vlqC~a~~~~a~pr--~~W~k~d~pil~t~-----rh~f~d~dQllvv~~~~~~daG~y  776 (873)
T KOG4194|consen  705 ETPSFSI-PLEDQLVVVGETLVLQCLAEGAPADPR--LEWFKEDKPILITE-----RHTFPDGDQLLVVKENLVEDAGIY  776 (873)
T ss_pred             cCCcccc-cccceEEEecceEEEEEecCCCCCCcc--ccccCCCCceEEee-----cccCCCCCeEEEEEehhhhhcceE
Confidence            9987765 567889999999999999999887 54  48999999987542     123334667889999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeCCC
Q psy12061        158 ECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      +|...|..|.....+.+.+...+
T Consensus       777 Tcem~~~~~~~~~~i~l~~~~~~  799 (873)
T KOG4194|consen  777 TCEMSNTLGTERIHICLLVYQKK  799 (873)
T ss_pred             EEEEEeeccceeeEEEEEEeecC
Confidence            99999999988777777666544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.84  E-value=1.4e-19  Score=169.90  Aligned_cols=162  Identities=20%  Similarity=0.336  Sum_probs=121.1

Q ss_pred             CCCCceEEEEee-----eCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee----
Q psy12061          2 AGEGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK----   72 (626)
Q Consensus         2 ~~~G~~~~l~C~-----~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~----   72 (626)
                      +.+|+.+.|.|.     ..++|+|+|.|+++.. + .+.|+....++.|.|.+|+.+|+|.|+|.|.|..|.....    
T Consensus       133 ~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~  210 (326)
T PHA02785        133 VNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRI  210 (326)
T ss_pred             ecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEE
Confidence            458999999997     3567999999998653 3 4567777777899999999999999999999998875432    


Q ss_pred             EEEEEEe--CCceeeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEeccccCCccCCCeeE-----------
Q psy12061         73 GRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMDLNELETPNIN-----------  138 (626)
Q Consensus        73 ~~l~v~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~-----------  138 (626)
                      +.|.|..  .|+.+. .|....+..|++++|.|.+.+.|.+ ...+.|++||..+...+...  ..++.           
T Consensus       211 v~l~V~~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~--~~~~~~~~~~~~~~~~  287 (326)
T PHA02785        211 VKLEVRDRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDG--DGRISVANKIYTTDKR  287 (326)
T ss_pred             EEEEEeccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCC--ceeEEEecCccccccc
Confidence            3455542  233232 3577888899999999999998864 24679999999886432100  01211           


Q ss_pred             -ecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        139 -IDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       139 -~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                       ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       288 ~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        288 RVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             eeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence             124579999999999999999999988543

>KOG0196|consensus

Probab=99.81  E-value=2.9e-19  Score=172.70  Aligned_cols=195  Identities=23%  Similarity=0.302  Sum_probs=148.4

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc------cceEEEE---ecCccceEEEeCC
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE------ETAVYYL---SRTTRNWALIVGL  459 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~------~~~~~~~---~~~~~~~~~i~~L  459 (626)
                      .|+.+|.++... ++.+++.|.|.+|.+.+..  . -..|.|.+++-....      .....+.   ..-......+.+|
T Consensus       330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR--~-Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L  405 (996)
T KOG0196|consen  330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGR--E-DITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDL  405 (996)
T ss_pred             CCCCccceeeee-cccceEEEEecCCcccCCC--c-ceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecc
Confidence            456689898776 8999999999999876643  2 335777764433211      1111121   2234467899999


Q ss_pred             ccCceEEEEEEEeeCCCC-C---CCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEE
Q psy12061        460 QPDTKYYVKVMAYNNAGE-G---PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE  535 (626)
Q Consensus       460 ~p~t~Y~v~V~a~~~~g~-s---~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~  535 (626)
                      .|.+.|.|.|.|.|.... +   +....+.++|....|+ +...++......+++.|+|.  .|+..+|.|..|+|.|+.
T Consensus       406 ~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~--~p~~png~ildYEvky~e  482 (996)
T KOG0196|consen  406 LAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWS--EPDQPNGVILDYEVKYYE  482 (996)
T ss_pred             ccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecC--CCCCCCCcceeEEEEEee
Confidence            999999999999997532 2   2345678889888887 55588888899999999999  788899999999999998


Q ss_pred             eccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      .+.+.   ..........+..++.+|+|++.|-|+|+|.+.+|.|+.|.+ ..|+|.+.
T Consensus       483 k~~~e---~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~-~~fqT~~~  537 (996)
T KOG0196|consen  483 KDEDE---RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGK-HEFQTLPS  537 (996)
T ss_pred             ccccc---cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCc-eeeeecCc
Confidence            76542   223345567788999999999999999999999999999965 56777764

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.79  E-value=5.8e-19  Score=124.74  Aligned_cols=73  Identities=42%  Similarity=0.778  Sum_probs=69.4

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |++++|.|.+.|.|.|+|.|+|++..+..+.|+.+..+|+|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            7899999999999999999999999998888999999999999999999999999999999999999998865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.77  E-value=1.6e-18  Score=124.21  Aligned_cols=74  Identities=32%  Similarity=0.663  Sum_probs=69.4

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ||+++.|.|.+.|.|.|.|.|+|+|..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            79999999999999999999999999998777888888889999999999999999999999999999888865

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>KOG0196|consensus

Probab=99.77  E-value=7.9e-17  Score=156.13  Aligned_cols=218  Identities=22%  Similarity=0.315  Sum_probs=158.7

Q ss_pred             EEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCc--ceee
Q psy12061        261 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--FQSE  338 (626)
Q Consensus       261 ~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~--~~~~  338 (626)
                      .|.+.|.+-+.....+.    .+-..||.+|.++... +..+++.|.|.+| .+.++-....|.|.+++.+...  ...+
T Consensus       309 ~C~C~~gyyRA~~Dp~~----mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P-~d~GGR~Di~y~v~Ck~c~~~~~~C~~C  382 (996)
T KOG0196|consen  309 SCTCENGYYRADSDPPS----MPCTRPPSAPRNLISN-VNGTSLILEWSPP-ADTGGREDITYNVICKKCGGGRGACEPC  382 (996)
T ss_pred             cccccCCcccCCCCCCC----CCCCCCCCccceeeee-cccceEEEEecCC-cccCCCcceEEEEEeeccCCCCCccccC
Confidence            45555555443322222    2334566788888876 7789999999983 4455555677998888765221  1111


Q ss_pred             -----eeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCC-C---CCCccEEEEccCCCCCCCCCceEEEeeecceEEE
Q psy12061        339 -----TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP-G---PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINV  409 (626)
Q Consensus       339 -----~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~-~---~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l  409 (626)
                           -.+....-....+++.+|.|.+.|.|.|.|+|.... +   .....+.++|...+|+ +...++....+.+++.|
T Consensus       383 g~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitl  461 (996)
T KOG0196|consen  383 GDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITL  461 (996)
T ss_pred             CCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEE
Confidence                 111223344667889999999999999999997652 1   2244567788888887 66789999999999999


Q ss_pred             EeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061        410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       410 ~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      +|..|..++    |.|..|+|+|++.+..+...  .......+..++.+|+|++.|.|+|+|.+.+|.|++|..+.|.|.
T Consensus       462 sW~~p~~pn----g~ildYEvky~ek~~~e~~~--~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~  535 (996)
T KOG0196|consen  462 SWSEPDQPN----GVILDYEVKYYEKDEDERSY--STLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL  535 (996)
T ss_pred             ecCCCCCCC----CcceeEEEEEeeccccccce--eEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence            999987654    77999999999887643332  334455566999999999999999999999999999999999998


Q ss_pred             CC
Q psy12061        490 RK  491 (626)
Q Consensus       490 ~~  491 (626)
                      +.
T Consensus       536 ~~  537 (996)
T KOG0196|consen  536 PS  537 (996)
T ss_pred             Cc
Confidence            64

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.74  E-value=1.2e-17  Score=118.30  Aligned_cols=70  Identities=33%  Similarity=0.668  Sum_probs=62.4

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccC--C--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFEN--G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~--g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |+|.|.+.|.|.|.|.|+|||..|.. ++|+.+..+  |  +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            58999999999999999999999974 467777544  3  6999999999999999999999999999999875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.73  E-value=2.4e-17  Score=116.70  Aligned_cols=71  Identities=28%  Similarity=0.554  Sum_probs=66.2

Q ss_pred             eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +++|.|.+.|.|.|.|.|+|+|.++....++.+..++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            58999999999999999999999998878888888889999999999999999999999999999888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=4.4e-17  Score=123.02  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=73.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+.++|.|.+.|.|+|++.|+|||.+|..+.++.+..   .+.|.|.++..+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        12 v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~   91 (98)
T cd05762          12 VRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV   91 (98)
T ss_pred             EECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence            5789999999999999999999999999998777777764   3469999999999999999999999999999999998


Q ss_pred             eCC
Q psy12061         79 HGP   81 (626)
Q Consensus        79 ~~p   81 (626)
                      ..|
T Consensus        92 ~~P   94 (98)
T cd05762          92 DKP   94 (98)
T ss_pred             cCC
Confidence            876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.72  E-value=3.6e-17  Score=116.86  Aligned_cols=73  Identities=41%  Similarity=0.763  Sum_probs=69.1

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |+++.|.|.+.|.|.|++.|+|++..+..+.++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            7899999999999999999999999998888999988899999999999999999999999999999888865

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.71  E-value=6.9e-17  Score=115.89  Aligned_cols=73  Identities=25%  Similarity=0.490  Sum_probs=64.5

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |++++|.|.+.|.|.|+|.|+|||.+|...  .+.....++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            789999999999999999999999998632  2333445568999999999999999999999999999999987

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.70  E-value=1.2e-16  Score=115.08  Aligned_cols=73  Identities=27%  Similarity=0.568  Sum_probs=64.5

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |++++|.|.+.|.|.|+|.|+|||.++...  .......+++|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999998643  2233446788999999999999999999999999999998887

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.70  E-value=5.5e-17  Score=115.21  Aligned_cols=70  Identities=29%  Similarity=0.573  Sum_probs=62.2

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |+|.|.+.|.|.|.|.|+|++.++.. ..|+.+..++    +|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            58999999999999999999999975 4567775543    6999999999999999999999999999998875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.70  E-value=5.4e-17  Score=122.35  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=67.3

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccC--------CcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFEN--------GNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~--------g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +.+|++++|.|.+.| .|+|.|.|+|||.+|..+.++.+...        ++|.|.++..+|+|.|+|.|.|..|.....
T Consensus        15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t   94 (101)
T cd04975          15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT   94 (101)
T ss_pred             EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence            568999999999999 89999999999999986555444332        469999999999999999999999999999


Q ss_pred             EEEEEE
Q psy12061         73 GRLIVL   78 (626)
Q Consensus        73 ~~l~v~   78 (626)
                      +.|.|.
T Consensus        95 ~~L~V~  100 (101)
T cd04975          95 FELYVN  100 (101)
T ss_pred             EEEEEE
Confidence            988874

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.70  E-value=1e-16  Score=118.70  Aligned_cols=75  Identities=29%  Similarity=0.494  Sum_probs=66.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++.++....++.+ .++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        13 ~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          13 ALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            56899999999999999999999999998876555443 4568999999999999999999999999999988877

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.69  E-value=4.3e-16  Score=117.62  Aligned_cols=91  Identities=21%  Similarity=0.383  Sum_probs=78.9

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEE
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      ...|.+..+..|+++.|.|.+.|.|.|.  +.|+|||.++....       ++..    ..+.|.|.++..+|+|.|+|.
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~~~G~p~p~--v~W~kdg~~l~~~~-------~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~   74 (98)
T cd05762           4 IQFPEDMKVRAGESVELFCKVTGTQPIT--CTWMKFRKQIQEGE-------GIKIENTENSSKLTITEGQQEHCGCYTLE   74 (98)
T ss_pred             EECCcCEEEECCCEEEEEEEEcccCCCc--eEEEECCEEecCCC-------cEEEEecCCeeEEEECCCChhhCEEEEEE
Confidence            3467899999999999999999998874  58999999997542       2222    357899999999999999999


Q ss_pred             EEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        161 VKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |.|..|...+++.|.|.++|.+|.
T Consensus        75 a~N~~G~~~~~~~l~V~~~P~pP~   98 (98)
T cd05762          75 VENKLGSRQAQVNLTVVDKPDPPA   98 (98)
T ss_pred             EEcCCCceeEEEEEEEecCCCCCC
Confidence            999999999999999999999883

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.68  E-value=2.7e-16  Score=115.59  Aligned_cols=76  Identities=22%  Similarity=0.409  Sum_probs=66.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+.+.|.|.+.|.|.|.+.|+|++.++.. ++|+.+...   +.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         7 v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894           7 VVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             EEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            57899999999999999999999999999975 356766543   46999999999999999999999999888887765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.68  E-value=3.3e-16  Score=115.78  Aligned_cols=77  Identities=30%  Similarity=0.476  Sum_probs=67.6

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEcc--C-----CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE--N-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~--~-----g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |+.++|.|.+.|.|+|.|.|+|++..|..+ +|+.+..  .     .+|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            899999999999999999999999998643 4665542  1     3699999999999999999999999999999999


Q ss_pred             EEeCC
Q psy12061         77 VLHGP   81 (626)
Q Consensus        77 v~~~p   81 (626)
                      |..+|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            98765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.68  E-value=1.6e-16  Score=111.82  Aligned_cols=68  Identities=34%  Similarity=0.593  Sum_probs=63.2

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      |+|.|.+.|.|.|.|.|+|+|.++....++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999999999988888888888999999999999999999999999998877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>KOG4258|consensus

Probab=99.67  E-value=5.9e-16  Score=150.59  Aligned_cols=287  Identities=17%  Similarity=0.268  Sum_probs=190.3

Q ss_pred             eeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC--------------CCcceeeeeeee---cc-eeeEEEEeC
Q psy12061        293 RIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN--------------DTEFQSETLKEY---GN-VGIAVVRIP  354 (626)
Q Consensus       293 ~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~--------------~~~~~~~~~~~~---~~-~~~~~~~~~  354 (626)
                      ++.....+.+++.++|....+. .--...+|.+.|+...              ...|....+..+   .+ .....+.+.
T Consensus       493 ~~~~~~~~~dsi~lrW~~~~~~-d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~  571 (1025)
T KOG4258|consen  493 QFSSTVTSADSILLRWERYQPP-DMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD  571 (1025)
T ss_pred             eeeeEEeecceeEEEecccCCc-chhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence            4445566778999999985443 2234678999887542              344554444322   11 223357789


Q ss_pred             CCcceeEEEEEEEEec--CCCCC--CCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEE
Q psy12061        355 SEFYYTEYEVKVQAIN--DVGPG--PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRI  430 (626)
Q Consensus       355 ~L~p~~~Y~~~v~a~n--~~g~~--~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v  430 (626)
                      +|+|.|.|-+-|++..  ..+..  ..|....++|..+.|. +|..+-....+++.|.|+|++|..++    |.+..|.|
T Consensus       572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP~~pN----G~lt~Ylv  646 (1025)
T KOG4258|consen  572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPPSQPN----GNLTHYLV  646 (1025)
T ss_pred             cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCCCCCC----CceeEEEE
Confidence            9999999999999983  22221  3477888999999998 88777777777789999999998765    66999999


Q ss_pred             EEEecCCCc---------------------------cc-----------------------------------------e
Q psy12061        431 KYWKEDNPE---------------------------ET-----------------------------------------A  442 (626)
Q Consensus       431 ~~~~~~~~~---------------------------~~-----------------------------------------~  442 (626)
                      .|.+.....                           ..                                         .
T Consensus       647 ~wer~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~  726 (1025)
T KOG4258|consen  647 VWERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNA  726 (1025)
T ss_pred             EEEeccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccce
Confidence            983322100                           00                                         0


Q ss_pred             EEE----------------------------------------------EecCccceEEEeCCccCceEEEEEEEeeCCC
Q psy12061        443 VYY----------------------------------------------LSRTTRNWALIVGLQPDTKYYVKVMAYNNAG  476 (626)
Q Consensus       443 ~~~----------------------------------------------~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g  476 (626)
                      ...                                              ....+...+.+.+|+.++.|.+.+.|+|..+
T Consensus       727 i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~  806 (1025)
T KOG4258|consen  727 IFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHAT  806 (1025)
T ss_pred             eeecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccc
Confidence            000                                              0012223566789999999999999999876


Q ss_pred             C----CCCCccEEEeecCCCC-CCCCceEEEeee-CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec
Q psy12061        477 E----GPESERYLERTYRKAP-QKPPSAVHIKGI-NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV  550 (626)
Q Consensus       477 ~----s~~s~~~~~~t~~~~p-~~~p~~l~~~~~-~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~  550 (626)
                      .    |..+ .+..+|....- ...|..+.-... +.+++.|+|.  +|.+.||.|..|.|.|+................
T Consensus       807 ~~~~cS~a~-~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~--EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~  883 (1025)
T KOG4258|consen  807 PKCGCSHAA-FVFARTMPTMGADDIPGPVTWECHIEMNSVILRWL--EPKEPNGLILNYEVKYRRNGDETHVECVSRMDY  883 (1025)
T ss_pred             cccccchhh-hhhhccccccccccCCCceeEecccCcceEEEecC--CCCCCCccEEEEEEEEeeccCcchhhhhhhhhh
Confidence            5    3322 22334432111 112323333333 7889999999  888999999999999886544322111111222


Q ss_pred             CccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEE
Q psy12061        551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF  589 (626)
Q Consensus       551 ~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~  589 (626)
                      .......+.+|.||. |.++|+|.+-+|.|+|.++++..
T Consensus       884 ~k~~gv~l~~l~~G~-y~~~vratSlaGng~~t~~~~~~  921 (1025)
T KOG4258|consen  884 AKAGGVYLKRLNPGN-YSVRVRATSLAGNGSWTESVIFY  921 (1025)
T ss_pred             hhcCceEEEecCCCc-EEEEEEEEeeccCCCCcCCcceE
Confidence            345567889999986 99999999999999999876633

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.67  E-value=3.5e-16  Score=112.61  Aligned_cols=76  Identities=20%  Similarity=0.393  Sum_probs=65.1

Q ss_pred             ceEEEEeeeCCC--CCCeeEEEeCCEEcc--CC-CcEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          6 GNVTIFCNPEAA--PKPKFVWKKDGNIIG--SG-GRRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         6 ~~~~l~C~~~g~--p~p~i~W~~~~~~i~--~~-~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +++.|.|.+.+.  +++.|.|+|||.+|.  .+ .++.+.    .+|.|.|.+++..|+|.|+|.|.|..+...+++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            579999999774  578999999999996  22 355552    456899999999999999999999999999999999


Q ss_pred             EEeCC
Q psy12061         77 VLHGP   81 (626)
Q Consensus        77 v~~~p   81 (626)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            98776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.67  E-value=2.9e-16  Score=117.85  Aligned_cols=76  Identities=25%  Similarity=0.408  Sum_probs=67.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC-C---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-G---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~-g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|+|.|+|+|.++...+++.+... +   +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        13 v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          13 IMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            57899999999999999999999999999987777666432 2   6999999999999999999999999888877764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.67  E-value=4e-16  Score=111.44  Aligned_cols=70  Identities=30%  Similarity=0.606  Sum_probs=61.6

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|.|.|+|||..|.. ..|+.+..++    +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            58999999999999999999999974 4567665443    5999999999999999999999999999988865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.67  E-value=3.2e-16  Score=117.20  Aligned_cols=76  Identities=24%  Similarity=0.456  Sum_probs=64.2

Q ss_pred             CCCCceEEEEeeeCCCCC-CeeEEEe-CCEEccC-CCcEEEccC----CcEEEccCCCCCCEEEEEEEEcCC-CCceeeE
Q psy12061          2 AGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIGS-GGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVH-GMDESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-p~i~W~~-~~~~i~~-~~~~~~~~~----g~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~   73 (626)
                      +.+|++++|.|.+.|.|. |+|.|++ ||..+.. +.|+.+..+    ++|.|.+++.+|+|.|+|.|.|.. |...+++
T Consensus        12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~   91 (96)
T cd05865          12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV   91 (96)
T ss_pred             ECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence            468999999999999995 7999998 8877765 445555433    479999999999999999999997 8888888


Q ss_pred             EEEE
Q psy12061         74 RLIV   77 (626)
Q Consensus        74 ~l~v   77 (626)
                      .|.|
T Consensus        92 ~l~v   95 (96)
T cd05865          92 NVKI   95 (96)
T ss_pred             EEEE
Confidence            8877

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.67  E-value=4.3e-16  Score=111.30  Aligned_cols=70  Identities=34%  Similarity=0.601  Sum_probs=62.8

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|+|.|+|++.++.  .+.++.+..+|+|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            5899999999999999999999987  5678888888899999999999999999999999985 55677776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.66  E-value=6.6e-16  Score=113.21  Aligned_cols=76  Identities=28%  Similarity=0.497  Sum_probs=64.4

Q ss_pred             ceEEEEeeeCCCCCC--eeEEEeCCEEccCC---CcEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          6 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSG---GRRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         6 ~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~---~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      ++++|.|.+.|.|.|  .|.|+|||.+|..+   .++...    ..++|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            579999999999987  68999999998642   343221    346899999999999999999999999999999999


Q ss_pred             EEeCC
Q psy12061         77 VLHGP   81 (626)
Q Consensus        77 v~~~p   81 (626)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            97765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.66  E-value=5.8e-16  Score=112.23  Aligned_cols=73  Identities=30%  Similarity=0.594  Sum_probs=65.0

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCc--EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~--~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |++++|.|.+.|.|.|+|.|+++|..+....+  .....++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            78999999999999999999999999875432  34455678999999999999999999999999999998887

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.66  E-value=4.2e-16  Score=114.85  Aligned_cols=75  Identities=35%  Similarity=0.651  Sum_probs=68.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.+.|+|+|.++..+.++.+ .++.|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus        11 ~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          11 ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             EcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            56899999999999999999999999999987777665 5778999999999999999999999999888888765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.66  E-value=4.4e-16  Score=106.73  Aligned_cols=65  Identities=28%  Similarity=0.397  Sum_probs=56.8

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|.+.|+|||++|....     ..+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-----~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-----SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-----CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            5799999999999999999999996321     3457999999999999999999999998877777665

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.66  E-value=7.5e-16  Score=115.19  Aligned_cols=76  Identities=34%  Similarity=0.577  Sum_probs=67.9

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |++++|.|.+.|.|.|.|.|+|+|..+        ....|+.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            789999999999999999999988753        235677887788999999999999999999999999999999999


Q ss_pred             EEeC
Q psy12061         77 VLHG   80 (626)
Q Consensus        77 v~~~   80 (626)
                      |...
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            9763

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.65  E-value=4.7e-16  Score=110.07  Aligned_cols=70  Identities=26%  Similarity=0.476  Sum_probs=61.1

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.|.|.+.|.|.|.|.|+|++..+..+.......+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999998886554444455678999999999999999999999999888888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.64  E-value=1.1e-15  Score=114.00  Aligned_cols=75  Identities=32%  Similarity=0.572  Sum_probs=66.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.+.|+|++..+....+.. ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        13 ~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             EeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            5689999999999999999999999988776554443 45788999999999999999999999999999998877

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.64  E-value=8.7e-16  Score=116.11  Aligned_cols=77  Identities=21%  Similarity=0.242  Sum_probs=66.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---------CCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---------NGNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---------~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +..|+.++|.|.+.|.|+|++.|+|||.+|..+.+..+..         ..+|.|.++..+|+|.|+|.|.|..|....+
T Consensus        15 ~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t   94 (101)
T cd05859          15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYT   94 (101)
T ss_pred             EecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence            4578999999999999999999999999998665543321         2469999999999999999999999999999


Q ss_pred             EEEEEE
Q psy12061         73 GRLIVL   78 (626)
Q Consensus        73 ~~l~v~   78 (626)
                      +.|.|.
T Consensus        95 ~~l~V~  100 (101)
T cd05859          95 FALQIQ  100 (101)
T ss_pred             EEEEEE
Confidence            988874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=1.1e-15  Score=107.84  Aligned_cols=69  Identities=32%  Similarity=0.624  Sum_probs=61.7

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|.+.|+|++..+. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP-KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC-CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            5899999999999999999988774 45677777889999999999999999999999999988888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.63  E-value=2e-15  Score=114.54  Aligned_cols=77  Identities=35%  Similarity=0.620  Sum_probs=68.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+.|.|.|.|.|+|+|..+... .++....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        15 ~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             EeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            468999999999999999999999999999765 555554454 59999999999999999999999999999999885

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.63  E-value=1.7e-15  Score=108.77  Aligned_cols=73  Identities=29%  Similarity=0.621  Sum_probs=65.7

Q ss_pred             CceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |+++.|.|.+.|.|.|++.|++ ++..+....+..+..+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 788877777777888899999999999999999999999999887777754

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.63  E-value=1.7e-15  Score=105.76  Aligned_cols=68  Identities=26%  Similarity=0.515  Sum_probs=58.4

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      |++++|.|.+.|.|.|.|.|+|+|.++....++.+ .++.|.|.+++  |+|.|+|.|.|..|.....+.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            78999999999999999999999999876655443 34479999874  8999999999999998887766

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.63  E-value=2.2e-15  Score=111.85  Aligned_cols=76  Identities=25%  Similarity=0.423  Sum_probs=65.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE---EE-ccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~---~~-~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|+.++|.|.+.|.|.|.|.|+|+|.++..+.+.   .. ..+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857           6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            578999999999999999999999999999765443   22 23447999999999999999999999999888888765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.63  E-value=1.6e-15  Score=106.98  Aligned_cols=69  Identities=26%  Similarity=0.420  Sum_probs=60.5

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|.+.|+|||.+|..+.+ ....+++|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            57999999999999999999999987644 4455678999999999999999999999998887777665

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.63  E-value=1.2e-15  Score=106.22  Aligned_cols=68  Identities=25%  Similarity=0.343  Sum_probs=58.5

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|.+.|+|||.+|..+.+  +..+++|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            47999999999999999999999976543  344568999999999999999999999998777766655

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.63  E-value=1.4e-15  Score=110.00  Aligned_cols=73  Identities=29%  Similarity=0.490  Sum_probs=64.4

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |++++|.|.+.|.|.|.|.|+|++..+....|+.+...   +.|.|.+++.+|+|.|+|.|.|..|...+.+.+++
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            78999999999999999999999999877777766543   47999999999999999999999999888776655

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.63  E-value=2.5e-15  Score=107.87  Aligned_cols=71  Identities=30%  Similarity=0.447  Sum_probs=62.9

Q ss_pred             eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      .++|.|.+.|.|.|++.|+|+|..+..+.++.+...   +.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            478999999999999999999999977777776543   36999999999999999999999999888888765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.63  E-value=1.7e-15  Score=111.92  Aligned_cols=76  Identities=28%  Similarity=0.464  Sum_probs=64.0

Q ss_pred             ceEEEEeeeCCCCCC--eeEEEeCCEEccCCC---cEE----EccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          6 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSGG---RRK----IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         6 ~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~~---~~~----~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      ++++|.|.+.|.|.|  ++.|+|||.+|..+.   ++.    ...+++|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            579999999999988  679999999986332   221    22467899999999999999999999999999999999


Q ss_pred             EEeCC
Q psy12061         77 VLHGP   81 (626)
Q Consensus        77 v~~~p   81 (626)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            97765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.62  E-value=4.5e-15  Score=109.89  Aligned_cols=87  Identities=22%  Similarity=0.287  Sum_probs=73.4

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.+.. .+.+..+.+|++++|.|.+.|.|.|.  +.|+|++..+...       .++...++.|.|.+++.+|+|.|+|.
T Consensus         2 p~i~~-~~~~~~~~~G~~v~l~C~~~G~P~P~--v~W~k~~~~~~~~-------~~~~~~~~~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           2 ADINV-KFKDTYALKGQNVTLECFALGNPVPV--IRWRKILEPMPAT-------AEISMSGAVLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             CceEE-ccccEEEeCCCcEEEEEEecccCCCE--EEEEECCcCCCCC-------CEEecCCCEEEECcCChhhCEEEEEE
Confidence            44443 57788999999999999999999885  5899999877542       34555677999999999999999999


Q ss_pred             EEeCCCceEEEEEEEEe
Q psy12061        161 VKSTVGKISTKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~  177 (626)
                      |.|..|..+..+.|.|+
T Consensus        72 A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          72 AENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EEcCCCceEEEEEEEEC
Confidence            99999999999998874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.61  E-value=3.2e-15  Score=108.29  Aligned_cols=74  Identities=26%  Similarity=0.460  Sum_probs=64.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+.++|.|.+.|. .|.|.|+|||.+|..+.++.+. +++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             ecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            5789999999999996 5699999999999877777664 568999999999999999999999998777776654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.61  E-value=4.2e-15  Score=111.67  Aligned_cols=74  Identities=30%  Similarity=0.543  Sum_probs=66.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.|+.+...   ++|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus        15 ~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          15 VSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            67899999999999999999999999999987777777643   479999999999999999999999988777665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.61  E-value=2.9e-15  Score=112.03  Aligned_cols=76  Identities=29%  Similarity=0.448  Sum_probs=64.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEE---ccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~---~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..+....+...   ...++|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus        12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            46899999999999999999999999998865543222   22347999999999999999999999999888888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=4.6e-15  Score=110.57  Aligned_cols=76  Identities=38%  Similarity=0.732  Sum_probs=66.0

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEccC-CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v   77 (626)
                      +.+|+++.|.|.+ .|.|.|.|.|+|+|..+.. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus         8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724           8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            5689999999998 7999999999999999876 56777777889999999999999999999999998654 455543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.61  E-value=3.9e-15  Score=110.04  Aligned_cols=75  Identities=27%  Similarity=0.464  Sum_probs=64.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|. .+.|+| ++.++..+.|+.+..+|   +|.|.++..+|+|.|+|.|.|..|... +...|.
T Consensus        12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~   90 (92)
T cd05866          12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE   90 (92)
T ss_pred             EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            578999999999999998 999998 68888777888887666   799999999999999999999999854 445554


Q ss_pred             E
Q psy12061         77 V   77 (626)
Q Consensus        77 v   77 (626)
                      |
T Consensus        91 ~   91 (92)
T cd05866          91 I   91 (92)
T ss_pred             E
Confidence            4

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.61  E-value=7.2e-15  Score=109.07  Aligned_cols=74  Identities=27%  Similarity=0.427  Sum_probs=62.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v   77 (626)
                      +.+|++++|.|.+.|. .|.|.|+||+.++.. +++.+.. +++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus        15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             cccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            5689999999999999 999999999999865 4555543 358999999999999999999999998665 455655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.60  E-value=4.1e-15  Score=105.39  Aligned_cols=67  Identities=25%  Similarity=0.371  Sum_probs=56.2

Q ss_pred             EEeeeCCCCCCeeEEEeCCEEccCCCcEEE----c----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061         10 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----F----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus        10 l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~----~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |.|.+.|+|.|+|+|+|||.+|..+.+...    .    ..+.|.|.++..+|+|.|+|+|.|..|.+.+.+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            789999999999999999999986654321    1    134799999999999999999999999887776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.60  E-value=7.4e-15  Score=107.65  Aligned_cols=83  Identities=30%  Similarity=0.554  Sum_probs=67.5

Q ss_pred             CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        97 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      ++++|.|.+.+.|.|.++|.|+|||..+........ ..++.  ...+.|.|.+++..|+|.|+|.|.|..|..++++.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGH-YRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCc-EEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence            478999999999999888999999998864321000 01111  145799999999999999999999999999999999


Q ss_pred             EEeCCC
Q psy12061        175 IVEGPP  180 (626)
Q Consensus       175 ~v~~~P  180 (626)
                      .|.++|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            999876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=8.4e-15  Score=105.48  Aligned_cols=80  Identities=30%  Similarity=0.630  Sum_probs=67.6

Q ss_pred             CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061         97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus        97 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      +++.|.|.+...|.+.++|.|+|||+++....    ...++..     ..+.|.|.+++..|+|.|+|.|.|..++.+++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~----~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQK----DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccC----CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence            47899999999888888999999999996321    0123332     45789999999999999999999999999999


Q ss_pred             EEEEEeCCC
Q psy12061        172 TTVIVEGPP  180 (626)
Q Consensus       172 ~~l~v~~~P  180 (626)
                      +.|.|.+||
T Consensus        77 a~L~V~~pP   85 (85)
T cd05853          77 ADLIVRGPP   85 (85)
T ss_pred             EEEEEecCC
Confidence            999999987

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.60  E-value=7.7e-15  Score=110.08  Aligned_cols=70  Identities=34%  Similarity=0.585  Sum_probs=58.8

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc-EEEccCCcEEEccCC-CCCCEEEEEEEEcCCCCceee
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR-RKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~-~~~~~~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      .+|++++|.|.+.|.|.|+|+|+|||.+|....+ .....+|+|.|.++. .+|+|.|+|.|.|..|...+.
T Consensus        17 ~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~   88 (94)
T cd05848          17 SDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSR   88 (94)
T ss_pred             CCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence            3689999999999999999999999999974432 223457889999985 699999999999999987553

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=6.1e-15  Score=111.67  Aligned_cols=76  Identities=42%  Similarity=0.729  Sum_probs=64.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCC--cEEEccCCcEEEccC-----CCCCCEEEEEEEEcC-CCCce-ee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPV-----SRDDSGIYSCTATNV-HGMDE-SK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~--~~~~~~~g~L~i~~v-----~~~d~G~Y~C~a~n~-~g~~~-~~   72 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..|....  ++.++.+|+|.|.++     +.+|+|.|+|.|.|. .|... ..
T Consensus        11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~   90 (95)
T cd05722          11 AVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRT   90 (95)
T ss_pred             EcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEee
Confidence            4689999999999999999999999999997543  467777888998887     589999999999999 99864 45


Q ss_pred             EEEEE
Q psy12061         73 GRLIV   77 (626)
Q Consensus        73 ~~l~v   77 (626)
                      +.|+|
T Consensus        91 ~~l~v   95 (95)
T cd05722          91 ARLTV   95 (95)
T ss_pred             eEEeC
Confidence            66654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.60  E-value=7e-15  Score=109.89  Aligned_cols=76  Identities=28%  Similarity=0.430  Sum_probs=65.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-cCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+. .++   +|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus        13 v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            579999999999999999999999999998876665542 222   6999999999999999999999999888777754

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.59  E-value=9.2e-15  Score=109.01  Aligned_cols=71  Identities=31%  Similarity=0.560  Sum_probs=58.9

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCC-CCCCEEEEEEEEcCCCCcee-eEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDES-KGRL   75 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~-~~~l   75 (626)
                      |+.++|.|.+.|.|.|+|+|+|++..+........+.+|.|.|.++. .+|+|.|+|.|.|..|...+ .+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            45899999999999999999999999864333344567899999985 69999999999999998655 3454

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.59  E-value=6.3e-15  Score=106.13  Aligned_cols=69  Identities=29%  Similarity=0.593  Sum_probs=56.9

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCC-cEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~-~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      ++|.|.+.|.|.|.|.|+|+|.++..+. ++.+.. +++|.|.+++.+|+|.|+|.|.|..|...+.+.+.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~   71 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT   71 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence            5899999999999999999999997543 444433 45899999999999999999999999876544433

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=5.6e-15  Score=106.25  Aligned_cols=70  Identities=30%  Similarity=0.575  Sum_probs=59.4

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEcc---CCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~---~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|+|+|+|+|..+.   ...++.+.. ++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            5799999999999999999986432   334555543 457999999999999999999999999999999887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.59  E-value=6.6e-15  Score=102.47  Aligned_cols=66  Identities=23%  Similarity=0.260  Sum_probs=54.0

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      ++|.|.+.|.|+|++.|+|||.++..+.......+++|.|.+++.+|+|.|+|.|.|.........
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~   66 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL   66 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence            479999999999999999999998765332333456899999999999999999999865544443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.59  E-value=6.8e-15  Score=111.96  Aligned_cols=76  Identities=32%  Similarity=0.565  Sum_probs=63.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc-----CCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG-----SGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~-----~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|  ++..+.     .++|+.+..   .++|.|.+|+.+|+|.|+|.|.|..|....
T Consensus        13 ~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   92 (98)
T cd05870          13 TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQK   92 (98)
T ss_pred             EcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCccee
Confidence            5789999999999999999999999  454443     234666643   247999999999999999999999999888


Q ss_pred             eEEEEE
Q psy12061         72 KGRLIV   77 (626)
Q Consensus        72 ~~~l~v   77 (626)
                      .+.|.|
T Consensus        93 ~~~l~~   98 (98)
T cd05870          93 SMYLDI   98 (98)
T ss_pred             EEEEeC
Confidence            888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.59  E-value=7.7e-15  Score=109.40  Aligned_cols=73  Identities=30%  Similarity=0.518  Sum_probs=58.9

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCC----EEccCCC--cEEEc----------cCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDG----NIIGSGG--RRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~----~~i~~~~--~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      |++++|.|.+.|.|.|+|.|+|++    ..+..++  ...++          ..+.|.|.+|+.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999963    3333221  11111          1246999999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy12061         69 DESKGRLIV   77 (626)
Q Consensus        69 ~~~~~~l~v   77 (626)
                      ..+++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            999999987

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.59  E-value=1.4e-14  Score=107.16  Aligned_cols=80  Identities=20%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--------cCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--------DGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      |+.++|.|.+.|.|.+  .+.|+|++..+....      .++.+        ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 g~~~~l~C~~~g~p~~--~i~W~k~~~~i~~~~------~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~   72 (88)
T cd05735           1 GQKKEMSCTAHGEKPI--IVRWEKEDRIINPEM------SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE   72 (88)
T ss_pred             CCeEEEEEEEECCCCC--EEEEeeCCEECCCCC------CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence            7899999999999865  569999998885432      22221        1257999999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCC
Q psy12061        168 ISTKTTVIVEGPPGLP  183 (626)
Q Consensus       168 ~~~~~~l~v~~~P~~p  183 (626)
                      .+..+.|.|..+|.+|
T Consensus        73 ~~~~~~L~V~~~P~~P   88 (88)
T cd05735          73 DRGIIQLTVQEPPDPP   88 (88)
T ss_pred             ceEEEEEEEeCCCCCC
Confidence            9999999999999887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.58  E-value=1.8e-14  Score=111.29  Aligned_cols=79  Identities=25%  Similarity=0.443  Sum_probs=66.5

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEc--c-----CCcEEEccCC-CCCCEEEEEEEEcCCCCceeeE
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIF--E-----NGNLLISPVS-RDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~--~-----~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      ..|++++|.|.+.|.|.|.+.|+|||..|.. +.|+.+.  .     .++|.|.++. .+|.|.|+|.|.|..|.....+
T Consensus        21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            3578999999999999999999999999974 3455432  1     2469999997 5999999999999999999999


Q ss_pred             EEEEEeCC
Q psy12061         74 RLIVLHGP   81 (626)
Q Consensus        74 ~l~v~~~p   81 (626)
                      .|.|...|
T Consensus       101 ~L~~~~~p  108 (109)
T cd05773         101 QLVSTSRP  108 (109)
T ss_pred             EEEecCCC
Confidence            99997665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.58  E-value=1.1e-14  Score=108.71  Aligned_cols=73  Identities=27%  Similarity=0.560  Sum_probs=59.9

Q ss_pred             CceEEEEeeeCCCCCCeeEEEe----CCEEccCCCc--EEEccC----------CcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKK----DGNIIGSGGR--RKIFEN----------GNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~----~~~~i~~~~~--~~~~~~----------g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      |++++|.|.+.|.|.|.|.|+|    +|..+..+++  ..+...          ++|.|.+|+.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            7899999999999999999999    4555543322  222111          36999999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy12061         69 DESKGRLIV   77 (626)
Q Consensus        69 ~~~~~~l~v   77 (626)
                      ....+.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999987

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.58  E-value=6.9e-15  Score=110.88  Aligned_cols=76  Identities=36%  Similarity=0.640  Sum_probs=69.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|++.|+++|..|..+.++.+...+   +|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        12 v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   12 VKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            578999999999999999999999999999988888876543   6999999999999999999999999998888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.57  E-value=1.3e-14  Score=104.77  Aligned_cols=67  Identities=21%  Similarity=0.330  Sum_probs=56.8

Q ss_pred             EEeeeCCCCCCeeEEEeCCEEccCCCcEEEc----------cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061         10 IFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus        10 l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |.|.+.|.|.|+|+|+|||++|..+.++.+.          ..+.|.|.+++.+|+|.|+|.|.|..|...+...+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            7899999999999999999999876544321          134699999999999999999999999988877664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=9.2e-15  Score=104.32  Aligned_cols=70  Identities=30%  Similarity=0.442  Sum_probs=59.0

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++|.|.+.|.|.|.+.|+|++..+..+.......++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            5799999999999999999998876443222233568999999999999999999999999888888776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.57  E-value=1.2e-14  Score=110.45  Aligned_cols=74  Identities=27%  Similarity=0.471  Sum_probs=62.9

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccCC-----CcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-----~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      .|++++|.|.+.|.|.|+|.|+|++..+...     +++.+..+   +.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus        16 ~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   95 (97)
T cd05869          16 LEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL   95 (97)
T ss_pred             cCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence            4799999999999999999999999887532     34444333   379999999999999999999999999988888


Q ss_pred             EE
Q psy12061         76 IV   77 (626)
Q Consensus        76 ~v   77 (626)
                      .|
T Consensus        96 ~v   97 (97)
T cd05869          96 EV   97 (97)
T ss_pred             EC
Confidence            65

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.57  E-value=8.2e-15  Score=109.27  Aligned_cols=76  Identities=26%  Similarity=0.364  Sum_probs=63.6

Q ss_pred             CCCCCceEEEEeeeCC-----CCCCeeEEEeCCEEccC----CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          1 YAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~i~~----~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      ++.+|+.+.|.|.+.|     .|.|+|.|+|+|.++..    ..|+.. .+++|.|.++..+|+|.|.|.|.|..|....
T Consensus        10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~   88 (94)
T cd05756          10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYCMKV   88 (94)
T ss_pred             EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence            4679999999999999     68999999999976532    233322 4678999999999999999999999999888


Q ss_pred             eEEEEE
Q psy12061         72 KGRLIV   77 (626)
Q Consensus        72 ~~~l~v   77 (626)
                      .+.|.|
T Consensus        89 ~~~L~v   94 (94)
T cd05756          89 SISLTV   94 (94)
T ss_pred             EEEEEC
Confidence            888765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.57  E-value=3.1e-14  Score=106.89  Aligned_cols=71  Identities=32%  Similarity=0.536  Sum_probs=58.6

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCC-CCCCEEEEEEEEcCCCCcee-eEEE
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDES-KGRL   75 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~-~~~l   75 (626)
                      +|++++|.|.+.|+|.|+|.|+|||..|...  .++.+ .+|+|.|.++. .+|+|.|+|.|.|..|...+ .+.|
T Consensus        18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          18 PEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            4578999999999999999999999999633  34444 57889998866 59999999999999998765 3444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.55  E-value=2.5e-14  Score=109.06  Aligned_cols=76  Identities=30%  Similarity=0.517  Sum_probs=63.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-----CcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-----~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+...     +++.+..+   +.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        13 ~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~   92 (96)
T cd05732          13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM   92 (96)
T ss_pred             EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence            468999999999999999999999998776532     34444332   3699999999999999999999999988887


Q ss_pred             EEEE
Q psy12061         74 RLIV   77 (626)
Q Consensus        74 ~l~v   77 (626)
                      .|.|
T Consensus        93 ~l~v   96 (96)
T cd05732          93 YLEV   96 (96)
T ss_pred             EEeC
Confidence            7754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.55  E-value=7.3e-14  Score=104.11  Aligned_cols=88  Identities=25%  Similarity=0.454  Sum_probs=73.1

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.++...|.+..+.+|++++|.|.+.|.|.|.  +.|+|++..+...       ......++.|.|.+++.+|+|.|+|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~   71 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQ--IKWRKVDGSMPSS-------AEISMSGAVLKIPNIQFEDEGTYECE   71 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCE--EEEEECCCcCCCc-------cEEEEeCCEEEECCCCcccCEEEEEE
Confidence            34455567888999999999999999999874  5899988766433       22335778999999999999999999


Q ss_pred             EEeCCCceEEEEEEEEe
Q psy12061        161 VKSTVGKISTKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~  177 (626)
                      |.|..|..+..+.|.|.
T Consensus        72 a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          72 AENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             EEECCCcEEEEEEEEEC
Confidence            99999999999988873

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.54  E-value=5.5e-14  Score=103.88  Aligned_cols=84  Identities=31%  Similarity=0.575  Sum_probs=67.4

Q ss_pred             CcEEEEEEecccCCcceeEEEeeCCEEeccccCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061         97 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus        97 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      ++++|.|.+.+.|.|.+++.|+|+|..+....... ..........+.|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            47899999999999888889999999986432100 00011122567899999999999999999999999999999999


Q ss_pred             EeCCC
Q psy12061        176 VEGPP  180 (626)
Q Consensus       176 v~~~P  180 (626)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=5e-14  Score=100.80  Aligned_cols=74  Identities=23%  Similarity=0.441  Sum_probs=62.8

Q ss_pred             cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      +|+++.|.|.+.|.|.|.  |.|+|+|..+....      ......++.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         1 eG~~v~l~C~~~g~P~p~--i~W~k~g~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPV--IAWTKGGSQLSVDR------RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCE--EEEEECCEECCCCC------CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            589999999999999885  58999999886532      2223466799999999999999999999999999998888


Q ss_pred             EE
Q psy12061        175 IV  176 (626)
Q Consensus       175 ~v  176 (626)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            64

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.53  E-value=7.7e-14  Score=102.80  Aligned_cols=82  Identities=27%  Similarity=0.497  Sum_probs=72.1

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ..|.+..+..|++++|.|.+.|.|.|  .+.|+|+|..+...       .++...++.|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~k~g~~~~~~-------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   74 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRP--AYRWLKNGQPLASE-------NRIEVEAGDLRITKLSLSDSGMYQCVAENKH   74 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCC--EEEEEECCEECCCC-------CeEEEeCCEEEEeeCCHHHCEEEEEEEECCC
Confidence            35788999999999999999999987  46999999988643       4566678899999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy12061        166 GKISTKTTVIV  176 (626)
Q Consensus       166 g~~~~~~~l~v  176 (626)
                      |...+++.|.|
T Consensus        75 G~~~~~~~l~V   85 (85)
T cd05728          75 GTIYASAELAV   85 (85)
T ss_pred             CeEEEEEEEEC
Confidence            99998888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.53  E-value=3.9e-14  Score=102.96  Aligned_cols=69  Identities=38%  Similarity=0.619  Sum_probs=56.2

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLI   76 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~   76 (626)
                      |+|.|.+.|.|.|.|.|+|++...        ..++|+.+..+++|.|.++..+|+|.|+|.|.|..|... ..+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            589999999999999999964321        134677777789999999999999999999999999863 345554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.53  E-value=6.6e-14  Score=108.17  Aligned_cols=76  Identities=29%  Similarity=0.586  Sum_probs=60.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-----CCcEEEccCCcEEEcc-----CCCCCCEEEEEEEEcCCCC-ce
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----GGRRKIFENGNLLISP-----VSRDDSGIYSCTATNVHGM-DE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-----~~~~~~~~~g~L~i~~-----v~~~d~G~Y~C~a~n~~g~-~~   70 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..     ..+..++.+|.+.+..     ++.+|+|.|+|.|.|..|. .+
T Consensus        13 v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s   92 (100)
T cd07693          13 VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS   92 (100)
T ss_pred             EcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence            56899999999999999999999999999865     2344455566543332     3689999999999999999 55


Q ss_pred             eeEEEEE
Q psy12061         71 SKGRLIV   77 (626)
Q Consensus        71 ~~~~l~v   77 (626)
                      ..+.|.|
T Consensus        93 ~~~~l~v   99 (100)
T cd07693          93 RNASLEV   99 (100)
T ss_pred             ceEEEEe
Confidence            6677766

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.53  E-value=3.8e-14  Score=104.65  Aligned_cols=75  Identities=23%  Similarity=0.409  Sum_probs=62.4

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ..|++++|.|.+.|.|.|.+.|+|++..+......... ...+|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus         7 ~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             cCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            46999999999999999999999999988654333222 2347999999999999999999999998777776654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.53  E-value=9.2e-14  Score=100.30  Aligned_cols=71  Identities=35%  Similarity=0.644  Sum_probs=62.1

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.|.|.+.|.|.|.|.|+|++..|..+  .++.+..++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            479999999999999999999998754  355555555 59999999999999999999999999999999884

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=6.5e-14  Score=102.93  Aligned_cols=73  Identities=29%  Similarity=0.581  Sum_probs=59.8

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCE-----EccCC---CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGN-----IIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~-----~i~~~---~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |++++|.|.+.|.|.|.|.|+|++.     .+..+   .++.+...++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999732     12111   233444557899999999999999999999999988888876


Q ss_pred             E
Q psy12061         77 V   77 (626)
Q Consensus        77 v   77 (626)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.52  E-value=6.3e-14  Score=106.63  Aligned_cols=75  Identities=31%  Similarity=0.416  Sum_probs=64.0

Q ss_pred             CCCCCceEEEEeeeCCCCCC-eeEEEeCCEEccC--CCcEEEccC-------CcEEEccCCC-CCCEEEEEEEEcCCCCc
Q psy12061          1 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGS--GGRRKIFEN-------GNLLISPVSR-DDSGIYSCTATNVHGMD   69 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~--~~~~~~~~~-------g~L~i~~v~~-~d~G~Y~C~a~n~~g~~   69 (626)
                      ++.+|+++.|.|.+.|.|.| .|.|++++..|..  +.|+.+..+       ++|.|.+++. +|.|.|.|.|.|..|..
T Consensus        12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~   91 (98)
T cd05758          12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG   91 (98)
T ss_pred             EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence            36789999999999999999 6999999999874  357777654       2699999999 55999999999999998


Q ss_pred             eeeEEE
Q psy12061         70 ESKGRL   75 (626)
Q Consensus        70 ~~~~~l   75 (626)
                      ...+.|
T Consensus        92 ~~~~~L   97 (98)
T cd05758          92 TAIISL   97 (98)
T ss_pred             cEEEEe
Confidence            877665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.52  E-value=7.2e-14  Score=98.73  Aligned_cols=72  Identities=25%  Similarity=0.460  Sum_probs=62.1

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      |+++.|.|.+.+.|.|  +|.|+|++..+...       .++.+ .++.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~~~l~C~~~g~P~p--~v~W~k~~~~l~~~-------~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   71 (73)
T cd05852           1 GGRVIIECKPKAAPKP--KFSWSKGTELLVNN-------SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVL   71 (73)
T ss_pred             CCeEEEEEecceeCCC--EEEEEeCCEecccC-------CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence            7899999999999987  55899999877543       45544 66899999999999999999999999999999988


Q ss_pred             EE
Q psy12061        175 IV  176 (626)
Q Consensus       175 ~v  176 (626)
                      .|
T Consensus        72 ~~   73 (73)
T cd05852          72 SV   73 (73)
T ss_pred             EC
Confidence            64

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.51  E-value=1.7e-13  Score=103.36  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             CCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeE-------ecCCeEEEeecCCCCCEeEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNIN-------IDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      ...+.+.+|++++|.|.+.+ .|+|  .+.|+|||.++.....     ..+.       ...+.|.|..+..+|+|.|+|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p--~v~W~Kdg~~i~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc   82 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPP--HINWTYDNRTLTNKLT-----EIVTSENESEYRYVSELKLVRLKESEAGTYTF   82 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCC--ccEEEeCCeeCCCCcc-----eeEEEeccCcceEEEEEEEeecCHhhCeeEEE
Confidence            35678999999999999999 7876  4589999999974321     1111       124789999999999999999


Q ss_pred             EEEeCCCceEEEEEEEEe
Q psy12061        160 VVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       160 ~a~n~~g~~~~~~~l~v~  177 (626)
                      .|.|..|..+..+.|.|.
T Consensus        83 ~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          83 LASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEECCCccEEEEEEEEEE
Confidence            999999999999999875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.51  E-value=6.3e-14  Score=100.75  Aligned_cols=65  Identities=20%  Similarity=0.483  Sum_probs=54.5

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      |.+|+++.|.|.+.|.|.| +|.|+|||.+|..  +.. ...+.|.|..+  .|+|.|+|.|+|..|...+
T Consensus        10 v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          10 VTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             EcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            6799999999999999999 7999999999864  111 13457999887  4889999999999998665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.51  E-value=9.3e-14  Score=99.59  Aligned_cols=65  Identities=29%  Similarity=0.564  Sum_probs=53.6

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEc-cCCcEEEccCCC----CCCEEEEEEEEcCCCCceee
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIF-ENGNLLISPVSR----DDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~-~~g~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +.|.|.+.|+|.|.|.|+|||.++.  .+.++.+. .+|+|.|.++..    +|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4799999999999999999999763  45566653 567899998752    57999999999999986554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.51  E-value=1.7e-13  Score=102.80  Aligned_cols=86  Identities=28%  Similarity=0.412  Sum_probs=69.7

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec---CCeEEEeecCCCCCEeEEEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID---GGLLEITNASFADAGEYECV  160 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      +...|..+.+.+|++++|.|.+.|.|.|.  +.|+|+|.++....     ..++...   ...|.|.+++.+|+|.|+|.
T Consensus         4 ~~~lp~~v~v~~G~~v~L~C~v~G~P~p~--v~W~k~g~~l~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   76 (92)
T cd05737           4 VGGLPDVVTIMEGKTLNLTCTVFGDPDPE--VSWLKNDQALALSD-----HYNVKVEQGKYASLTIKGVSSEDSGKYGIV   76 (92)
T ss_pred             eccCCceEEEeCCCcEEEEEEEEecCCCe--EEEEECCEECccCC-----CEEEEEcCCCEEEEEEccCChhhCEEEEEE
Confidence            44567888999999999999999999875  58999999986542     1122222   23799999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy12061        161 VKSTVGKISTKTTVIV  176 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v  176 (626)
                      |.|..|..+..+.|.|
T Consensus        77 a~N~~G~~~~~~~v~v   92 (92)
T cd05737          77 VKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEECCCcceEEEEEeC
Confidence            9999999888887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.50  E-value=9.7e-14  Score=103.73  Aligned_cols=74  Identities=26%  Similarity=0.488  Sum_probs=59.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGM-DESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l   75 (626)
                      +.+|+++.|.|.+.|.|+ .+.|++ ++..+....++.+..++    +|+|.+++.+|+|.|+|.|.|..|. ...++.|
T Consensus        12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l   90 (92)
T cd04977          12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL   90 (92)
T ss_pred             ECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEE
Confidence            568999999999999974 999998 77777665666655443    6999999999999999999999765 4455555


Q ss_pred             E
Q psy12061         76 I   76 (626)
Q Consensus        76 ~   76 (626)
                      .
T Consensus        91 ~   91 (92)
T cd04977          91 K   91 (92)
T ss_pred             E
Confidence            4

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.50  E-value=1.2e-13  Score=99.09  Aligned_cols=65  Identities=28%  Similarity=0.628  Sum_probs=53.0

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEc-cCCcEEEccCCCC----CCEEEEEEEEcCCCCceee
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLISPVSRD----DSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~-~~g~L~i~~v~~~----d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +.|.|.+.|+|.|+|.|+|||.++..  +.++.+. .+|+|.|..++.+    |+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            57999999999999999999998743  3344443 4688999988753    7899999999999986553

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.50  E-value=2.5e-13  Score=99.79  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .+.+..|+++.|.|.+.|.|.|.  +.|+|++.++....      .++..    ..+.|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~--v~W~k~~~~i~~~~------~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   75 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPT--VTWSRGDKAFTETE------GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPV   75 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCe--EEEEECCEECccCC------CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCC
Confidence            46789999999999999999885  48999999987532      23333    24689999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy12061        166 GKISTKTTVIV  176 (626)
Q Consensus       166 g~~~~~~~l~v  176 (626)
                      |..+..+.|.|
T Consensus        76 G~~~~~~~l~V   86 (86)
T cd05894          76 GEDHASLFVKV   86 (86)
T ss_pred             CcEEEEEEEEC
Confidence            99988888764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.49  E-value=1.2e-13  Score=99.54  Aligned_cols=64  Identities=30%  Similarity=0.620  Sum_probs=53.5

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEc-cCCcEEEccCCC----CCCEEEEEEEEcCCCCcee
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLISPVSR----DDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~-~~g~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~   71 (626)
                      ++|.|.+.|+|.|+|+|+|||.++..  +.++.+. .+|+|.|.+++.    +|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            57999999999999999999999853  3455543 468899999864    7999999999999998654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.49  E-value=1.9e-13  Score=98.83  Aligned_cols=63  Identities=27%  Similarity=0.524  Sum_probs=54.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      +.+|+++.|.|.+.+ |.|+|.|+|||.+|..+ .|+. +.++.|.|.+++.+|+|.|+|.|.+..
T Consensus         8 v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~-~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL-LYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE-EECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            578999999999865 67899999999999866 4544 467789999999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=3.3e-13  Score=97.13  Aligned_cols=75  Identities=23%  Similarity=0.436  Sum_probs=64.2

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      |++++|.|.+.|.|.|  +++|+|+|.++....    ...+.....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~G~P~p--~i~W~k~g~~i~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTP--NITWSINGAPIEGTD----PDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCC--eEEEEECCEECCCCC----CCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            7899999999999987  459999999886532    1235566778999999999999999999999999999998887


Q ss_pred             E
Q psy12061        176 V  176 (626)
Q Consensus       176 v  176 (626)
                      |
T Consensus        75 V   75 (76)
T cd05867          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.48  E-value=1.9e-13  Score=96.85  Aligned_cols=70  Identities=23%  Similarity=0.367  Sum_probs=57.8

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--c-CC--eEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--D-GG--LLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~-~~--~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ++|.|.+.|.|.|.+  .|+|++..+....      .++.+  . .+  .|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 v~l~C~v~G~P~P~i--~W~k~~~~i~~~~------~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05892           1 VKLECQISAIPPPKI--FWKRNNEMVQYNT------DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR   72 (75)
T ss_pred             CEEEEEEEecCCCeE--EEEECCEECcCCC------CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence            579999999999854  8999999986432      34332  2 22  7999999999999999999999999999998


Q ss_pred             EEE
Q psy12061        174 VIV  176 (626)
Q Consensus       174 l~v  176 (626)
                      |.|
T Consensus        73 L~V   75 (75)
T cd05892          73 LDV   75 (75)
T ss_pred             EeC
Confidence            875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.48  E-value=3e-13  Score=101.07  Aligned_cols=87  Identities=18%  Similarity=0.281  Sum_probs=69.2

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ..+|++..+.+|+++.|.|.+.|.|.|.  +.|+++|..+......   ..........|.|.++...|.|.|+|.|.|.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~--v~W~~~g~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPK--VEWIIAGLIVIQTRTD---TLETTVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCe--EEEEECCEEccCCccE---EEEecCCEEEEEEecCCcccCEEEEEEEECC
Confidence            3467788899999999999999999875  5899999987643210   0011123458999999999999999999999


Q ss_pred             CCceEEEEEEEE
Q psy12061        165 VGKISTKTTVIV  176 (626)
Q Consensus       165 ~g~~~~~~~l~v  176 (626)
                      .|..+..+.|.|
T Consensus        79 ~G~~~~~~~L~v   90 (90)
T cd04972          79 VGQANVSVQVTV   90 (90)
T ss_pred             CCceeEEEEEeC
Confidence            999999888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.47  E-value=4.9e-13  Score=100.42  Aligned_cols=85  Identities=21%  Similarity=0.379  Sum_probs=69.7

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAG  155 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g  155 (626)
                      +|.++ ..|.+..+.+|+++.|.|.+.+.|.|.  +.|+|+|..+...       .+..+    ..+.|.|.+++.+|+|
T Consensus         3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p~--v~W~k~g~~l~~~-------~~~~~~~~~~~~~L~i~~~~~~D~G   72 (92)
T cd05747           3 PATIL-TKPRSLTVSEGESARFSCDVDGEPAPT--VTWMREGQIIVSS-------QRHQITSTEYKSTFEISKVQMSDEG   72 (92)
T ss_pred             CCccc-ccCccEEEeCCCcEEEEEEEeecCCCE--EEEEECCEECCCC-------CcEEEEEcCCeeEEEECCCCcccCE
Confidence            45555 457899999999999999999999875  5899999887643       22222    2468999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEE
Q psy12061        156 EYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l  174 (626)
                      .|+|.|.|..|..+..+.|
T Consensus        73 ~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          73 NYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             eEEEEEEcCCCCEeEEEEe
Confidence            9999999999998887766

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.46  E-value=3.3e-13  Score=92.54  Aligned_cols=66  Identities=17%  Similarity=0.283  Sum_probs=56.5

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      ++|.|.+.|.|.|.  +.|+|||.++...           ...+.|.|.++..+|+|.|+|.|.|..|..+.+..+.+.
T Consensus         1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~-----------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPE--FQWYKDGKLISGK-----------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCE--EEEEECCEECccc-----------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999999999985  5899999999632           145699999999999999999999999988888777663

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.46  E-value=7.1e-13  Score=102.38  Aligned_cols=95  Identities=19%  Similarity=0.383  Sum_probs=71.1

Q ss_pred             eCCceeeeCCCceEEe---cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--------ecCCeEEEe
Q psy12061         79 HGPSYYEQLPPKITIA---AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--------IDGGLLEIT  147 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~---~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~  147 (626)
                      .+|.+...+.-...+.   .|.+++|.|.+.|.|.|  .+.|+|||..+...+      .++.        ...+.|.|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p--~i~W~k~g~~l~~~~------~r~~~~~~~~~~~~~s~L~I~   74 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV--QFRWAKNGVPLDLGN------PRYEETTEHTGTVHTSILTII   74 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCC--EEEEEECCEECCCCC------CeEEEEeeccCccceeEEEEC
Confidence            3555544322223332   45799999999999876  569999999986432      1221        124689999


Q ss_pred             ecC-CCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        148 NAS-FADAGEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       148 ~~~-~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      ++. .+|.|.|+|.|.|..|..+..+.|.+..+|.
T Consensus        75 ~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          75 NVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             cCCccCCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence            997 5899999999999999999999999998874

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.46  E-value=3.6e-13  Score=100.92  Aligned_cols=67  Identities=34%  Similarity=0.678  Sum_probs=56.1

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEccCCcEEEccCCC-CCCEEEEEEEEcCCCCcee
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~~~g~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~   71 (626)
                      .|++++|.|.+.|+|.|+|+|+|++..+..  ..++. ..++.|.|.++.. +|+|.|+|.|.|..|...+
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            457899999999999999999999999843  33443 4567899998874 9999999999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.46  E-value=2.8e-13  Score=96.18  Aligned_cols=70  Identities=21%  Similarity=0.366  Sum_probs=57.8

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec-C--C--eEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID-G--G--LLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~--~--~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ++|.|.+.|.|.|.  +.|+|++..+....      .++... .  +  .|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         1 v~l~C~v~G~P~P~--v~W~k~~~~l~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05893           1 VRLECRVSGVPHPQ--IFWKKENESLTHNT------DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR   72 (75)
T ss_pred             CEEEEEEeEecCCE--EEEEECCEECCCCC------CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            57999999999985  58999999986432      344432 1  1  6999999999999999999999999999998


Q ss_pred             EEE
Q psy12061        174 VIV  176 (626)
Q Consensus       174 l~v  176 (626)
                      |.|
T Consensus        73 L~V   75 (75)
T cd05893          73 LDV   75 (75)
T ss_pred             EeC
Confidence            875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.46  E-value=2.2e-13  Score=98.42  Aligned_cols=67  Identities=28%  Similarity=0.565  Sum_probs=55.4

Q ss_pred             EEEEeeeCC-CCCCeeEEEeCCEEccCCCcEE---Ec---cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061          8 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK---IF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR   74 (626)
Q Consensus         8 ~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~---~~---~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   74 (626)
                      ++|.|.+.| .|.|++.|+|+|.++....+..   +.   ..+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 9999999999999997554332   21   1347999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=5.6e-13  Score=96.49  Aligned_cols=79  Identities=30%  Similarity=0.462  Sum_probs=65.8

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      |.+..+.+|++++|.|.+.+.+ +  .+.|+|||.++...       .++.+.++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~~-~--~v~W~k~g~~l~~~-------~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDDV-Q--SINWTKDGVQLGEN-------NRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCCC-c--eEEEeeCCcCCCCC-------ceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence            4677889999999999999963 3  56999999988653       455566779999999999999999999999998


Q ss_pred             eEEEEEEEE
Q psy12061        168 ISTKTTVIV  176 (626)
Q Consensus       168 ~~~~~~l~v  176 (626)
                      ....+.|.|
T Consensus        71 ~~~~~~v~V   79 (79)
T cd04973          71 DTTYFSVNV   79 (79)
T ss_pred             ccEEEEEeC
Confidence            777766653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.45  E-value=8.8e-13  Score=98.68  Aligned_cols=83  Identities=25%  Similarity=0.399  Sum_probs=66.2

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .|.+..+..|++++|.|.+.|.|.+ +++.|++ |+..+....      .++..     ..+.|.|.+++.+|+|.|+|.
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~-p~i~W~~~~g~~l~~~~------~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKD-KDISWFSPNGEKLTPNQ------QRISVVRNDDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCC-CEEEEECCCCcCccccC------CeEEEEeCCCCceEEEEeccChhhCEEEEEE
Confidence            4667789999999999999999853 2568998 787665421      23322     136899999999999999999


Q ss_pred             EEeCC-CceEEEEEEEE
Q psy12061        161 VKSTV-GKISTKTTVIV  176 (626)
Q Consensus       161 a~n~~-g~~~~~~~l~v  176 (626)
                      |.|.. |..++++.|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            99996 88999998876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.45  E-value=7.2e-13  Score=95.00  Aligned_cols=75  Identities=21%  Similarity=0.342  Sum_probs=62.4

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      |++++|.|.+.|.|.|.  |.|+|||.++.....    .......++.|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus         1 g~~~~l~C~a~G~P~P~--i~W~k~g~~i~~~~~----~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPS--ISWLTNGVPIEIAPT----DPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCe--EEEEECCEEccccCC----CceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            78899999999999885  589999999864310    112234567899999999999999999999999999999988


Q ss_pred             E
Q psy12061        176 V  176 (626)
Q Consensus       176 v  176 (626)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            6

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.45  E-value=8e-13  Score=93.49  Aligned_cols=70  Identities=19%  Similarity=0.433  Sum_probs=58.8

Q ss_pred             cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061         98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus        98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +++|.|.+.|.|.|.  +.|+|+|..+....       ++. ...+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~--v~W~k~g~~~~~~~-------~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPT--VKWVKNGDMVIPSD-------YFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCE--EEEEECCeECCCCC-------CEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            479999999999885  58999999886532       222 35668999999999999999999999999999988864

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.45  E-value=9.1e-13  Score=97.82  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=65.7

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ..+.+..+.+|++++|.|.+.+. .|  .+.|+|++..+....      ..+...++.|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~~~~v~~g~~v~l~C~a~g~-~p--~i~W~kng~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T cd05740           8 NSVGNQPPEDNQPVTLTCEAEGQ-AT--YIWWVNNGSLLVPPR------LQLSNDNRTLTFNNVTRSDTGHYQCEASNEV   78 (91)
T ss_pred             cccCccccccCCcEEEEEEeCCC-CC--EEEEEECCEECCCCC------EEEeCCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            34667899999999999999999 66  458999999876432      1222355789999999999999999999999


Q ss_pred             Cce-EEEEEEEE
Q psy12061        166 GKI-STKTTVIV  176 (626)
Q Consensus       166 g~~-~~~~~l~v  176 (626)
                      |.. +..+.|.|
T Consensus        79 G~~~S~~~~L~V   90 (91)
T cd05740          79 SNMTSDPYILNV   90 (91)
T ss_pred             CCEEeeeEEEEe
Confidence            975 44666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.44  E-value=1.7e-12  Score=106.12  Aligned_cols=119  Identities=17%  Similarity=0.211  Sum_probs=83.6

Q ss_pred             cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE
Q psy12061         44 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR  123 (626)
Q Consensus        44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~  123 (626)
                      +|.|.+++.+|+|.|.|.+.+..|.....+.|.|..+|.+... +.......|+.++|.|.+.+..++.++|.|+++|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            5899999999999999999998888888899999888876443 445555589999999999997655578899999865


Q ss_pred             ecc-----ccCCccCCCeeEecC------CeEEEeecCCCCCEeEEEEEEeCC
Q psy12061        124 IGN-----MDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus       124 ~~~-----~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ...     .+...  .......+      +.|.|..-...+...|+|.+.+..
T Consensus        81 ~~~~~~~~~~~~~--~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          81 DSPPPVSLSNVSF--SSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CccceeccCCeEe--cceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            221     11000  00011122      345555444445669999997654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.43  E-value=1.8e-12  Score=98.24  Aligned_cols=83  Identities=20%  Similarity=0.342  Sum_probs=68.7

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      +.+..+..|++++|.|.+.|.|.|.  +.|+++|..+....      .+..  ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEPT--MTWTKDGEPIESGE------EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA   81 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCCE--EEEEECCEECcCCC------CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence            3456889999999999999998875  58999999886541      2222  245679999999999999999999999


Q ss_pred             CceEEEEEEEEeC
Q psy12061        166 GKISTKTTVIVEG  178 (626)
Q Consensus       166 g~~~~~~~l~v~~  178 (626)
                      |..+..+.|.|..
T Consensus        82 G~~~~~~~L~V~~   94 (95)
T cd05730          82 GEQEAEIHLKVFA   94 (95)
T ss_pred             CeEEEEEEEEEEe
Confidence            9999999988753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.43  E-value=4.2e-13  Score=98.89  Aligned_cols=73  Identities=22%  Similarity=0.418  Sum_probs=59.1

Q ss_pred             CceEEEEeeeCCC--CCCeeEEEeCCEEccCCC----cEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061          5 GGNVTIFCNPEAA--PKPKFVWKKDGNIIGSGG----RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR   74 (626)
Q Consensus         5 G~~~~l~C~~~g~--p~p~i~W~~~~~~i~~~~----~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   74 (626)
                      |++++|.|.+.|.  |.|.+.|++++..+....    +....    ..++|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            8999999999999  888999999887654221    11111    1236999999999999999999999999988888


Q ss_pred             EEE
Q psy12061         75 LIV   77 (626)
Q Consensus        75 l~v   77 (626)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=6e-13  Score=98.42  Aligned_cols=73  Identities=23%  Similarity=0.378  Sum_probs=60.1

Q ss_pred             CCCCceEEEEeeeCC-----CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|++++|.|...+     +|.|.|.|+||+.+|....+... .+++|.|.++..+|+|.|+|.|.|..+.....+..
T Consensus         7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757           7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            568999999999744     36789999999999986655443 77889999999999999999999998886554433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.42  E-value=3.8e-13  Score=98.60  Aligned_cols=68  Identities=32%  Similarity=0.572  Sum_probs=56.7

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEc--cCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNII--GSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i--~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      |.+|+.+.|.|.. .|.|.|.|.|+|++.++  ..+.|..+.. +|+|.|.+|+.+|+|.|.|.|.|.....
T Consensus        15 v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          15 VKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            5689999999976 77899999999998865  3345555554 7999999999999999999999986543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.42  E-value=2.1e-12  Score=97.72  Aligned_cols=86  Identities=10%  Similarity=0.019  Sum_probs=67.6

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc-CCCe--eEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL-ETPN--INIDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      ...+..|+.++|.|.+.|.|.|.  +.|+|||.++........ ....  .....+.|.|.++..+|+|.|+|.|.|..|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~--v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQ--IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCc--eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            57888999999999999999984  589999999875421000 0000  011246899999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy12061        167 KISTKTTVIVE  177 (626)
Q Consensus       167 ~~~~~~~l~v~  177 (626)
                      ..+.++.|.|.
T Consensus        90 ~~~~t~~l~V~  100 (101)
T cd05859          90 VKSYTFALQIQ  100 (101)
T ss_pred             eEEEEEEEEEE
Confidence            99999988875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.42  E-value=1.6e-12  Score=90.76  Aligned_cols=68  Identities=24%  Similarity=0.462  Sum_probs=56.6

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      |++++|.|.+.|.|.|.  |.|+|++.++...       .+.......|+|.++  .|+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~a~G~P~P~--v~W~k~g~~l~~~-------~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPY--VKWMKGGEELTKE-------DEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCE--EEEEECCEECCCc-------cceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            78899999999999985  5899999987543       234445668999997  48999999999999998888776

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.41  E-value=2.8e-12  Score=95.67  Aligned_cols=85  Identities=27%  Similarity=0.570  Sum_probs=64.4

Q ss_pred             CceeeeCCCceEEecC---CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC-CCCCEe
Q psy12061         81 PSYYEQLPPKITIAAH---RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS-FADAGE  156 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g---~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~  156 (626)
                      |.+.. .|.+..+.++   ..+.|.|.+.|.|.|  +|.|+|++..+....      .++...++.|.|.++. .+|+|.
T Consensus         2 P~f~~-~P~~~~~~~~~~~~~v~l~C~a~G~P~P--~i~W~k~~~~i~~~~------~~~~~~~g~L~I~~~~~~~D~G~   72 (93)
T cd05849           2 PVFEE-QPIDTIYPEESTEGKVSVNCRARANPFP--IYKWRKNNLDIDLTN------DRYSMVGGNLVINNPDKYKDAGR   72 (93)
T ss_pred             CEEEE-CCCCEEecCCccCCeEEEeCcCccCCCC--EEEEEECCEEccCCC------CeEEEECCEEEECcCCcCCCCEE
Confidence            44444 4666655544   489999999999987  559999999885322      4555678899999985 689999


Q ss_pred             EEEEEEeCCCceEE-EEEE
Q psy12061        157 YECVVKSTVGKIST-KTTV  174 (626)
Q Consensus       157 Y~C~a~n~~g~~~~-~~~l  174 (626)
                      |+|.|.|..|...+ .+.|
T Consensus        73 Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          73 YVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEEEEeCcceEEEccEEE
Confidence            99999999998743 4444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.41  E-value=2.9e-12  Score=97.46  Aligned_cols=91  Identities=20%  Similarity=0.392  Sum_probs=68.0

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccccCCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMDLNELETPNINI----DGGLLEITNASFAD  153 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d  153 (626)
                      +|.+..  +.+..+.+|++++|.|.+.|.|.|.  +.|+|  ++..+....  .....++..    ..+.|.|.+++.+|
T Consensus         2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p~--i~W~k~~~g~~~~~~~--~~~~~r~~v~~~~~~~~L~I~~v~~~D   75 (98)
T cd05870           2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIPE--ITWKRASDGHTFSEGD--KSPDGRIEVKGQHGESSLHIKDVKLSD   75 (98)
T ss_pred             CCEEEe--eccEEEcCCCcEEEEEecccCCCCe--EEEEECCCCceeccCC--cCcCceEEEeecCCeeEEEEeeCCcCC
Confidence            344432  5688999999999999999999875  58998  454443211  011134443    23589999999999


Q ss_pred             CEeEEEEEEeCCCceEEEEEEEE
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +|.|+|.|.|..|..+.++.|.|
T Consensus        76 ~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          76 SGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CEEEEEEEeccCCcceeEEEEeC
Confidence            99999999999999988888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.41  E-value=2e-12  Score=93.59  Aligned_cols=75  Identities=27%  Similarity=0.431  Sum_probs=63.6

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      |++++|.|.+.|.|.|.  |.|+++|..+.....    ..+.....+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~--i~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPT--ITWRLNGVPIEELPP----DPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCE--EEEEECCEECCCCCC----cceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            78999999999999885  589999998875421    123445678999999999999999999999999999998887


Q ss_pred             E
Q psy12061        176 V  176 (626)
Q Consensus       176 v  176 (626)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.40  E-value=1.8e-12  Score=92.57  Aligned_cols=72  Identities=22%  Similarity=0.420  Sum_probs=61.0

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      |+++.|.|.+.+.|.|  ++.|+|++..+...       .++. ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~~~g~P~p--~v~W~k~~~~~~~~-------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKPKAAPKP--TISWSKGTELLTNS-------SRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL   71 (73)
T ss_pred             CCeEEEEEeeeEcCCC--EEEEEECCEEcccC-------CCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence            7899999999999887  56999999988643       2333 355789999999999999999999999999999888


Q ss_pred             EE
Q psy12061        175 IV  176 (626)
Q Consensus       175 ~v  176 (626)
                      .|
T Consensus        72 ~V   73 (73)
T cd04969          72 SV   73 (73)
T ss_pred             EC
Confidence            65

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.40  E-value=1.3e-12  Score=92.48  Aligned_cols=71  Identities=24%  Similarity=0.327  Sum_probs=59.0

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +.|.|.+.|.|.|.  +.|+|++..+....      .......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus         1 ~~L~C~~~G~P~P~--v~W~k~~~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPE--VHWDRIDGPLSPNR------TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCe--EEEEECCcCCCCCc------eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            47999999999985  58999998775431      2333467899999999999999999999999999999888763

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.40  E-value=1.8e-12  Score=92.52  Aligned_cols=70  Identities=24%  Similarity=0.333  Sum_probs=57.1

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cC---CeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DG---GLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ++|.|.+.|.|.|.  +.|+|++..+....      .++.+  ..   ..|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 v~L~C~v~G~P~P~--v~W~k~~~~i~~~~------~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   72 (75)
T cd05744           1 VRLECRVSAIPPPQ--IFWKKNNEMLTYNT------DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR   72 (75)
T ss_pred             CEEEEEEeecCCCe--EEEEECCEECCCCC------CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence            57999999999985  58999999986431      23332  11   26999999999999999999999999999988


Q ss_pred             EEE
Q psy12061        174 VIV  176 (626)
Q Consensus       174 l~v  176 (626)
                      |.|
T Consensus        73 l~v   75 (75)
T cd05744          73 LDV   75 (75)
T ss_pred             EeC
Confidence            864

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.39  E-value=2.1e-12  Score=91.06  Aligned_cols=70  Identities=21%  Similarity=0.333  Sum_probs=59.4

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +.|.|.+.|.|.|.  +.|+|||.++...       .+.....+.|.|.+++.+|+|.|+|.|.|..|..+....+.+.
T Consensus         1 ~~l~c~v~g~P~p~--v~W~k~g~~l~~~-------~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPE--IQWYKNGKLISEK-------NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCE--EEEEECCEECCCC-------CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            47999999999885  5899999998754       3455677899999999999999999999999988777777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.39  E-value=2.9e-12  Score=96.50  Aligned_cols=88  Identities=23%  Similarity=0.448  Sum_probs=71.9

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYE  158 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~  158 (626)
                      |.+.. .+.++.+.+|++++|.|.+.+.|.|  ++.|+++|..+.....     ..+..  ....|.|.++..+|+|.|+
T Consensus         1 P~~~~-~~~~~~v~~G~~~~l~c~~~~~p~~--~v~W~~~~~~l~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~   72 (90)
T PF07679_consen    1 PVFTK-KPKDVTVKEGESVTLECEVSGNPPP--TVTWYKNGRPLTSSQR-----YQIESDGGSSSLTIKNVTREDAGTYT   72 (90)
T ss_dssp             EEEEE-ESSEEEEETTSEEEEEEEEEESSSS--EEEEEETTEEEESSSS-----EEEEEETTEEEEEESSESGGGSEEEE
T ss_pred             CEEEE-ecCCEEEeCCCEEEEEEEEEeCCCC--cccccccccceeeeee-----eeeecccceeEEccCCCChhhCEEEE
Confidence            33444 4689999999999999999999776  5589999999987421     12221  4568999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEE
Q psy12061        159 CVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v  176 (626)
                      |.|.|..|..+..+.|.|
T Consensus        73 C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   73 CVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEC
Confidence            999999999999988875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.39  E-value=3.9e-12  Score=96.53  Aligned_cols=91  Identities=20%  Similarity=0.362  Sum_probs=67.6

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEe
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGE  156 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~  156 (626)
                      |.+.. ++....+..|++++|.|.+.|.|.|.  +.|++++..+......  ...++..    ..+.|.|.+++.+|+|.
T Consensus         3 p~i~~-~~~~~~~~~g~~v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~--~~~~~~v~~~~~~~~L~I~~v~~~D~G~   77 (97)
T cd05869           3 PKITY-VENQTAMELEEQITLTCEASGDPIPS--ITWRTSTRNISSEEKT--LDGHIVVRSHARVSSLTLKYIQYTDAGE   77 (97)
T ss_pred             ceEEE-ccCceEEEcCCCEEEEEEeeEeCCCE--EEEEECCccccCCccc--cCccEEEEcCccEEEEEEecCccCcCEE
Confidence            44433 35555566789999999999999874  5899998877543211  1123322    22589999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEE
Q psy12061        157 YECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      |+|.|.|..|..+.++.|.|
T Consensus        78 Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          78 YLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCCCCeeEEEEEEC
Confidence            99999999999999888864

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.39  E-value=1.3e-12  Score=96.53  Aligned_cols=71  Identities=31%  Similarity=0.560  Sum_probs=60.2

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|++++|.|.+.+ .|.|.|.|+|++..+...   ....++.|.|.+++.+|+|.|.|.|.|..|...+.+.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            578999999999975 688899999998766432   22346789999999999999999999999998888776

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.39  E-value=2.9e-12  Score=92.11  Aligned_cols=73  Identities=15%  Similarity=0.370  Sum_probs=59.3

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ..|+++.+.+|+++.|.|.+.|.|.|. +|.|+|||.++...         .....+.|.|.++  .|+|.|+|.|.|..
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~-~I~W~k~g~~l~~~---------~~~~~s~L~i~~~--~d~g~Y~C~A~N~~   70 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPV-EILWWQGGSPLGDP---------PAPSPSVLNVPGL--NETSKFSCEAHNAK   70 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCe-EEEEEECCEECCCC---------CCCCCCEEEEccc--cCCeEEEEEEEecc
Confidence            357889999999999999999999882 35899999988641         1124568999887  57899999999999


Q ss_pred             CceEE
Q psy12061        166 GKIST  170 (626)
Q Consensus       166 g~~~~  170 (626)
                      |...+
T Consensus        71 G~~~s   75 (81)
T cd05749          71 GVTTS   75 (81)
T ss_pred             CcEEe
Confidence            97644

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.38  E-value=4.8e-12  Score=94.93  Aligned_cols=82  Identities=26%  Similarity=0.571  Sum_probs=63.4

Q ss_pred             CceeeeCCCceEEe---cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC-CCCCEe
Q psy12061         81 PSYYEQLPPKITIA---AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS-FADAGE  156 (626)
Q Consensus        81 p~~~~~~~~~~~v~---~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~  156 (626)
                      |.++.. |.++.+.   .|++++|.|.+.|.|.|  +|+|+|||..+....     ..++...++.|.|.++. ..|+|.
T Consensus         2 P~f~~~-p~~~~~~~~~~g~~v~l~C~~~G~P~P--~i~W~k~g~~l~~~~-----~~~~~~~~g~L~i~~~~~~~D~G~   73 (94)
T cd05848           2 PVFVQE-PDDAIFPTDSDEKKVILNCEARGNPVP--TYRWLRNGTEIDTES-----DYRYSLIDGNLIISNPSEVKDSGR   73 (94)
T ss_pred             CeeEEC-CCcEEccCCCCCCEEEEEEEeeecCCC--EEEEEECCeECccCC-----CceEEeeCCeEEEccCCccCcCEE
Confidence            455554 5555554   47899999999999988  458999999986432     13555667899999985 699999


Q ss_pred             EEEEEEeCCCceEE
Q psy12061        157 YECVVKSTVGKIST  170 (626)
Q Consensus       157 Y~C~a~n~~g~~~~  170 (626)
                      |+|.|.|..|...+
T Consensus        74 Y~C~A~N~~G~~~S   87 (94)
T cd05848          74 YQCLATNSIGSILS   87 (94)
T ss_pred             EEEEEEcCCCeEEe
Confidence            99999999998743

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.38  E-value=1.8e-12  Score=97.15  Aligned_cols=75  Identities=24%  Similarity=0.414  Sum_probs=58.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--------CEEccCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--------GNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--------~~~i~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.+.|.|.|.|++.        +.....++|+.+..    +.+|.|.+++.+|+|.|.|.+.+. ...
T Consensus         9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~-~~~   87 (95)
T cd07701           9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM-PVK   87 (95)
T ss_pred             EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee-cCc
Confidence            57999999999999999999999863        22233456776642    247999999999999999999985 444


Q ss_pred             eeeEEEEE
Q psy12061         70 ESKGRLIV   77 (626)
Q Consensus        70 ~~~~~l~v   77 (626)
                      ...+.|.|
T Consensus        88 ~~~~~l~v   95 (95)
T cd07701          88 TSKAYLTV   95 (95)
T ss_pred             cEEEEEEC
Confidence            66777764

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.38  E-value=4.8e-12  Score=94.58  Aligned_cols=84  Identities=26%  Similarity=0.407  Sum_probs=67.4

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC---CeEEEeecCCCCCEeEEEEEE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      ..|..+.+.+|+++.|.|.+.+.|.|.  +.|+|++..+.....     .......   ..|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~--i~W~k~~~~~~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   78 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPE--VIWFKNDQDIELSEH-----YSVKLEQGKYASLTIKGVTSEDSGKYSINVK   78 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCe--EEEEECCEECCCCCC-----EEEEEcCCCEEEEEECCCChhhCEEEEEEEE
Confidence            357788999999999999999998774  599999988764321     1111111   379999999999999999999


Q ss_pred             eCCCceEEEEEEEE
Q psy12061        163 STVGKISTKTTVIV  176 (626)
Q Consensus       163 n~~g~~~~~~~l~v  176 (626)
                      |..|..+..+.|.|
T Consensus        79 N~~G~~~~~~~v~~   92 (92)
T cd05891          79 NKYGGETVDVTVSV   92 (92)
T ss_pred             eCCCceeeEEEEEC
Confidence            99999988888764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.38  E-value=6.7e-12  Score=92.83  Aligned_cols=80  Identities=21%  Similarity=0.374  Sum_probs=63.3

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe-cC---CeEEEeecCCCCCEeEEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DG---GLLEITNASFADAGEYECVV  161 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~-~~---~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      +|.+..+..|+++.|.|.+.|.|.   .+.|++ ++..+...       .++.. .+   ..|.|.++..+|+|.|+|.|
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~---~v~W~k~~g~~~~~~-------~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A   75 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIVSS-------QRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   75 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC---eEEEEeCCCeEecCC-------CCEEEEeCCCeeEEEEecCChHHCEEEEEEE
Confidence            567888999999999999999885   458998 57676543       23333 22   38999999999999999999


Q ss_pred             EeCCCce-EEEEEEEE
Q psy12061        162 KSTVGKI-STKTTVIV  176 (626)
Q Consensus       162 ~n~~g~~-~~~~~l~v  176 (626)
                      .|..|.. .+++.|.+
T Consensus        76 ~N~~G~~~~~~i~l~~   91 (92)
T cd05866          76 TDAKGQTQEATVVLEI   91 (92)
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999986 56666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.38  E-value=3.8e-12  Score=94.38  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=64.9

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST  170 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~  170 (626)
                      ..+.+|+++.|.|.+.|.|.|  .+.|+|+|..+......  ...+.......|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p--~i~W~k~g~~l~~~~~~--~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTP--TMRWLKNGKEFKQEHRI--GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCC--EEEEEECCEECCCCCce--eeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            457899999999999999876  56999999998754210  00112224557999999999999999999999999999


Q ss_pred             EEEEEE
Q psy12061        171 KTTVIV  176 (626)
Q Consensus       171 ~~~l~v  176 (626)
                      .+.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            888764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.37  E-value=3.9e-12  Score=94.73  Aligned_cols=76  Identities=26%  Similarity=0.474  Sum_probs=63.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.+.|.|.+.|+|++..+..+.+.....    ...|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus         6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729           6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            5689999999999999999999999999987554443322    125999999999999999999999998877777654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.37  E-value=1.1e-11  Score=93.14  Aligned_cols=86  Identities=23%  Similarity=0.490  Sum_probs=65.4

Q ss_pred             CceeeeCCCceEEecC---CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC-CCCCEe
Q psy12061         81 PSYYEQLPPKITIAAH---RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS-FADAGE  156 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g---~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~  156 (626)
                      |.+. ..|.+..+.+|   ++++|.|.+.|.|.|  +|+|++||..+....     ..++...++.|.|.++. ..|+|.
T Consensus         2 P~f~-~~P~~~~~~~~~~g~~v~l~C~a~g~P~p--~i~W~~~g~~l~~~~-----~~~~~~~~g~L~I~~~~~~~D~G~   73 (94)
T cd05850           2 PVFE-EQPSSLLFPEGSPEEKVTLGCRARASPPA--TYRWKMNGTEIKFAP-----ESRYTLVAGNLVINNPQKARDAGS   73 (94)
T ss_pred             CeeE-ECCCCEEecCCCCCCeEEEEeEceeCCCC--EEEEEECCEECccCC-----CceEEEECCeEEEccCCccCcCEE
Confidence            4444 35777766555   689999999999987  569999999986432     14555667899998865 599999


Q ss_pred             EEEEEEeCCCceEE-EEEE
Q psy12061        157 YECVVKSTVGKIST-KTTV  174 (626)
Q Consensus       157 Y~C~a~n~~g~~~~-~~~l  174 (626)
                      |+|.|.|..|...+ .+.|
T Consensus        74 Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          74 YQCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEEEcCcCcEEEEEEEE
Confidence            99999999998744 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.37  E-value=9.1e-13  Score=96.40  Aligned_cols=66  Identities=30%  Similarity=0.462  Sum_probs=58.8

Q ss_pred             CCCCceEEEEee-eCCCCCCeeEEEeCCEE-ccCCCcEEEccCCcEEEccCCCCCCE-EEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCN-PEAAPKPKFVWKKDGNI-IGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~-~~g~p~p~i~W~~~~~~-i~~~~~~~~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g   67 (626)
                      |.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.+..+|+|.|.+|+.+|+| .|.|.|.|...
T Consensus        15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             EecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            678999999997 69999999999987755 55678999988999999999999999 89999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.37  E-value=7.3e-12  Score=96.65  Aligned_cols=92  Identities=21%  Similarity=0.388  Sum_probs=66.3

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEee-----cCCCCCE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN-----ASFADAG  155 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-----~~~~d~g  155 (626)
                      |.+. ..|.+..+.+|++++|.|.+.|.|.|  .+.|+|+|..+...... ....+....++.+.+..     +..+|+|
T Consensus         2 P~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~D~G   77 (100)
T cd07693           2 PRIV-EHPSDLIVSKGDPATLNCKAEGRPTP--TIQWLKNGQPLETDKDD-PRSHRIVLPSGSLFFLRVVHGRKGRSDEG   77 (100)
T ss_pred             CeEE-ecCceeEEcCCCeEEEEeeCCcCCCC--EEEEEECCEECccccCC-CCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence            4444 45788999999999999999999987  45899999998752110 01122333444443332     3689999


Q ss_pred             eEEEEEEeCCCc-eEEEEEEEE
Q psy12061        156 EYECVVKSTVGK-ISTKTTVIV  176 (626)
Q Consensus       156 ~Y~C~a~n~~g~-~~~~~~l~v  176 (626)
                      .|+|.|.|..|. .+..+.|.|
T Consensus        78 ~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          78 VYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEEccccceecceEEEEe
Confidence            999999999998 677777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.37  E-value=5.6e-12  Score=95.99  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=66.3

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      +.+..+.+|++++|.|.+.+.|.|.  +.|++++..+.....  ....++..    ..+.|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIPE--ITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASN   83 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCCc--EEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEe
Confidence            5578899999999999999998875  589999866543211  01123322    235899999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy12061        164 TVGKISTKTTVIV  176 (626)
Q Consensus       164 ~~g~~~~~~~l~v  176 (626)
                      ..|..+.++.|.|
T Consensus        84 ~~G~~~~s~~l~v   96 (96)
T cd05732          84 RIGGDQQSMYLEV   96 (96)
T ss_pred             CCCCcEEEEEEeC
Confidence            9999988888764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.36  E-value=2e-12  Score=92.44  Aligned_cols=56  Identities=25%  Similarity=0.531  Sum_probs=48.3

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      +.+|++++|.|.+.|.|.+ .+.|+|||..|..       .+++|.|.++ .+|+|.|+|.|.|.
T Consensus        12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            4689999999999998864 7999999998732       3457999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.36  E-value=3.5e-12  Score=95.16  Aligned_cols=75  Identities=28%  Similarity=0.429  Sum_probs=59.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC----CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC-CceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG-MDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~----~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~   76 (626)
                      +.+|+++.|.|.+.+ |.+.+.|+|++..+...    .++... .+.|.|.+++.+|+|.|+|.|.|..+ .......|.
T Consensus         8 v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~   85 (89)
T cd04979           8 VVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLN   85 (89)
T ss_pred             EECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEE
Confidence            578999999999987 88899999999887654    344443 45699999999999999999997644 344556666


Q ss_pred             EE
Q psy12061         77 VL   78 (626)
Q Consensus        77 v~   78 (626)
                      |.
T Consensus        86 V~   87 (89)
T cd04979          86 VL   87 (89)
T ss_pred             Ee
Confidence            64

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.35  E-value=4.1e-12  Score=94.59  Aligned_cols=74  Identities=20%  Similarity=0.381  Sum_probs=57.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      |.+|++|.|.|.+.|.|.|.|.|+|++..+        ..+.|+.+..    +.+|.|.+|+.+|+|.|+|.+... -..
T Consensus         9 v~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~   87 (95)
T cd05882           9 VAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVR   87 (95)
T ss_pred             EecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccc
Confidence            578999999999999999999999977543        2345665542    247999999999999999999873 334


Q ss_pred             eeeEEEE
Q psy12061         70 ESKGRLI   76 (626)
Q Consensus        70 ~~~~~l~   76 (626)
                      .+.+.|.
T Consensus        88 ~~~~~~~   94 (95)
T cd05882          88 TAKATVT   94 (95)
T ss_pred             cEEEEEE
Confidence            4445544

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.35  E-value=3.3e-12  Score=89.81  Aligned_cols=67  Identities=31%  Similarity=0.631  Sum_probs=56.6

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      +.|.|.+.|.|.|.  +.|+|+|..+...       .++.+ ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~--i~W~k~g~~~~~~-------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPT--ITWNKDGVQVTES-------GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCE--EEEEECCEECCCC-------CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999885  5899999988653       23333 46799999999999999999999999999888776

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.35  E-value=4.1e-12  Score=91.57  Aligned_cols=67  Identities=30%  Similarity=0.539  Sum_probs=53.3

Q ss_pred             EEEEeeeCC-CCCCeeEEEeCCEEccCC----CcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061          8 VTIFCNPEA-APKPKFVWKKDGNIIGSG----GRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR   74 (626)
Q Consensus         8 ~~l~C~~~g-~p~p~i~W~~~~~~i~~~----~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   74 (626)
                      +.|.|.+.+ .|.+.+.|+|||.+|...    .++.+..   .++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 588899999999998632    2333322   246999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=4.5e-12  Score=90.60  Aligned_cols=74  Identities=24%  Similarity=0.413  Sum_probs=58.7

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ...|+...+.+|++++|.|.+.+.|.+. .+.|+|||..+..             .++.|.|.++ .+|+|.|+|.|.|.
T Consensus         4 ~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l~~-------------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           4 SLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLLET-------------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             EeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEeec-------------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            3467888999999999999999987643 4699999988732             3568999999 99999999999875


Q ss_pred             CCceEEEEEEE
Q psy12061        165 VGKISTKTTVI  175 (626)
Q Consensus       165 ~g~~~~~~~l~  175 (626)
                        ..+..+.|.
T Consensus        69 --~~S~~v~l~   77 (78)
T cd05752          69 --SLSDPVHLE   77 (78)
T ss_pred             --cCCCCEEEe
Confidence              444444443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.35  E-value=6.8e-12  Score=91.81  Aligned_cols=74  Identities=26%  Similarity=0.409  Sum_probs=56.3

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCC----cEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCC--CceeeEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----RRKIFE---NGNLLISPVSRDDSGIYSCTATNVHG--MDESKGRL   75 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~----~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~l   75 (626)
                      |++++|.|.+.|.|.|.+.|++++..+....    +..+..   ..+|.|.+++.+|+|.|.|.|.|..+  ....+..|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            8999999999999999999999776432111    111111   23699999999999999999999876  45666677


Q ss_pred             EEE
Q psy12061         76 IVL   78 (626)
Q Consensus        76 ~v~   78 (626)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.35  E-value=1.2e-11  Score=91.98  Aligned_cols=81  Identities=25%  Similarity=0.430  Sum_probs=64.7

Q ss_pred             CCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         87 LPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      .|.+..+.+|+++.|.|.+ .+.|.|  ++.|+|+|..+....      .+.. ..++.|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p--~i~W~k~g~~~~~~~------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEP--TVSWRKDGQPLNLDN------ERVRIVDDGNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCC--EEEEEECCEECCCCC------CCEEEccCCEEEEeECCcccCEEEEEEEEec
Confidence            4678889999999999998 678776  558999999887532      2222 34679999999999999999999999


Q ss_pred             CCce-EEEEEEE
Q psy12061        165 VGKI-STKTTVI  175 (626)
Q Consensus       165 ~g~~-~~~~~l~  175 (626)
                      .|.. +..+.|.
T Consensus        74 ~G~~~s~~~~l~   85 (86)
T cd05724          74 VGERESAAARLS   85 (86)
T ss_pred             cCceeeeeEEEE
Confidence            9976 4455554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.35  E-value=5.2e-12  Score=87.95  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=55.8

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +.|.|.+.|.|.|.  +.|+|||.++...       .++ ..+..|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus         1 ~~~~c~v~G~P~P~--v~W~k~g~~l~~~-------~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPE--VKWYKNGQLIVLN-------HTF-KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCE--EEEEECCEECCCC-------CEE-ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            47999999999985  4899999999653       222 23568999999999999999999999998777666654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.34  E-value=1e-11  Score=92.78  Aligned_cols=83  Identities=23%  Similarity=0.340  Sum_probs=64.3

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEecccc-CCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-LNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      |++++|.|.+.+.|.|.  +.|+|+|..+.... .......++.. .++.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus         1 G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   78 (90)
T cd05726           1 GRTVTFQCEATGNPQPA--IFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAY   78 (90)
T ss_pred             CCEEEEEEECCccCCCE--EEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence            78999999999999875  58999987542110 00011245544 3678999999999999999999999999999999


Q ss_pred             EEEeCCC
Q psy12061        174 VIVEGPP  180 (626)
Q Consensus       174 l~v~~~P  180 (626)
                      |.|.+..
T Consensus        79 l~V~~~~   85 (90)
T cd05726          79 LEVTDVI   85 (90)
T ss_pred             EEEeecc
Confidence            9998644

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.34  E-value=1.3e-11  Score=93.40  Aligned_cols=85  Identities=27%  Similarity=0.428  Sum_probs=65.4

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec-----CCCCCEeEEEE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA-----SFADAGEYECV  160 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~C~  160 (626)
                      ..|.+..+.+|+++.|.|.+.+.|.|  .+.|+|||..+....-    .......++.|.|.++     ...|.|.|+|.
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p--~i~W~k~g~~l~~~~~----~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~   77 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPP--KIEWKKDGVLLNLVSD----ERRQQLPNGSLLITSVVHSKHNKPDEGFYQCV   77 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCC--EEEEEECCeECccccC----cceEEccCCeEEEeeeeccCCCCCcCEEEEEE
Confidence            35678888999999999999999876  5599999999875320    0122335667888777     58999999999


Q ss_pred             EEeC-CCce-EEEEEEEE
Q psy12061        161 VKST-VGKI-STKTTVIV  176 (626)
Q Consensus       161 a~n~-~g~~-~~~~~l~v  176 (626)
                      |.|. .|.. +..+.|.|
T Consensus        78 a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          78 AQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EECCccCcEEEeeeEEeC
Confidence            9999 9987 55666653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.34  E-value=6.3e-12  Score=93.20  Aligned_cols=75  Identities=28%  Similarity=0.470  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEeeeCCCCCC-eeEEEeCCEEccC--CCcEEEccC----C---cEEEccCCCCC-CEEEEEEEEcCCCCc
Q psy12061          1 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGS--GGRRKIFEN----G---NLLISPVSRDD-SGIYSCTATNVHGMD   69 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~--~~~~~~~~~----g---~L~i~~v~~~d-~G~Y~C~a~n~~g~~   69 (626)
                      ++.+|++++|.|.+.+.|+| .|.|..++..|..  +.|+.+...    |   .|.|.++...| .|.|.|.|.|.+|..
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d   91 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG   91 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence            47899999999999888887 7899998888764  468877542    2   59999998766 799999999999998


Q ss_pred             eeeEEE
Q psy12061         70 ESKGRL   75 (626)
Q Consensus        70 ~~~~~l   75 (626)
                      ...+.|
T Consensus        92 ~~~i~L   97 (98)
T cd05898          92 TAIIQL   97 (98)
T ss_pred             eEEEEe
Confidence            877665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.34  E-value=6.7e-12  Score=93.50  Aligned_cols=84  Identities=33%  Similarity=0.603  Sum_probs=69.8

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.++++...+.+++.|+|++  +...++.+.+|.|+|+..+...  .............+.+.+|.|++.|.|+|+|.+
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~--~~~~~~~~~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~   77 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKP--PSSGNGPITGYRVEYRSVNSTS--DWQEVTVPGNETSYTITGLQPGTTYEFRVRAVN   77 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEE--SSSTSSSESEEEEEEEETTSSS--EEEEEEEETTSSEEEEESCCTTSEEEEEEEEEE
T ss_pred             cCcCeEEEECCCCEEEEEEEC--CCCCCCCeeEEEEEEEecccce--eeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEe
Confidence            688999999999999999995  4377899999999987766543  133444556667999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12061        576 NGGDGRMS  583 (626)
Q Consensus       576 ~~G~g~~s  583 (626)
                      ..|.|++|
T Consensus        78 ~~g~g~~S   85 (85)
T PF00041_consen   78 SDGEGPPS   85 (85)
T ss_dssp             TTEEEEEE
T ss_pred             CCcCcCCC
Confidence            99988764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.33  E-value=6.6e-12  Score=88.48  Aligned_cols=69  Identities=22%  Similarity=0.470  Sum_probs=56.6

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      ++|.|.+.|.|.|.  +.|+|++..+....       ......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~--v~W~k~~~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPT--VLWRKEDGELPKGR-------AEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCE--EEEEECCccCCCCc-------EEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            57999999999875  58999987664321       12236678999999999999999999999999998888764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.33  E-value=7.1e-12  Score=92.81  Aligned_cols=77  Identities=26%  Similarity=0.491  Sum_probs=59.4

Q ss_pred             CCCCCceEEEEeeeCCCCCCeeEEEeC--CEE----ccCCCcEEEccCCcEEEccCCCCCCEEEEEEEE-cCCCCceeeE
Q psy12061          1 YAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI----IGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT-NVHGMDESKG   73 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~----i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~-n~~g~~~~~~   73 (626)
                      ++.+|++++|.|.. +.|.|.|.|+|.  +..    +....|+.. .++.|.|.+++.+|+|.|+|.|. |..+.....+
T Consensus         7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~   84 (91)
T cd05871           7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY   84 (91)
T ss_pred             EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence            46799999999997 589999999983  322    122345544 45679999999999999999998 5767666778


Q ss_pred             EEEEEe
Q psy12061         74 RLIVLH   79 (626)
Q Consensus        74 ~l~v~~   79 (626)
                      .|.|..
T Consensus        85 ~l~v~~   90 (91)
T cd05871          85 TLHVIE   90 (91)
T ss_pred             EEEEec
Confidence            887753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.33  E-value=1.1e-11  Score=88.93  Aligned_cols=70  Identities=23%  Similarity=0.359  Sum_probs=58.2

Q ss_pred             cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ++.|.|.+.|.|.|.  +.|+|+|..+...       .++.+    ..+.|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~~l~c~~~G~P~p~--v~W~k~g~~l~~~-------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           1 SVRLEVPISGRPTPT--VTWSKDGKPLKLS-------GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             CEEEEeeEeeeCCCe--EEEEECCEEcCCC-------CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            478999999999985  5899999998543       22222    3568999999999999999999999999999888


Q ss_pred             EEE
Q psy12061        174 VIV  176 (626)
Q Consensus       174 l~v  176 (626)
                      |.|
T Consensus        72 l~V   74 (74)
T cd05748          72 VKV   74 (74)
T ss_pred             EEC
Confidence            764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.32  E-value=1.6e-11  Score=88.13  Aligned_cols=73  Identities=23%  Similarity=0.490  Sum_probs=58.9

Q ss_pred             CCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      |+++.|.|.+.+.|.|  .+.|++ ++..+....      .......+.|.|.++...|+|.|+|.|.|..|..+..+.|
T Consensus         1 G~~~~l~C~~~g~P~p--~v~W~~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEP--AIHWISPDGKLISNSS------RTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCC--EEEEEeCCCEEecCCC------eEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            7899999999999887  458997 666664321      1223466789999999999999999999999999888887


Q ss_pred             EE
Q psy12061        175 IV  176 (626)
Q Consensus       175 ~v  176 (626)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.32  E-value=2.1e-11  Score=92.74  Aligned_cols=87  Identities=14%  Similarity=0.241  Sum_probs=66.7

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec--------CCeEEEeecCCC
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID--------GGLLEITNASFA  152 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~  152 (626)
                      |+++.. +....+..|++++|.|.+.|.|.|. .+.|++++..+....     ..++.+.        .+.|.|.++..+
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i~~~~-----~~r~~i~~~~~~~~~~s~L~I~~v~~~   74 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENELESGS-----SGRYTVETDPSPGGVLSTLTISNTQES   74 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEccCCC-----CCCEEEEEecCCCceEEEEEECCcccc
Confidence            444443 4577789999999999999999884 458999999886532     1233321        147999999995


Q ss_pred             C-CEeEEEEEEeCCCceEEEEEE
Q psy12061        153 D-AGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       153 d-~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      | .|.|+|.|.|..|.....+.|
T Consensus        75 d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          75 DFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             ccceeEEEEEEcCCCcccEEEEe
Confidence            5 899999999999998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.31  E-value=1e-11  Score=92.65  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=66.2

Q ss_pred             CceEEecCCcEEEEEEecc-----cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         89 PKITIAAHRNLQLRCSAHT-----EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~-----~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      .+..+.+|+.+.|.|.+.+     .|.|  .|.|+|++..+....   ....++...++.|.|.+++.+|+|.|+|.+.|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~~---~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N   81 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIPT---EERSRMHQQKDLLWFLPAALEDSGLYTCVVRN   81 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCcccc---cccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence            4677889999999999999     5655  569999987653211   11245555678999999999999999999999


Q ss_pred             CCCceEEEEEEEE
Q psy12061        164 TVGKISTKTTVIV  176 (626)
Q Consensus       164 ~~g~~~~~~~l~v  176 (626)
                      ..|..+..+.|.|
T Consensus        82 ~~g~~~~~~~L~v   94 (94)
T cd05756          82 STYCMKVSISLTV   94 (94)
T ss_pred             CCccEEEEEEEEC
Confidence            9999988888764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.31  E-value=8.5e-12  Score=88.88  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=58.1

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +.|.|.+.|.|.|.  +.|+|++..+....      .......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus         1 v~l~C~~~g~P~p~--v~W~k~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   71 (71)
T cd05731           1 LLLECIAEGLPTPE--ISWIKIGGELPADR------TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCe--EEEEECCeECCCCc------eeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence            47999999999885  58999998775432      2223356789999999999999999999999999988888763

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.31  E-value=1.6e-11  Score=88.35  Aligned_cols=71  Identities=18%  Similarity=0.398  Sum_probs=54.3

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      ++|.|.+.|.|.|.  +.|+|+|.++.....    ...+....+.|.|.+++.+|+|.|+|.|.|..|....+..+.
T Consensus         1 v~L~C~~~g~P~p~--v~W~k~g~~l~~~~~----~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~   71 (77)
T cd05760           1 VTLRCHIDGHPRPT--YQWFRDGTPLSDGQG----NYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT   71 (77)
T ss_pred             CEEEEEeeecCCCc--EEEEECCEECCCCCc----cEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence            57999999999875  589999998865320    112223456899999999999999999999999875444333

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.31  E-value=1.2e-11  Score=88.31  Aligned_cols=72  Identities=24%  Similarity=0.467  Sum_probs=57.3

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV  176 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v  176 (626)
                      ++|.|.+.|.|.|.  +.|+|++.++....     ..++. ..++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~--v~W~k~~~~~~~~~-----~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPE--ITWFKDFLPVDTTS-----NGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCE--EEEEECCEECccCC-----CCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999885  48999999876321     13333 356789999999999999999999999985 67777776


Q ss_pred             e
Q psy12061        177 E  177 (626)
Q Consensus       177 ~  177 (626)
                      +
T Consensus        74 ~   74 (74)
T cd05738          74 R   74 (74)
T ss_pred             C
Confidence            3

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.30  E-value=1e-11  Score=91.61  Aligned_cols=79  Identities=22%  Similarity=0.370  Sum_probs=63.0

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST  170 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~  170 (626)
                      +....|++++|.|.+.+.|.|.  +.|+|++..+.....     .........|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~--i~W~k~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   76 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPD--ITWLKDNKPLTPTEI-----GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA   76 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCc--EEEEECCcCCcCCcc-----ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence            4567899999999999998875  589999988764321     111223468999999999999999999999999888


Q ss_pred             EEEEEE
Q psy12061        171 KTTVIV  176 (626)
Q Consensus       171 ~~~l~v  176 (626)
                      .+.|.|
T Consensus        77 ~~~v~v   82 (82)
T cd05856          77 TYKVDV   82 (82)
T ss_pred             EEEEeC
Confidence            877754

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.30  E-value=1.5e-11  Score=85.69  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      +.|.|.+.|.|.|.  +.|+|||.++....      .++...+..|.|.+++.+|+|.|+|.|.|..........+.
T Consensus         1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPE--VIWLKDGLPAAEKC------SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCe--EEEEECCEECCCCC------cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            47999999999985  48999999986532      34555667999999999999999999999866554444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.30  E-value=1.8e-11  Score=85.19  Aligned_cols=63  Identities=40%  Similarity=0.679  Sum_probs=53.5

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      +|++++|.|.+.+.|.+.+.|++++..+. ........++.|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            68999999999999999999999999887 3333334456899999999999999999998765

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=2e-11  Score=87.70  Aligned_cols=72  Identities=22%  Similarity=0.422  Sum_probs=56.6

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      ++|.|.+.|.|.|.  +.|+|+|.......    ...++.  ..++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~--v~W~k~~~~~~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQ--IAWQKDGGTDFPAA----RERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCE--EEEEeCCCccCCcc----cccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            47999999999885  58999986432211    112333  34578999999999999999999999999999998887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.29  E-value=1.5e-11  Score=87.20  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             EEEEEecccCCcceeEEEeeCCEEeccccCCccC--CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE--TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       100 ~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      .|.|.+.|.|.|.+  +|+|||.++.........  ........+.|.|.++...|+|.|+|.|.|..|..+.++.+.
T Consensus         2 ~i~~~v~G~P~Pti--~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTL--QWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCce--EEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            47899999999865  899999999754310000  000011345899999999999999999999999988877654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.29  E-value=1.4e-11  Score=91.81  Aligned_cols=79  Identities=20%  Similarity=0.414  Sum_probs=57.5

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCC----EEeccccCCcc------CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNEL------ETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~----~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      |++++|.|.+.+.|.|.  |+|+|++    ..+........      ...........|.|.+++.+|+|.|+|.|.|..
T Consensus         1 G~~v~l~C~v~g~P~P~--i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd04974           1 GSDVEFHCKVYSDAQPH--IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI   78 (90)
T ss_pred             CCcEEEEEEEeCCCCCe--EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence            78999999999999885  5899963    33321111000      000111133589999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy12061        166 GKISTKTTVIV  176 (626)
Q Consensus       166 g~~~~~~~l~v  176 (626)
                      |...+++.|.|
T Consensus        79 G~~~~sa~L~V   89 (90)
T cd04974          79 GPSHHSAWLTV   89 (90)
T ss_pred             CcccCCEEEEe
Confidence            99999999887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.28  E-value=5.3e-11  Score=86.15  Aligned_cols=69  Identities=29%  Similarity=0.450  Sum_probs=58.2

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      |.+..+..|+++.|.|.+.+ +.+  +|.|++||.++....      .++.+.++.|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~~~~------~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLTPES------AKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECCCCC------ceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            67889999999999999754 433  679999999997542      4666778899999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.28  E-value=5.5e-11  Score=88.84  Aligned_cols=81  Identities=22%  Similarity=0.358  Sum_probs=61.0

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      .|.+..+..|+++.|.|.+.|.| +  .+.|++ ++..+....      .....    ..+.|.|.+++.+|+|.|+|.|
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p-~--~i~W~~~~~~~~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   76 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEP-K--DISWFSPNGEKLVTQQ------QISVVQNDDVRSTLTIYNANIEDAGIYKCVA   76 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeC-C--eEEEECCCCCEeccCC------CEEEEeCCCCEEEEEEecCCcccCEEEEEEE
Confidence            46678899999999999999986 3  568997 676665421      11111    2248999999999999999999


Q ss_pred             EeCCC-ceEEEEEEEE
Q psy12061        162 KSTVG-KISTKTTVIV  176 (626)
Q Consensus       162 ~n~~g-~~~~~~~l~v  176 (626)
                      .|..| ..++++.|.|
T Consensus        77 ~N~~g~~~~~sv~l~~   92 (92)
T cd04977          77 TDAKGTESEATVNLKI   92 (92)
T ss_pred             EcCCCCcceeEEEEEC
Confidence            99865 5567776653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.27  E-value=2e-11  Score=88.29  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      |++++|.|.+.|.|.|.  +.|++++..+...       .++..    ..+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~--v~W~~~~~~~~~~-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743           1 GETVEFTCVATGVPTPI--INWRLNWGHVPDS-------ARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             CCEEEEEEEEEEecCCE--EEEEECCeECCCC-------CCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            78999999999999875  5899998887543       22221    23589999999999999999999999988776


Q ss_pred             EEEEE
Q psy12061        172 TTVIV  176 (626)
Q Consensus       172 ~~l~v  176 (626)
                      +.+.+
T Consensus        72 ~~~~~   76 (78)
T cd05743          72 PDGIL   76 (78)
T ss_pred             ccEEE
Confidence            66554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.26  E-value=3.2e-11  Score=90.04  Aligned_cols=79  Identities=23%  Similarity=0.471  Sum_probs=57.7

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeC----CEEeccccCCcc---CCCeeEe---cCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHN----GVRIGNMDLNEL---ETPNINI---DGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~----~~~~~~~~~~~~---~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      |++++|.|.+.+.|.|.  |.|+|+    |..+.....+..   .......   ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus         1 G~~v~L~C~~~g~P~P~--i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd05858           1 GSTVEFVCKVYSDAQPH--IQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI   78 (90)
T ss_pred             CCeEEEEEEEecCCCCE--EEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence            78999999999999885  589984    444443221100   0000000   12579999999999999999999999


Q ss_pred             CceEEEEEEEE
Q psy12061        166 GKISTKTTVIV  176 (626)
Q Consensus       166 g~~~~~~~l~v  176 (626)
                      |....++.|.|
T Consensus        79 G~~~~~a~L~V   89 (90)
T cd05858          79 GISHHSAWLTV   89 (90)
T ss_pred             CcccceEEEEE
Confidence            99999999887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.25  E-value=3.6e-11  Score=86.80  Aligned_cols=73  Identities=18%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             EEEEEecccCCcceeEEEeeCCEEeccccCCccCCCe-----eEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN-----INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       100 ~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      .|.|.+.|.|.|.+  +|+|||.++........ ..+     .....+.|.|.+++..|+|.|+|.|.|..|..+..+.+
T Consensus         2 ~i~~~v~G~P~P~v--~W~k~g~~i~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~   78 (81)
T cd04971           2 CIPFTVRGNPKPTL--TWYHNGAVLNESDYIRT-EIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA   78 (81)
T ss_pred             eEEEEeEeeCCCcE--EEEECCEECcCCCceeE-EEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence            37899999999855  89999999976531000 000     01124579999999999999999999999999888776


Q ss_pred             E
Q psy12061        175 I  175 (626)
Q Consensus       175 ~  175 (626)
                      .
T Consensus        79 ~   79 (81)
T cd04971          79 H   79 (81)
T ss_pred             e
Confidence            5

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.25  E-value=4.2e-11  Score=88.48  Aligned_cols=78  Identities=21%  Similarity=0.388  Sum_probs=63.7

Q ss_pred             eCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      .+|....+.+|++++|.|.+.+ .|.  ..+.|++++..+..         +....++.|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~~~~~---------~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPA--YTLVWTRVGGGLPS---------RAMDFNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCC--cEEEEEECCCcCCC---------cccccCCEEEECCCCHHHCEEEEEEEecc
Confidence            4677889999999999999976 444  46799999876532         12224678999999999999999999999


Q ss_pred             CCceEEEEEE
Q psy12061        165 VGKISTKTTV  174 (626)
Q Consensus       165 ~g~~~~~~~l  174 (626)
                      .|..+..+.|
T Consensus        75 ~g~~~~~~~l   84 (85)
T cd05754          75 LDTDEATATL   84 (85)
T ss_pred             CCeEeEEEEE
Confidence            9999888876

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.24  E-value=3.4e-10  Score=99.40  Aligned_cols=164  Identities=10%  Similarity=0.055  Sum_probs=100.9

Q ss_pred             CCceEEecCCcEEEEEEecccCC---------cceeEEEeeCCEEec--cccC----CccCCCeeEecCCeEEEeecCCC
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEEL---------LDVAYIWTHNGVRIG--NMDL----NELETPNINIDGGLLEITNASFA  152 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~---------p~~~i~W~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~i~~~~~~  152 (626)
                      ...+.+.+|+++.|.|.+.+.|.         ....++|+|++...-  ....    ......++...++.|.|.+++.+
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            35678899999999999877553         345779999876521  1000    00001122223679999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCC--CCcccEEEEEEeecCCCCceEeec
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN--GRPITHYKIIARTNWNSTWFNVSE  230 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~y~v~~~~~~~~~w~~~~~  230 (626)
                      |+|.|+|.|.|..|.....+.|.|..++   .++  ....+..+.|.|......  +.+.  -.|.        |.+.+.
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~---~~~--~~~~G~~v~L~C~~~~~~~~~~p~--p~I~--------WyKng~  173 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDSGT---INY--QFNSGKDSKLHCYGTDGISSTFKD--YTLT--------WYKNGN  173 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEecCC---ccc--eEecCCCEEEEeeCCCCccccCCC--ceEE--------EEECCE
Confidence            9999999999999888888888885332   222  223456788888743211  1111  1233        444333


Q ss_pred             ceeeeeeecc-CCceeEEEEeeccCCceEEEEEEEecC
Q psy12061        231 HVIGKEVDRY-TGRKEASIENVLVPWSTYEFKVIAGNE  267 (626)
Q Consensus       231 ~~~~~~~~~~-~~~~~~~i~~~l~~~~~y~~~v~a~n~  267 (626)
                      .+.....-.+ .....+.+.+ +...+.+.|+|.|...
T Consensus       174 ~l~~~~r~~~~~~~~~L~I~~-V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        174 IVLYTDRIQLRNNNSTLVIKS-ATHDDSGIYTCNLRFN  210 (227)
T ss_pred             ECCCCCCEEEeCCCCEEEECc-CCHHhCEEEEEEEEEe
Confidence            2211111011 1223566655 9999999999999875

>KOG3515|consensus

Probab=99.23  E-value=8.4e-10  Score=110.02  Aligned_cols=391  Identities=15%  Similarity=0.155  Sum_probs=216.7

Q ss_pred             CCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcE--EEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCceee--
Q psy12061          3 GEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRR--KIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDESK--   72 (626)
Q Consensus         3 ~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~--~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~--   72 (626)
                      ..|+...+.|.. .++|.+.+.|+|+......+...  .....+     .+.+.-+...|.|.|.|.|.|......++  
T Consensus       313 s~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~  392 (741)
T KOG3515|consen  313 SSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSS  392 (741)
T ss_pred             ccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccc
Confidence            568888888887 55688899999966544321100  111111     36666677889999999999887654443  


Q ss_pred             EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC
Q psy12061         73 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA  152 (626)
Q Consensus        73 ~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  152 (626)
                      ..+.|...|.++..........+++.....-.+.+.|... .+.|.+++.++....   ....++........+.++.+.
T Consensus       393 ~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~-~~~w~~~~~~~~~~~---g~~~~v~~~~~~~s~~~v~~~  468 (741)
T KOG3515|consen  393 FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAER-TFYWTFRLYKLSQVD---GGVVRVGAGAGLGSGVNVSRS  468 (741)
T ss_pred             eeccccCCchhhhhcccceeeccCccccccCcccCCCccc-chhheecceeccccc---CceEEeeccccccccceeeec
Confidence            5667777888777667777778888777776666777654 679999998887542   001233334455667889999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCCCC-CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecc
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGPPG-LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH  231 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~-~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~  231 (626)
                      |.|.|.|.+.|..|.+.....+.+...|. -+.+..+.....+++...+... +  .+...-.        ..|.+....
T Consensus       469 d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~-~--~~~~~~m--------~~~~r~ge~  537 (741)
T KOG3515|consen  469 DGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQD-E--QPQDQQM--------HHEPRSGEP  537 (741)
T ss_pred             cCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeecc-c--cccchhh--------hcccccCCC
Confidence            99999999999999998888877765443 3444445455555544333321 1  1111111        122221111


Q ss_pred             eeeee-----eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCC--CCCCCCCceeEee-------
Q psy12061        232 VIGKE-----VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA--DKPYQAPSRIGGG-------  297 (626)
Q Consensus       232 ~~~~~-----~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~--~~p~~~p~~~~~~-------  297 (626)
                      .....     ......+..+.+.. -.....|.+.|.+.+ .  +.++..........  ..-..+| ++...       
T Consensus       538 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~d~-~--~~pA~~~~~l~~~s~~~v~~~tp-~~~~~~~g~v~a  612 (741)
T KOG3515|consen  538 PSDQIDQDAPQQQLMAHAQLLVSG-NSSLQASETACVVDG-S--SPPAGLSLVLKAYSALIVTVRTP-NMYTAQEGCVNA  612 (741)
T ss_pred             CcccccccccccccCCccceeecc-cccccccceEEeecC-C--CCccccceEEEecccccccccCC-ceeeeccCcccc
Confidence            10000     00001111222222 444455677777666 1  11221111111110  0000111 11111       


Q ss_pred             -----cCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCC
Q psy12061        298 -----GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV  372 (626)
Q Consensus       298 -----~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~  372 (626)
                           ....-+....|...|.....+ ...|..-+..              ...+..+..+-+--++..|.+.|.+.|..
T Consensus       613 s~~~~a~~~~~~~~~~~k~p~~~~~~-~~~~~~~~~~--------------~~~~s~~~~~~~~~~~~~y~~~c~t~n~l  677 (741)
T KOG3515|consen  613 SDDCVASGVPSTSFTTAKTPLQTTEG-PHIREKATQQ--------------GQTHSSSEWILNHIDGSDYENGCTTQNLL  677 (741)
T ss_pred             cccceecccccceeecccCCCcccCC-ceEEEeeeec--------------cccccccccccCCcchhhhcceeeecccC
Confidence                 111223334444422211111 1111111100              01111222233445678899999999999


Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCC
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN  437 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~  437 (626)
                      |.+.-+.....-+...    .|.++.........+.|.|.+--+.     |.-.+|.+.|...+.
T Consensus       678 g~~~v~~~~~~~t~~~----~~~n~~~~~~~~~~i~l~~~p~fdg-----g~~q~f~~~~~~~~~  733 (741)
T KOG3515|consen  678 GSDHVSGAIHSGTASV----GPINLTYDNLTYSTISLEWMPGFDG-----GLQQRFFLKYYDLGT  733 (741)
T ss_pred             CCccccceecCCcCCC----CccceEeeeeeeeeeceeeeecccc-----ccccceeeehhhcCC
Confidence            9887766655444333    6779999999999999999986643     446678888765544

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=4.2e-11  Score=87.20  Aligned_cols=65  Identities=26%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      |.+|+.++|.|.+.+ .+.+.+.|+|+|..+...     ..+++|.|.+++.+|+|.|+|.|.|..|...+
T Consensus        11 V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753          11 VFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             ecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            578999999999954 567799999999877421     12457999999999999999999999886443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.22  E-value=7.8e-11  Score=86.45  Aligned_cols=77  Identities=19%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCE---EeccccCCccCCCee-EecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGV---RIGNMDLNELETPNI-NIDGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~---~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      |++++|.|.+.+.|.|.  +.|+|++.   .+....  .....++ ....+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPE--ITWEKQVHGKENLIMRP--NHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCc--EEEEecCCCCcceeecC--CcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            78999999999999875  58999742   111100  0001122 2245789999999999999999999999999888


Q ss_pred             EEEEE
Q psy12061        172 TTVIV  176 (626)
Q Consensus       172 ~~l~v  176 (626)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            88764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.21  E-value=7.4e-11  Score=86.88  Aligned_cols=81  Identities=26%  Similarity=0.334  Sum_probs=59.5

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      |++++|.|.+.+.+.|.+.+.|.+++..+.......  ..........+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            789999999999954445779998887654221000  000011123468999999999999999999999999999888


Q ss_pred             EEE
Q psy12061        174 VIV  176 (626)
Q Consensus       174 l~v  176 (626)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.20  E-value=6.5e-11  Score=86.90  Aligned_cols=74  Identities=24%  Similarity=0.403  Sum_probs=57.1

Q ss_pred             CceEEEEeeeCCCCC--CeeEEEeCCEEccC---CC--cEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061          5 GGNVTIFCNPEAAPK--PKFVWKKDGNIIGS---GG--RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         5 G~~~~l~C~~~g~p~--p~i~W~~~~~~i~~---~~--~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      |++++|.|.+.+.|.  .++.|.+.+..+..   ..  +....    ....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            899999999987654  48899987764321   11  11111    124699999999999999999999999989999


Q ss_pred             EEEEE
Q psy12061         74 RLIVL   78 (626)
Q Consensus        74 ~l~v~   78 (626)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            99885

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.20  E-value=7.7e-11  Score=86.71  Aligned_cols=68  Identities=21%  Similarity=0.321  Sum_probs=54.2

Q ss_pred             CCCCceEEEEeee-C----CCCCCeeEEEeCCEEccCCC-cEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNP-E----AAPKPKFVWKKDGNIIGSGG-RRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~----g~p~p~i~W~~~~~~i~~~~-~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|.+..|.|.- .    ..+.|+|.||||+.+|..+. +...+.+ +.|.|.+|..+|+|.|+|.|.+..|..
T Consensus         7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            4678999999973 2    34778999999999997544 3344333 479999999999999999999987663

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.19  E-value=8.7e-11  Score=84.24  Aligned_cols=67  Identities=24%  Similarity=0.438  Sum_probs=57.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      |.+|+++.|.|...+. .+.+.|++||..|..++|+....+| |.|.+++.+|+|.|+|.+. ..|-...
T Consensus         8 v~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~   74 (85)
T cd05872           8 VAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQL   74 (85)
T ss_pred             EecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence            5689999999999886 6699999999999888888888777 7799999999999999997 3344333

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.19  E-value=1.1e-10  Score=88.27  Aligned_cols=75  Identities=23%  Similarity=0.428  Sum_probs=56.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEE-c-------cCCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNI-I-------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-i-------~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.+.|.+.+.|++.+.. +       ..+.|+.+..    +.+|.|.+++.+|+|.|.|.+.+.. ..
T Consensus         9 v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~-~~   87 (95)
T cd05717           9 VVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP-VQ   87 (95)
T ss_pred             EcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC-Cc
Confidence            57899999999999988999999862221 1       1245666632    2369999999999999999999764 34


Q ss_pred             eeeEEEEE
Q psy12061         70 ESKGRLIV   77 (626)
Q Consensus        70 ~~~~~l~v   77 (626)
                      .+.+.|.|
T Consensus        88 ~~~~~~~v   95 (95)
T cd05717          88 TAKATVTV   95 (95)
T ss_pred             eEEEEEEC
Confidence            55566654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.18  E-value=1.7e-10  Score=83.17  Aligned_cols=72  Identities=29%  Similarity=0.555  Sum_probs=58.6

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +.|.|.+.|.|.|.  +.|+|++..+....     ..++.  ..+..|.|.+++.+|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 ~~L~C~v~g~P~p~--v~W~k~~~~l~~~~-----~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLPR--LTWLKNGMDITPKL-----SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCCE--EEEEECCEECCCCC-----CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            46999999998874  58999999886432     12222  23457999999999999999999999999999999988


Q ss_pred             e
Q psy12061        177 E  177 (626)
Q Consensus       177 ~  177 (626)
                      .
T Consensus        74 ~   74 (76)
T cd05736          74 E   74 (76)
T ss_pred             E
Confidence            6

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.17  E-value=3.3e-10  Score=84.87  Aligned_cols=82  Identities=29%  Similarity=0.556  Sum_probs=61.3

Q ss_pred             CceeeeCCCceEEec---CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC-CCCEe
Q psy12061         81 PSYYEQLPPKITIAA---HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF-ADAGE  156 (626)
Q Consensus        81 p~~~~~~~~~~~v~~---g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~  156 (626)
                      |.+.. .|.+..+.+   |.+++|.|.+.+.|.|  +|.|+|++..+....     ..++...++.|.|.++.. .|+|.
T Consensus         2 P~f~~-~p~~~~~~~~~~~~~~~l~C~~~g~p~p--~i~W~k~~~~l~~~~-----~~~~~~~~~~L~i~~~~~~~d~G~   73 (91)
T cd04967           2 PVFEE-QPDDTIFPEESDEGKVSLNCRARGSPPP--TYRWLMNGTEIDDEP-----DSRYSLVGGNLVISNPSKAKDAGR   73 (91)
T ss_pred             CeeEe-CCCCEEccCCCCCCEEEEEEeeeEcCCC--EEEEEECCEECCCCC-----CCCEEEECCEEEEecCCccCCCEE
Confidence            44444 355555443   4679999999999877  569999999884321     134556678999998874 89999


Q ss_pred             EEEEEEeCCCceEE
Q psy12061        157 YECVVKSTVGKIST  170 (626)
Q Consensus       157 Y~C~a~n~~g~~~~  170 (626)
                      |+|.|.|..|...+
T Consensus        74 Y~C~a~N~~G~~~S   87 (91)
T cd04967          74 YQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEcCCCEEEe
Confidence            99999999997644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.17  E-value=2.4e-10  Score=85.04  Aligned_cols=84  Identities=30%  Similarity=0.489  Sum_probs=67.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|+++...    ++.+.+|.|+|+........... ........+.+.+|+|++.|.|+|+|.
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~~~----~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~v~a~   76 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPSSG----NGPITGYRVEYRSVNSTSDWQEV-TVPGNETSYTITGLQPGTTYEFRVRAV   76 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESSST----SSSESEEEEEEEETTSSSEEEEE-EEETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred             cCcCeEEEECCCCEEEEEEECCCCC----CCCeeEEEEEEEecccceeeeee-eeeeeeeeeeeccCCCCCEEEEEEEEE
Confidence            6889999999999999999998622    26699999999877776523232 333444579999999999999999999


Q ss_pred             eCCCCCCCC
Q psy12061        473 NNAGEGPES  481 (626)
Q Consensus       473 ~~~g~s~~s  481 (626)
                      +..|.|++|
T Consensus        77 ~~~g~g~~S   85 (85)
T PF00041_consen   77 NSDGEGPPS   85 (85)
T ss_dssp             ETTEEEEEE
T ss_pred             eCCcCcCCC
Confidence            999987654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.16  E-value=2.9e-10  Score=84.10  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             ceEEecCCcEEEEEEecccCC---cceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         90 KITIAAHRNLQLRCSAHTEEL---LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      ...+.+|.++.|.|...+...   |...+.|+||+.++....      .+. ..++.|.|.++..+|+|.|+|.+.|..|
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~------~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR------KRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc------cEE-ecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence            456889999999998765332   344679999999987542      222 2778999999999999999999999988


Q ss_pred             ceEEEEEEE
Q psy12061        167 KISTKTTVI  175 (626)
Q Consensus       167 ~~~~~~~l~  175 (626)
                      .....+...
T Consensus        77 ~~~~~~t~t   85 (92)
T cd05757          77 GKQYNVTRT   85 (92)
T ss_pred             CEEEEEEEE
Confidence            776655444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.16  E-value=2.1e-10  Score=85.52  Aligned_cols=85  Identities=20%  Similarity=0.380  Sum_probs=59.2

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc-ccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN-MDLNELETPNINI-----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      ..+..+.+|+++.|.|.+.+.|.|.  +.|++++..+.. .........|+..     ....|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~--v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSS--LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCe--EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence            4678999999999999999998775  589998764321 1111111234432     2468999999999999999999


Q ss_pred             EeCCCceEEEEEEE
Q psy12061        162 KSTVGKISTKTTVI  175 (626)
Q Consensus       162 ~n~~g~~~~~~~l~  175 (626)
                      .. .-..++.+.|.
T Consensus        82 ~t-~~~~~~~~~~~   94 (95)
T cd05882          82 FT-MPVRTAKATVT   94 (95)
T ss_pred             Ee-eccccEEEEEE
Confidence            87 33444444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>KOG4258|consensus

Probab=99.15  E-value=1.3e-09  Score=107.37  Aligned_cols=291  Identities=16%  Similarity=0.238  Sum_probs=176.1

Q ss_pred             eEEEEEeccceEEEEecCCC-CCCcccEEEEEEeec--------------CCCCceEeecceeeeeeeccCCceeEEEEe
Q psy12061        186 VQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTN--------------WNSTWFNVSEHVIGKEVDRYTGRKEASIEN  250 (626)
Q Consensus       186 ~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~--------------~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~  250 (626)
                      +.....+.+++.|+|..-.. +.....+|.+.|+..              +...|........  ....-.+........
T Consensus       494 ~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~--~~~p~~~~~~~~~l~  571 (1025)
T KOG4258|consen  494 FSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP--DLIPNDGTHPGFLLD  571 (1025)
T ss_pred             eeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCC--cCCCccccccceehh
Confidence            44456678999999985322 224467888887642              2245655443332  000001122233344


Q ss_pred             eccCCceEEEEEEEecCC--ccCC-CCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEE
Q psy12061        251 VLVPWSTYEFKVIAGNEL--GYGE-PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW  327 (626)
Q Consensus       251 ~l~~~~~y~~~v~a~n~~--g~~~-~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~  327 (626)
                      +|+|.+.|-|.|++....  +... .-+....++|.+..| .+|..+-....++..+.|+|++  |...++.+..|.|.|
T Consensus       572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P-spPl~~ls~snsSsqi~l~W~p--P~~pNG~lt~Ylv~w  648 (1025)
T KOG4258|consen  572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP-SPPLDVLSKSNSSSQILLKWKP--PSQPNGNLTHYLVVW  648 (1025)
T ss_pred             cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC-CCcchhhhccCcchheeEEecC--CCCCCCceeEEEEEE
Confidence            599999999999987332  2111 223344678888877 5666666666677899999998  778899999999988


Q ss_pred             EecCCC------------------------cceeee--------------------------------------------
Q psy12061        328 RKKNDT------------------------EFQSET--------------------------------------------  339 (626)
Q Consensus       328 ~~~~~~------------------------~~~~~~--------------------------------------------  339 (626)
                      +.....                        .|+...                                            
T Consensus       649 er~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~  728 (1025)
T KOG4258|consen  649 ERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIF  728 (1025)
T ss_pred             EeccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceee
Confidence            765311                        000000                                            


Q ss_pred             ee-----------e---------------------------------ecceeeEEEEeCCCcceeEEEEEEEEecCCCC-
Q psy12061        340 LK-----------E---------------------------------YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP-  374 (626)
Q Consensus       340 ~~-----------~---------------------------------~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~-  374 (626)
                      +.           .                                 ..+.....+.+.+|+..+.|.+.+.|.|..+. 
T Consensus       729 vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~  808 (1025)
T KOG4258|consen  729 VPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPK  808 (1025)
T ss_pred             ecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccccc
Confidence            00           0                                 00011223456788889999999999997764 


Q ss_pred             ---CCCCccEEEEccCCC-CCCCCCceEEEe-eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE-EEEec
Q psy12061        375 ---GPESEVVTIFSAEDM-PQVAPQGVFSRG-FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV-YYLSR  448 (626)
Q Consensus       375 ---~~~s~~~~~~t~~~~-p~~~p~~~~~~~-~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~  448 (626)
                         |.. ..+..+|.... ...-|..+.-.. ...+++.|+|.+|..++    |.|..|.|.|+.......... .....
T Consensus       809 ~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pN----Gli~~Y~Vk~r~~~~et~v~cvsR~~~  883 (1025)
T KOG4258|consen  809 CGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPN----GLILNYEVKYRRNGDETHVECVSRMDY  883 (1025)
T ss_pred             cccchh-hhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCC----ccEEEEEEEEeeccCcchhhhhhhhhh
Confidence               332 22333443221 111222222222 37889999999987654    889999999986665432211 01111


Q ss_pred             CccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEe
Q psy12061        449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER  487 (626)
Q Consensus       449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~  487 (626)
                      .......+..|.|| .|.++|+|..-+|.|++.++..+.
T Consensus       884 ~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~  921 (1025)
T KOG4258|consen  884 AKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFY  921 (1025)
T ss_pred             hhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceE
Confidence            22234678888885 899999999999999887665543

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.15  E-value=5.6e-10  Score=82.86  Aligned_cols=82  Identities=13%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--------cCCeEEEeecCCCC-CEeE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--------DGGLLEITNASFAD-AGEY  157 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d-~g~Y  157 (626)
                      ......+..|++++|.|.+.+.|.|. .|.|..++..+....     ..++.+        ..+.|.|.++...| .|.|
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i~~~~-----~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVLESGT-----SERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccccCCC-----CCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            46778899999999999999888875 556776666665431     123332        34689999998877 7999


Q ss_pred             EEEEEeCCCceEEEEEE
Q psy12061        158 ECVVKSTVGKISTKTTV  174 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l  174 (626)
                      .|.|.|..|..+..+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998887766

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.15  E-value=1.3e-10  Score=83.76  Aligned_cols=71  Identities=28%  Similarity=0.547  Sum_probs=53.8

Q ss_pred             EEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         99 LQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        99 ~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ++|.|.+.+ .|.|  ++.|+|+|.++.......  ..++.  ...+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~l~C~~~g~~P~p--~~~W~k~g~~l~~~~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSL--RFKWFKDGKELNRKNKPR--NIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCc--eEEEEcCCeeccccCCcc--eEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 8876  558999999887542100  00111  13468999999999999999999999999877765

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.14  E-value=3.5e-10  Score=83.01  Aligned_cols=83  Identities=24%  Similarity=0.331  Sum_probs=61.7

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc---CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      |++++|.|.+.+.+.+.+.+.|.+.+...........   .........+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            7899999999998877788999987765422110000   0000112346899999999999999999999999999999


Q ss_pred             EEEEeC
Q psy12061        173 TVIVEG  178 (626)
Q Consensus       173 ~l~v~~  178 (626)
                      .|.|++
T Consensus        81 ~~~V~~   86 (86)
T cd05862          81 IVIVHE   86 (86)
T ss_pred             EEEEeC
Confidence            988863

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.13  E-value=2.7e-10  Score=82.71  Aligned_cols=76  Identities=26%  Similarity=0.335  Sum_probs=53.6

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccC-CccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-NELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVI  175 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~  175 (626)
                      ++|.|.+.|.|.|.  +.|+|++........ ......++. ..++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus         1 v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPT--IVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCE--EEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            57999999999885  589997443221110 000123443 356899999999999999999999999976 5566654


Q ss_pred             E
Q psy12061        176 V  176 (626)
Q Consensus       176 v  176 (626)
                      |
T Consensus        79 ~   79 (79)
T cd05734          79 V   79 (79)
T ss_pred             C
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.13  E-value=2.9e-10  Score=81.81  Aligned_cols=65  Identities=26%  Similarity=0.545  Sum_probs=50.7

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCC----CCCEeEEEEEEeCCCceEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASF----ADAGEYECVVKSTVGKIST  170 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~a~n~~g~~~~  170 (626)
                      ++|.|.+.|.|.|.  |+|+|||..+....     ..++.  ...+.|.|.++..    +|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~--v~W~k~g~~l~~~~-----~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPT--FSWTRNGTHFDPEK-----DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCe--EEEEECCeECCCCC-----CCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            47999999999884  58999999885432     12332  3578999999854    6899999999999997643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>KOG3515|consensus

Probab=99.13  E-value=1.2e-08  Score=102.10  Aligned_cols=174  Identities=14%  Similarity=0.190  Sum_probs=110.6

Q ss_pred             CCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          3 GEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         3 ~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      .+|+.+.|.|.+. |+|.++++|+++..++...+......+|     ++.+..-..++.-.-.|.|.|   .......+.
T Consensus       219 ~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~ta  295 (741)
T KOG3515|consen  219 TEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITA  295 (741)
T ss_pred             cccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeee
Confidence            5899999999884 4699999999998877543111111122     344444444555667799998   333445556


Q ss_pred             EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      |..+|......+....+..|++..+.|...+..+ ...+.|+++....... ...........+....+.+......|.|
T Consensus       296 v~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p-~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g  374 (741)
T KOG3515|consen  296 VQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKP-PAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGG  374 (741)
T ss_pred             cccccccccccCcccccccccccccceeccCCCC-ccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCc
Confidence            6566666555666777899999999998776543 3477999976655433 1111111111122234555667888999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      .|+|.+.+.....+.+....+...|
T Consensus       375 ~v~c~a~~~~~~~~sss~~~l~~l~  399 (741)
T KOG3515|consen  375 QVTCPADNLELAHSSSSSFLLPVLP  399 (741)
T ss_pred             eEEccccccccccccccceeccccC
Confidence            9999999887665555555544433

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.12  E-value=5.8e-10  Score=83.18  Aligned_cols=85  Identities=20%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC-
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV-  165 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~-  165 (626)
                      +|..+.+.+|+++.|.|.+.+ |.+  ++.|+|++..+.....   ...++....+.|.|.+++.+|+|.|+|.|.+.. 
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~--~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLA--SVVWLFQGGPLQRKEE---PEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCc--eEEEEECCcccccccC---cCceEEEcCCCEEEccCCHHHCEEEEEEEecCcc
Confidence            456778999999999999877 544  5699999987754321   123455556779999999999999999998754 


Q ss_pred             CceEEEEEEEEe
Q psy12061        166 GKISTKTTVIVE  177 (626)
Q Consensus       166 g~~~~~~~l~v~  177 (626)
                      +..+.+..|.|.
T Consensus        76 ~~~~~~~~l~V~   87 (89)
T cd04979          76 KQTLATYSLNVL   87 (89)
T ss_pred             ceeEeEEEEEEe
Confidence            456777777765

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.11  E-value=4.9e-10  Score=80.31  Aligned_cols=67  Identities=19%  Similarity=0.368  Sum_probs=50.0

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC----CCEeEEEEEEeCCCceEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA----DAGEYECVVKSTVGKIST  170 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----d~g~Y~C~a~n~~g~~~~  170 (626)
                      +.|.|.+.|.|.|.  |+|+|||.++.....   ....+...++.|.|..+...    |.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~--i~W~k~g~~l~~~~~---~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPS--FSWTRNGTHFDIDKD---PKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCe--EEEEECCeECCCcCC---CCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            47999999999885  589999998753211   01122335788999888643    789999999999998654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.11  E-value=1.2e-10  Score=80.78  Aligned_cols=58  Identities=33%  Similarity=0.647  Sum_probs=47.4

Q ss_pred             CceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCCc-----EEEccCCCCCCEEEEEEE
Q psy12061          5 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         5 G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~-----L~i~~v~~~d~G~Y~C~a   62 (626)
                      |++++|.|.+ .+.+.+.+.|+|++..+..........++.     |.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 777888999999998775544444433332     999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.11  E-value=2.4e-10  Score=84.41  Aligned_cols=67  Identities=21%  Similarity=0.403  Sum_probs=51.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc--------------CCCcEEEc----cCC--cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG--------------SGGRRKIF----ENG--NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~--------------~~~~~~~~----~~g--~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++|+|.|.+.+.+.+.|.|++++....              ..+|..+.    .+|  +|.|.+++.+|+|.|.|.
T Consensus         4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~   83 (94)
T cd07690           4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE   83 (94)
T ss_pred             eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence            5789999999999999999999998763321              11222222    223  499999999999999999


Q ss_pred             EEcCCCC
Q psy12061         62 ATNVHGM   68 (626)
Q Consensus        62 a~n~~g~   68 (626)
                      +.|..++
T Consensus        84 v~~~~~~   90 (94)
T cd07690          84 VEDKKEE   90 (94)
T ss_pred             ECCccce
Confidence            9987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.09  E-value=8.4e-10  Score=79.10  Aligned_cols=65  Identities=23%  Similarity=0.495  Sum_probs=49.2

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCC----CCCEeEEEEEEeCCCceEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASF----ADAGEYECVVKSTVGKIST  170 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~a~n~~g~~~~  170 (626)
                      +.|.|.+.|.|.|.  ++|+|+|..+....     ..++.  ..++.|.|.++..    .|+|.|+|.|.|..|...+
T Consensus         1 ~~l~C~~~G~P~P~--v~W~k~g~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPT--FQWTRNGKFFNVAK-----DPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCE--EEEEECCEEccCcC-----CCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            47999999999885  58999998774321     12333  3578999998742    4699999999999997644

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>smart00409 IG Immunoglobulin

Probab=99.09  E-value=1e-09  Score=81.88  Aligned_cols=76  Identities=37%  Similarity=0.675  Sum_probs=65.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC-CEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.+...   .+|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            56899999999999988889999998 888876667676655   47999999999999999999988888777676665

>smart00410 IG_like Immunoglobulin like

Probab=99.09  E-value=1e-09  Score=81.88  Aligned_cols=76  Identities=37%  Similarity=0.675  Sum_probs=65.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC-CEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.+...   .+|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            56899999999999988889999998 888876667676655   47999999999999999999988888777676665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.08  E-value=1.2e-09  Score=81.94  Aligned_cols=87  Identities=18%  Similarity=0.342  Sum_probs=60.0

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEec-cccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINI-----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~-~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .++++.+.+|++++|.|.+.+.|.+.  +.|++.+..+. ..+.......|+..     ....|+|.+++.+|+|.|+|.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~--v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceE--EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEE
Confidence            36788999999999999999998765  58986433211 01100111234432     335899999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy12061        161 VKSTVGKISTKTTVIV  176 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v  176 (626)
                      +.+. ...+..+.|.|
T Consensus        81 ~~t~-~~~~~~~~l~v   95 (95)
T cd07701          81 LFTM-PVKTSKAYLTV   95 (95)
T ss_pred             eEee-cCccEEEEEEC
Confidence            9984 33466666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.08  E-value=6.8e-10  Score=79.93  Aligned_cols=71  Identities=37%  Similarity=0.639  Sum_probs=52.0

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      +.|.|.+.+.+ |.+.+.|+|+|..+.....   ...++..    ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~-p~~~~~W~~~g~~i~~~~~---~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEY-PSLRFKWFKNGKEIGAKNK---PDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCC-CCCceEEEECCcccccCCC---CCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            47999987542 2346799999998864321   0122221    3468999999999999999999999998877765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.05  E-value=9.5e-10  Score=80.09  Aligned_cols=67  Identities=18%  Similarity=0.230  Sum_probs=53.0

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ...+.+|++++|.|.+..... ...+.|+|+|..+...           .....|.|.+++.+|+|.|+|.+.+..|..
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~-~~~~~w~k~g~~~~~~-----------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKP-VYKVTYYRDGKAKKYS-----------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCc-ceEEEEEECCeEcccc-----------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            447899999999999864332 2467999999876421           135689999999999999999999998854

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.05  E-value=8.9e-10  Score=77.78  Aligned_cols=63  Identities=17%  Similarity=0.326  Sum_probs=48.9

Q ss_pred             eEEEEeeeCC-CCCCeeEEEeCCEEccCCCc-----EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          7 NVTIFCNPEA-APKPKFVWKKDGNIIGSGGR-----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         7 ~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~-----~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      .+.|+|...+ .|+++|.||||+++|.....     ......++|.|.....+|.+.|.|.|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            4789999955 59999999999999964211     111123469999999999999999999988764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.04  E-value=1.5e-09  Score=82.19  Aligned_cols=67  Identities=28%  Similarity=0.526  Sum_probs=53.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCE-----Ec--------------cCCCcEEEccCCcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-----II--------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~i--------------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|.|.|.....+...+.|+|+..     .|              .-.+|..+..+|+|.|.+++.+|+|.|.|.+
T Consensus        10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v   89 (105)
T cd05774          10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQT   89 (105)
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEE
Confidence            6789999999977554445999999621     22              0247888889999999999999999999999


Q ss_pred             EcCCCC
Q psy12061         63 TNVHGM   68 (626)
Q Consensus        63 ~n~~g~   68 (626)
                      .+....
T Consensus        90 ~~~~~~   95 (105)
T cd05774          90 ITTNFQ   95 (105)
T ss_pred             EeCCcc
Confidence            988743

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.03  E-value=2e-09  Score=80.02  Aligned_cols=82  Identities=20%  Similarity=0.316  Sum_probs=61.9

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST  170 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~  170 (626)
                      ..+..|++++|.|.+.+.|.+  .+.|++++..+........  .........|.|.++..+|.|.|+|.+.|..|..+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~--~v~W~k~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRP--TITWLKDGKPFKKEHRIGG--YKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCC--eEEEEECCEECcccCceeE--EEccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            456789999999999998876  4599999988764321000  011112347999999999999999999999999888


Q ss_pred             EEEEEE
Q psy12061        171 KTTVIV  176 (626)
Q Consensus       171 ~~~l~v  176 (626)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05729          80 TYKVDV   85 (85)
T ss_pred             EEEEeC
Confidence            877763

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.02  E-value=1.3e-09  Score=80.03  Aligned_cols=76  Identities=21%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             CCCCceEEEEeeeC-----------CCCCCeeEEEeCCEEccCCC-----cEEEc-cCCcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPE-----------AAPKPKFVWKKDGNIIGSGG-----RRKIF-ENGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-----------g~p~p~i~W~~~~~~i~~~~-----~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+||.+.|.|..-           ......+.|+|++..+....     ..++. .++.|.|..+..+|+|.|.|++.|
T Consensus        12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN   91 (104)
T cd05896          12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRN   91 (104)
T ss_pred             EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECC
Confidence            67999999999971           11234899999976554322     11332 456799999999999999999999


Q ss_pred             CCCCceeeEEEEE
Q psy12061         65 VHGMDESKGRLIV   77 (626)
Q Consensus        65 ~~g~~~~~~~l~v   77 (626)
                      ..........|.|
T Consensus        92 ~t~C~~~~i~l~V  104 (104)
T cd05896          92 STYCMKVSMSLTV  104 (104)
T ss_pred             CCcceEEEEEEEC
Confidence            8766666665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.01  E-value=7.1e-10  Score=81.38  Aligned_cols=69  Identities=36%  Similarity=0.642  Sum_probs=54.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.+.|.+.+.|++++..+....       +.|.|.++..+|+|.|+|.|.+..+. ....+.|.|
T Consensus        11 v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   11 VEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            5689999999999999999999999998886322       12778999999999999999996653 333445443

...

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.99  E-value=2.6e-09  Score=78.17  Aligned_cols=77  Identities=23%  Similarity=0.453  Sum_probs=54.9

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee----EecCCeEEEeecCCCCCEeEEEEEEeCCC--ceE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI----NIDGGLLEITNASFADAGEYECVVKSTVG--KIS  169 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g--~~~  169 (626)
                      |++++|.|.+.+.|.+  .+.|.+++....... ..  ..+.    ......|.|.+++.+|+|.|+|.|.|..+  ..+
T Consensus         1 Ge~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-~~--~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   75 (84)
T cd05861           1 GETITVNCIVQGNEVV--DFSWTYPGKDIGKGI-PE--VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAF   75 (84)
T ss_pred             CCcEEEEEEEECCCcc--EEEEEECCccCCCCc-eE--EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCccee
Confidence            7899999999998765  568998776432110 00  0011    11245899999999999999999999876  567


Q ss_pred             EEEEEEEe
Q psy12061        170 TKTTVIVE  177 (626)
Q Consensus       170 ~~~~l~v~  177 (626)
                      +++.|.|.
T Consensus        76 ~sv~i~V~   83 (84)
T cd05861          76 KKVNITVH   83 (84)
T ss_pred             EEEEEEEe
Confidence            77777664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.99  E-value=4e-09  Score=77.78  Aligned_cols=64  Identities=19%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------cCCCcEEEcc-CC---cEEEccCCCCCCEEEEEEEEcC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE-NG---NLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------~~~~~~~~~~-~g---~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      +.+|++|+|+|.+.+.....+.|++-+..+        ..+.|+.+.. ++   +|.|.+++.+|+|.|.|.+...
T Consensus         9 v~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           9 VVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             EcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            578999999999999876778888755332        3567777665 33   5999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.94  E-value=1e-08  Score=76.01  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEE-eCCC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVG  166 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~-n~~g  166 (626)
                      .+.+.+|++++|.|.. ..|.|  .+.|++.  +...... .  ....+.....+.|.|.+++.+|+|.|+|.|. |..+
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p--~v~Wykq~~g~~~~~~-~--~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQA--SVKWLFQRGGDQRKEE-V--KTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCc--eEEEEEECCCCCcccc-c--cccccEEEecCeEEEeeCChhHCEEEEEEEEccCCe
Confidence            3567899999999996 46655  5689984  3222111 0  0124555667889999999999999999997 5777


Q ss_pred             ceEEEEEEEEeC
Q psy12061        167 KISTKTTVIVEG  178 (626)
Q Consensus       167 ~~~~~~~l~v~~  178 (626)
                      .....+.|.|..
T Consensus        79 ~~~~~~~l~v~~   90 (91)
T cd05871          79 QTLAKYTLHVIE   90 (91)
T ss_pred             EEEEEEEEEEec
Confidence            677788887753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.94  E-value=3.3e-09  Score=77.77  Aligned_cols=79  Identities=14%  Similarity=0.270  Sum_probs=61.7

Q ss_pred             CceeeeCCCceEEecCCcEEEEEE-ecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCE-eE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCS-AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAG-EY  157 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~-~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g-~Y  157 (626)
                      |.+.....+.+.+.+|+.+.|.|. ..+.|.|  .|.|++++......      +.|+.+ .++.|.|.+++.+|+| .|
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P--~i~W~~~~~~~i~~------~~Ri~~~~~GnL~fs~v~~~D~g~~Y   74 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPL--RIYWMNSDLLHITQ------DERVSMGQNGNLYFANVEEQDSHPDY   74 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCC--EEEEECCCCccccc------cccEEECCCceEEEEEEehhhCCCCe
Confidence            445555667899999999999997 6888877  45899876553322      256655 5699999999999999 89


Q ss_pred             EEEEEeCCCc
Q psy12061        158 ECVVKSTVGK  167 (626)
Q Consensus       158 ~C~a~n~~g~  167 (626)
                      .|.|.|....
T Consensus        75 ~C~a~~~~~~   84 (95)
T cd05845          75 ICHAHFPGLR   84 (95)
T ss_pred             EEEEEccccc
Confidence            9999988644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.94  E-value=5.1e-09  Score=76.81  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=63.7

Q ss_pred             CCCCceEEEEeeeCCCCCCe-eEEEeCCEEccCCCc--EEEccC------CcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGR--RKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~i~~~~~--~~~~~~------g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      |.+|+++.|.|.+.+.|+|+ +.|.+++..+.+...  +.....      ..|.+..++.+|+|.|+|.|.|..+.....
T Consensus        15 v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t   94 (101)
T cd05860          15 VNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT   94 (101)
T ss_pred             EECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence            67999999999999999997 999999887754333  211111      249999999999999999999999999888


Q ss_pred             EEEEEE
Q psy12061         73 GRLIVL   78 (626)
Q Consensus        73 ~~l~v~   78 (626)
                      +.|.|.
T Consensus        95 F~l~v~  100 (101)
T cd05860          95 FNVYVN  100 (101)
T ss_pred             EEEEEe
Confidence            888773

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.93  E-value=1.2e-08  Score=77.22  Aligned_cols=86  Identities=21%  Similarity=0.367  Sum_probs=57.4

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEe-ccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      ++++.+.+|++++|.|.+.+.+.+  .+.|++.+..+ ...........|+..     ....|+|.+++.+|+|.|+|.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNS--SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCc--eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence            467889999999999999887765  56898633221 111110011234433     2357999999999999999999


Q ss_pred             EeCCCceEEEEEEEE
Q psy12061        162 KSTVGKISTKTTVIV  176 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v  176 (626)
                      .+... .++.+.|.|
T Consensus        82 ~~~~~-~~~~~~~~v   95 (95)
T cd05717          82 YTMPV-QTAKATVTV   95 (95)
T ss_pred             ecCCC-ceEEEEEEC
Confidence            87653 355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.90  E-value=7.2e-09  Score=76.19  Aligned_cols=78  Identities=18%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             eeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEE
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      ........+.+|+.+.|.|.... .|.  +.|.|++++.++....    +..++.. .++.|.|.+++.+|+|.|+|.|.
T Consensus         7 ~~~~~~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~~----d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~   80 (96)
T cd05727           7 LEERDEVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIPE----DGRRFVSQTNGNLYIAKVEASDRGNYSCFVS   80 (96)
T ss_pred             cCCcCceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCccccccc----CCCeEEeCCCCcEEEeecCHhhCceeEEEEE
Confidence            34456678999999999997654 454  4679999987643210    1123333 47999999999999999999999


Q ss_pred             eCCCce
Q psy12061        163 STVGKI  168 (626)
Q Consensus       163 n~~g~~  168 (626)
                      |.....
T Consensus        81 n~~~~~   86 (96)
T cd05727          81 SPSSTK   86 (96)
T ss_pred             ecccCC
Confidence            986543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.88  E-value=9.2e-09  Score=77.53  Aligned_cols=64  Identities=28%  Similarity=0.507  Sum_probs=52.0

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEcc------------------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIG------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~------------------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |++|+|.|.....+...|.|+|+.....                  -.+|..+..+++|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            8999999999876667999999653321                  1256777778899999999999999999999876


Q ss_pred             CC
Q psy12061         67 GM   68 (626)
Q Consensus        67 g~   68 (626)
                      |.
T Consensus        81 ~~   82 (92)
T cd05741          81 GV   82 (92)
T ss_pred             Cc
Confidence            44

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.87  E-value=1.5e-08  Score=70.25  Aligned_cols=63  Identities=25%  Similarity=0.605  Sum_probs=51.3

Q ss_pred             cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      +|++++|.|.+.+.+.+  .+.|++++..+..       ..........|.|.+++..|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVP--NITWLKDGKPLPE-------SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCC--eEEEEECCEECCC-------CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999998877765  5689999988762       134444677999999999999999999998765

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.86  E-value=1.6e-08  Score=73.92  Aligned_cols=64  Identities=20%  Similarity=0.550  Sum_probs=47.9

Q ss_pred             eEEEEeeeCC-CCCCeeEEEeCCEEccCCCc-EEEccCC-------cEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          7 NVTIFCNPEA-APKPKFVWKKDGNIIGSGGR-RKIFENG-------NLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         7 ~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~-~~~~~~g-------~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      .+.|.|.+.| .|.|.|+|+|+|++|..... ..+..+|       .|.|.....+|.|.|+|.|.|......
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~   73 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG   73 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence            3689999987 58899999999999864321 1222332       478888888899999999998765533

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.85  E-value=2.5e-08  Score=73.40  Aligned_cols=86  Identities=12%  Similarity=0.239  Sum_probs=61.7

Q ss_pred             ceEEecCCcEEEEEEecc---------cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         90 KITIAAHRNLQLRCSAHT---------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~---------~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .+.+.+|+.+.|.|....         .....+.+.|+|++..+....-......|+...+..|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            467889999999999621         01122467999998655543100011248888999999999999999999999


Q ss_pred             EEeCCCceEEEEEEE
Q psy12061        161 VKSTVGKISTKTTVI  175 (626)
Q Consensus       161 a~n~~g~~~~~~~l~  175 (626)
                      +.|...-....+.|.
T Consensus        89 ~rN~t~C~~~~i~l~  103 (104)
T cd05896          89 LRNSTYCMKVSMSLT  103 (104)
T ss_pred             ECCCCcceEEEEEEE
Confidence            999876655565554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.85  E-value=9e-09  Score=76.09  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc-------cCCCeeEe-------cCCeEEEeecCCCCCEe
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-------LETPNINI-------DGGLLEITNASFADAGE  156 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~l~i~~~~~~d~g~  156 (626)
                      +.+.+|++++|.|.+.+.+.+  .+.|++++........+.       ....|+..       ....|.|.+++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~--~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCc--EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence            357899999999999988765  558998763321100000       01122221       22469999999999999


Q ss_pred             EEEEEEeCCCce
Q psy12061        157 YECVVKSTVGKI  168 (626)
Q Consensus       157 Y~C~a~n~~g~~  168 (626)
                      |+|.+.|..+..
T Consensus        80 Y~C~v~~~~~~~   91 (94)
T cd07690          80 YICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCccceE
Confidence            999999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.83  E-value=2.7e-08  Score=73.29  Aligned_cols=72  Identities=19%  Similarity=0.301  Sum_probs=53.0

Q ss_pred             eEEecCCcEEEEEEe-ccc--CCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         91 ITIAAHRNLQLRCSA-HTE--ELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~-~~~--p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ..+..|.+..|.|.- .+-  +.+..++.|+||+.++....      .+...  +.+.|.|.++..+|+|.|+|.+.+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~------~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN------EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC------cceEecCCCCEEEEEEcChhhCEEEEEEEEEee
Confidence            456789999999972 221  23334679999999986432      22222  45689999999999999999999987


Q ss_pred             Cce
Q psy12061        166 GKI  168 (626)
Q Consensus       166 g~~  168 (626)
                      |..
T Consensus        79 ~g~   81 (95)
T cd05897          79 EGK   81 (95)
T ss_pred             CCE
Confidence            654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA03376 BARF1; Provisional

Probab=98.79  E-value=7.7e-08  Score=77.35  Aligned_cols=117  Identities=18%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             CCCCceEEEEeeeCCC---CCCeeEEEeCCE-----Ec------------cCCCcEEEccC-C--cEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAA---PKPKFVWKKDGN-----II------------GSGGRRKIFEN-G--NLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p~i~W~~~~~-----~i------------~~~~~~~~~~~-g--~L~i~~v~~~d~G~Y   58 (626)
                      +..|+++.|+|.....   +.-.|.|+|.+.     -+            ...++..++.+ |  +|.|.+++.+|.|.|
T Consensus        23 a~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY  102 (221)
T PHA03376         23 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY  102 (221)
T ss_pred             heeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceE
Confidence            4679999999998633   445999999431     11            12244444332 2  599999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC
Q psy12061         59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG  121 (626)
Q Consensus        59 ~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~  121 (626)
                      +|...-........-.|.+..+-....... ......-+..++.|...+-|.|.+  .|.-+.
T Consensus       103 ~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~-~~dFp~~~~~~i~C~sggfP~P~~--~Wle~~  162 (221)
T PHA03376        103 LCRMKLGETEVTKQEHLSVVKPLTLSVHSE-RSQFPDFSVLTVTCTVNAFPHPHV--QWLMPE  162 (221)
T ss_pred             EEEEEcCCCceeeeeeeeeeecceEEEEec-cccCCCCCeeEEEEecCCcCCchh--eecccc
Confidence            999997766666666666644332221110 000112567899999888888865  798653

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.79  E-value=2.6e-08  Score=75.19  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=55.7

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEcc--C---------------CCcEEEccC-CcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIG--S---------------GGRRKIFEN-GNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~--~---------------~~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +..|++|+|.|.... .....|.|+|....+.  .               .+|..+..+ ++|.|.+++.+|+|.|.|.+
T Consensus         1 g~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           1 GILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             CccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence            468999999999865 4556999998654321  1               134444343 68999999999999999999


Q ss_pred             EcCCCCc-eeeEEEEE
Q psy12061         63 TNVHGMD-ESKGRLIV   77 (626)
Q Consensus        63 ~n~~g~~-~~~~~l~v   77 (626)
                      .+..|.. .....|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9887663 44566655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.78  E-value=5.6e-08  Score=75.24  Aligned_cols=76  Identities=28%  Similarity=0.477  Sum_probs=55.0

Q ss_pred             CCceEEEEeeeCCCC------CCeeEEEeCC-----E-Ec--cCC----------CcEEEc----cCCcEEEccCCCCCC
Q psy12061          4 EGGNVTIFCNPEAAP------KPKFVWKKDG-----N-II--GSG----------GRRKIF----ENGNLLISPVSRDDS   55 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p------~p~i~W~~~~-----~-~i--~~~----------~~~~~~----~~g~L~i~~v~~~d~   55 (626)
                      .|++|+|.|.....+      .+.|.|+|..     . .+  ..+          .|....    .+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            499999999997654      4599999962     1 11  011          122111    123799999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEe
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      |.|+|.+.+..+.......|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999877777788888753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG4802|consensus

Probab=98.78  E-value=3.9e-07  Score=82.34  Aligned_cols=140  Identities=24%  Similarity=0.310  Sum_probs=93.0

Q ss_pred             CccceEEEeCCccCceEEEEEEEeeCCCC---CCCCccEEEeecCCCCCCCCceEEEeeeC---CCEEEEEEeecCCCCC
Q psy12061        449 TTRNWALIVGLQPDTKYYVKVMAYNNAGE---GPESERYLERTYRKAPQKPPSAVHIKGIN---PTTVHVTWRYVSPSFE  522 (626)
Q Consensus       449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~---s~~s~~~~~~t~~~~p~~~p~~l~~~~~~---~~~~~l~W~~~~~~~~  522 (626)
                      ...+.+.+.++.||.-|.|+|.|+|..|.   +.+|........+.+|+ +|.++++..+.   .-...|-|.   |...
T Consensus       206 ~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~---P~~s  281 (516)
T KOG4802|consen  206 MEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWC---PSKS  281 (516)
T ss_pred             CCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeC---CCCC
Confidence            33345889999999999999999998764   45666665555555555 78888866552   223556676   3446


Q ss_pred             CCceeeEEEEEEEecc-CCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCC-cEEEeec
Q psy12061        523 EEPIIGYKVRVWEVDQ-DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP-AITFQMG  592 (626)
Q Consensus       523 ~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~-~~~~~~~  592 (626)
                      +-+|..|.|.|.-.-. ....+..+-.....+..+.|.+|.|+..|.+.|+|..--|.+..-+. -..|.++
T Consensus       282 dlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rLksek~~~F~~T  353 (516)
T KOG4802|consen  282 DLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRLKSEKWMLFNTT  353 (516)
T ss_pred             CCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcccccceEEEEeec
Confidence            7889999998643331 11111222222223345559999999999999999999998774332 2455544

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.76  E-value=7.3e-08  Score=69.26  Aligned_cols=71  Identities=20%  Similarity=0.306  Sum_probs=57.0

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .+.++..|+++.|.|.......   ++.|+++|..+..+       .++......|.|.+++.+|+|.|+|.+. +.|..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~~A---~v~W~~ng~~l~~~-------~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~   72 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSNLA---SPVWLFNGTPLNAQ-------FSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQ   72 (85)
T ss_pred             eEEEEecCCCEEEECCCCCCCc---cEEEEECCcccCCC-------cceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCe
Confidence            5678999999999999888743   67999999998643       4666667778899999999999999986 44544


Q ss_pred             EE
Q psy12061        169 ST  170 (626)
Q Consensus       169 ~~  170 (626)
                      ..
T Consensus        73 ~~   74 (85)
T cd05872          73 QL   74 (85)
T ss_pred             EE
Confidence            33

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.74  E-value=6.7e-08  Score=74.85  Aligned_cols=75  Identities=25%  Similarity=0.390  Sum_probs=56.0

Q ss_pred             CCceEEEEeeeCCCC------CCeeEEEeCCE------E--cc----------CCCcEEEcc----CCcEEEccCCCCCC
Q psy12061          4 EGGNVTIFCNPEAAP------KPKFVWKKDGN------I--IG----------SGGRRKIFE----NGNLLISPVSRDDS   55 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p------~p~i~W~~~~~------~--i~----------~~~~~~~~~----~g~L~i~~v~~~d~   55 (626)
                      +|++|+|.|.....|      ...|.|+|...      .  +.          ..+|..+..    +.+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            599999999987653      34799999531      1  11          124555532    23699999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEE
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      |.|+|.+.+..+.......|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988888777888774

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.72  E-value=3.3e-08  Score=73.69  Aligned_cols=64  Identities=16%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |.+|++|+|.|... .+...+.|+|+|..............+.+.|.+|+.+|+|.|+|...+..
T Consensus        13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~   76 (91)
T cd05751          13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGV   76 (91)
T ss_pred             cCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence            57899999999886 66779999999886432110001113469999999999999999999863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.72  E-value=9.4e-08  Score=69.93  Aligned_cols=71  Identities=28%  Similarity=0.411  Sum_probs=56.0

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC-ceE
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KIS  169 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g-~~~  169 (626)
                      ..+.+|++++|.|.+.+.|.+  .+.|++++..+...             ...|.|.++..+|+|.|+|.+.+..+ ..+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~-------------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s   73 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPP--QVQWYKNGSPINSS-------------QNGLFIPNVSPEDSGNYTCRASNGSGSNTS   73 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSS--EEEEEETTEEEEEE-------------SSEEEESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccce--eeeeeeeeeeeeee-------------eeeeeeeeeccccCEEEEEEEEeCCCCeEe
Confidence            568999999999999987764  67999999888643             12277888999999999999999654 455


Q ss_pred             EEEEEEE
Q psy12061        170 TKTTVIV  176 (626)
Q Consensus       170 ~~~~l~v  176 (626)
                      ..+.|.|
T Consensus        74 ~~~~v~V   80 (80)
T PF13895_consen   74 TSVNVTV   80 (80)
T ss_dssp             EEEEEEE
T ss_pred             eeEEeeC
Confidence            6666654

...

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.71  E-value=1.6e-07  Score=66.54  Aligned_cols=72  Identities=15%  Similarity=0.187  Sum_probs=49.8

Q ss_pred             eEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEcc-CC-----cEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12061          7 NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFE-NG-----NLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIVL   78 (626)
Q Consensus         7 ~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~-~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~   78 (626)
                      .+.|.|.+.|. |++.|.|+|++.++.......... .+     +|.|..-..+|...|+|.|.|..-. ......|.|.
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            37899999776 889999999999996542211111 22     4888766667777899999986532 3334566654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>smart00409 IG Immunoglobulin

Probab=98.71  E-value=3.4e-07  Score=68.00  Aligned_cols=79  Identities=23%  Similarity=0.474  Sum_probs=61.3

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccccCCccCCCeeEe--c--CCeEEEeecCCCCCEeEEEEEEe
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPNINI--D--GGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      ....+..|+++.|.|.+.+.+.  ..+.|+++ +..+...       .++..  .  ...|.|.++...|+|.|+|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAES-------GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCC-------CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            4567889999999999998844  46689998 7777522       12222  2  36899999999999999999998


Q ss_pred             CCCceEEEEEEEE
Q psy12061        164 TVGKISTKTTVIV  176 (626)
Q Consensus       164 ~~g~~~~~~~l~v  176 (626)
                      ..+.....+.|.|
T Consensus        73 ~~~~~~~~~~l~V   85 (86)
T smart00409       73 SSGSASSTTTLTV   85 (86)
T ss_pred             CCCeEEEEEEEEE
Confidence            8888777677665

>smart00410 IG_like Immunoglobulin like

Probab=98.71  E-value=3.4e-07  Score=68.00  Aligned_cols=79  Identities=23%  Similarity=0.474  Sum_probs=61.3

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccccCCccCCCeeEe--c--CCeEEEeecCCCCCEeEEEEEEe
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPNINI--D--GGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      ....+..|+++.|.|.+.+.+.  ..+.|+++ +..+...       .++..  .  ...|.|.++...|+|.|+|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLLAES-------GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEcCCC-------CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            4567889999999999998844  46689998 7777522       12222  2  36899999999999999999998


Q ss_pred             CCCceEEEEEEEE
Q psy12061        164 TVGKISTKTTVIV  176 (626)
Q Consensus       164 ~~g~~~~~~~l~v  176 (626)
                      ..+.....+.|.|
T Consensus        73 ~~~~~~~~~~l~V   85 (86)
T smart00410       73 SSGSASSTTTLTV   85 (86)
T ss_pred             CCCeEEEEEEEEE
Confidence            8888777677665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.70  E-value=9.1e-08  Score=73.24  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=50.8

Q ss_pred             CceEEEEeeeCCCCC---CeeEEEeCC--EEc---------c------CCCcEEEccC------CcEEEccCCCCCCEEE
Q psy12061          5 GGNVTIFCNPEAAPK---PKFVWKKDG--NII---------G------SGGRRKIFEN------GNLLISPVSRDDSGIY   58 (626)
Q Consensus         5 G~~~~l~C~~~g~p~---p~i~W~~~~--~~i---------~------~~~~~~~~~~------g~L~i~~v~~~d~G~Y   58 (626)
                      |++|+|.|...+...   ..|.|+|..  ..+         .      -.+|..+..+      .+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            889999999864322   278898844  111         1      0135554321      3699999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEE
Q psy12061         59 SCTATNVHGMDESKGRLIV   77 (626)
Q Consensus        59 ~C~a~n~~g~~~~~~~l~v   77 (626)
                      +|.+.|..+.......|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776555666655

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.69  E-value=2.5e-07  Score=68.02  Aligned_cols=87  Identities=18%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee---EecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI---NIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ..+.|.+|+++.|.|.+.+.|.|. .+.|.+++..+....- +....+.   .-..+.|++..+..+|+|.|+|.|.|..
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~-~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~   88 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSD-HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD   88 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCcccc-ceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence            457899999999999999999885 4689999887654321 1100110   1144689999999999999999999999


Q ss_pred             CceEEEEEEEEe
Q psy12061        166 GKISTKTTVIVE  177 (626)
Q Consensus       166 g~~~~~~~l~v~  177 (626)
                      +..+.+..|.|+
T Consensus        89 ~~~s~tF~l~v~  100 (101)
T cd05860          89 ASASVTFNVYVN  100 (101)
T ss_pred             CeEEEEEEEEEe
Confidence            999999988875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.68  E-value=1.3e-07  Score=73.23  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=49.9

Q ss_pred             CCCCceEEEEeeeCCC----CCCeeEE---------------EeCCEEcc-C----CCcEEEc-----cCCcEEEccCCC
Q psy12061          2 AGEGGNVTIFCNPEAA----PKPKFVW---------------KKDGNIIG-S----GGRRKIF-----ENGNLLISPVSR   52 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~----p~p~i~W---------------~~~~~~i~-~----~~~~~~~-----~~g~L~i~~v~~   52 (626)
                      |..|++++|.|.....    +..+|.|               |++|.... .    .+|....     .+.+|.|.+++.
T Consensus        10 a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~   89 (116)
T cd05879          10 GTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDY   89 (116)
T ss_pred             EEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCc
Confidence            5789999999999664    3459999               33444432 1    1466543     334799999999


Q ss_pred             CCCEEEEEEEEcCCCCc
Q psy12061         53 DDSGIYSCTATNVHGMD   69 (626)
Q Consensus        53 ~d~G~Y~C~a~n~~g~~   69 (626)
                      +|+|.|+|.+.|..+..
T Consensus        90 sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          90 TDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ccCEEEEEEEEcCCCcC
Confidence            99999999999876643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.67  E-value=3.2e-08  Score=68.55  Aligned_cols=59  Identities=27%  Similarity=0.476  Sum_probs=42.5

Q ss_pred             CCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC----eEEEeecCCCCCEeEEEEE
Q psy12061         96 HRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG----LLEITNASFADAGEYECVV  161 (626)
Q Consensus        96 g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~Y~C~a  161 (626)
                      |++++|.|.+ .+.+.  ..+.|.+++..+.....     ........    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~--~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPP--TTVTWSKNGQSLPEGST-----TNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSST--SEEEEEETTTTTSEEEE-----EEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCC--cEEEEEECCccccCcce-----eEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 34433  47799999887754321     11111222    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.67  E-value=6.7e-08  Score=75.51  Aligned_cols=66  Identities=27%  Similarity=0.378  Sum_probs=51.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCE---Ec-----------cCCCcEEEccC---C--cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN---II-----------GSGGRRKIFEN---G--NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~---~i-----------~~~~~~~~~~~---g--~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|.+.+.+.+.+.|+|...   +.           ...+|+.+..+   +  +|.|.+++.+|+|.|.|.+
T Consensus        10 ~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~   89 (109)
T cd04983          10 VQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL   89 (109)
T ss_pred             EcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence            6789999999999988888999998431   10           12356655432   2  6999999999999999999


Q ss_pred             EcCCC
Q psy12061         63 TNVHG   67 (626)
Q Consensus        63 ~n~~g   67 (626)
                      .+..+
T Consensus        90 ~~~~~   94 (109)
T cd04983          90 SESGG   94 (109)
T ss_pred             ecCCC
Confidence            97643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4802|consensus

Probab=98.65  E-value=8.3e-07  Score=80.31  Aligned_cols=209  Identities=20%  Similarity=0.212  Sum_probs=118.3

Q ss_pred             CCCEeEEEEEEeCCC-ceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEE----------EEeec
Q psy12061        152 ADAGEYECVVKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI----------IARTN  220 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g-~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v----------~~~~~  220 (626)
                      +-.|+=.|-. |.-| +-...-.+....++.|-..+.......++..+.|......  .+....+          .-+..
T Consensus       118 ECpevqKCcs-sgCgptcqvPktl~k~~~l~Pr~k~~y~r~~~g~~av~w~~~~~~--~v~~~~~~vr~~w~~g~hase~  194 (516)
T KOG4802|consen  118 ECPEVQKCCS-SGCGPTCQVPKTLYKNTQLPPRPKILYFRRSRGSHAVDWKIESSL--LVYYVHVEVRSHWGRGFHASEL  194 (516)
T ss_pred             cCccchhccc-CCCCCceeccccccccCCCCCcchhhhhhhccCceeeeeeecccc--ceeeeehhhhhhhccccccccc
Confidence            4455555533 3333 3344444544444433333444566777889999853221  1111111          11223


Q ss_pred             CCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccC-CCCCCCCCCceeEeecC
Q psy12061        221 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGG  299 (626)
Q Consensus       221 ~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~-~~~~p~~~p~~~~~~~~  299 (626)
                      +...|+.+....         ........ ++.||..|.|||.|+|..|.-..+.++..+.. ....++.+|.++....+
T Consensus       195 ~~thwQtv~~t~---------~e~~~~~t-~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v  264 (516)
T KOG4802|consen  195 GPTHWQTVEKTM---------EENTYIFT-DMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGV  264 (516)
T ss_pred             ccccceeeeecC---------CCceeeee-ecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeee
Confidence            446677765542         11133443 49999999999999999986666666555543 23334457777776433


Q ss_pred             ---CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        300 ---KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       300 ---~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                         +.-...|.|.|+   ..+-++..|.|.|...-...-..+.....-......+.|++|.|+..|.+.|.|....|.+.
T Consensus       265 ~~dG~~~~~v~w~P~---~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r  341 (516)
T KOG4802|consen  265 QFDGRYMLKVVWCPS---KSDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR  341 (516)
T ss_pred             eecceEEEEEEeCCC---CCCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence               223456788763   45578999999997543111011111100011112344899999999999999998887654

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.63  E-value=3e-07  Score=70.65  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=53.1

Q ss_pred             CCceEEEEeeeCCCC------------CCeeEEEeC--CE---Ecc-C----------CCcEEEcc------CCcEEEcc
Q psy12061          4 EGGNVTIFCNPEAAP------------KPKFVWKKD--GN---IIG-S----------GGRRKIFE------NGNLLISP   49 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p------------~p~i~W~~~--~~---~i~-~----------~~~~~~~~------~g~L~i~~   49 (626)
                      .|++|+|.|......            .+.|.|+|-  |.   .+. .          .+|..+..      +.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999996542            369999983  21   111 0          14655543      33799999


Q ss_pred             CCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061         50 VSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        50 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      ++.+|+|.|+|.+.++.........|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999665555555666653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.63  E-value=9.1e-08  Score=74.26  Aligned_cols=66  Identities=26%  Similarity=0.491  Sum_probs=50.2

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCE-----Ec------------cCCCcEEEccC---C--cEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGN-----II------------GSGGRRKIFEN---G--NLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~-----~i------------~~~~~~~~~~~---g--~L~i~~v~~~d~G~Y   58 (626)
                      |.+|++|+|.|.+.+. +...+.|+|...     .|            ...+|+.+..+   +  +|.|.+++.+|+|.|
T Consensus         3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y   82 (105)
T cd00099           3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY   82 (105)
T ss_pred             ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            6799999999999876 667999998432     11            11245554433   2  699999999999999


Q ss_pred             EEEEEcCCC
Q psy12061         59 SCTATNVHG   67 (626)
Q Consensus        59 ~C~a~n~~g   67 (626)
                      .|.+.+..+
T Consensus        83 ~C~v~~~~~   91 (105)
T cd00099          83 YCAVSLSGG   91 (105)
T ss_pred             EEEEecCCC
Confidence            999997765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.61  E-value=3.6e-07  Score=64.61  Aligned_cols=69  Identities=7%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .++|.|...+.-++ .+|.|+||++++........ .++.....+.|.|......|.+.|+|.|.|..+..
T Consensus         1 ~~~L~C~s~~skP~-a~i~W~k~~~~l~~~~~~~~-~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPA-ATLRWYRDRKELKGVISQQE-NGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCC-CeEEEEECCEECCCCccccc-CCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            37899998875433 36799999999965321111 12222245679999999999999999999988753

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.60  E-value=2.7e-08  Score=71.81  Aligned_cols=59  Identities=37%  Similarity=0.695  Sum_probs=42.4

Q ss_pred             ceEEEEeeeCCCC-CCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEc
Q psy12061          6 GNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         6 ~~~~l~C~~~g~p-~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      ..++|.|.+.+.| .+.+.|+..........+.....++.|.|.++..+|.|.|+|+|.|
T Consensus        16 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   16 GSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3499999999987 7799999111111111222233355799999999999999999987

...

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.59  E-value=4e-07  Score=70.35  Aligned_cols=75  Identities=24%  Similarity=0.378  Sum_probs=54.3

Q ss_pred             CCceEEEEeeeCCCC----------CCeeEEEeC--CEEcc--------------CCCcEEEcc------CCcEEEccCC
Q psy12061          4 EGGNVTIFCNPEAAP----------KPKFVWKKD--GNIIG--------------SGGRRKIFE------NGNLLISPVS   51 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p----------~p~i~W~~~--~~~i~--------------~~~~~~~~~------~g~L~i~~v~   51 (626)
                      .|++|+|.|.....+          ...|.|+|.  +..+.              -.+|..+..      +.+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999997654          257999994  22110              014555532      2369999999


Q ss_pred             CCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061         52 RDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        52 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      .+|+|.|.|.+............|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999876666777777774

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.59  E-value=2.6e-07  Score=70.46  Aligned_cols=72  Identities=24%  Similarity=0.375  Sum_probs=51.8

Q ss_pred             ceEEEEeeeCCCC---CCeeEEEeCCE----Ec-----------cC--CCcEEEcc----CCcEEEccCCCCCCEEEEEE
Q psy12061          6 GNVTIFCNPEAAP---KPKFVWKKDGN----II-----------GS--GGRRKIFE----NGNLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         6 ~~~~l~C~~~g~p---~p~i~W~~~~~----~i-----------~~--~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~   61 (626)
                      ++|+|.|.....+   ...|.|+|...    .+           ..  .+|..+..    +.+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999997754   34899999442    11           11  23443332    34799999999999999999


Q ss_pred             EEc-CCCCceeeEEEEE
Q psy12061         62 ATN-VHGMDESKGRLIV   77 (626)
Q Consensus        62 a~n-~~g~~~~~~~l~v   77 (626)
                      +.+ ..|...+...|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            975 5677777777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.56  E-value=2.4e-07  Score=72.22  Aligned_cols=64  Identities=20%  Similarity=0.397  Sum_probs=48.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EEcc----------------CCCcEEEccC----CcEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIG----------------SGGRRKIFEN----GNLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i~----------------~~~~~~~~~~----g~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++|+|.|.+.+ +.+.+.|||..  ..+.                ..+|+.+..+    -+|.|.+++.+|+|.|.
T Consensus        10 v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   88 (110)
T cd05899          10 KGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYL   88 (110)
T ss_pred             EcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEE
Confidence            679999999999988 77899999942  1110                1245544332    25999999999999999


Q ss_pred             EEEEcCC
Q psy12061         60 CTATNVH   66 (626)
Q Consensus        60 C~a~n~~   66 (626)
                      |.+.+..
T Consensus        89 Ca~~~~~   95 (110)
T cd05899          89 CASSLGG   95 (110)
T ss_pred             EEeeCCC
Confidence            9998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.56  E-value=1.1e-06  Score=66.28  Aligned_cols=83  Identities=29%  Similarity=0.564  Sum_probs=62.5

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec--CccceEEecCCCCCceEEEEEEE
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV--GNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      +|.++.+......++.|.|++  +...++.+.+|.|.+......    .......  .....+.+.+|.|++.|.|+|+|
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~--~~~~~~~~~~y~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a   76 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTP--PEDDGGPITGYVVEYREKGSG----DWKEVEVTPGSETSYTLTGLKPGTEYEFRVRA   76 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECC--CCCCCCcceeEEEEEeeCCCC----CCEEeeccCCcccEEEEccccCCCEEEEEEEE
Confidence            566788877788999999994  444446778999988765411    1122222  36788999999999999999999


Q ss_pred             EecCCCCCCCC
Q psy12061        574 FSNGGDGRMSS  584 (626)
Q Consensus       574 ~~~~G~g~~s~  584 (626)
                      .+..|.|.++.
T Consensus        77 ~~~~~~~~~s~   87 (93)
T cd00063          77 VNGGGESPPSE   87 (93)
T ss_pred             ECCCccCCCcc
Confidence            99999888775

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.56  E-value=2.6e-07  Score=71.49  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=47.1

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeCC--EE---cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~--~~---i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      |.+|++|+|.|.+.+.. ...+.|+|..  ..   |.         ...|+.+..++   +|.|.+++.+|+|.|.|.+.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   91 (106)
T cd04980          12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQY   91 (106)
T ss_pred             ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEe
Confidence            67999999999998765 5689999832  11   11         12345543332   59999999999999999997


Q ss_pred             cC
Q psy12061         64 NV   65 (626)
Q Consensus        64 n~   65 (626)
                      +.
T Consensus        92 ~~   93 (106)
T cd04980          92 GT   93 (106)
T ss_pred             CC
Confidence            64

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.53  E-value=6e-07  Score=68.23  Aligned_cols=64  Identities=22%  Similarity=0.297  Sum_probs=47.4

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC---EE--cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG---NI--IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~---~~--i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|.|.+.+.  ....+.|+|..   .+  |.         ..+|+.+..++   +|.|.+++.+|+|.|.|.+
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   82 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV   82 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence            7899999999999775  45689999822   21  10         12355554443   5999999999999999999


Q ss_pred             EcC
Q psy12061         63 TNV   65 (626)
Q Consensus        63 ~n~   65 (626)
                      .+.
T Consensus        83 ~~~   85 (98)
T cd04984          83 WDS   85 (98)
T ss_pred             ccC
Confidence            754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.52  E-value=6.5e-07  Score=65.12  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=44.2

Q ss_pred             eEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEc-cCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          7 NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF-ENG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         7 ~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~-~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      .+.|.|.+.|. |.++|+|+|+|.+|......... .+|      .|.+.....+|.+.|+|.|.|....
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            37899999776 88999999999998643322222 222      3555555566778999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.52  E-value=1.5e-06  Score=67.40  Aligned_cols=79  Identities=20%  Similarity=0.362  Sum_probs=53.5

Q ss_pred             CCceEEecCCcEEEEEEecccC--CcceeEEEee---------------CCEEeccccCCccCCCeeE------ecCCeE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEE--LLDVAYIWTH---------------NGVRIGNMDLNELETPNIN------IDGGLL  144 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p--~p~~~i~W~~---------------~~~~~~~~~~~~~~~~~~~------~~~~~l  144 (626)
                      +..+.+..|++++|.|......  .+.+++.|..               +|...... +. .-..|+.      ..+.+|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~-~~-~f~~Rv~f~g~~~~~daSI   82 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDD-VG-PFKERIEWVGNPSRKDGSI   82 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceeccc-cc-CccCceEEeCCCCcCeeEE
Confidence            5677899999999999997743  2456889933               22222100 00 0012433      245689


Q ss_pred             EEeecCCCCCEeEEEEEEeCCCce
Q psy12061        145 EITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .|.+++.+|.|.|+|.+.|.-+..
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCCcC
Confidence            999999999999999999876643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.51  E-value=8.8e-07  Score=68.59  Aligned_cols=84  Identities=20%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             cCCcEEEEEEecccC----CcceeEEEeeCCE----E---e-cccc---CCccCCCeeEec-----CCeEEEeecCCCCC
Q psy12061         95 AHRNLQLRCSAHTEE----LLDVAYIWTHNGV----R---I-GNMD---LNELETPNINID-----GGLLEITNASFADA  154 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p----~p~~~i~W~~~~~----~---~-~~~~---~~~~~~~~~~~~-----~~~l~i~~~~~~d~  154 (626)
                      .|++++|.|.....|    .....|.|+|...    .   + ....   ....-..|+...     ..+|+|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999988764    3345689998531    1   1 1000   000012344432     34899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |.|+|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999888888888764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.49  E-value=1.8e-06  Score=65.42  Aligned_cols=85  Identities=19%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCE-----Eeccc-------cCCccCCCeeEe-cCCeEEEeecCCCCCE
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIGNM-------DLNELETPNINI-DGGLLEITNASFADAG  155 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-----~~~~~-------~~~~~~~~~~~~-~~~~l~i~~~~~~d~g  155 (626)
                      ....+.+|+++.|.|...  |.....+.|+|...     .+...       .....-..|..+ .+++|.|.+++.+|+|
T Consensus         6 ~p~~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           6 VPPQVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             cCCcccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence            344678999999999654  44446789999632     11110       000011344443 5689999999999999


Q ss_pred             eEEEEEEeCCC-ceEEEEEEE
Q psy12061        156 EYECVVKSTVG-KISTKTTVI  175 (626)
Q Consensus       156 ~Y~C~a~n~~g-~~~~~~~l~  175 (626)
                      .|+|.+.+... ..+..+.|.
T Consensus        84 ~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          84 FYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEEeCCccEEEEEEEEE
Confidence            99999998774 445555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=98.49  E-value=7.9e-05  Score=67.09  Aligned_cols=124  Identities=20%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             ceEEEeCCccCceEEEEEEEeeCCCCCCCCccEE-EeecCC---CCCCCCceEEEeee----CCCEEEEEEeecCCCCCC
Q psy12061        452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYL-ERTYRK---APQKPPSAVHIKGI----NPTTVHVTWRYVSPSFEE  523 (626)
Q Consensus       452 ~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~-~~t~~~---~p~~~p~~l~~~~~----~~~~~~l~W~~~~~~~~~  523 (626)
                      .++.+.++.|+..|.+++.+.+.... ..+.-+. ..|...   .| ..|.+..+...    +.++++|.|.+  ..+..
T Consensus       128 ~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P-~LP~d~~Ik~f~~lrtC~SvTIAW~~--s~d~~  203 (300)
T PF10179_consen  128 RHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYP-QLPDDTSIKEFNKLRTCNSVTIAWLG--SPDRS  203 (300)
T ss_pred             EEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCC-CCCCCCceeEEcCCcccceEEEEEec--CCCCC
Confidence            45889999999999999988765432 2222222 333332   23 35777777554    46899999994  22222


Q ss_pred             CceeeEEEEEEEeccC--------C---cc------ccc-eee-----------ecCccceEEecCCCCCceEEEEEEEE
Q psy12061        524 EPIIGYKVRVWEVDQD--------M---SR------AND-TII-----------PVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       524 ~~i~~Y~i~~~~~~~~--------~---~~------~~~-~~~-----------~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                         ..|=|+.+.....        .   ..      ..+ ..-           ........+|.||+||+.|.|.|.+.
T Consensus       204 ---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~  280 (300)
T PF10179_consen  204 ---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVN  280 (300)
T ss_pred             ---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEe
Confidence               3577755544332        0   00      000 000           11122455799999999999999998


Q ss_pred             ecCCCCCC
Q psy12061        575 SNGGDGRM  582 (626)
Q Consensus       575 ~~~G~g~~  582 (626)
                      -..|.+-+
T Consensus       281 ~~~G~sl~  288 (300)
T PF10179_consen  281 GPSGQSLP  288 (300)
T ss_pred             cCCCceee
Confidence            87776543

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.47  E-value=5.5e-07  Score=66.82  Aligned_cols=68  Identities=15%  Similarity=0.241  Sum_probs=47.3

Q ss_pred             CCCCCceEEEEeeeCCC-CCCe--eEEEeCCEEccCCCcEE-----EccCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          1 YAGEGGNVTIFCNPEAA-PKPK--FVWKKDGNIIGSGGRRK-----IFENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~-p~p~--i~W~~~~~~i~~~~~~~-----~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      ++.+|+.++|.|.+.|. |.+.  |.|||++..|.......     .....+|.|..-..+|...|+|.|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            46899999999999775 7776  79999999996421110     001124777644444445899999987665

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.47  E-value=1.2e-06  Score=67.77  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             cCCcEEEEEEecccC----CcceeEEEeeCC-----E-Eec--cccC---CccCCCeeEe-----cCCeEEEeecCCCCC
Q psy12061         95 AHRNLQLRCSAHTEE----LLDVAYIWTHNG-----V-RIG--NMDL---NELETPNINI-----DGGLLEITNASFADA  154 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p----~p~~~i~W~~~~-----~-~~~--~~~~---~~~~~~~~~~-----~~~~l~i~~~~~~d~  154 (626)
                      .|++++|.|.....+    .....|.|+|..     . .+.  ....   ......|...     .+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999998764    224578999862     1 111  1100   0011122222     456899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |.|+|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.47  E-value=1.3e-06  Score=66.06  Aligned_cols=73  Identities=30%  Similarity=0.451  Sum_probs=51.0

Q ss_pred             CceEEEEeeeCCCCCC-eeEEEeCCE----Ecc---C----------CCcEEEcc----CCcEEEccCCCCCCEEEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKP-KFVWKKDGN----IIG---S----------GGRRKIFE----NGNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p-~i~W~~~~~----~i~---~----------~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |++|+|.|........ .|.|+|...    .|.   .          .+|..+..    +.+|.|.+|+.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            8999999997655333 799998421    110   0          13433322    236999999999999999998


Q ss_pred             Ec-CCCCceeeEEEEE
Q psy12061         63 TN-VHGMDESKGRLIV   77 (626)
Q Consensus        63 ~n-~~g~~~~~~~l~v   77 (626)
                      .. ..|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            74 5566777778876

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.47  E-value=1.9e-06  Score=63.74  Aligned_cols=74  Identities=14%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPNINI-----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      .+++++.+|++++|.|.+.+....  .+.|++-+..+-.. ........|+..     ..-.|+|.+++.+|+|.|+|.+
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~--~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDS--VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCcc--EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEE
Confidence            467899999999999999998654  35788766443210 000112234442     1226999999999999999998


Q ss_pred             Ee
Q psy12061        162 KS  163 (626)
Q Consensus       162 ~n  163 (626)
                      ..
T Consensus        82 ~t   83 (95)
T cd05881          82 YT   83 (95)
T ss_pred             Ec
Confidence            64

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.45  E-value=6.1e-07  Score=66.84  Aligned_cols=66  Identities=20%  Similarity=0.315  Sum_probs=48.8

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ...|..|++++|.|.....   ...+.|+|+|.......      .........|.|.+++.+|+|.|+|.+.+.
T Consensus        10 ~~vV~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~~~~------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          10 SSVVPLGKPVTLRCQGPYG---AVEYRLYREGSTFAVKK------PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCccCCCCcEEEEEecCCC---CCEEEEEECCCCccccc------cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4578899999999987532   34678999987644211      111124567999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.45  E-value=1.9e-06  Score=64.55  Aligned_cols=72  Identities=25%  Similarity=0.457  Sum_probs=51.8

Q ss_pred             ceEEEEeeeCCC-CCC---eeEEEeC--CE--Ec--cC-----------CCcEEEcc----CCcEEEccCCCCCCEEEEE
Q psy12061          6 GNVTIFCNPEAA-PKP---KFVWKKD--GN--II--GS-----------GGRRKIFE----NGNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         6 ~~~~l~C~~~g~-p~p---~i~W~~~--~~--~i--~~-----------~~~~~~~~----~g~L~i~~v~~~d~G~Y~C   60 (626)
                      .+|+|.|..... |..   .|.|.|.  +.  .+  -.           .+|.....    +.+|.|.+++.+|+|.|+|
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence            378999999743 222   6999983  11  11  01           14555442    3689999999999999999


Q ss_pred             EEEc-CCCCceeeEEEEE
Q psy12061         61 TATN-VHGMDESKGRLIV   77 (626)
Q Consensus        61 ~a~n-~~g~~~~~~~l~v   77 (626)
                      .+.+ ..|...+.+.|.|
T Consensus        81 ~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEeCCCCCeEEEEEEEE
Confidence            9999 6777777788877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.44  E-value=2.7e-06  Score=64.17  Aligned_cols=88  Identities=26%  Similarity=0.437  Sum_probs=63.3

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++.+......++.|+|+++....    +.+.+|.|.++........... ........+.+.+|.|++.|.|+|+|.
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~----~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~p~~~Y~~~v~a~   77 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTPPEDDG----GPITGYVVEYREKGSGDWKEVE-VTPGSETSYTLTGLKPGTEYEFRVRAV   77 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECCCCCCC----CcceeEEEEEeeCCCCCCEEee-ccCCcccEEEEccccCCCEEEEEEEEE
Confidence            56678887777899999999876432    3477899998776522222111 111355668999999999999999999


Q ss_pred             eCCCCCCCCccEE
Q psy12061        473 NNAGEGPESERYL  485 (626)
Q Consensus       473 ~~~g~s~~s~~~~  485 (626)
                      +..|.|.++....
T Consensus        78 ~~~~~~~~s~~~~   90 (93)
T cd00063          78 NGGGESPPSESVT   90 (93)
T ss_pred             CCCccCCCccccc
Confidence            9888887765333

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.43  E-value=2.4e-06  Score=63.31  Aligned_cols=72  Identities=24%  Similarity=0.366  Sum_probs=52.2

Q ss_pred             ceEEEEeeeCCCC-CCeeEEEeCC----EEcc-------------CCCcEEEc----cCCcEEEccCCCCCCEEEEEEEE
Q psy12061          6 GNVTIFCNPEAAP-KPKFVWKKDG----NIIG-------------SGGRRKIF----ENGNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         6 ~~~~l~C~~~g~p-~p~i~W~~~~----~~i~-------------~~~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      ++|+|.|.....+ ...|+|.|-.    ..|.             -.+|..+.    .+.+|.|.+|+.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4799999997543 3499999832    2221             01455552    35589999999999999999975


Q ss_pred             -cCCCCceeeEEEEE
Q psy12061         64 -NVHGMDESKGRLIV   77 (626)
Q Consensus        64 -n~~g~~~~~~~l~v   77 (626)
                       ...|...++..|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             56688888888877

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.43  E-value=5.9e-07  Score=70.93  Aligned_cols=64  Identities=20%  Similarity=0.375  Sum_probs=48.3

Q ss_pred             CCCCceEEEEeeeCC--CCCCeeEEEeC--CEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEA--APKPKFVWKKD--GNII------G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g--~p~p~i~W~~~--~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +.+|++|+|.|.+.+  .+.+.+.|+|.  |...      .           ..+|+.+..++     +|.|.+++.+|+
T Consensus        10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   89 (116)
T cd04982          10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDS   89 (116)
T ss_pred             eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHC
Confidence            578999999999987  67789999993  2211      0           13566554332     599999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      |.|.|.+...
T Consensus        90 g~Y~C~~~~~   99 (116)
T cd04982          90 ATYYCAYWES   99 (116)
T ss_pred             EEEEEEEecC
Confidence            9999999743

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.41  E-value=6.5e-07  Score=67.87  Aligned_cols=64  Identities=28%  Similarity=0.491  Sum_probs=48.9

Q ss_pred             CCceEEEEeeeCCC-CC-CeeEEEeCCEEccCCCc---EEEccCC------cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          4 EGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGR---RKIFENG------NLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~---~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      .|+.++|.|.+.|. |. ++|+|+|||..+.....   .....+|      .|.|.....+|.|.|+|.|.+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            58999999999998 64 59999999999975542   2222334      366666666799999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.39  E-value=1.6e-06  Score=65.80  Aligned_cols=72  Identities=24%  Similarity=0.458  Sum_probs=50.7

Q ss_pred             ceEEEEeeeCCCC---CCeeEEEeC--C-E--Ecc-----------C--CCcEEEcc-----CCcEEEccCCCCCCEEEE
Q psy12061          6 GNVTIFCNPEAAP---KPKFVWKKD--G-N--IIG-----------S--GGRRKIFE-----NGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         6 ~~~~l~C~~~g~p---~p~i~W~~~--~-~--~i~-----------~--~~~~~~~~-----~g~L~i~~v~~~d~G~Y~   59 (626)
                      .+|+|.|.....+   ...|.|+|.  + .  .+.           .  .+|..+..     +.+|.|.+|+.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3799999996544   338999992  2 1  110           0  14555542     347999999999999999


Q ss_pred             EEEEc-CCCCceeeEEEEE
Q psy12061         60 CTATN-VHGMDESKGRLIV   77 (626)
Q Consensus        60 C~a~n-~~g~~~~~~~l~v   77 (626)
                      |.+.+ ..|...+.+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            99997 5666666677766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.39  E-value=4.1e-06  Score=64.02  Aligned_cols=81  Identities=15%  Similarity=0.150  Sum_probs=52.8

Q ss_pred             CCcEEEEEEecccCC-cceeEEEeeCCE--Eecc--cc--C----CccCCCeeEe-------cCCeEEEeecCCCCCEeE
Q psy12061         96 HRNLQLRCSAHTEEL-LDVAYIWTHNGV--RIGN--MD--L----NELETPNINI-------DGGLLEITNASFADAGEY  157 (626)
Q Consensus        96 g~~~~l~C~~~~~p~-p~~~i~W~~~~~--~~~~--~~--~----~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y  157 (626)
                      |++++|.|....... ....+.|+|...  .+..  ..  .    ...-..|+..       ...+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            789999999864322 224678987541  1110  00  0    0001134433       235799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEE
Q psy12061        158 ECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v  176 (626)
                      +|.+.|..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998887777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.38  E-value=1.3e-06  Score=68.32  Aligned_cols=67  Identities=22%  Similarity=0.421  Sum_probs=45.9

Q ss_pred             CCCCceEEEEeeeCCCC----CCeeEEEe----CCEE--c---c------CC----CcEEEcc-----CCcEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP----KPKFVWKK----DGNI--I---G------SG----GRRKIFE-----NGNLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p----~p~i~W~~----~~~~--i---~------~~----~~~~~~~-----~g~L~i~~v~~~   53 (626)
                      |.+|++++|.|.....+    ...|.|++    ++.+  +   .      ..    +|..+..     +.+|.|.+++.+
T Consensus        10 ~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~   89 (115)
T cd05880          10 AVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPT   89 (115)
T ss_pred             EEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChh
Confidence            57899999999986543    23699985    1221  1   0      11    2333221     236999999999


Q ss_pred             CCEEEEEEEEcCCCC
Q psy12061         54 DSGIYSCTATNVHGM   68 (626)
Q Consensus        54 d~G~Y~C~a~n~~g~   68 (626)
                      |+|.|.|.+.|..+.
T Consensus        90 D~G~Y~C~v~~~~~~  104 (115)
T cd05880          90 DNGTYTCQVKNPPDV  104 (115)
T ss_pred             hCEEEEEEEEeCCCC
Confidence            999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.38  E-value=4.3e-06  Score=64.67  Aligned_cols=84  Identities=18%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             cCCcEEEEEEecccCCc--------ceeEEEeeC--CEEec----ccc---CCccCCCeeEe-------cCCeEEEeecC
Q psy12061         95 AHRNLQLRCSAHTEELL--------DVAYIWTHN--GVRIG----NMD---LNELETPNINI-------DGGLLEITNAS  150 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p~p--------~~~i~W~~~--~~~~~----~~~---~~~~~~~~~~~-------~~~~l~i~~~~  150 (626)
                      .|++++|.|.....+.+        ...|.|+|.  +....    ...   +...-.+|+..       +...|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            38999999999876532        357899984  22211    000   00111234443       34579999999


Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      .+|+|.|.|.+.......+..+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777788888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.36  E-value=2.7e-06  Score=65.09  Aligned_cols=74  Identities=24%  Similarity=0.361  Sum_probs=52.7

Q ss_pred             CceEEEEeeeCCCC-------CCeeEEEeC-----CEEc----cC----------CCcEEEcc------CCcEEEccCCC
Q psy12061          5 GGNVTIFCNPEAAP-------KPKFVWKKD-----GNII----GS----------GGRRKIFE------NGNLLISPVSR   52 (626)
Q Consensus         5 G~~~~l~C~~~g~p-------~p~i~W~~~-----~~~i----~~----------~~~~~~~~------~g~L~i~~v~~   52 (626)
                      |++|+|.|...-.|       .+.|.|.|-     ...+    ..          .+|..+..      +-+|.|.+|+.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            88999999965322       369999984     1111    01          24655543      22699999999


Q ss_pred             CCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061         53 DDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        53 ~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +|+|.|+|.+............|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999876556666777764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.36  E-value=2.3e-06  Score=62.53  Aligned_cols=69  Identities=14%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             cEEEEEEecc-cCCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         98 NLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        98 ~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .++|.|.+.+ .|.+  .++|+|+|..+........  ..+......+.|.|......|.|.|+|.|.|.....
T Consensus         1 ~~~L~C~v~g~~P~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAA--EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCC--EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3689999988 4654  6799999998864321000  011111123467788877788999999999876543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.36  E-value=6.8e-07  Score=64.33  Aligned_cols=68  Identities=21%  Similarity=0.432  Sum_probs=45.4

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      +.......+. ++|.|.+.+.+. ...+.|+.........      ........+.|.|.++..+|.|.|+|.|.|
T Consensus         8 ~~~~~~~~~~-~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    8 PPPVVTSGGS-VTLTCSAEGGPP-PPSISWYDSNPSFNSN------SRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             STSEEETTEE-EEEEEEESSEES-SEEEEEETEEEEEEEE------EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCCcEeecee-EEEEEEEccccC-CeEEEEEecCCceeee------eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3333333344 999999999884 4578999111111110      122333667899999999999999999987

...

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.35  E-value=6.2e-06  Score=63.07  Aligned_cols=74  Identities=23%  Similarity=0.398  Sum_probs=53.9

Q ss_pred             CceEEEEeeeCCCC-----------CCeeEEEeC-----CE-----Ec--cC----------CCcEEEcc------CCcE
Q psy12061          5 GGNVTIFCNPEAAP-----------KPKFVWKKD-----GN-----II--GS----------GGRRKIFE------NGNL   45 (626)
Q Consensus         5 G~~~~l~C~~~g~p-----------~p~i~W~~~-----~~-----~i--~~----------~~~~~~~~------~g~L   45 (626)
                      |++++|.|...-.|           ...|.|.|-     |.     .+  ..          .+|..+..      +-+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78999999997443           238999983     11     11  01          24555542      2379


Q ss_pred             EEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061         46 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        46 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      .|.+++.+|+|.|+|.+.+..........|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999887777777787774

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.35  E-value=4.3e-06  Score=60.71  Aligned_cols=62  Identities=13%  Similarity=0.247  Sum_probs=44.0

Q ss_pred             eEEEEeeeCCC-CCCeeEEEeCCEEccCCCc-EEEccC-C------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          7 NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGR-RKIFEN-G------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         7 ~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~-~~~~~~-g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      .+.|.|.+.|. |.++|+|+|||.+|..... .....+ +      .|.|.....+|...|+|.|.+....
T Consensus         1 ~~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           1 KAKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             CEEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            37899999886 9999999999999865322 111222 2      2555555566778999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.33  E-value=8.4e-06  Score=59.71  Aligned_cols=80  Identities=23%  Similarity=0.434  Sum_probs=52.8

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.++.+.....+++.|+|++  +...+.  .+|.+.|......................+.+.+|.|++.|.|+|+|.+
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~--~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~   78 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEP--PPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN   78 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECC--CCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence            344577777777799999994  332222  5787776654432211122222223357899999999999999999999


Q ss_pred             cCCC
Q psy12061        576 NGGD  579 (626)
Q Consensus       576 ~~G~  579 (626)
                      ..|.
T Consensus        79 ~~g~   82 (83)
T smart00060       79 GAGE   82 (83)
T ss_pred             ccCC
Confidence            8664

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.33  E-value=8e-06  Score=62.80  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             cCCcEEEEEEecccCCc----------ceeEEEeeC--CEE---eccc-c-C--CccCCCeeEe-------cCCeEEEee
Q psy12061         95 AHRNLQLRCSAHTEELL----------DVAYIWTHN--GVR---IGNM-D-L--NELETPNINI-------DGGLLEITN  148 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p~p----------~~~i~W~~~--~~~---~~~~-~-~--~~~~~~~~~~-------~~~~l~i~~  148 (626)
                      .|++++|.|.......+          ...|.|+|-  |..   +... . .  ...-..|+.+       .+..|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            48999999999865321          357899984  211   1100 0 0  0011125544       467999999


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        149 ASFADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      ++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998877888888888764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.33  E-value=3.8e-06  Score=62.42  Aligned_cols=80  Identities=10%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             CCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         87 LPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .+....+.+|+.++|.|.+.+ .|.+.++|.|+|++..+........ ..........|.+..-...|.-.|+|.|.+..
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~-~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l   85 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN-TKSPVNAPATITITVDREDHGANFSCETELDL   85 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc-cCCCceeEEEEEEecchhhCCcEEEEEEEecc
Confidence            344556789999999999998 5666667899999999976432111 01111123456666444444449999999876


Q ss_pred             Cc
Q psy12061        166 GK  167 (626)
Q Consensus       166 g~  167 (626)
                      +.
T Consensus        86 ~~   87 (100)
T cd05755          86 RP   87 (100)
T ss_pred             Cc
Confidence            54

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.33  E-value=2.8e-06  Score=66.30  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE---Ee---cccc-CCccCCCeeEe------cCCeEEEeecCCC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV---RI---GNMD-LNELETPNINI------DGGLLEITNASFA  152 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~---~~---~~~~-~~~~~~~~~~~------~~~~l~i~~~~~~  152 (626)
                      ++|..+.+.+|++++|.|.+.+.+.+  .+.|++...   +.   .... .......|+.+      ....|+|.+++.+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   80 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS   80 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCcc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence            46778899999999999999987443  568987431   11   0000 00012244433      2358999999999


Q ss_pred             CCEeEEEEEEeCC
Q psy12061        153 DAGEYECVVKSTV  165 (626)
Q Consensus       153 d~g~Y~C~a~n~~  165 (626)
                      |+|.|.|.+.+..
T Consensus        81 DsG~Y~C~~~~~~   93 (109)
T cd04983          81 DSAVYFCALSESG   93 (109)
T ss_pred             HCEEEEEEEecCC
Confidence            9999999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.30  E-value=3.7e-06  Score=60.86  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             EEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEc--cCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          8 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF--ENG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         8 ~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~--~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      ++|.|.+.|. |.++|+|+|||.++.........  .+|      .|.|..-..+|...|+|.|.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999884 77899999999998643322222  122      4777655567778999999987544

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.30  E-value=3.3e-06  Score=66.39  Aligned_cols=67  Identities=21%  Similarity=0.405  Sum_probs=46.1

Q ss_pred             CCCCceEEEEeeeCCCC----CCeeEEEeCCE------Ec---------c-CC----CcEEEccC-----CcEEEccCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP----KPKFVWKKDGN------II---------G-SG----GRRKIFEN-----GNLLISPVSR   52 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p----~p~i~W~~~~~------~i---------~-~~----~~~~~~~~-----g~L~i~~v~~   52 (626)
                      |.+|++|+|.|......    ...|.|++...      .+         . ..    +|..+..+     .+|.|.+++.
T Consensus        10 v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   89 (116)
T cd05715          10 AVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQF   89 (116)
T ss_pred             EEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCc
Confidence            57899999999986542    24699986211      11         0 11    33333322     3699999999


Q ss_pred             CCCEEEEEEEEcCCCC
Q psy12061         53 DDSGIYSCTATNVHGM   68 (626)
Q Consensus        53 ~d~G~Y~C~a~n~~g~   68 (626)
                      +|+|.|.|.+.|....
T Consensus        90 ~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          90 TDNGTYTCDVKNPPDI  105 (116)
T ss_pred             ccCEEEEEEEEeCCCC
Confidence            9999999999987554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.30  E-value=4.5e-06  Score=68.14  Aligned_cols=78  Identities=26%  Similarity=0.396  Sum_probs=57.2

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEcc----------C--CCcEEEc----cCCcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIG----------S--GGRRKIF----ENGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~----------~--~~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|... +...+.|.|+|....+.          .  .+|..++    .+.+|.|.+|+.+|+|.|.|...-
T Consensus        27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~t  106 (189)
T PHA02987         27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNT  106 (189)
T ss_pred             EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEe
Confidence            68999999999984 65677999999644321          1  1455542    234699999999999999998863


Q ss_pred             -CCC-CceeeEEEEEEe
Q psy12061         65 -VHG-MDESKGRLIVLH   79 (626)
Q Consensus        65 -~~g-~~~~~~~l~v~~   79 (626)
                       ..| .....+.|.|..
T Consensus       107 fp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        107 LLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             cCCCCCceeEEEEEEEc
Confidence             345 566677888854

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=98.25  E-value=0.00017  Score=64.68  Aligned_cols=250  Identities=16%  Similarity=0.055  Sum_probs=136.4

Q ss_pred             CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCc
Q psy12061        300 KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE  379 (626)
Q Consensus       300 ~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~  379 (626)
                      .+..+.+.|.+.    ..-+...|.|+....+.. +......  .+.-...+.-.+|.++..|.++|.+.+..+.-..+.
T Consensus        82 ~~~~~~~~w~~~----~d~~~~~Y~i~~~~gD~~-f~r~~~~--~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf  154 (343)
T COG3401          82 RPKSVKVFWSPH----PDVSVGKYIIQRQNGDGK-FLRTGLV--KNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSF  154 (343)
T ss_pred             Ccceeeeccccc----CCCCCCeEEEEEecCchh-hhhhhHH--HhccchhheecccccccceeeeEEeecccccceeee
Confidence            356799999983    234567799988765533 4322211  121222333457889999999999998776433332


Q ss_pred             cEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCC
Q psy12061        380 VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGL  459 (626)
Q Consensus       380 ~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  459 (626)
                      ...--+....|. .-.++++.....+.+.|+|..+..        ...|+|+-.. ...+..........+.......+|
T Consensus       155 ~gVE~~~~~~P~-ei~~~~~~~d~~~~i~ls~dg~~~--------~~yy~IY~~~-~g~e~~~~ia~t~~n~y~d~~egl  224 (343)
T COG3401         155 TGVEATPKAEPK-EITNVRVSFDLGNNIELSEDGSEA--------EDYYRIYASD-SGNEEYGFIAQTTENSYYDVKEGL  224 (343)
T ss_pred             eeeecccccCCc-eeeeeeeecCCCCcceeeccCccc--------cceEEEeccC-Cccccccceeeccccchhhhhhcc
Confidence            222222233333 333455566677889999987653        2267876432 222222222222222222223343


Q ss_pred             ccCceEEEEEEEeeCCC-CCCCCccEEE-eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEec
Q psy12061        460 QPDTKYYVKVMAYNNAG-EGPESERYLE-RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD  537 (626)
Q Consensus       460 ~p~t~Y~v~V~a~~~~g-~s~~s~~~~~-~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~  537 (626)
                        |..|...|.+.+..| ++..+..... .|... +. .|... -.....+.+.|.|++.+   . -....|.++ +-.+
T Consensus       225 --ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~-~e-~pt~~-g~t~~~s~i~V~~E~~~---~-~~av~ytvy-r~~~  294 (343)
T COG3401         225 --GAVEYYKVTTVDNTGFESDLPNEPTVGETGGR-YE-VPTIP-GETTEASFIGVAAEQNQ---L-RQAVTYTVY-RVED  294 (343)
T ss_pred             --CceeEEEEEEEcCCcceeccCCccccccccCC-cc-cccCC-CceeeeeeeeEEecccc---c-ceeeEEeee-eccC
Confidence              678888888887544 5666654433 33332 22 11111 11123345668887311   1 233456663 2222


Q ss_pred             cCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCC
Q psy12061        538 QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGR  581 (626)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~  581 (626)
                      +.     ......-..+...+..+.++..|.+.|.+.+.+|.+.
T Consensus       295 g~-----~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~  333 (343)
T COG3401         295 GT-----PTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS  333 (343)
T ss_pred             CC-----cceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence            21     1112222445677888999999999999999998654

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.25  E-value=3.6e-06  Score=62.97  Aligned_cols=62  Identities=21%  Similarity=0.388  Sum_probs=44.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|.... +.-.+.|+|+|.............   ...+.|.+++.+|+|.|+|....
T Consensus        12 V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          12 VPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             cCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            568999999998865 455899999887532110000000   11589999999999999999853

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.23  E-value=4.1e-06  Score=65.28  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EEecc------ccCC---ccCCCeeEe-----cCCeEEEeec
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VRIGN------MDLN---ELETPNINI-----DGGLLEITNA  149 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~~~~------~~~~---~~~~~~~~~-----~~~~l~i~~~  149 (626)
                      +.|..+.+.+|++++|.|.+.+ +.+  .+.|+|..  .....      ....   .....++..     ....|.|.++
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~   79 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA   79 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence            5678899999999999999988 443  56899843  21110      0000   011233332     2357999999


Q ss_pred             CCCCCEeEEEEEEeCC
Q psy12061        150 SFADAGEYECVVKSTV  165 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~  165 (626)
                      +.+|+|.|.|.+.+..
T Consensus        80 ~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          80 EPEDSAVYLCASSLGG   95 (110)
T ss_pred             ChhhCEEEEEEeeCCC
Confidence            9999999999998654

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.23  E-value=4.1e-06  Score=63.69  Aligned_cols=65  Identities=28%  Similarity=0.481  Sum_probs=47.8

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCE-----Ec--------cCCCcEEEccC---C--cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGN-----II--------GSGGRRKIFEN---G--NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~-----~i--------~~~~~~~~~~~---g--~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|.|.... .+...+.|+|...     .|        ...+|..+..+   +  +|.|.+++.+|+|.|.|.+
T Consensus         4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   83 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV   83 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence            578999999999875 3566899998432     11        12355655422   2  5999999999999999999


Q ss_pred             EcCC
Q psy12061         63 TNVH   66 (626)
Q Consensus        63 ~n~~   66 (626)
                      ....
T Consensus        84 ~~~~   87 (98)
T cd05716          84 GDDG   87 (98)
T ss_pred             ccCC
Confidence            7653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.22  E-value=5.9e-06  Score=62.11  Aligned_cols=78  Identities=22%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEecccc-----------CCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-----------LNELETPNINI-DGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      |++|+|.|.......  ..+.|+++........           ....-..|... .+++|.|.+++.+|+|.|+|.+..
T Consensus         1 G~~VtL~c~~~~~~~--~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENL--QEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCC--EEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEc
Confidence            789999998876443  4679998654322110           00011234443 558999999999999999999987


Q ss_pred             CCCc-eEEEEEEE
Q psy12061        164 TVGK-ISTKTTVI  175 (626)
Q Consensus       164 ~~g~-~~~~~~l~  175 (626)
                      ..|. ......|.
T Consensus        79 ~~~~~~~~~~~l~   91 (92)
T cd05741          79 TNGVTENAKFFLR   91 (92)
T ss_pred             CCCcEEEEEEEEE
Confidence            7653 34444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.21  E-value=2.3e-06  Score=67.65  Aligned_cols=64  Identities=28%  Similarity=0.506  Sum_probs=48.1

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCE-----Ecc--------------CCCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGN-----IIG--------------SGGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~-----~i~--------------~~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +.+|++|+|.|... ......+.|++...     .|.              ..+|..+..++     +|.|.+++.+|+|
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG   92 (114)
T PF07686_consen   13 VQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSG   92 (114)
T ss_dssp             EETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEE
T ss_pred             EecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCE
Confidence            56899999999998 55666999998222     111              12455544443     4999999999999


Q ss_pred             EEEEEEEcC
Q psy12061         57 IYSCTATNV   65 (626)
Q Consensus        57 ~Y~C~a~n~   65 (626)
                      .|.|.+...
T Consensus        93 ~Y~C~v~~~  101 (114)
T PF07686_consen   93 TYFCQVSTS  101 (114)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEEEC
Confidence            999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.21  E-value=1.8e-05  Score=61.86  Aligned_cols=81  Identities=14%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             CCCceEEecCCcEEEEEEecccCC--cceeEEEee----CCEE--ec--cccCCccC----CCeeEe------cCCeEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEEL--LDVAYIWTH----NGVR--IG--NMDLNELE----TPNINI------DGGLLEI  146 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~--p~~~i~W~~----~~~~--~~--~~~~~~~~----~~~~~~------~~~~l~i  146 (626)
                      .|..+.+.+|++++|.|.....+.  ..+.|.|++    ++.+  +-  ..+.....    ..|...      .+.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            367788999999999999875432  134679974    1221  10  00000001    122221      3457999


Q ss_pred             eecCCCCCEeEEEEEEeCCCc
Q psy12061        147 TNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .+++.+|+|.|+|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.17  E-value=1.8e-05  Score=58.65  Aligned_cols=79  Identities=22%  Similarity=0.391  Sum_probs=53.5

Q ss_pred             CcEEEEEEecccCCcceeEEEeeCC----EEecccc------CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         97 RNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMD------LNELETPNINI-----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        97 ~~~~l~C~~~~~p~p~~~i~W~~~~----~~~~~~~------~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      ++++|.|.....+ ....++|.|-.    ..+....      +...-..|+..     .+.+|.|.+++.+|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~-~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNE-TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCC-cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence            4789999988654 34578998742    1221000      00011134443     3679999999999999999998


Q ss_pred             Ee-CCCceEEEEEEEE
Q psy12061        162 KS-TVGKISTKTTVIV  176 (626)
Q Consensus       162 ~n-~~g~~~~~~~l~v  176 (626)
                      .+ ..|..+++..|.|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence            65 7899898888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.17  E-value=1.2e-05  Score=61.26  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             CcEEEEEEecccCC-cceeEEEeeCCEE----ec---cc---cCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061         97 RNLQLRCSAHTEEL-LDVAYIWTHNGVR----IG---NM---DLNELETPNINI-----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        97 ~~~~l~C~~~~~p~-p~~~i~W~~~~~~----~~---~~---~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      ++++|.|.....+. ....|.|+|....    +.   ..   .+......|...     .+..|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            57999999887652 2346899985431    10   00   000111233332     356899999999999999999


Q ss_pred             EEe-CCCceEEEEEEEE
Q psy12061        161 VKS-TVGKISTKTTVIV  176 (626)
Q Consensus       161 a~n-~~g~~~~~~~l~v  176 (626)
                      +.+ ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6788888888776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.16  E-value=9e-06  Score=61.32  Aligned_cols=82  Identities=17%  Similarity=0.168  Sum_probs=53.8

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC----Cc------cCCCeeEe--cCCeEEEeecCCCCCEeEEEEE
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL----NE------LETPNINI--DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~----~~------~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      ..|++|+|.|..... .....+.|++....+.....    ..      .-..|...  .+.+|.|.+++.+|+|.|+|.+
T Consensus         2 ~~G~sVtL~c~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDG-TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCC-cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence            469999999987651 22346799987543321110    00      00124443  3478999999999999999999


Q ss_pred             EeCCCce-EEEEEEEE
Q psy12061        162 KSTVGKI-STKTTVIV  176 (626)
Q Consensus       162 ~n~~g~~-~~~~~l~v  176 (626)
                      .+..|.. .....|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9877654 55556655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.16  E-value=7.4e-06  Score=62.73  Aligned_cols=63  Identities=17%  Similarity=0.330  Sum_probs=44.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--C--EE---c---cC------------CCcEEEccCC---cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--G--NI---I---GS------------GGRRKIFENG---NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~--~~---i---~~------------~~~~~~~~~g---~L~i~~v~~~d~G   56 (626)
                      |.+|++|+|.|.+.+.-...+.|+|.  |  ..   |   ..            ..|+.+..++   +|.|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            67999999999986654567999982  2  11   1   11            1233332222   5999999999999


Q ss_pred             EEEEEEEc
Q psy12061         57 IYSCTATN   64 (626)
Q Consensus        57 ~Y~C~a~n   64 (626)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.15  E-value=7.5e-06  Score=63.22  Aligned_cols=64  Identities=20%  Similarity=0.395  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeC--C---EEc------c-----------CCCcEEEc--cCC---cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKD--G---NII------G-----------SGGRRKIF--ENG---NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~--~---~~i------~-----------~~~~~~~~--~~g---~L~i~~v~~~   53 (626)
                      |.+|++|+|.|.+.+.. ...+.|+|-  |   ..+      .           ...|..+.  .++   .|.|.+++.+
T Consensus         3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   82 (107)
T cd07700           3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE   82 (107)
T ss_pred             EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence            67999999999997643 458999982  2   110      0           02344432  222   4999999999


Q ss_pred             CCEEEEEEEEcC
Q psy12061         54 DSGIYSCTATNV   65 (626)
Q Consensus        54 d~G~Y~C~a~n~   65 (626)
                      |+|.|.|...+.
T Consensus        83 Dsg~YyCa~~~~   94 (107)
T cd07700          83 DSGTYFCMTVGS   94 (107)
T ss_pred             HCEEEEEeEcCC
Confidence            999999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.15  E-value=2.1e-05  Score=61.84  Aligned_cols=80  Identities=20%  Similarity=0.358  Sum_probs=50.8

Q ss_pred             CCceEEecCCcEEEEEEecccCC--cceeEEEeeCCE------Eec-c-c-cC----CccCCCeeEe------cCCeEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEEL--LDVAYIWTHNGV------RIG-N-M-DL----NELETPNINI------DGGLLEI  146 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~--p~~~i~W~~~~~------~~~-~-~-~~----~~~~~~~~~~------~~~~l~i  146 (626)
                      |..+.+.+|++++|.|.......  ....+.|++...      .+- . . ..    ...-..|+..      .+.+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            67788999999999999875432  234679976211      110 0 0 00    0000122222      2357999


Q ss_pred             eecCCCCCEeEEEEEEeCCCc
Q psy12061        147 TNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .+++.+|+|.|.|.+.|..+.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999877553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.15  E-value=1.3e-05  Score=60.58  Aligned_cols=80  Identities=20%  Similarity=0.335  Sum_probs=52.0

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEE----ec---c-cc--CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVR----IG---N-MD--LNELETPNINI-----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~----~~---~-~~--~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |++++|.|........ ..+.|+|....    +.   . ..  +...-..|...     .+.+|+|.+++.+|+|.|+|.
T Consensus         1 G~~vtL~C~~~~~~~~-~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEV-LQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCee-EEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence            7899999997765432 36899984221    10   0 00  00001122222     456899999999999999999


Q ss_pred             EEe-CCCceEEEEEEEE
Q psy12061        161 VKS-TVGKISTKTTVIV  176 (626)
Q Consensus       161 a~n-~~g~~~~~~~l~v  176 (626)
                      ... ..|..+..+.|.|
T Consensus        80 ~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEeCCCCCeeeEEEEEE
Confidence            864 6777777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.15  E-value=1.6e-05  Score=56.19  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|+|.....+.  +.|.|...+....   +.......+|.+.++...|+|..+|.+.-..-.....+.+.|
T Consensus        11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~---~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V   85 (88)
T cd07694          11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK---QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV   85 (88)
T ss_pred             eecCCcEEEEEecCCCCCCCccEEEeCCCCccc---eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence            568999999999966444  4999998554322   111123447999999999999999999744333334444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.14  E-value=5.2e-05  Score=56.87  Aligned_cols=81  Identities=15%  Similarity=0.310  Sum_probs=52.7

Q ss_pred             CcEEEEEEecccCC--cceeEEEeeC--CEE--ecccc------CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEE
Q psy12061         97 RNLQLRCSAHTEEL--LDVAYIWTHN--GVR--IGNMD------LNELETPNINI-----DGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        97 ~~~~l~C~~~~~p~--p~~~i~W~~~--~~~--~~~~~------~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      .+++|.|.....++  ...+++|.+.  +..  +....      +...-..|+..     .+.+|.|.+++.+|.|.|+|
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence            36899999885322  1235789873  211  11000      00001133333     34799999999999999999


Q ss_pred             EEEe-CCCceEEEEEEEEe
Q psy12061        160 VVKS-TVGKISTKTTVIVE  177 (626)
Q Consensus       160 ~a~n-~~g~~~~~~~l~v~  177 (626)
                      .+.+ ..|..+..+.|.|.
T Consensus        81 ~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          81 EFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             EEEeCCCCCeEEEEEEEEC
Confidence            9999 78888888888873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.12  E-value=3e-05  Score=54.83  Aligned_cols=79  Identities=19%  Similarity=0.295  Sum_probs=57.1

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceE
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS  169 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~  169 (626)
                      +..+..|++++|.|.....+.|..+|+|...+...-.         ....+..+|.+..+...|+|..+|.+.-..-...
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~   78 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKT   78 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce---------eccCCccEEEeceeCcccCCEEEEEEEECceEEE
Confidence            4468899999999999776666567799975443221         1122667999999999999999999976544445


Q ss_pred             EEEEEEEe
Q psy12061        170 TKTTVIVE  177 (626)
Q Consensus       170 ~~~~l~v~  177 (626)
                      ..+.+.|.
T Consensus        79 ~~~~V~Vl   86 (88)
T cd07694          79 LKLDIKVL   86 (88)
T ss_pred             EEeeEEEE
Confidence            55555543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.12  E-value=1.7e-05  Score=61.22  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EE---eccc-c-CCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VR---IGNM-D-LNELETPNINI----DGGLLEITNASFAD  153 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~---~~~~-~-~~~~~~~~~~~----~~~~l~i~~~~~~d  153 (626)
                      .+.|..+.+.+|++++|.|.+.+... ...+.|+|..  ..   +... . .......++..    ....|.|.+++.+|
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~-~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVS-SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCC-CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            45677889999999999999876541 2356898742  21   1100 0 00001123333    22369999999999


Q ss_pred             CEeEEEEEEeC
Q psy12061        154 AGEYECVVKST  164 (626)
Q Consensus       154 ~g~Y~C~a~n~  164 (626)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.11  E-value=1.2e-05  Score=63.38  Aligned_cols=64  Identities=25%  Similarity=0.424  Sum_probs=47.0

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeC--CEE---c---------cCCCcEEEcc---CC--cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKD--GNI---I---------GSGGRRKIFE---NG--NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~--~~~---i---------~~~~~~~~~~---~g--~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++|+|.|...+. ....+.|+|.  +..   |         ...+|+.+..   ++  +|.|.+++.+|+|.|.|.
T Consensus        11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~   90 (116)
T cd07706          11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCA   90 (116)
T ss_pred             EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence            5789999999998764 4568999982  221   1         1135666542   12  599999999999999999


Q ss_pred             EEcC
Q psy12061         62 ATNV   65 (626)
Q Consensus        62 a~n~   65 (626)
                      +...
T Consensus        91 ~~~~   94 (116)
T cd07706          91 LSTL   94 (116)
T ss_pred             EECC
Confidence            9853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.10  E-value=3.5e-05  Score=57.20  Aligned_cols=65  Identities=20%  Similarity=0.383  Sum_probs=44.7

Q ss_pred             ceEEEEeeeCCC-CCCeeEEEeCCE----Ec-----------cC--CCcEEEcc----CCcEEEccCCCCCCEEEEEEEE
Q psy12061          6 GNVTIFCNPEAA-PKPKFVWKKDGN----II-----------GS--GGRRKIFE----NGNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         6 ~~~~l~C~~~g~-p~p~i~W~~~~~----~i-----------~~--~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      +.++|.|..... ....|.|.|-..    .|           ..  .+|.....    +.+|.|.+|+.+|+|.|+|...
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            578999998543 345899998421    11           11  14555542    4689999999999999999997


Q ss_pred             cC-CCCce
Q psy12061         64 NV-HGMDE   70 (626)
Q Consensus        64 n~-~g~~~   70 (626)
                      .- .|...
T Consensus        81 t~P~g~~~   88 (96)
T cd05889          81 TYPQGSWE   88 (96)
T ss_pred             eCCCCCeE
Confidence            54 34433

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=98.09  E-value=0.0015  Score=59.02  Aligned_cols=133  Identities=17%  Similarity=0.220  Sum_probs=79.6

Q ss_pred             eEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEE-EEcc---CCCCCCCCCceEEEe----eecceEEEEeeecccccc
Q psy12061        348 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT-IFSA---EDMPQVAPQGVFSRG----FNSTAINVTWNPIELIRE  419 (626)
Q Consensus       348 ~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~-~~t~---~~~p~~~p~~~~~~~----~~~~si~l~W~~~~~~~~  419 (626)
                      -..+.+.++.|+..|.+++.+.|.... ..+.-+. ..+.   ...|. -|.+..+..    .+.++++|.|.+..+.. 
T Consensus       127 ~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~-LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-  203 (300)
T PF10179_consen  127 LRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQ-LPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-  203 (300)
T ss_pred             eEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCC-CCCCCceeEEcCCcccceEEEEEecCCCCC-
Confidence            356789999999999999988765432 2122222 2222   22343 455665543    45689999999765421 


Q ss_pred             ccceeeEEEEEEEEecCCC----------------c---cc--eEE--EEecC----cc---ceEEEeCCccCceEEEEE
Q psy12061        420 NIRGRLIGHRIKYWKEDNP----------------E---ET--AVY--YLSRT----TR---NWALIVGLQPDTKYYVKV  469 (626)
Q Consensus       420 ~~~~~i~~Y~v~~~~~~~~----------------~---~~--~~~--~~~~~----~~---~~~~i~~L~p~t~Y~v~V  469 (626)
                            ..|.|..++....                .   ..  ...  .....    ..   ...+|.+|+||+.|.|.|
T Consensus       204 ------~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV  277 (300)
T PF10179_consen  204 ------IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDV  277 (300)
T ss_pred             ------ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEE
Confidence                  3688877654432                0   00  001  11111    11   234799999999999999


Q ss_pred             EEeeCCCCCCCCccEEEeec
Q psy12061        470 MAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       470 ~a~~~~g~s~~s~~~~~~t~  489 (626)
                      .+.-..|.+-.-....+.|.
T Consensus       278 ~~~~~~G~sl~Y~s~~VkTr  297 (300)
T PF10179_consen  278 YVNGPSGQSLPYRSKWVKTR  297 (300)
T ss_pred             EEecCCCceeecceEEEEec
Confidence            99887776544344445443

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.07  E-value=1.1e-05  Score=61.02  Aligned_cols=71  Identities=18%  Similarity=0.305  Sum_probs=49.2

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID------GGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ..|+.++|.|.+.+..++.++++|++||..+.......   ......      .+.|.|......|.+.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~---~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTT---PPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceecc---ccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            57899999999999854557889999999987543100   011112      234555555556999999999887653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>KOG3632|consensus

Probab=98.06  E-value=2.7e-05  Score=78.85  Aligned_cols=265  Identities=18%  Similarity=0.211  Sum_probs=159.0

Q ss_pred             CCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCc-ceeEEEEEEEE
Q psy12061        290 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQA  368 (626)
Q Consensus       290 ~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-p~~~Y~~~v~a  368 (626)
                      -|..+.+......++.|.|+++.....-.+...|.+.....-   .+.....   +  .+...++.|. .+..|.+.|.+
T Consensus       580 ypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~el---rq~l~~g---s--~tka~~E~ld~~a~s~~isvq~  651 (1335)
T KOG3632|consen  580 YPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMEL---RQTLYAG---S--LTKAMQESLDNSAHSGYISVQR  651 (1335)
T ss_pred             cccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhh---hhhcccc---c--chHHHHhhccccCCceeeehhh
Confidence            344555566667899999998544444455555655332111   0101110   0  0011122221 34567788889


Q ss_pred             ecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEec
Q psy12061        369 INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR  448 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~  448 (626)
                      ..+.|.+...... .-+...++. .|.++++.+++.++..++|-+-...-         -.+.|.......      ...
T Consensus       652 ltSrGsqd~lrc~-Llvgg~a~v-vpsqlrv~n~tqtSa~itwvp~nsn~---------~Hviyln~eE~~------ps~  714 (1335)
T KOG3632|consen  652 LTSRGSQDQLRCI-LLVGGAAPV-VPSQLRVWNATQTSAMITWVPFNSNF---------LHVIYLNAEEPR------PSV  714 (1335)
T ss_pred             hhccCCCCcceee-Eeccccccc-cchhhhhhhhhchhhheeeeecCCCc---------ceeeecCCccCC------Cch
Confidence            9888887655443 334455665 89999999999999999998764321         123332211111      122


Q ss_pred             CccceEEEeCCccCceEEEEEEEeeC-CCC--------CCCCccEEEeecCCCCCCCCceEEEeee-CCCEEEEEEeecC
Q psy12061        449 TTRNWALIVGLQPDTKYYVKVMAYNN-AGE--------GPESERYLERTYRKAPQKPPSAVHIKGI-NPTTVHVTWRYVS  518 (626)
Q Consensus       449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~-~g~--------s~~s~~~~~~t~~~~p~~~p~~l~~~~~-~~~~~~l~W~~~~  518 (626)
                      .....+++.+|.|++.|.++|-|.-. .+.        +.....+.|+|....|+.||.++.+..- .+..+.++|.|+.
T Consensus       715 a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPpt  794 (1335)
T KOG3632|consen  715 AEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPT  794 (1335)
T ss_pred             hhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCce
Confidence            33445889999999999999998765 211        2234567899999999999999987754 6788999999643


Q ss_pred             CCCC----CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCC-CceEEEEEEEEecCCCCCCCC
Q psy12061        519 PSFE----EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP-GKRYHMRVLAFSNGGDGRMSS  584 (626)
Q Consensus       519 ~~~~----~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~~~Y~~~V~a~~~~G~g~~s~  584 (626)
                      -+..    .-.+++|.|+..  +...   .+........+.+.+..|.- ...=.+.|+.....|++-.|-
T Consensus       795 ldsag~sngv~vtgYavyad--gqkv---~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsi  860 (1335)
T KOG3632|consen  795 LDSAGCSNGVAVTGYAVYAD--GQKV---EEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSI  860 (1335)
T ss_pred             eccccccCceeeeeeeeeeC--Ccee---eeeecccCCceEEEeeeehhhheecceeEEecccCccccccc
Confidence            3222    237899999532  2221   11222223334445555554 334467788877778766553

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.06  E-value=2.6e-05  Score=58.30  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=47.5

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      +....|..|++++|.|.....   ...+.|+|+|..............+   ....|.|.+++.+|+|.|+|...
T Consensus         7 ~p~~vV~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~---~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           7 HPSPVVPSGENVTLQCHSDIR---FDRFILYKEGRSKPVLHLYEKHHGG---FQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             cCCCccCCCCeEEEEEecCCC---CCEEEEEECCCCCCceecccccCCe---EEEEEEecCCCcccCEEEEEEEE
Confidence            346678899999999977652   2367999998764321100000011   23378999999999999999875

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.05  E-value=8.5e-05  Score=56.41  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=51.2

Q ss_pred             cEEEEEEecccCCc-ceeEEEeeC--CE-E--ec---c---ccCCccCCCeeEe------cCCeEEEeecCCCCCEeEEE
Q psy12061         98 NLQLRCSAHTEELL-DVAYIWTHN--GV-R--IG---N---MDLNELETPNINI------DGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        98 ~~~l~C~~~~~p~p-~~~i~W~~~--~~-~--~~---~---~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      +++|.|.....+.. ...+.|+|.  +. +  +.   .   ......-.+|...      .+.+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            68999998755422 347899983  21 1  11   0   0111110123222      35689999999999999999


Q ss_pred             EEEe-CCCceEEEEEEEE
Q psy12061        160 VVKS-TVGKISTKTTVIV  176 (626)
Q Consensus       160 ~a~n-~~g~~~~~~~l~v  176 (626)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 7777777777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.04  E-value=2.3e-05  Score=61.89  Aligned_cols=89  Identities=19%  Similarity=0.244  Sum_probs=55.6

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE-----Eec----cc---cCCccCCCeeE--ec----CCeEEEee
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIG----NM---DLNELETPNIN--ID----GGLLEITN  148 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-----~~~----~~---~~~~~~~~~~~--~~----~~~l~i~~  148 (626)
                      +|..+.+.+|++++|.|... .......+.|++...     .+.    ..   .....-..+..  ..    ...|.|.+
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             eCCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            46778899999999999999 223345678998322     111    00   00000112222  12    23799999


Q ss_pred             cCCCCCEeEEEEEEeC-CCceEEEEEEEE
Q psy12061        149 ASFADAGEYECVVKST-VGKISTKTTVIV  176 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~-~g~~~~~~~l~v  176 (626)
                      ++.+|+|.|.|.+... .......+.|.|
T Consensus        86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999999876 333445555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd00096 Ig Immunoglobulin domain

Probab=98.02  E-value=2.1e-05  Score=55.85  Aligned_cols=59  Identities=34%  Similarity=0.576  Sum_probs=45.7

Q ss_pred             EEEEeeeCCCCCCeeEEEeCCEEccCCCcE-------EEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          8 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-------KIFENGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         8 ~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~-------~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      +.|.|.+.+.+.+.+.|++++.........       .......|.|.+++.+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            479999999778899999998877543211       11222369999999999999999998775

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.01  E-value=5.5e-05  Score=57.95  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=56.0

Q ss_pred             CCcEEEEEEecccCC---------cceeEEEeeC-----CEEeccccC----------CccCCCeeEe-------cCCeE
Q psy12061         96 HRNLQLRCSAHTEEL---------LDVAYIWTHN-----GVRIGNMDL----------NELETPNINI-------DGGLL  144 (626)
Q Consensus        96 g~~~~l~C~~~~~p~---------p~~~i~W~~~-----~~~~~~~~~----------~~~~~~~~~~-------~~~~l  144 (626)
                      |.+++|.|...-.|.         ..+.|.|.+-     |.......+          ...-.+|..+       ++-+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            678999999885542         2356788763     111100000          0011234443       35689


Q ss_pred             EEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        145 EITNASFADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      .|.+++.+|+|.|+|.+.......+..+.|.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999998889999988864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.01  E-value=1.3e-05  Score=52.86  Aligned_cols=52  Identities=29%  Similarity=0.490  Sum_probs=37.2

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      +.|.+|+|+|...+.   .|.|++|+..+..++..       +.+.+-. +++|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~-------~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEK-------YLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCce-------EEeeccC-CCCceEEEEeCCC
Confidence            468999999987644   39999999766543222       3333444 8999999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.00  E-value=4.8e-05  Score=58.27  Aligned_cols=83  Identities=14%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CCcEEEEEEecccCC-----cceeEEEeeC-----CEEec----cccC---CccCCCeeEe-------cCCeEEEeecCC
Q psy12061         96 HRNLQLRCSAHTEEL-----LDVAYIWTHN-----GVRIG----NMDL---NELETPNINI-------DGGLLEITNASF  151 (626)
Q Consensus        96 g~~~~l~C~~~~~p~-----p~~~i~W~~~-----~~~~~----~~~~---~~~~~~~~~~-------~~~~l~i~~~~~  151 (626)
                      |.+++|.|...-.|.     ..+.|.|.|-     .....    ....   ...-.+|..+       ++-+|+|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            788999999764432     1356789874     11111    0000   0111234444       245899999999


Q ss_pred             CCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        152 ADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      +|+|.|+|.+.......+..+.|.|.+
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999998777778888888764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.98  E-value=8.4e-05  Score=60.92  Aligned_cols=89  Identities=20%  Similarity=0.346  Sum_probs=60.8

Q ss_pred             ceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccC-----CccCCCeeEe-----cCCeEEEeecCCCCCEeEE
Q psy12061         90 KITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDL-----NELETPNINI-----DGGLLEITNASFADAGEYE  158 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~  158 (626)
                      ...|.+|++++|.|... +...  ..++|+|....+..-..     ...-..|+..     .+..|.|.+++++|+|.|+
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~--~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNS--ILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCcc--ceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence            46789999999999975 4333  35799997443321110     0000135554     6789999999999999999


Q ss_pred             EEEEe-CCC-ceEEEEEEEEeCCC
Q psy12061        159 CVVKS-TVG-KISTKTTVIVEGPP  180 (626)
Q Consensus       159 C~a~n-~~g-~~~~~~~l~v~~~P  180 (626)
                      |...- ..| ..+..+-|.|...-
T Consensus       102 C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEecCCCCCceeEEEEEEEchh
Confidence            98764 455 67778888887543

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.97  E-value=7e-05  Score=53.28  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=49.5

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc-eEEEEEEEE
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV  176 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~-~~~~~~l~v  176 (626)
                      +.|.|.+.+..++ ..|.|+|++.++.................+.|.|..-...|...|+|.|.|..-. .+....|.|
T Consensus         2 ~~L~C~s~gSkP~-A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPA-ATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCC-CEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            6899999986543 4789999999997642100011122224467888776667777999999886532 344444444

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.97  E-value=6.6e-05  Score=57.69  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCeEEEeecCCCCC
Q psy12061         77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADA  154 (626)
Q Consensus        77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~  154 (626)
                      |..+|......+.......|+.++|.|.+.+--++.++++|+|||..+........  .+...-.-.+.|.+.. ...|.
T Consensus         2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~   80 (111)
T cd05772           2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDV   80 (111)
T ss_pred             cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccc
Confidence            34455554444445556789999999999996666789999999999864310000  0000000122333333 34444


Q ss_pred             E-eEEEEEEeCC
Q psy12061        155 G-EYECVVKSTV  165 (626)
Q Consensus       155 g-~Y~C~a~n~~  165 (626)
                      | .|+|.+....
T Consensus        81 ~~~ytC~V~H~~   92 (111)
T cd05772          81 HSQVTCEVQHRT   92 (111)
T ss_pred             cCceEEEEEeCC
Confidence            4 5999998764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.96  E-value=3.2e-05  Score=60.65  Aligned_cols=63  Identities=17%  Similarity=0.405  Sum_probs=44.8

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe---CCEE--c---c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK---DGNI--I---G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~---~~~~--i---~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|...+.-  ...+.|||   ++.+  |   .           ..+|+.+..+.     +|.|.+++.+|+
T Consensus         9 v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   88 (117)
T cd04981           9 VKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDT   88 (117)
T ss_pred             EcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHC
Confidence            57899999999986543  45799998   2222  1   0           02455543222     599999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      |.|.|.+..
T Consensus        89 a~YyCa~~~   97 (117)
T cd04981          89 AVYYCARGL   97 (117)
T ss_pred             EEEEEEEEc
Confidence            999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.95  E-value=5e-05  Score=59.97  Aligned_cols=64  Identities=27%  Similarity=0.329  Sum_probs=44.5

Q ss_pred             CCCCceEEEEeeeCCCC------CCeeEEEeCCE------Ec--c---------CCCcEEEcc---CC--cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP------KPKFVWKKDGN------II--G---------SGGRRKIFE---NG--NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p------~p~i~W~~~~~------~i--~---------~~~~~~~~~---~g--~L~i~~v~~~   53 (626)
                      |.+|++|+|.|.....+      ...+.|+|...      .+  .         ..+|+.+..   .+  +|.|.+++.+
T Consensus        11 ~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~   90 (119)
T cd05712          11 VQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPE   90 (119)
T ss_pred             EeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChh
Confidence            57899999999874221      24699998321      11  0         114655532   22  5999999999


Q ss_pred             CCEEEEEEEEcC
Q psy12061         54 DSGIYSCTATNV   65 (626)
Q Consensus        54 d~G~Y~C~a~n~   65 (626)
                      |+|.|.|.+...
T Consensus        91 Dsg~Y~C~~~~~  102 (119)
T cd05712          91 DSGKYFFRVELG  102 (119)
T ss_pred             hCeEEEEEEEcC
Confidence            999999998765

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.91  E-value=2.5e-05  Score=60.44  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             EEecCCcEEEEEEecccCCcceeEEEeeCCE--E---eccccC-----CccCCCeeEe------cCCeEEEeecCCCCCE
Q psy12061         92 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGV--R---IGNMDL-----NELETPNINI------DGGLLEITNASFADAG  155 (626)
Q Consensus        92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~--~---~~~~~~-----~~~~~~~~~~------~~~~l~i~~~~~~d~g  155 (626)
                      .+.+|++++|.|.+... .+...+.|++...  .   +.....     ......|+..      ....|+|.+++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            57899999999999976 1224668997432  1   110000     0011233332      2348999999999999


Q ss_pred             eEEEEEEeCCC
Q psy12061        156 EYECVVKSTVG  166 (626)
Q Consensus       156 ~Y~C~a~n~~g  166 (626)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.91  E-value=0.00019  Score=52.33  Aligned_cols=79  Identities=25%  Similarity=0.322  Sum_probs=51.2

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc-ceEEEEecCccceEEEeCCccCceEEEEEEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE-TAVYYLSRTTRNWALIVGLQPDTKYYVKVMA  471 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a  471 (626)
                      +|.++.+......++.|+|+++.....      .+|.+.|........ .............+.+.+|.|++.|.|+|+|
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~------~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a   76 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI------TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRA   76 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC------CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEE
Confidence            455677777777799999997654321      456666644332211 1111111222466999999999999999999


Q ss_pred             eeCCCC
Q psy12061        472 YNNAGE  477 (626)
Q Consensus       472 ~~~~g~  477 (626)
                      .+..|.
T Consensus        77 ~~~~g~   82 (83)
T smart00060       77 VNGAGE   82 (83)
T ss_pred             EcccCC
Confidence            997554

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>PHA03376 BARF1; Provisional

Probab=97.90  E-value=0.00016  Score=58.80  Aligned_cols=76  Identities=16%  Similarity=0.111  Sum_probs=52.5

Q ss_pred             ceEEecCCcEEEEEEec-ccCCcceeEEEeeCC----EEec-c------ccCCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061         90 KITIAAHRNLQLRCSAH-TEELLDVAYIWTHNG----VRIG-N------MDLNELETPNINI----DGGLLEITNASFAD  153 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~----~~~~-~------~~~~~~~~~~~~~----~~~~l~i~~~~~~d  153 (626)
                      .+.+..|+++.|.|... -...+.+.|.|+|.+    ..+- .      ..+. ...++..+    ++-+|.|.+++.+|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~Qm-EyRGrtD~~~~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEW-PFRGFFDIHRSANTFFLVVTAANISH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeee-ccccEEEEEecCCeEEEEEEeeeecC
Confidence            46778999999999988 344467889999942    1111 0      0111 23345554    44589999999999


Q ss_pred             CEeEEEEEEeCCC
Q psy12061        154 AGEYECVVKSTVG  166 (626)
Q Consensus       154 ~g~Y~C~a~n~~g  166 (626)
                      .|+|+|..+....
T Consensus        99 dGtY~C~fQkge~  111 (221)
T PHA03376         99 DGNYLCRMKLGET  111 (221)
T ss_pred             CceEEEEEEcCCC
Confidence            9999999976443

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.89  E-value=9e-05  Score=52.72  Aligned_cols=59  Identities=22%  Similarity=0.438  Sum_probs=41.7

Q ss_pred             eEEEEeeeCCC-CC-CeeEEEeCCEEccCCCc---EEEccCC------cEEEccCCCCCCEEEEEEEEcC
Q psy12061          7 NVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGR---RKIFENG------NLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         7 ~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~---~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      .++|.|.+.|. |+ .+|+|+|||+++..+..   .....+|      .|.|.....++...|+|.|...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            37899999997 65 59999999998643311   1112344      3777666677888999999765

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.87  E-value=3e-05  Score=61.12  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec------cccC----CccCCCeeEe------cCCeEEEe
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG------NMDL----NELETPNINI------DGGLLEIT  147 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~------~~~~----~~~~~~~~~~------~~~~l~i~  147 (626)
                      +.|..+.+.+|++++|.|.+.+...+...+.|+|.  +....      ....    ......|+.+      ....|.|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            45778889999999999998872222235689984  22110      0000    0011234443      23479999


Q ss_pred             ecCCCCCEeEEEEEEe
Q psy12061        148 NASFADAGEYECVVKS  163 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n  163 (626)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999998864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4367|consensus

Probab=97.83  E-value=2.1e-05  Score=71.83  Aligned_cols=81  Identities=21%  Similarity=0.359  Sum_probs=64.3

Q ss_pred             CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCC
Q psy12061        506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP  585 (626)
Q Consensus       506 ~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~  585 (626)
                      ..++++|+|+  .|.....+..||.++.-..++.    ..+.+..+..+-+++.||..++.|..+|.|+|..|.+++|+.
T Consensus       451 ~nns~t~~wk--qp~~~~~~~dg~~leld~g~~g----~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~t  524 (699)
T KOG4367|consen  451 HNNSATLSWK--QPPLSTVPADGYILELDDGNGG----QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT  524 (699)
T ss_pred             cCCceEEEee--cCCCCCCCCcceEEEeecCCCC----ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence            5679999999  5555678899999987554333    334456678889999999999999999999999999999954


Q ss_pred             cEEEeecc
Q psy12061        586 AITFQMGE  593 (626)
Q Consensus       586 ~~~~~~~~  593 (626)
                       +.+++..
T Consensus       525 -l~lqts~  531 (699)
T KOG4367|consen  525 -LVLQTSE  531 (699)
T ss_pred             -eEeeecc
Confidence             5566553

>KOG4228|consensus

Probab=97.77  E-value=0.0003  Score=73.42  Aligned_cols=320  Identities=20%  Similarity=0.197  Sum_probs=171.9

Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK  235 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~  235 (626)
                      .|+|.+....|.....+.+.|..-|..|....+......+....|.....   ....|.+.++..... ........   
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~~~~~---   73 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYIDVDL---   73 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-cceeeccc---
Confidence            49999999999988889999888777777788878888888888886533   445666666554332 11111110   


Q ss_pred             eeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCC
Q psy12061        236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREK  315 (626)
Q Consensus       236 ~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~  315 (626)
                             ...... ..+.+-+.+.+  .+.|..|.+..+.+. .-++....+...+..............+.|..+    
T Consensus        74 -------~~~~s~-~~~~~~~~~~~--~evnt~~~a~~~~~~-~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----  138 (1087)
T KOG4228|consen   74 -------TTRLSY-PCLSPPSFLEL--VEVNTIGRAPFQCPV-APRTGEQATLSLQRDVQALMLSAATAHVNWRRF----  138 (1087)
T ss_pred             -------eeeccc-CCCCCcchhhh--hhccccccccccccc-CCccccccccccccchhhhhhhhhhhccCcccc----
Confidence                   001111 11344444444  666666655444432 111211111112222111111112222222210    


Q ss_pred             cccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCC
Q psy12061        316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ  395 (626)
Q Consensus       316 ~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~  395 (626)
                                                        ..           .+.+.+.+..|.++.+......+....|..+. 
T Consensus       139 ----------------------------------~~-----------~~~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-  172 (1087)
T KOG4228|consen  139 ----------------------------------SA-----------TVGPLAIASPGLGPPSTYIQITTNANSPIQPG-  172 (1087)
T ss_pred             ----------------------------------cc-----------cccccccCCcccCCCCceEEEeccCCCCCCCC-
Confidence                                              00           01166667777776666677777777776433 


Q ss_pred             ceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCC
Q psy12061        396 GVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA  475 (626)
Q Consensus       396 ~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~  475 (626)
                          .....+.++++|.++..      ..+..|.+.++..+........   ..........++.|-..|.++..+....
T Consensus       173 ----~~~~~~~it~~w~~~~~------~~~~~ykl~~~~~d~~~~~~v~---~~~~~~~~t~~~~~~~~~~~~~ae~~~~  239 (1087)
T KOG4228|consen  173 ----EEEEYTTITGSWSPPHA------VSLDTYKLLHLDPDTGYEISVT---LTPPGSGGTGDLGPPSISRFKCAEPDRG  239 (1087)
T ss_pred             ----cceEEEEEEecCCCCCc------ccchhhhhhhcCCcccceeeee---ccCCCCCcccCCCCcccccccccCcccc
Confidence                45667899999998764      3367788876555332222111   1222224456777777888888777776


Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      +.+.....+..++...+   ............+.+..+|.  .+.....                     .....+... 
T Consensus       240 ~~~~~~a~i~~r~~~s~---~~~~~~~~~~~~~~~~~t~~--~~~~~~S---------------------~~~v~~~~~-  292 (1087)
T KOG4228|consen  240 PLGSSTAEIEARQLQSV---SKKNFETKHVFKNLVPGTWE--SFSNYAS---------------------TTNVSGRSF-  292 (1087)
T ss_pred             ccCCCCcceEEEehhhh---hccccccceeecccCCceee--eeecccc---------------------cCcccCCCc-
Confidence            66655556666655431   11222233334445555565  2211111                     011112223 


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      ..+.++.|.+.|.+.+.+....|..+.|
T Consensus       293 ~~i~~~~p~~~~~~~it~~~~~~g~~~s  320 (1087)
T KOG4228|consen  293 PLIVNLNPETEYSFVITVRLSSGGAPIS  320 (1087)
T ss_pred             ceeccCCCcccccceeeccccCCCeeEE
Confidence            6677888888888888887755554433

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.76  E-value=0.0007  Score=55.33  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=36.2

Q ss_pred             eEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCC
Q psy12061        143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL  182 (626)
Q Consensus       143 ~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~  182 (626)
                      +|.|.+++..|+|.|+|.+.+..|..+..+.|.|..+|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v   41 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV   41 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence            6899999999999999999998899999999999887753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.76  E-value=6.7e-05  Score=59.08  Aligned_cols=77  Identities=14%  Similarity=0.311  Sum_probs=50.8

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec----c-ccCCccCCCeeEec------CCeEEEeecCCC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG----N-MDLNELETPNINID------GGLLEITNASFA  152 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~----~-~~~~~~~~~~~~~~------~~~l~i~~~~~~  152 (626)
                      +.|..+.+.+|++++|.|...... ....+.|+|-  +..+.    . .........|+.+.      ...|.|.+++.+
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCC-CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            457788999999999999987643 2246789973  22111    0 00001112444432      247999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.74  E-value=0.0001  Score=48.96  Aligned_cols=59  Identities=31%  Similarity=0.470  Sum_probs=42.8

Q ss_pred             ceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          6 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         6 ~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      +.|.|+|.+.    -+|.|+| |..+....      +.+|.+-++..+-.|.|+|.+++    ......|.|++
T Consensus         7 ~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY   65 (69)
T cd07691           7 GKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY   65 (69)
T ss_pred             ceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence            5799999762    4699999 65553221      45688888999999999999977    23455666643

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.71  E-value=0.00016  Score=54.04  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=42.0

Q ss_pred             CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEE---EeecCCCCCEeEEEEEEeCC
Q psy12061         96 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLE---ITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        96 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~---i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      |+.++|.|.+.|-.++.++++|.++|..+.....    ..... ..++.++   ...+...+...|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~----~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVE----SGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECccccc----ccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            7889999999996656789999999964332210    01111 1222222   23444568889999997654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.70  E-value=0.00038  Score=51.77  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=49.9

Q ss_pred             CcEEEEEEecccCCcceeEEEeeCCE----Eeccc----c--CCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         97 RNLQLRCSAHTEELLDVAYIWTHNGV----RIGNM----D--LNELETPNINI-----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        97 ~~~~l~C~~~~~p~p~~~i~W~~~~~----~~~~~----~--~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      ++++|.|...... ....++|.|-..    .+..-    +  +...-..|+..     .+.+|.|.+++.+|+|.|+|..
T Consensus         1 ~~vtL~C~~~~~~-~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~   79 (96)
T cd05889           1 EKMKLECVYPKTG-VLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL   79 (96)
T ss_pred             CCEEEEeEcCCCC-cEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence            4689999986533 345788987421    11110    0  00011234443     3579999999999999999999


Q ss_pred             Ee-CCCceEEEEEEE
Q psy12061        162 KS-TVGKISTKTTVI  175 (626)
Q Consensus       162 ~n-~~g~~~~~~~l~  175 (626)
                      .. ..|..++.+.+.
T Consensus        80 ~t~P~g~~~~~i~~~   94 (96)
T cd05889          80 VTYPQGSWEKVIEVV   94 (96)
T ss_pred             EeCCCCCeEEEEEEE
Confidence            76 477777766653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>KOG3632|consensus

Probab=97.69  E-value=0.00043  Score=70.56  Aligned_cols=262  Identities=14%  Similarity=0.063  Sum_probs=151.3

Q ss_pred             CCCceEEEEEeccceEEEEecCCCCC--CcccEEEEEEeecCCCCceEeecceeeeeeeccCCc-eeEEEEeeccCCceE
Q psy12061        182 LPGGVQVVEVHKTSATIQWTDGATNG--RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTY  258 (626)
Q Consensus       182 ~p~~~~~~~~~~~~~~l~W~~~~~~~--~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~~~y  258 (626)
                      -|..+.++.....++.+-|++|....  .++-.|.+.....-...              .+.+. +...+.+--..+..|
T Consensus       580 ypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~elrq~--------------l~~gs~tka~~E~ld~~a~s~  645 (1335)
T KOG3632|consen  580 YPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMELRQT--------------LYAGSLTKAMQESLDNSAHSG  645 (1335)
T ss_pred             cccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhhhhh--------------cccccchHHHHhhccccCCce
Confidence            45566677788899999999875322  34444443221110000              00111 111122212345667


Q ss_pred             EEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceee
Q psy12061        259 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE  338 (626)
Q Consensus       259 ~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~  338 (626)
                      .+.|.+....|.+......  ..+.... ...|.++++...+..+..++|-+.....       -++.|....  +..  
T Consensus       646 ~isvq~ltSrGsqd~lrc~--Llvgg~a-~vvpsqlrv~n~tqtSa~itwvp~nsn~-------~Hviyln~e--E~~--  711 (1335)
T KOG3632|consen  646 YISVQRLTSRGSQDQLRCI--LLVGGAA-PVVPSQLRVWNATQTSAMITWVPFNSNF-------LHVIYLNAE--EPR--  711 (1335)
T ss_pred             eeehhhhhccCCCCcceee--Eeccccc-cccchhhhhhhhhchhhheeeeecCCCc-------ceeeecCCc--cCC--
Confidence            7777777777766555442  2222233 3788899999999999999999833221       133343222  111  


Q ss_pred             eeeeecceeeEEEEeCCCcceeEEEEEEEEecC-CC--------CCCCCccEEEEccCCCCCCCCCceEEEe-eecceEE
Q psy12061        339 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND-VG--------PGPESEVVTIFSAEDMPQVAPQGVFSRG-FNSTAIN  408 (626)
Q Consensus       339 ~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~-~g--------~~~~s~~~~~~t~~~~p~~~p~~~~~~~-~~~~si~  408 (626)
                          +.....+.+++.+|.|++.|..+|.+.-. .+        .+.....+.+.|...-|+.+|..+.+.. .+++.+.
T Consensus       712 ----ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~  787 (1335)
T KOG3632|consen  712 ----PSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLE  787 (1335)
T ss_pred             ----CchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceee
Confidence                11112334668899999999999988754 11        2233566778888888888999998875 4677899


Q ss_pred             EEeeecccc--ccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCcc-CceEEEEEEEeeCCCCCC
Q psy12061        409 VTWNPIELI--RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP-DTKYYVKVMAYNNAGEGP  479 (626)
Q Consensus       409 l~W~~~~~~--~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~v~V~a~~~~g~s~  479 (626)
                      ++|.++..+  +....-.+++|.|+...    .............+...+..|+- ...-.|.|+....-|++-
T Consensus       788 vswrPptldsag~sngv~vtgYavyadg----qkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv  857 (1335)
T KOG3632|consen  788 VSWRPPTLDSAGCSNGVAVTGYAVYADG----QKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV  857 (1335)
T ss_pred             eeccCceeccccccCceeeeeeeeeeCC----ceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence            999988643  22334568899997631    11111111112222244455554 334467777777777653

>KOG0613|consensus

Probab=97.69  E-value=0.002  Score=68.59  Aligned_cols=361  Identities=17%  Similarity=0.127  Sum_probs=182.4

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc-CCcc--CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-LNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ..+.+|.+..|.-.+.+.|.+..  .|-.++..+..-. ...+  .........+.+-+..-...+.+.|.....+..+ 
T Consensus        50 ~~~~e~~~a~~~~rv~~~~r~~~--~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-  126 (1205)
T KOG0613|consen   50 LQVKEGETALLTGRVDGEPRPEL--IWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-  126 (1205)
T ss_pred             eeccCCcceeeeeeeccccccCC--CCcccccchhhcccccccccccccccccccccccccccccccccccccccccCC-
Confidence            44556666666666677665543  4555444432110 0000  0001111122333333333444444443334444 


Q ss_pred             eEEEEEEEE-eCCCCCCCceEEEEEeccceEEEEecCC-CCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCcee
Q psy12061        168 ISTKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE  245 (626)
Q Consensus       168 ~~~~~~l~v-~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  245 (626)
                      ......+.- ..++.+|.+-....+....+...|..+. +++.....|.|+.+..+...|.........          .
T Consensus       127 ~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~----------~  196 (1205)
T KOG0613|consen  127 VVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTD----------D  196 (1205)
T ss_pred             ccccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccC----------C
Confidence            333333332 3344455555555667777888898765 455778899999999888888664332111          1


Q ss_pred             EEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEE
Q psy12061        246 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI  325 (626)
Q Consensus       246 ~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i  325 (626)
                      ..+.. ..    |.++++++-..|...+.... ........+...|........+...+.+.|... .......+.+|.+
T Consensus       197 s~~~~-a~----~e~~v~~v~s~gqp~~~~~~-~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~-~G~~~~~~~~~l~  269 (1205)
T KOG0613|consen  197 STDTD-AH----YESRVRAVVSAGQPEPLERW-EILGELIAPGSAPSMSVTLEASDRKIQLTLRAP-RGPYSAHILGYLI  269 (1205)
T ss_pred             cceec-cc----cceeEEEEEecCCCccchhh-hhcccccCCCCccccccccchhheeeeEEeecC-CCchHHHHhcchh
Confidence            11111 22    44444444444433322221 111111222233333333344556677777763 2233344556666


Q ss_pred             EEEe-cCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCc---cEEEEccCCCCCCCCCceEEEe
Q psy12061        326 FWRK-KNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE---VVTIFSAEDMPQVAPQGVFSRG  401 (626)
Q Consensus       326 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~---~~~~~t~~~~p~~~p~~~~~~~  401 (626)
                      +... .+...|........   .....+...-.++..|.+++...-..|.+.+-.   ...+.....+|...+.+.++..
T Consensus       270 e~~~~~~~~t~~i~~~~~~---~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a  346 (1205)
T KOG0613|consen  270 EQRKHKGGNTKTIQNDGPE---PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTA  346 (1205)
T ss_pred             hhcccCCCccccccccCCc---cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceecc
Confidence            5554 33444443322211   112222333346778888888887777654433   3333444455666677777888


Q ss_pred             eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCC
Q psy12061        402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG  478 (626)
Q Consensus       402 ~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s  478 (626)
                      ...+.+.+.|........   ....+|...-........ ............+.+.++-++..|..++.|.|..|..
T Consensus       347 ~d~~~v~m~~~~~~~~~p---~~~~~~~~~~~~~~~~~~-~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~  419 (1205)
T KOG0613|consen  347 RDNTLVEMPTALSGTQKP---DEAQGYHGEEVSSESLGA-LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE  419 (1205)
T ss_pred             ccCcceeecccccCCcCC---chheeecccccccccccc-cccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence            888899999975432211   113444443222221111 1222223344557888999999999999999988864

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=97.69  E-value=0.0026  Score=57.35  Aligned_cols=220  Identities=12%  Similarity=-0.011  Sum_probs=119.5

Q ss_pred             eeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeE
Q psy12061        347 GIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLI  426 (626)
Q Consensus       347 ~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~  426 (626)
                      ....+....|.+...|.+..-..+..-.+..+......+..-.   +...+......+..+.+-|.+..+..      +.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~---~~~~~~~~~~~~~~~~~~w~~~~d~~------~~   99 (343)
T COG3401          29 YQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFIE---RVRSVFASLERPKSVKVFWSPHPDVS------VG   99 (343)
T ss_pred             hhhhhhhccccccCcceeeecccccceeeecCcceEEEeeecc---ccccccchhcCcceeeecccccCCCC------CC
Confidence            3444556778888888877766655544444555555554111   11122233344567999999876543      55


Q ss_pred             EEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC
Q psy12061        427 GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN  506 (626)
Q Consensus       427 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~  506 (626)
                      .|.|+....+.. ..........-...+.-.+|.++..|...|.|.+..+.=..+....--+....|+ .-.++++....
T Consensus       100 ~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~-ei~~~~~~~d~  177 (343)
T COG3401         100 KYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPK-EITNVRVSFDL  177 (343)
T ss_pred             eEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeeeecccccCCc-eeeeeeeecCC
Confidence            799987554443 2111111122222355668999999999999988766533332111112222222 22344455557


Q ss_pred             CCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCC-CCCCCCC
Q psy12061        507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG-DGRMSSP  585 (626)
Q Consensus       507 ~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G-~g~~s~~  585 (626)
                      .+.+.|+|+.  +...+    .|.|+ ....++.   ..........+.+...--..|..|.+.|.+....| ++..+.+
T Consensus       178 ~~~i~ls~dg--~~~~~----yy~IY-~~~~g~e---~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~  247 (343)
T COG3401         178 GNNIELSEDG--SEAED----YYRIY-ASDSGNE---EYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNE  247 (343)
T ss_pred             CCcceeeccC--ccccc----eEEEe-ccCCccc---cccceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCc
Confidence            7889999994  22222    78883 4333331   11222222333333322233778888899988554 6666654


Q ss_pred             cE
Q psy12061        586 AI  587 (626)
Q Consensus       586 ~~  587 (626)
                      ..
T Consensus       248 ~t  249 (343)
T COG3401         248 PT  249 (343)
T ss_pred             cc
Confidence            33

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.67  E-value=0.00023  Score=51.55  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=43.0

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ++|.|.+.+..++ +.|+|+|||..+........  +....-...+.|.|..-...+...|+|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCC-CEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999995544 78999999999864321000  00111112345666655556677999999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.66  E-value=0.00028  Score=52.56  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=41.7

Q ss_pred             CCCceEEEEeeeCCC-CCC-eeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061          3 GEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      .+|+.++|.|.+.|. |.. +++|+|||..+..+   ....--.+|+      |.+.   .++...|+|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence            468999999999995 665 89999999998653   1111122332      4433   346668999998653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.64  E-value=0.00011  Score=55.78  Aligned_cols=73  Identities=15%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             EEecCCcEEEEEEecccCCcceeEEEeeC--CEEecc----c-cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEE
Q psy12061         92 TIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN----M-DLNELETPNINI----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~----~-~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .+.+|++++|.|.+.........+.|++.  |.....    . ........++..    ....|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998775211224689863  222110    0 000001123332    234699999999999999998


Q ss_pred             EEeC
Q psy12061        161 VKST  164 (626)
Q Consensus       161 a~n~  164 (626)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8653

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.62  E-value=0.0004  Score=54.82  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             eCCCceEEecCCcEEEEEEecccC----CcceeEEEeeCCE-----E-ec-ccc---CCccCCCeeEe------cCCeEE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEE----LLDVAYIWTHNGV-----R-IG-NMD---LNELETPNINI------DGGLLE  145 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p----~p~~~i~W~~~~~-----~-~~-~~~---~~~~~~~~~~~------~~~~l~  145 (626)
                      +.|+.+.+.+|++++|.|......    .....+.|++...     . +. ...   ....-..|+..      .+..|+
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            357788999999999999875332    1134578997421     1 11 010   00011234433      224799


Q ss_pred             EeecCCCCCEeEEEEEEeC
Q psy12061        146 ITNASFADAGEYECVVKST  164 (626)
Q Consensus       146 i~~~~~~d~g~Y~C~a~n~  164 (626)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.61  E-value=0.00014  Score=55.05  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC------eEEEeecCCCCC
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADA  154 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~  154 (626)
                      |.....+|.......++.++|.|.+.+--+..+++.|++||+.+......   .......++      .|.+..-.-.+.
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgty~~~s~L~v~~~~w~~~   78 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT---STTEQQSDNTYSLSSYLTLTKSDWNKH   78 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec---cccEECCCCCEEEEEEEEEcHHHhCCC
Confidence            33333445444555678899999999965557899999999998533110   011111133      333333332346


Q ss_pred             EeEEEEEEeCC
Q psy12061        155 GEYECVVKSTV  165 (626)
Q Consensus       155 g~Y~C~a~n~~  165 (626)
                      ..|+|.+....
T Consensus        79 ~~~sC~V~H~~   89 (100)
T cd07699          79 KVYTCEVTHEG   89 (100)
T ss_pred             CeEEEEEEecC
Confidence            68999997654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.61  E-value=0.00035  Score=51.58  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             CCCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCC---cEEEccCCcEEEc---cCCCCCCEEEEEEEEcC
Q psy12061          3 GEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGG---RRKIFENGNLLIS---PVSRDDSGIYSCTATNV   65 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~---~~~~~~~g~L~i~---~v~~~d~G~Y~C~a~n~   65 (626)
                      ..|+..+|.|.+.|. |.. .|+|+|||.++. +.   ...--.+++..+.   .+...+...|.|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            346678999999995 544 899999999986 31   1111223432211   23456778899999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.59  E-value=0.00064  Score=52.26  Aligned_cols=63  Identities=17%  Similarity=0.384  Sum_probs=42.5

Q ss_pred             CCCceEEEEeeeCCC-CC-CeeEEEeCCEEccCCCcEEE-ccCC-------cEEEccCCCCCCE-EEEEEEEcCC
Q psy12061          3 GEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGRRKI-FENG-------NLLISPVSRDDSG-IYSCTATNVH   66 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~~~~-~~~g-------~L~i~~v~~~d~G-~Y~C~a~n~~   66 (626)
                      ..|+.++|.|.+.|. |. .+|+|+|||..+........ ..++       .|.+. ....|.| .|.|.+....
T Consensus        19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence            467889999999986 64 59999999999864322111 1232       25555 3445555 5999998764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.59  E-value=0.00048  Score=50.01  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=40.9

Q ss_pred             cEEEEEEeccc-CCcceeEEEeeCCEEeccccCCcc-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         98 NLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNEL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        98 ~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .++|.|.+.+. |.  +.|.|+++|..+........ .....-...+.|.+......+.+.|+|.|.+....
T Consensus         1 ~~~L~C~~~~~~P~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           1 EVELTCTSSGSKPA--ATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             CEEEEEEecCcCcC--CeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            36899999886 54  37799999999864310000 00011111234555444455667999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.59  E-value=0.00016  Score=53.79  Aligned_cols=65  Identities=26%  Similarity=0.519  Sum_probs=43.2

Q ss_pred             CCceEEEEeee-CCCCCCeeEEEeCCEEccCC--CcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          4 EGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSG--GRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         4 ~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +|+.+.|.|.+ .|.|+|.|+|+.++..+...  .......++      .|.+..-..+|...++|.|.+....
T Consensus        13 ~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   13 EGEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             STEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             cceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            36799999987 55699999999999887211  111111122      3777655556778899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.58  E-value=0.00019  Score=54.39  Aligned_cols=40  Identities=20%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~  126 (626)
                      +|....+..|..++|.|.+.|--++.+.+.|++||+++..
T Consensus         7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768           7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            3444444567899999999996666799999999998754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.56  E-value=0.00015  Score=52.92  Aligned_cols=56  Identities=27%  Similarity=0.475  Sum_probs=39.4

Q ss_pred             eEEEEeeeCCCCCC--eeEEEeCCE--E---cc-------------CCCcEEEccC-----CcEEEccCCCCCCEEEEEE
Q psy12061          7 NVTIFCNPEAAPKP--KFVWKKDGN--I---IG-------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         7 ~~~l~C~~~g~p~p--~i~W~~~~~--~---i~-------------~~~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~   61 (626)
                      +|+|.|.+.+...+  .+.|++...  .   |.             ..+|+.+..+     -+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            48999999776543  899998431  1   10             1245555433     1599999999999999996


Q ss_pred             E
Q psy12061         62 A   62 (626)
Q Consensus        62 a   62 (626)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.56  E-value=0.00029  Score=53.25  Aligned_cols=63  Identities=22%  Similarity=0.479  Sum_probs=43.2

Q ss_pred             CCceEEEEeeeCCC-C-CCeeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061          4 EGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p-~p~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      +++.++|.|.+.|. | ..+|+|+|||.++..+   .....-.+|+      |.+..-..++...|+|.+....
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            46789999999995 6 4599999999998532   1111122453      5555444456779999998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.55  E-value=0.00032  Score=52.13  Aligned_cols=71  Identities=15%  Similarity=0.246  Sum_probs=43.7

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC------eEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ...+.++|.|.+.+--++.|+++|++||..+.......   ......++      .|.|..-.-.+...|+|.+......
T Consensus        12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s---~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAAST---APQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeec---ccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            35677999999999655679999999999874321100   11111222      3333332223556899999876544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.55  E-value=0.34  Score=57.38  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=63.7

Q ss_pred             CCCCEEEE--EEEEcCCCCceeeEEEEEEeCCceeeeC-------------CCceEEecCCcEEEEEEecccCCcceeEE
Q psy12061         52 RDDSGIYS--CTATNVHGMDESKGRLIVLHGPSYYEQL-------------PPKITIAAHRNLQLRCSAHTEELLDVAYI  116 (626)
Q Consensus        52 ~~d~G~Y~--C~a~n~~g~~~~~~~l~v~~~p~~~~~~-------------~~~~~v~~g~~~~l~C~~~~~p~p~~~i~  116 (626)
                      ....|.|.  -.|.|..|...++..+.|..+-..+...             .....+..+..+.|.-.....  ..+++.
T Consensus      1564 Y~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~G--Tnvsys 1641 (2740)
T TIGR00864      1564 FRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDG--TNLSFS 1641 (2740)
T ss_pred             ecCCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCC--CeeEEE
Confidence            34567775  4677999998888888776543222111             111345666777777555443  346889


Q ss_pred             EeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE--EEeCCCceEEEEEEEEeCC
Q psy12061        117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV--VKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       117 W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~--a~n~~g~~~~~~~l~v~~~  179 (626)
                      |..-+..-...       ......+....   +...+.|.|...  |.|..|....+..+.+.+|
T Consensus      1642 W~~~~~n~~dg-------~~~~~tGk~~~---vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ep 1696 (2740)
T TIGR00864      1642 WNAILDNEPDG-------PAFAGSGKGAK---LNPLEAGPCDIFLQAANLLGQATADCTIDFLEP 1696 (2740)
T ss_pred             EEEecCCCCCC-------ccccccCceeE---EecCCCceEEEEEEEeecccceeeEEEEEEEEE
Confidence            97621100000       00001111222   223666776664  5799999888877777653

Note: this model has been restricted to the amino half because for technical reasons.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.55  E-value=0.00037  Score=51.76  Aligned_cols=64  Identities=16%  Similarity=0.284  Sum_probs=42.7

Q ss_pred             CceEEEEeeeCCC-CC-CeeEEEeCCEEccCC---CcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          5 GGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSG---GRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         5 G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~---~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      ++.++|.|.+.|. |. .+|+|+|||..+..+   .....-.++      .|.|..-...+...|+|.+......
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4669999999995 65 499999999987322   111222233      3656544445678999999876433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.53  E-value=0.00076  Score=48.95  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccC--CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDL--NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ++|.|.+.+.-++ +.|.|++||..+.....  ........-...+.|.|......+...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPA-ANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCC-CEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6899999986333 47899999998865321  00000000011234445455556678999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.53  E-value=0.00043  Score=52.52  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEE-----eccc-cCCccCCCeeEe------cCCeEEEeecCCCCCEeEE
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-----IGNM-DLNELETPNINI------DGGLLEITNASFADAGEYE  158 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~-----~~~~-~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~  158 (626)
                      +.+.+|++++|.|...... ....+.|+|....     +... ........|+.+      ....|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~-~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKN-RSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCC-CCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence            4678999999999987632 2235689985321     1000 000011233333      1247999999999999999


Q ss_pred             EEEEeCC
Q psy12061        159 CVVKSTV  165 (626)
Q Consensus       159 C~a~n~~  165 (626)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9887654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG4152|consensus

Probab=97.52  E-value=0.00046  Score=65.18  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=80.6

Q ss_pred             EeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCC-CCceeeEEEEEE
Q psy12061        456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW  534 (626)
Q Consensus       456 i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~-~~~i~~Y~i~~~  534 (626)
                      -..|-+|+.|.|+|.|+|..|.+++|....+.|-...-+.+|+.+++. .+-..+.|.|+  +|... .|.|..|..+.-
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~we--ppt~p~sg~Iieys~ylA  727 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWE--PPTKPGSGTIIEYSPYLA  727 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeeccc--CCCCCCCcceEEeehhhH
Confidence            357889999999999999999999999988887654444577777665 35567999999  44444 678888877432


Q ss_pred             EeccC----CccccceeeecCccceE---------EecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        535 EVDQD----MSRANDTIIPVGNTLDA---------DIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       535 ~~~~~----~~~~~~~~~~~~~~~~~---------~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      -..+.    ..........-+-.+.+         -+.+...+..--|+|.|.|+.|.|+..
T Consensus       728 i~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpat  789 (830)
T KOG4152|consen  728 IITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPAT  789 (830)
T ss_pred             hhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcce
Confidence            21111    00000000111111111         122334466788999999999998744

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.52  E-value=0.00042  Score=51.80  Aligned_cols=62  Identities=23%  Similarity=0.459  Sum_probs=40.3

Q ss_pred             CceEEEEeeeCCC-CCC-eeEEEeCCEEccCC---CcEEEccCCcE---EEccCCCCCCEEEEEEEEcCC
Q psy12061          5 GGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG---GRRKIFENGNL---LISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         5 G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~---~~~~~~~~g~L---~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |+.++|.|.+.|. |.+ +++|+|+|..+...   .......+|+.   ..-.+..+|.+.|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            7789999999996 654 99999999744322   12222234421   112233458899999998663

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.50  E-value=0.00025  Score=53.70  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=40.9

Q ss_pred             CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCcEE----Ec--cCCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061          4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK----IF--ENGN------LLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~~~----~~--~~g~------L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      .|+.++|.|.+.|. |.. +++|+|||.++.......    ..  .+|+      |.|..-...+...|+|.+...
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            57899999999996 544 789999999985432111    11  1343      555433334566899999754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.47  E-value=0.0006  Score=50.56  Aligned_cols=59  Identities=24%  Similarity=0.418  Sum_probs=40.2

Q ss_pred             CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061          4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      .|+.++|.|.+.|. |.. .++|+|||.++..+   .....-.+|+      |.+.   .++...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            45668999999996 654 89999999998543   1122223442      5544   34566899999754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.47  E-value=0.00048  Score=53.16  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=43.6

Q ss_pred             EEecCCcEEEEEEecccCCcceeEEEeeCCEE-----e------cccc-CC---ccCCCeeEe--c----CCeEEEeecC
Q psy12061         92 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-----I------GNMD-LN---ELETPNINI--D----GGLLEITNAS  150 (626)
Q Consensus        92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~-----~------~~~~-~~---~~~~~~~~~--~----~~~l~i~~~~  150 (626)
                      .+.+|++++|.|.+.+.... ..+.|+|-...     +      .... ..   .....++..  .    ...|+|.+++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISEN-TRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCC-CeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            57899999999998764322 25689973211     0      0000 00   001123322  1    1359999999


Q ss_pred             CCCCEeEEEEEEe
Q psy12061        151 FADAGEYECVVKS  163 (626)
Q Consensus       151 ~~d~g~Y~C~a~n  163 (626)
                      .+|+|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.43  E-value=0.00069  Score=48.17  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC------CeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         98 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        98 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .++|.|.+.+--++.+.+.|+|||+++......   .......+      +.|.|......+...|+|.+....
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~---~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVST---TDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEE---CceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            378999999975566889999999975432100   00011122      345554445567779999997653

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.40  E-value=0.0008  Score=50.11  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEE---eecCCCCCEeEEEEEEeCC
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI---TNASFADAGEYECVVKSTV  165 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ..|+.++|.|.+.+--++.++++|++||..+......   ..-....++++++   ..+..++...|+|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS---TELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee---cceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            3689999999999966677899999999997653100   0111112222222   1233455668899887654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.39  E-value=0.00075  Score=52.06  Aligned_cols=81  Identities=17%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe------cCCeEEEeecCCCC-CEeEE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI------DGGLLEITNASFAD-AGEYE  158 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d-~g~Y~  158 (626)
                      .+|.......++.++|.|.+.+--+..+++.|+|||..+.......  ......      -.+.|.|..-.-.+ ...|+
T Consensus         8 ~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~--~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~yt   85 (115)
T cd05769           8 FPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATD--PQALRENTSTYSISSRLRVSATEWFNPRNTFT   85 (115)
T ss_pred             ECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccc--cceecCCCCeEEEEEEEEEChHHhccCCCeEE
Confidence            3454444556788999999999655678999999999876432100  001111      12234433322223 45899


Q ss_pred             EEEEeCCCce
Q psy12061        159 CVVKSTVGKI  168 (626)
Q Consensus       159 C~a~n~~g~~  168 (626)
                      |.+.......
T Consensus        86 C~V~H~g~~~   95 (115)
T cd05769          86 CIVQFYGGTD   95 (115)
T ss_pred             EEEEEeCCcc
Confidence            9887654443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.39  E-value=0.00044  Score=51.36  Aligned_cols=40  Identities=13%  Similarity=-0.009  Sum_probs=30.6

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~  126 (626)
                      +|.......++.++|.|.+.+--++.|+++|++||..+..
T Consensus         7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697           7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            3444444456789999999995556799999999998754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.38  E-value=0.0006  Score=49.72  Aligned_cols=61  Identities=28%  Similarity=0.494  Sum_probs=43.2

Q ss_pred             CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCcEE--E-ccCC------cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK--I-FENG------NLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~~~--~-~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      .++.++|.|.+.|. |.. +|.|++||..+.......  . -.+|      .|.+.   .++...|+|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            47899999999986 655 899999999986542211  1 2344      36665   5566689999986643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd00096 Ig Immunoglobulin domain

Probab=97.35  E-value=0.00083  Score=47.25  Aligned_cols=66  Identities=24%  Similarity=0.464  Sum_probs=45.3

Q ss_pred             EEEEEEecccCCcceeEEEeeCCEEeccccCC-ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         99 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-ELETPNINIDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      +.|.|.+.+.+  ...+.|++++......... .............|.|.++...|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPP--PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCC--CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence            47899999833  4567999988776543210 000112223556899999999999999999987763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG4367|consensus

Probab=97.32  E-value=0.00022  Score=65.32  Aligned_cols=83  Identities=16%  Similarity=0.214  Sum_probs=64.0

Q ss_pred             eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCC
Q psy12061        401 GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE  480 (626)
Q Consensus       401 ~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~  480 (626)
                      ....++++|+|+.|....    -+.+||.++.-..++.....   +..+..+-.++.+|..++.|..+|.|+|..|.+++
T Consensus       449 ~t~nns~t~~wkqp~~~~----~~~dg~~leld~g~~g~fre---vy~g~etmctvdglhfns~y~arvka~n~tg~s~y  521 (699)
T KOG4367|consen  449 CTHNNSATLSWKQPPLST----VPADGYILELDDGNGGQFRE---VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY  521 (699)
T ss_pred             hccCCceEEEeecCCCCC----CCCcceEEEeecCCCCceeE---EEecCceeEEecceecchhHHHHHHHhhccCCCcc
Confidence            355679999999666544    44889999975543333222   33455556899999999999999999999999999


Q ss_pred             CccEEEeecC
Q psy12061        481 SERYLERTYR  490 (626)
Q Consensus       481 s~~~~~~t~~  490 (626)
                      |..+...|.+
T Consensus       522 s~tl~lqts~  531 (699)
T KOG4367|consen  522 SKTLVLQTSE  531 (699)
T ss_pred             cceeEeeecc
Confidence            9999888875

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.31  E-value=0.001  Score=52.19  Aligned_cols=77  Identities=14%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec----cc---cC---CccCCCeeEec----C--CeEEEee
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG----NM---DL---NELETPNINID----G--GLLEITN  148 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~----~~---~~---~~~~~~~~~~~----~--~~l~i~~  148 (626)
                      .|....+.+|++++|.|...+...-.-.+.|+|-  |+...    ..   ..   ......|+...    .  ..|+|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            4677889999999999987654311124689872  22210    00   00   00112344331    1  2699999


Q ss_pred             cCCCCCEeEEEEEEe
Q psy12061        149 ASFADAGEYECVVKS  163 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n  163 (626)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG4152|consensus

Probab=97.30  E-value=0.0017  Score=61.56  Aligned_cols=124  Identities=20%  Similarity=0.299  Sum_probs=79.7

Q ss_pred             eCCCcceeEEEEEEEEecCCCCCCCCccEEEEcc-CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEE
Q psy12061        353 IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK  431 (626)
Q Consensus       353 ~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~-~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~  431 (626)
                      -..|.+|+.|.|+|.|.|..|.+++|....+.|- +..|. +|..++.. .+-..+.+.|++|...+   .|.|..|..+
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~-k~~eGi~l~weppt~p~---sg~Iieys~y  725 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIK-KTIEGISLVWEPPTKPG---SGTIIEYSPY  725 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Cccccccc-ccccceeecccCCCCCC---CcceEEeehh
Confidence            3468899999999999999999999999887764 45555 77777665 45567999999998664   2778888766


Q ss_pred             EEecC-----CCccceEEEEe---------cCccceEEEeCCccCceEEEEEEEeeCCCCCCCC
Q psy12061        432 YWKED-----NPEETAVYYLS---------RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES  481 (626)
Q Consensus       432 ~~~~~-----~~~~~~~~~~~---------~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s  481 (626)
                      .--..     ...........         ...+.-..+.+...+-.-.|+|.|.|..|.|+..
T Consensus       726 lAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpat  789 (830)
T KOG4152|consen  726 LAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPAT  789 (830)
T ss_pred             hHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcce
Confidence            41111     11111111000         0001111123334455678999999999987754

>KOG0613|consensus

Probab=97.27  E-value=0.0082  Score=64.27  Aligned_cols=280  Identities=17%  Similarity=0.144  Sum_probs=146.7

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.+-.........+...|..+ ..+.......|.|+.+..+...|.........+..     +....    |.+++++
T Consensus       141 ~~~~~~~sv~~~~~~v~~~~~~~-~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~-----~~~a~----~e~~v~~  210 (1205)
T KOG0613|consen  141 PPPSNRESVLVHRARVLPAWRPP-REDGGRKREEYIIERRQAGRSPWLKRLTQPTDDST-----DTDAH----YESRVRA  210 (1205)
T ss_pred             CCCCCccceeecCceecccccCC-ccCccceeecceEEEEeccCCCcccccccccCCcc-----eeccc----cceeEEE
Confidence            34444444444556777888873 55666778889999998887766643332211111     11222    4455555


Q ss_pred             ecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEec
Q psy12061        369 INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR  448 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~  448 (626)
                      +-..|....-......-....|...|..-.........+.+.|..+..+.   ...+.+|.+......+...........
T Consensus       211 v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~---~~~~~~~l~e~~~~~~~~t~~i~~~~~  287 (1205)
T KOG0613|consen  211 VVSAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPY---SAHILGYLIEQRKHKGGNTKTIQNDGP  287 (1205)
T ss_pred             EEecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCch---HHHHhcchhhhcccCCCccccccccCC
Confidence            54444433221111111111222223222222233445677776554321   134555655544322211111111112


Q ss_pred             CccceEEEeCCccCceEEEEEEEeeCCCCC---CCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCc
Q psy12061        449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP  525 (626)
Q Consensus       449 ~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s---~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~  525 (626)
                      ....+++...-.++..|.+.+...-..|.+   +.+....+.+....|...+.++.+...+.+.+.+.|.- +-......
T Consensus       288 ~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~-~~~~~p~~  366 (1205)
T KOG0613|consen  288 EPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL-SGTQKPDE  366 (1205)
T ss_pred             ccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc-cCCcCCch
Confidence            222335555556778888888887776654   34444445555566666777777887788899999973 11111222


Q ss_pred             eeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCC
Q psy12061        526 IIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS  584 (626)
Q Consensus       526 i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~  584 (626)
                      +.+|.+.-........  ..........+.+.+.++.++..|..++.|.|..|......
T Consensus       367 ~~~~~~~~~~~~~~~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~  423 (1205)
T KOG0613|consen  367 AQGYHGEEVSSESLGA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA  423 (1205)
T ss_pred             heeecccccccccccc--cccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence            4445543211111100  11112223456677889999999999999999999766443

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.27  E-value=0.0011  Score=44.00  Aligned_cols=52  Identities=13%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ..|.+|+|.|.....     .+.|.+|+..+..             .+..+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~-----~i~W~~n~~~~~g-------------~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD-----DIKWKKNDQVSQG-------------SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC-----CceEEeCCccCCC-------------CCceEEeeccC-CCCceEEEEeCCC
Confidence            469999999975533     2589999966543             22344455555 8899999998643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=97.26  E-value=0.0016  Score=50.22  Aligned_cols=86  Identities=23%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             CCCceEEEeeecceEEEEeeecccc----cc-----ccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCc
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELI----RE-----NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT  463 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~----~~-----~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t  463 (626)
                      || .+.+ ....+++.|.+.+|...    ..     ...+ -..|.|.||+.......   .........+.|.+|.|++
T Consensus         5 PP-~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~-~~~Y~v~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t   78 (106)
T PF09294_consen    5 PP-SVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYP-SLSYNVSYWKNGSNEKK---KEIETKNSSVTLSDLKPGT   78 (106)
T ss_dssp             SS-EEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHG-G-EEEEEEEETTTSCEE---EEEESSSEEEEEES--TTS
T ss_pred             CC-EEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCC-CeEEEEEEEeCCCccce---EEEeecCCEEEEeCCCCCC
Confidence            55 4777 57788999999988621    00     0011 24699999998887222   1223444557899999999


Q ss_pred             eEEEEEEEeeCC--CCCCCCccE
Q psy12061        464 KYYVKVMAYNNA--GEGPESERY  484 (626)
Q Consensus       464 ~Y~v~V~a~~~~--g~s~~s~~~  484 (626)
                      .|-|+|+|....  ..|.+|...
T Consensus        79 ~YCv~V~~~~~~~~~~s~~S~~~  101 (106)
T PF09294_consen   79 NYCVSVQAFSPSQNKNSQPSEPQ  101 (106)
T ss_dssp             EEEEEEEEEECSSTEEEEEBSEE
T ss_pred             CEEEEEEEEeccCCCcCCCCCCE
Confidence            999999994332  234555544

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.26  E-value=0.0018  Score=48.32  Aligned_cols=63  Identities=14%  Similarity=0.249  Sum_probs=39.0

Q ss_pred             CCceEEEEeeeCCC--CCC-eeEEEeCCEEc-cCC-CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061          4 EGGNVTIFCNPEAA--PKP-KFVWKKDGNII-GSG-GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         4 ~G~~~~l~C~~~g~--p~p-~i~W~~~~~~i-~~~-~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      .|+.++|.|.+.|.  |.. .|+|.|||... ... .......+|+      |.+..-...+.-.|.|.+....
T Consensus        13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             cCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            47899999999998  554 89999987433 211 1112223443      4444333334457999998653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=97.22  E-value=0.002  Score=49.74  Aligned_cols=90  Identities=24%  Similarity=0.395  Sum_probs=54.6

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCC----CCCCC------ceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSP----SFEEE------PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~----~~~~~------~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  564 (626)
                      +||. +.+ ....+.+.|.+.+|..    ...+.      .-..|.|.||.....    ............+.|.+|.|+
T Consensus         4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~l~~L~p~   77 (106)
T PF09294_consen    4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN----EKKKEIETKNSSVTLSDLKPG   77 (106)
T ss_dssp             -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS----CEEEEEESSSEEEEEES--TT
T ss_pred             cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc----cceEEEeecCCEEEEeCCCCC
Confidence            3564 777 4677899999995320    01111      113599999887665    223344556667799999999


Q ss_pred             ceEEEEEEEEecC--CCCCCCCCcEEEee
Q psy12061        565 KRYHMRVLAFSNG--GDGRMSSPAITFQM  591 (626)
Q Consensus       565 ~~Y~~~V~a~~~~--G~g~~s~~~~~~~~  591 (626)
                      +.|-|+|+|....  ..|.+|.+ .+.++
T Consensus        78 t~YCv~V~~~~~~~~~~s~~S~~-~C~~t  105 (106)
T PF09294_consen   78 TNYCVSVQAFSPSQNKNSQPSEP-QCITT  105 (106)
T ss_dssp             SEEEEEEEEEECSSTEEEEEBSE-EEEE-
T ss_pred             CCEEEEEEEEeccCCCcCCCCCC-EeEeC
Confidence            9999999994332  35666643 44443

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.21  E-value=0.00069  Score=51.86  Aligned_cols=70  Identities=19%  Similarity=0.326  Sum_probs=43.7

Q ss_pred             EEecCCcEEEEEEecccCCcceeEEEeeC--C--EEe---c---cc-cC----CccCCCeeEe----cCCeEEEeecCCC
Q psy12061         92 TIAAHRNLQLRCSAHTEELLDVAYIWTHN--G--VRI---G---NM-DL----NELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~--~~~---~---~~-~~----~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      .+.+|++++|.|........  .+.|+|-  |  ...   .   .. ..    ......++..    ....|+|.+++.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s   79 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE   79 (104)
T ss_pred             cccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence            36789999999998655332  4689873  3  111   1   00 00    0001234432    2347999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+.+
T Consensus        80 DsgtY~Ca~~~   90 (104)
T cd05720          80 NEGYYFCSVAS   90 (104)
T ss_pred             HCEEEEEEEcc
Confidence            99999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.19  E-value=0.0015  Score=49.38  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=42.9

Q ss_pred             CCCCceEEEEeeeCCCCC---CeeEEEe--CCE-Ec------------cCCCcEEEccCC-----cEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK---PKFVWKK--DGN-II------------GSGGRRKIFENG-----NLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~---p~i~W~~--~~~-~i------------~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y   58 (626)
                      +..|+.++|.|.++|.-.   -.+.|.|  +|. +.            ...+|..+..+.     +|.|.+++.+|++.|
T Consensus        10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y   89 (115)
T cd05721          10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIY   89 (115)
T ss_pred             EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEE
Confidence            578999999999988633   3689998  331 11            012333333222     599999999999999


Q ss_pred             EEEE
Q psy12061         59 SCTA   62 (626)
Q Consensus        59 ~C~a   62 (626)
                      .|..
T Consensus        90 ~Ca~   93 (115)
T cd05721          90 FCKI   93 (115)
T ss_pred             EEEe
Confidence            9986

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.18  E-value=0.002  Score=49.76  Aligned_cols=66  Identities=21%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             CCceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCc---EEEccC-C------cEEEccCCCCC-CEEEEEEEEcCCCCc
Q psy12061          4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGR---RKIFEN-G------NLLISPVSRDD-SGIYSCTATNVHGMD   69 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~---~~~~~~-g------~L~i~~v~~~d-~G~Y~C~a~n~~g~~   69 (626)
                      +++.++|.|.+.|. |.. +|+|+|||..+..+..   .....+ |      .|.|..-...| ...|.|.+.......
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence            46779999999996 664 9999999999864321   122222 3      36666544434 568999998664443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>KOG1480|consensus

Probab=97.16  E-value=0.0002  Score=71.19  Aligned_cols=78  Identities=29%  Similarity=0.472  Sum_probs=64.6

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEEEe
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~   79 (626)
                      |.++..++|.|.. .+.|...++|+|++..++.+.......++.|+|..+.+.|.|+|+|+|.|..+.... .+.+.|+.
T Consensus       141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv  220 (909)
T KOG1480|consen  141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV  220 (909)
T ss_pred             ecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence            4567788888886 778999999999999999877777788899999999999999999999998887443 34555543

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.15  E-value=0.0016  Score=48.59  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             CCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEe
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRI  124 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~  124 (626)
                      +|....+..|+.++|.|.+.+- -++.+.++|+||+...
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~   43 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP   43 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence            4455556779999999999998 5668999999997543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.14  E-value=0.0011  Score=49.29  Aligned_cols=43  Identities=21%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccC-CcceeEEEeeCCEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVR  123 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~  123 (626)
                      |.....+|.......+..++|.|.+.+-- +..+.+.|.++|..
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            33434445555566789999999999944 45689999999876

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.14  E-value=0.0014  Score=48.42  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe---ecCCCCCEeEEEEEEeC
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKST  164 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g~Y~C~a~n~  164 (626)
                      ..|...+|.|.+.+--++.|.++|+|||..+. ... .  ..-....++++++.   .+...+...|.|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~-~--~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE-Q--SDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE-E--CcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            34677899999999666779999999999986 311 0  11122233444432   34566777899998764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.08  E-value=0.002  Score=47.74  Aligned_cols=66  Identities=17%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             cCCcEEEEEEecccCCcceeEEEeeCCEEeccccC----CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      .|+..+|.|.+.|--+..|+++|.+||..+.....    ....+..+.. ...|.+.   ..+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-FSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-EEEEEEE---CCCCCeEEEEEEeC
Confidence            46668999999995556789999999998754210    0000111111 1233333   34556899988754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.06  E-value=0.0025  Score=47.46  Aligned_cols=62  Identities=13%  Similarity=0.203  Sum_probs=39.5

Q ss_pred             ceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          6 GNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         6 ~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      ....+.|.+ .|.|+++|+|+++.... .........+|      .|.+.....+|...|+|.|.+....
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~-~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGE-AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCc-ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            567889999 56799999999972111 01111222333      3666555555666899999987544

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.05  E-value=0.059  Score=49.77  Aligned_cols=124  Identities=15%  Similarity=0.247  Sum_probs=73.5

Q ss_pred             eEEecCCcEEEEEEecccCCcc-eeEEEeeCCEEeccc------------cCCccCCC--------eeEecCCeEEEeec
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLD-VAYIWTHNGVRIGNM------------DLNELETP--------NINIDGGLLEITNA  149 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~-~~i~W~~~~~~~~~~------------~~~~~~~~--------~~~~~~~~l~i~~~  149 (626)
                      +.+..|..+.|.|....-..-. -.+.|.--|-++.+.            +.-....-        ...+-.++|+|.++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            4666799999999988622211 235798766665421            00000001        11123468999999


Q ss_pred             CCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEee-cCCCCceEe
Q psy12061        150 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNV  228 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~-~~~~~w~~~  228 (626)
                      .-+..|=|.|.|....-.....--|.                -.+++-+.|..-.++...+.-|..++.. .....|...
T Consensus       354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~----------------V~d~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvn  417 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKEECRHCFK----------------VADHVFFKWNTEGDNETKVACYAAQYDMQPFSILWKSN  417 (500)
T ss_pred             EEEcCCceEEEEecCcchhhhhhheE----------------eccEEEEEEEeccCceEEEEEEEEecccCCceeEEEEc
Confidence            99999999999976533322222222                2457888998554555566677777633 334566654


Q ss_pred             ec
Q psy12061        229 SE  230 (626)
Q Consensus       229 ~~  230 (626)
                      +.
T Consensus       418 GV  419 (500)
T PHA02914        418 GV  419 (500)
T ss_pred             cE
Confidence            33

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.05  E-value=0.0025  Score=47.36  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=37.2

Q ss_pred             CceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCc--EEEccCC------cEEEccCCCCCCEEEEEEEEcC
Q psy12061          5 GGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGR--RKIFENG------NLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         5 G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~--~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      ++.++|.|.+.|. |.. +++|+|||..+..+..  ..+..++      .|.|..-.  ....|+|.+...
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            5679999999995 654 8999999998754311  0111122      25444322  233599999863

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.98  E-value=0.0012  Score=48.08  Aligned_cols=66  Identities=21%  Similarity=0.314  Sum_probs=44.1

Q ss_pred             cCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC------eEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         95 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        95 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      .++.++|.|.+.+--+..|+|.|++||..+.......   ......++      .|.+.   ..+...|+|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~---~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETT---PPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEE---EEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeec---ccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            3899999999999666789999999999986542100   01101222      34444   4556689999986644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>KOG1480|consensus

Probab=96.94  E-value=0.00025  Score=70.52  Aligned_cols=158  Identities=21%  Similarity=0.280  Sum_probs=95.3

Q ss_pred             CCCCCceEEEEeeeCCCCCC----eeEEEeCCEEc---cCC---CcEEEccCCcEEEccCCCC-----CCEEEEEEEEcC
Q psy12061          1 YAGEGGNVTIFCNPEAAPKP----KFVWKKDGNII---GSG---GRRKIFENGNLLISPVSRD-----DSGIYSCTATNV   65 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p----~i~W~~~~~~i---~~~---~~~~~~~~g~L~i~~v~~~-----d~G~Y~C~a~n~   65 (626)
                      |++.|..+.|.|.+...+..    .=.|..+.+.+   ..+   ++....  -.+.|..-+-+     +.-.-+|.|...
T Consensus        35 yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~--~si~Isr~~v~~~~~~~d~~cQc~a~~~  112 (909)
T KOG1480|consen   35 YIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVRE--VSIDISRQQVETSGGPEDYWCQCVAWSD  112 (909)
T ss_pred             ceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEe--eeeeeehhhhhcccCccceeeeeeeecC
Confidence            67889999999998655332    23344332211   110   111110  11333322222     333457788877


Q ss_pred             CCCceee-EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCe
Q psy12061         66 HGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL  143 (626)
Q Consensus        66 ~g~~~~~-~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (626)
                      .|...+. +.+.+.+.-....+.|....|..+....+.|...- .|.  ..++|++++..+....      +-+......
T Consensus       113 ~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~pa--ae~~w~k~e~~~~pd~------n~~~~~d~~  184 (909)
T KOG1480|consen  113 DGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPK--AEVEWLKNEVVIDPDA------NVIRASDHN  184 (909)
T ss_pred             CCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchh--hhhhccccCCCCCccc------cchhhhcCC
Confidence            7743222 11111112223344567778899999999998653 433  4568999999887732      445557789


Q ss_pred             EEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        144 LEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       144 l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      |.+..+...|.|+|+|+|.|..+..
T Consensus       185 li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  185 LIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             ccccchhhhhcccceeeeehhhccc
Confidence            9999999999999999999877753

>smart00406 IGv Immunoglobulin V-Type

Probab=96.90  E-value=0.0012  Score=47.94  Aligned_cols=63  Identities=21%  Similarity=0.364  Sum_probs=38.5

Q ss_pred             cEEEEEEecccCCcceeEEEeeCCE--E---eccc-----cCCc-cCCCeeEec------CCeEEEeecCCCCCEeEEEE
Q psy12061         98 NLQLRCSAHTEELLDVAYIWTHNGV--R---IGNM-----DLNE-LETPNINID------GGLLEITNASFADAGEYECV  160 (626)
Q Consensus        98 ~~~l~C~~~~~p~p~~~i~W~~~~~--~---~~~~-----~~~~-~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      +++|.|.+.....+...+.|++...  .   +...     .... ....|+...      ...|+|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999887665434678987432  1   1100     0000 112344321      24699999999999999996

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.90  E-value=0.0023  Score=42.72  Aligned_cols=51  Identities=20%  Similarity=0.450  Sum_probs=37.8

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      ...+.|.|.|...      -+|.|++ |..+...            .+..|.+-+......|.|+|.+.+
T Consensus         4 e~~~~V~L~C~~~------tsi~W~k-G~~~~~~------------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           4 ESEGKVFLKCNGA------TNITWKK-GKEILEV------------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ecCceEEEEecCC------CcEEEec-Ccccccc------------cccEEeccCcccCCCcceEecCcc
Confidence            3456799999652      1468999 6665432            256788888888999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.89  E-value=0.11  Score=48.55  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=56.2

Q ss_pred             cEEEccCCCCCCEEEEEEEEcCCCCc--eeeEEEEEEe-CCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEee
Q psy12061         44 NLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVLH-GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTH  119 (626)
Q Consensus        44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~-~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~  119 (626)
                      .|.|.+|...|+|.|+-...+.....  .....+.+.+ +|.+...++   -+..|+...-.|.+.. .|+-.+.+.|++
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~---PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP---PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            49999999999997765555544442  2334444444 443433322   3788999999999987 455568899999


Q ss_pred             CCEEeccc
Q psy12061        120 NGVRIGNM  127 (626)
Q Consensus       120 ~~~~~~~~  127 (626)
                      ||.++...
T Consensus       285 nG~~V~~~  292 (490)
T PHA03271        285 NGNIATPR  292 (490)
T ss_pred             CCccccCc
Confidence            99998654

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.88  E-value=0.0065  Score=44.53  Aligned_cols=72  Identities=10%  Similarity=0.128  Sum_probs=45.0

Q ss_pred             EecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCCccCCCee-EecCCeEEEeecCCCCCE-eEEEEEEeCC
Q psy12061         93 IAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNI-NIDGGLLEITNASFADAG-EYECVVKSTV  165 (626)
Q Consensus        93 v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g-~Y~C~a~n~~  165 (626)
                      +.+|..+++.|.+.+. |...+++.|++....+....+.......- ......+.+.. +++|.| .|.|.|.-..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence            5899999999999874 44357889999877776543211100000 01223555555 467766 9999997443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.86  E-value=0.0034  Score=46.75  Aligned_cols=42  Identities=17%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR  123 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~  123 (626)
                      |.++..+|.... ..++.++|.|.+.+--+..++++|+|||..
T Consensus         2 P~v~~l~~~~~~-~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985           2 PTVFPLVPCCSS-SSSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CeEEEeCCCccc-cCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            444444443333 256779999999996556799999999998

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.85  E-value=0.0017  Score=50.45  Aligned_cols=76  Identities=21%  Similarity=0.289  Sum_probs=46.3

Q ss_pred             CCCCCceEEEEeeeCCC-----CCCeeEEEeCCEEcc--CC-CcEEE-----------ccCC--cEEEccCCCCCCEEEE
Q psy12061          1 YAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIG--SG-GRRKI-----------FENG--NLLISPVSRDDSGIYS   59 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~--~~-~~~~~-----------~~~g--~L~i~~v~~~d~G~Y~   59 (626)
                      |..-+++|.|.|.+...     +.-.|+|.++|+.|-  .+ .....           +..|  +|.+...+.- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            34567899999999763     234699999999873  11 11111           1123  4777775554 89999


Q ss_pred             EEEEcCCCCceeeEEEEE
Q psy12061         60 CTATNVHGMDESKGRLIV   77 (626)
Q Consensus        60 C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+.....+......|..
T Consensus       102 CeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEE
Confidence            999987776666666655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.84  E-value=0.12  Score=49.15  Aligned_cols=154  Identities=18%  Similarity=0.299  Sum_probs=81.9

Q ss_pred             CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccC-C---CcEEEccCC------cEEEccCCC-CCCEEEEEEEEc-CC
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGS-G---GRRKIFENG------NLLISPVSR-DDSGIYSCTATN-VH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~-~---~~~~~~~~g------~L~i~~v~~-~d~G~Y~C~a~n-~~   66 (626)
                      |-+|+...-.|.+... |+-  .+.|++||.++.. .   +......+|      +|.+..... +..=..+|.+.= ..
T Consensus       247 vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd  326 (486)
T PHA03273        247 SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRD  326 (486)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccC
Confidence            4589999999999775 442  8999999999973 2   223333344      244444322 233368998873 33


Q ss_pred             CCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE-EeccccCCccCCCeeEecCCeEE
Q psy12061         67 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-RIGNMDLNELETPNINIDGGLLE  145 (626)
Q Consensus        67 g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  145 (626)
                      +...+.  +.-...|.....|.-.+....|   ...|++...|.-.+.+.|..++. +.....  ....+-.....+...
T Consensus       327 ~vS~~R--fsAt~~P~Vy~~P~Is~~F~~G---~AVCtA~CVP~egV~l~W~v~D~~p~a~~~--~~~tG~C~~~PglvN  399 (486)
T PHA03273        327 EVSFAR--IAKAGTPSVFVAPTVSVTVEDG---DAVCTAKCVPSTGVFVSWSVNDHLPGVPSQ--DMTTGVCSSHPGLVN  399 (486)
T ss_pred             Ccceee--ccccccCccccCCeEEEEEeCC---EEEEecccccCCCeeEEEEccCCCCCCccc--ccccccCCCCCCcee
Confidence            322222  1111223222211112223333   45688888886568899986652 211110  001111222334566


Q ss_pred             Eee---cCCCCCE--eEEEEEEe
Q psy12061        146 ITN---ASFADAG--EYECVVKS  163 (626)
Q Consensus       146 i~~---~~~~d~g--~Y~C~a~n  163 (626)
                      |++   +...| |  .|+|.+..
T Consensus       400 lrS~~pls~~d-gp~eYTCrl~G  421 (486)
T PHA03273        400 MQSRRPLSEEN-GEREYSCIIEG  421 (486)
T ss_pred             eeccccccccC-CceeEEEEEee
Confidence            666   33333 5  89998864

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.83  E-value=0.0043  Score=45.83  Aligned_cols=65  Identities=15%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             CCCCceEEE-Eeee-CCCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          2 AGEGGNVTI-FCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l-~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      +.+|+.+.+ .|.+ .|.|+++|+|+.+..... ........+|      .|.+..-..+|.-.+.|.+....-
T Consensus        13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            357888888 8887 556999999998743321 1222223344      366654555677789999987643

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.81  E-value=0.028  Score=53.21  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             EEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE--EeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCC
Q psy12061         45 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNG  121 (626)
Q Consensus        45 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v--~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~  121 (626)
                      |.|..+...++|.|.=...+..+.......+.|  +.+|.+...++   -+..|+...-.|.+.. .|.-.+.+.|++||
T Consensus       200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            999999999999999777666666555555555  66777644333   4789999999999887 45556889999999


Q ss_pred             EEec
Q psy12061        122 VRIG  125 (626)
Q Consensus       122 ~~~~  125 (626)
                      .++.
T Consensus       277 ~~V~  280 (486)
T PHA03273        277 KEVD  280 (486)
T ss_pred             eecc
Confidence            9998

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.79  E-value=0.0043  Score=45.97  Aligned_cols=71  Identities=11%  Similarity=0.118  Sum_probs=43.2

Q ss_pred             CCcEEEEEEecc-cCCcceeEEEeeCCEEecccc--CCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         96 HRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMD--LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        96 g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      |+.+.|.|.+.+ .|.|  .|+|+.++..+....  .............+.|.+..-...+...++|.|.+..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPP--QITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-E--EEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCe--EEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            789999997665 5544  669999998882111  0000111111123466666555556779999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.78  E-value=0.0019  Score=56.03  Aligned_cols=48  Identities=25%  Similarity=0.557  Sum_probs=42.9

Q ss_pred             CCCeeEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061         18 PKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus        18 p~p~i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      ..|.+.|.. +|+.|..++++.+...|.|.|.+...+++|.|+|..+-.
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            578999998 677888788999999999999999999999999998743

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.77  E-value=0.034  Score=52.82  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=59.9

Q ss_pred             cEEEccCCCCCCEEEEEEEEcCC-CC--ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEee
Q psy12061         44 NLLISPVSRDDSGIYSCTATNVH-GM--DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTH  119 (626)
Q Consensus        44 ~L~i~~v~~~d~G~Y~C~a~n~~-g~--~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~  119 (626)
                      .|.|.++...++|.|.=+..+.. +.  ......+.++..|.+...++   -+..|+...-.|.+.. .|.-.+.+.|++
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            39999999999999987765432 33  33445666667776544332   4789999999999987 455568899999


Q ss_pred             CCEEecc
Q psy12061        120 NGVRIGN  126 (626)
Q Consensus       120 ~~~~~~~  126 (626)
                      ||..+..
T Consensus       367 ng~~V~~  373 (566)
T PHA03269        367 NFGNIGK  373 (566)
T ss_pred             CCcccCc
Confidence            9999875

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.76  E-value=0.055  Score=50.77  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             EEEccCCCCCCEEEEEEEEcCCCCcee--eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCC
Q psy12061         45 LLISPVSRDDSGIYSCTATNVHGMDES--KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNG  121 (626)
Q Consensus        45 L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~  121 (626)
                      |.|..++...+|.|.=..-+..+....  ...+..+.+|.+...++   -+..|+...-.|.+.. .|.-.+.+.|++||
T Consensus       184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH---AVLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            999999999999999998776665443  34555566777644433   4678999999999887 45456789999999


Q ss_pred             EEecc
Q psy12061        122 VRIGN  126 (626)
Q Consensus       122 ~~~~~  126 (626)
                      .++..
T Consensus       261 ~~V~~  265 (466)
T PHA03270        261 DEVFA  265 (466)
T ss_pred             ccccC
Confidence            99864

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.76  E-value=0.0061  Score=45.20  Aligned_cols=62  Identities=11%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             ceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          6 GNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         6 ~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      ..+.+.|.+. |.|+++|+|+++..... ........+|      .|.+..-..+|...|+|.|.+....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            5678999885 66999999999822110 1111122233      3666544556666899999987543

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.72  E-value=0.01  Score=45.63  Aligned_cols=81  Identities=17%  Similarity=0.276  Sum_probs=56.5

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCC--cceeEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE--FYYTEYEVKV  366 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~p~~~Y~~~v  366 (626)
                      .+|.++++.... -...|.|++.+   .......|.|+|+..+...|.......  +.....+.++..  .+...|.+||
T Consensus        23 p~P~nv~~~s~n-f~~iL~W~~~~---~~~~~~~ytVq~~~~~~~~W~~v~~C~--~i~~~~Cdlt~~~~~~~~~Y~~rV   96 (107)
T PF01108_consen   23 PAPQNVTVDSVN-FKHILRWDPGP---GSPPNVTYTVQYKKYGSSSWKDVPGCQ--NITETSCDLTDETSDPSESYYARV   96 (107)
T ss_dssp             SSCEEEEEEEET-TEEEEEEEEST---TSSSTEEEEEEEEESSTSCEEEECCEE--EESSSEEECTTCCTTTTSEEEEEE
T ss_pred             CCCCeeEEEEEC-CceEEEeCCCC---CCCCCeEEEEEEEecCCcceeecccee--cccccceeCcchhhcCcCCEEEEE
Confidence            588899987653 56899999832   234567899999977788888763221  223345556553  3678999999


Q ss_pred             EEecCCCCC
Q psy12061        367 QAINDVGPG  375 (626)
Q Consensus       367 ~a~n~~g~~  375 (626)
                      +|......|
T Consensus        97 ~A~~~~~~S  105 (107)
T PF01108_consen   97 RAEVGNQTS  105 (107)
T ss_dssp             EEEETTEEE
T ss_pred             EEEeCCccC
Confidence            999765544

...

>TIGR00864 PCC polycystin cation channel protein

Probab=96.72  E-value=2.2  Score=51.23  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=94.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC-EEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~-~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +..|+.++|.+.+...+...+.|..++ .+..       ...+......-..-..-...-.|.|..+.......+.|..+
T Consensus      1879 ~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~-------~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864      1879 AAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV-------LQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred             ccCCCEEEEEEEecCCCceEEEEEeCCCCcee-------ecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe
Confidence            457999999999877778899999864 2221       11221111212223344446678888888777777777655


Q ss_pred             CceeeeCCCce-EEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         81 PSYYEQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        81 p~~~~~~~~~~-~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      =.-+....... .+..|+..+|.-.+....+  +.+.|+.+-..+....       .+...+......   ....|.|..
T Consensus      1952 V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~--V~f~W~f~~~~~~g~~-------~~~~~G~~vty~---~~~~G~~~I 2019 (2740)
T TIGR00864      1952 VRGLQIPDCCAAGIATGEEKNFTANVQRGKP--VAFAWTFDLHHLHGDS-------LVIHMGKDVSYT---AEAAGLLEI 2019 (2740)
T ss_pred             ccceEecCCcccceecCceEEEEEEEecCCc--eEEEEEeeecccCCCc-------ceeecCCceEEc---cCCCcEEEE
Confidence            23333222212 2688999999999865543  6789986543333221       111111122221   246787776


Q ss_pred             E--EEeCCCceEEEEEEEEeCCC
Q psy12061        160 V--VKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       160 ~--a~n~~g~~~~~~~l~v~~~P  180 (626)
                      .  |.|..|..+....+.|+.+.
T Consensus      2020 ~v~A~N~l~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864      2020 QLGAFNALGAENITLQLEAQDAL 2042 (2740)
T ss_pred             EEEEEcccCcccccEEEEEEehe
Confidence            5  56888887777777777554

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.70  E-value=0.15  Score=47.62  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=82.3

Q ss_pred             CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCCCcEEE---cc---CC-----cEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSGGRRKI---FE---NG-----NLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~~~~~~---~~---~g-----~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      +-+|+...-.|.+... |+-  .+.|++||.++.......-   ..   +|     +|.+.+...+..=..+|.+.=..+
T Consensus       257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence            4579999999999776 443  8999999999864321111   11   12     244443322233378998874333


Q ss_pred             CceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe
Q psy12061         68 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT  147 (626)
Q Consensus        68 ~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  147 (626)
                      ......  .-...|.....|.-.+....|   ...|++...|. .+.+.|..++.............+-.....+...|+
T Consensus       337 ~v~s~r--nAaatP~VY~~P~ISv~FedG---~AVCtA~CVP~-gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLr  410 (490)
T PHA03271        337 DMISTT--NATAIPTVYHHPRISLAFKDG---YAICTIECVPS-GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLI  410 (490)
T ss_pred             Cceeee--ecccCCccccCCeEEEEEeCC---EEEEeccccCC-CcEEEEEecCCCCCCcccccccccccCCCCCceeee
Confidence            222221  222333333322222333334   35688888885 689999976655432210000011111223455565


Q ss_pred             e-cCCCCC---EeEEEEEEe
Q psy12061        148 N-ASFADA---GEYECVVKS  163 (626)
Q Consensus       148 ~-~~~~d~---g~Y~C~a~n  163 (626)
                      + ...+|.   -.|+|++..
T Consensus       411 S~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        411 SRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             ccCCchhcCCceeEEEEEee
Confidence            5 333433   489998864

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.63  E-value=0.0068  Score=45.15  Aligned_cols=60  Identities=22%  Similarity=0.478  Sum_probs=38.1

Q ss_pred             CceEEEEeeeCCC-CCC-eeEEEeCCEEccCCCc--EEEcc-CCc------EEEccCCCCCCEEEEEEEEcC
Q psy12061          5 GGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGR--RKIFE-NGN------LLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         5 G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~~~--~~~~~-~g~------L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      ++.++|.|.+.|. |.. +|+|+|||.. ..+-.  -.+.. +|+      |.|..-.......|.|.+...
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~   86 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP   86 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence            5679999999996 554 8999999998 32210  01222 443      444433222356799999765

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=96.62  E-value=0.0022  Score=60.13  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             CCCCCceEEEEeeeCCCCCCeeEEEe---CCEEccCC-----CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          1 YAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p~i~W~~---~~~~i~~~-----~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      |+-.|+++.++|-+.|.|.+.|.|.+   |+..+...     ++..+.+-..|.|-+....|+|.|+|.|.|..|-....
T Consensus       207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rd  286 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRD  286 (560)
T ss_pred             hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecc
Confidence            46789999999999999999999997   43333211     33333444579999999999999999999999998888


Q ss_pred             EEEEEEe
Q psy12061         73 GRLIVLH   79 (626)
Q Consensus        73 ~~l~v~~   79 (626)
                      +.+.+..
T Consensus       287 v~c~s~~  293 (560)
T KOG4597|consen  287 VPCSSVK  293 (560)
T ss_pred             ceeeeec
Confidence            7666644

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.61  E-value=0.0086  Score=43.91  Aligned_cols=65  Identities=20%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             CCCCceEEEEeeeCCC-CC--CeeEEEeCCEEccCCCcEEE------ccC-CcEEEccCCCCCCE-EEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCNPEAA-PK--PKFVWKKDGNIIGSGGRRKI------FEN-GNLLISPVSRDDSG-IYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~--p~i~W~~~~~~i~~~~~~~~------~~~-g~L~i~~v~~~d~G-~Y~C~a~n~~g   67 (626)
                      ..+|+.+++.|.+.+. |.  .+|.|+|+...+.+..-...      ... -.+.|.- +.+|.| .|.|.|.-..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            4789999999999765 55  58999998877753321110      001 1366665 466666 89999985543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.60  E-value=0.01  Score=45.04  Aligned_cols=74  Identities=8%  Similarity=0.084  Sum_probs=47.7

Q ss_pred             CCceEEecCCcEEEEEEecccCCcc-eeEEEeeCCE-Eeccc-------cCCccCCCeeEe------cCCeEEEeecCCC
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLD-VAYIWTHNGV-RIGNM-------DLNELETPNINI------DGGLLEITNASFA  152 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~-~~i~W~~~~~-~~~~~-------~~~~~~~~~~~~------~~~~l~i~~~~~~  152 (626)
                      +....+..|..++|.|.+.+..... ..+.|.|... .+..-       ........++..      +.-.|.|.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3456678899999999998876666 7789997321 21110       011011222221      1227999999999


Q ss_pred             CCEeEEEEE
Q psy12061        153 DAGEYECVV  161 (626)
Q Consensus       153 d~g~Y~C~a  161 (626)
                      |++.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.53  E-value=0.0045  Score=48.13  Aligned_cols=83  Identities=13%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             ecCCcEEEEEEecc---cCCcceeEEEeeCCEEeccccCCcc-------CCCee---EecCCeEEEeecCCCCCEeEEEE
Q psy12061         94 AAHRNLQLRCSAHT---EELLDVAYIWTHNGVRIGNMDLNEL-------ETPNI---NIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        94 ~~g~~~~l~C~~~~---~p~p~~~i~W~~~~~~~~~~~~~~~-------~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .=.+++.|.|.+..   ...+.+.|.|.++|..+-..+-...       .+..+   .-++-+|.+...+.- .|+|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            45689999999976   3445678999999988753310000       00000   012335888775444 8999999


Q ss_pred             EEeCCCceEEEEEEEEe
Q psy12061        161 VKSTVGKISTKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~  177 (626)
                      +.......+..+.|...
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99888888888887753

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.51  E-value=0.013  Score=45.08  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCC--CCceEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLS--PGKRYHMRVL  572 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~~~Y~~~V~  572 (626)
                      .+|.++++...+ ....|.|++  +. ....-..|.|+|+......+.... .-.+-..+.+.++...  +...|.+||+
T Consensus        23 p~P~nv~~~s~n-f~~iL~W~~--~~-~~~~~~~ytVq~~~~~~~~W~~v~-~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~   97 (107)
T PF01108_consen   23 PAPQNVTVDSVN-FKHILRWDP--GP-GSPPNVTYTVQYKKYGSSSWKDVP-GCQNITETSCDLTDETSDPSESYYARVR   97 (107)
T ss_dssp             SSCEEEEEEEET-TEEEEEEEE--ST-TSSSTEEEEEEEEESSTSCEEEEC-CEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred             CCCCeeEEEEEC-CceEEEeCC--CC-CCCCCeEEEEEEEecCCcceeecc-ceecccccceeCcchhhcCcCCEEEEEE
Confidence            478999988765 569999995  22 223445799999833333211110 0233355778887644  6889999999


Q ss_pred             EEecCCCCC
Q psy12061        573 AFSNGGDGR  581 (626)
Q Consensus       573 a~~~~G~g~  581 (626)
                      |......|+
T Consensus        98 A~~~~~~S~  106 (107)
T PF01108_consen   98 AEVGNQTSD  106 (107)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCccCC
Confidence            998765443

...

>KOG4806|consensus

Probab=96.51  E-value=0.35  Score=44.05  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=70.0

Q ss_pred             EEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec---CCCCCCCCceEEEeee--CCCEEEEEEeecCCCCCCCceee
Q psy12061        454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY---RKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIG  528 (626)
Q Consensus       454 ~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~---~~~p~~~p~~l~~~~~--~~~~~~l~W~~~~~~~~~~~i~~  528 (626)
                      +.-..+.++..|..+++..|.... +..-.+...|.   .+.|. .|.+-++..+  ..+++++.|.. .++   ..+ .
T Consensus       286 ~~Qfvv~~~~~~~~rf~~~ndde~-~~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~g-s~d---~~~-k  358 (454)
T KOG4806|consen  286 IRQFVVLPGERYLMRFEPSNDDEA-LQKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNG-SPD---EEL-K  358 (454)
T ss_pred             eeEEEecCCCceEEEEEecCCchh-hheeEeeeecccccCcCCC-CCCCceEeeeccccchheeeecc-Ccc---hhe-e
Confidence            334567788999999999886532 21111222222   22343 6777776655  67899999994 222   122 4


Q ss_pred             EEEEEEEeccCCc---------cc------c-----------ceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12061        529 YKVRVWEVDQDMS---------RA------N-----------DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM  582 (626)
Q Consensus       529 Y~i~~~~~~~~~~---------~~------~-----------~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~  582 (626)
                      |=|+.+...+...         ..      .           .......+...-+|.||.||..|.+.|.|.-..|..-+
T Consensus       359 yCIy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp  438 (454)
T KOG4806|consen  359 YCIYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP  438 (454)
T ss_pred             EEEEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence            6664433322100         00      0           00011123344568899999999999999888765543


Q ss_pred             C
Q psy12061        583 S  583 (626)
Q Consensus       583 s  583 (626)
                      -
T Consensus       439 y  439 (454)
T KOG4806|consen  439 Y  439 (454)
T ss_pred             c
Confidence            3

>PHA02633 hypothetical protein; Provisional

Probab=96.50  E-value=0.0084  Score=38.98  Aligned_cols=39  Identities=33%  Similarity=0.379  Sum_probs=32.8

Q ss_pred             CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061         42 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus        42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|-|-++..+|+|.|.|+..|..-....++.|.|...
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            446999999999999999999988777777888888553

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.37  E-value=0.17  Score=47.66  Aligned_cols=115  Identities=18%  Similarity=0.262  Sum_probs=67.6

Q ss_pred             CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCC----CcEEEccCCcEEEccCCCCCCE------EEEEEEEc-CCC
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSG----GRRKIFENGNLLISPVSRDDSG------IYSCTATN-VHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~----~~~~~~~~g~L~i~~v~~~d~G------~Y~C~a~n-~~g   67 (626)
                      +-+|+...-.|.+... |+-  .+.|++||.++..-    .......+|-..+..++.++.+      ..+|.+.= ..+
T Consensus       231 vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~  310 (466)
T PHA03270        231 VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS  310 (466)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence            4579999999999775 443  89999999998642    2223334552333334444332      67998873 333


Q ss_pred             Cceee----EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061         68 MDESK----GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        68 ~~~~~----~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~  126 (626)
                      ...+.    +.-.|+.+|.+      ++....|   ...|++...|. .+.+.|..++.....
T Consensus       311 vS~sR~nAa~~P~VY~~P~I------sv~F~dG---~AVCtA~CVPe-gV~l~W~V~D~~~pa  363 (466)
T PHA03270        311 VSFSRRNATGAPTVLPRPTI------EMEFGGD---EAVCTAACVPE-GVTLAWLLGADPAPA  363 (466)
T ss_pred             ccceeecccccCccccCCeE------EEEEeCC---EEEEeccccCC-CCEEEEEecCCCCCC
Confidence            22222    22233333322      2223333   35688888886 689999977665543

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=96.09  E-value=0.061  Score=40.59  Aligned_cols=84  Identities=19%  Similarity=0.382  Sum_probs=57.4

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceee-----EEEEeCCCcceeE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI-----AVVRIPSEFYYTE  361 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~p~~~  361 (626)
                      |+..|.++.........+++.|++  ....+.+ ..|.+.|...+ ..|+............     ..+...+..-.+.
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~--g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~   82 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEP--GSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP   82 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEE--ESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeC--CCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence            446788899888888999999998  4444433 34999999887 6666654432221122     3344445666899


Q ss_pred             EEEEEEEecCCCC
Q psy12061        362 YEVKVQAINDVGP  374 (626)
Q Consensus       362 Y~~~v~a~n~~g~  374 (626)
                      |.++|.|.|..|.
T Consensus        83 y~i~V~a~~~~~~   95 (104)
T PF09067_consen   83 YCIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEEETTEE
T ss_pred             EEEEEEeccCCCc
Confidence            9999999998775

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>KOG4228|consensus

Probab=96.09  E-value=0.022  Score=60.27  Aligned_cols=224  Identities=15%  Similarity=0.140  Sum_probs=136.7

Q ss_pred             eeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCC
Q psy12061        293 RIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV  372 (626)
Q Consensus       293 ~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~  372 (626)
                      ...+......++...|.....     ....|.+.++..... +......     ....+....+.+...|.+  .+.|..
T Consensus        30 ~~~vt~~~~~~~~~~~~~~~t-----~~~~y~v~~~~~~s~-~~~~~~~-----~~~~~s~~~~~~~~~~~~--~evnt~   96 (1087)
T KOG4228|consen   30 TPNVTGSTATSWVQAELLGST-----WPNYYQVIFKALSSG-YGYIDVD-----LTTRLSYPCLSPPSFLEL--VEVNTI   96 (1087)
T ss_pred             CcccccccccceeehhhccCC-----ChhhhheeeeEeccC-cceeecc-----ceeecccCCCCCcchhhh--hhcccc
Confidence            344445566778888887332     345567766655433 3322221     222345566666666666  888888


Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.+..+.+..-++.+..+...+..............++|..+....                                  
T Consensus        97 ~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------------------  142 (1087)
T KOG4228|consen   97 GRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATV----------------------------------  142 (1087)
T ss_pred             cccccccccCCccccccccccccchhhhhhhhhhhccCcccccccc----------------------------------
Confidence            8888877776666666555455555554455555666666543110                                  


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEE
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR  532 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~  532 (626)
                                     .+.+....|.++.+..+.+.|.+..|..++     ......+++++|.++    ....+..|.+.
T Consensus       143 ---------------~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~----~~~~~~~ykl~  198 (1087)
T KOG4228|consen  143 ---------------GPLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPP----HAVSLDTYKLL  198 (1087)
T ss_pred             ---------------cccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCC----Ccccchhhhhh
Confidence                           066666667776677777888888777554     445667899999842    34566778886


Q ss_pred             EEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEee
Q psy12061        533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~  591 (626)
                      +...+..    ................++.|-..|.++..+....+.+.....+...+.
T Consensus       199 ~~~~d~~----~~~~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~  253 (1087)
T KOG4228|consen  199 HLDPDTG----YEISVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL  253 (1087)
T ss_pred             hcCCccc----ceeeeeccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence            5544332    222223334445556688888899999988888777765533333333

>PHA02633 hypothetical protein; Provisional

Probab=96.05  E-value=0.02  Score=37.31  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      ....|.|.++..+|+|.|.|...|..--...++.|.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            556899999999999999999998766666677777654

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.05  E-value=0.017  Score=43.04  Aligned_cols=62  Identities=18%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             CCceEEEEeeeCCC--CC-CeeEEEeCCEEccCC-CcEEEccCCc------EEEccCCCCCCEEEEEEEEcCC
Q psy12061          4 EGGNVTIFCNPEAA--PK-PKFVWKKDGNIIGSG-GRRKIFENGN------LLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         4 ~G~~~~l~C~~~g~--p~-p~i~W~~~~~~i~~~-~~~~~~~~g~------L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      .++.++|.|.+.|.  |. ..|.|.+||.. ... .......+|+      |.|..-...-...|+|.+....
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            46789999999984  54 39999999875 211 1111122443      5544222233346999997653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03269 envelope glycoprotein C; Provisional

Probab=95.82  E-value=0.21  Score=47.73  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=81.9

Q ss_pred             CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCC---CcEEEccCCc------EEEccCCCCC--CEEEEEEEE-cCC
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSG---GRRKIFENGN------LLISPVSRDD--SGIYSCTAT-NVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~---~~~~~~~~g~------L~i~~v~~~d--~G~Y~C~a~-n~~   66 (626)
                      |-+|+...-.|.+... |+-  .+.|++||.+|...   .......+|.      |.+......|  -=..+|.+. ...
T Consensus       339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD  418 (566)
T PHA03269        339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD  418 (566)
T ss_pred             cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence            4589999999999775 443  89999999999742   2223344552      3332211111  234599887 333


Q ss_pred             CCceee----EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC
Q psy12061         67 GMDESK----GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG  142 (626)
Q Consensus        67 g~~~~~----~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  142 (626)
                      +.....    +.-.|+..|.+      ++....|   ...|++...|.-.+.+.|..++......+.  ...+-.....+
T Consensus       419 sVS~tRfnAaatP~VY~~PtI------Sm~FedG---~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t--~itG~C~ehPG  487 (566)
T PHA03269        419 GVSHMKYSAAVTPDVYPFPNV------SIEIIDG---HIVCLAKCVPRGVVHFNWWINDIPIEHENS--EILGVCDNNKR  487 (566)
T ss_pred             CchheecccccCCccccCCeE------EEEEeCC---EEEEecccccCCCceEEEEecCCCCCCccc--eeeccCCCCCC
Confidence            332222    22233333322      2233333   456888888876678999977666433211  00111112334


Q ss_pred             eEEEee---cCCCC-CEeEEEEEEe
Q psy12061        143 LLEITN---ASFAD-AGEYECVVKS  163 (626)
Q Consensus       143 ~l~i~~---~~~~d-~g~Y~C~a~n  163 (626)
                      ...|++   +...| --.|+|++..
T Consensus       488 LVNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        488 FVNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             ceeecccccccccCCceeEEEEEee
Confidence            556666   33333 2489998753

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=95.75  E-value=1.1  Score=38.41  Aligned_cols=137  Identities=19%  Similarity=0.305  Sum_probs=72.1

Q ss_pred             eeEEEeCCEEccCC---CcEEEccCC------cEEEccC-CCCCCEEEEEEEEcCCCC-ceeeEEEEEEeCCceeeeCCC
Q psy12061         21 KFVWKKDGNIIGSG---GRRKIFENG------NLLISPV-SRDDSGIYSCTATNVHGM-DESKGRLIVLHGPSYYEQLPP   89 (626)
Q Consensus        21 ~i~W~~~~~~i~~~---~~~~~~~~g------~L~i~~v-~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~~~~~~~~   89 (626)
                      .+.|++||.++...   .+.+...+|      +|.+... ..+..=..+|.+.=.... .....  .-...|....  +.
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~--~a~~~P~Vy~--~P   83 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF--NATATPSVYP--KP   83 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe--ecccccceec--CC
Confidence            78999999988743   333444455      3666322 223445689988733332 22222  1112333332  22


Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC--CCCE--eEEEEEEe
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF--ADAG--EYECVVKS  163 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g--~Y~C~a~n  163 (626)
                      .+++.- ..-...|.+...|...+.+.|..++....... .....+-.....+...|.+...  ...|  +|+|.+..
T Consensus        84 ~vsv~F-~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~-~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G  159 (211)
T PF02124_consen   84 RVSVRF-EDGYAVCTARCVPRGNVTLRWSVGDDPSPAPA-ATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG  159 (211)
T ss_pred             EEEEEe-cCCEEEEEcceeeCCCeEEEEEECCccCCCCC-ceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence            334433 44567899999887778999998776542111 0000111111234455554422  2244  89998864

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.67  E-value=0.54  Score=43.81  Aligned_cols=116  Identities=21%  Similarity=0.277  Sum_probs=76.4

Q ss_pred             CCCceEEEEeeeCC--C-CCCeeEEEeCCEEccC-----------------CCcEEEc---------cCCcEEEccCCCC
Q psy12061          3 GEGGNVTIFCNPEA--A-PKPKFVWKKDGNIIGS-----------------GGRRKIF---------ENGNLLISPVSRD   53 (626)
Q Consensus         3 ~~G~~~~l~C~~~g--~-p~p~i~W~~~~~~i~~-----------------~~~~~~~---------~~g~L~i~~v~~~   53 (626)
                      ..|.+|.|.|..+-  + ...+++|+-.|-++.+                 ++.+.+.         .+.+|+|.++..+
T Consensus       277 ~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~  356 (500)
T PHA02914        277 EVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHIN  356 (500)
T ss_pred             ccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEE
Confidence            35999999999843  3 4458999987666531                 1222221         1347999999999


Q ss_pred             CCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEE--ecC-CcEEEEEEecccCCcceeEEEeeCCEEeccc
Q psy12061         54 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI--AAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGNM  127 (626)
Q Consensus        54 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v--~~g-~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~  127 (626)
                      .+|=|.|.|..+.-......-|.|..         +-+..  .+| ......|-+.......+++.|..+|......
T Consensus       357 N~GCY~~~a~~g~~~~ec~~Cl~V~d---------~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~  424 (500)
T PHA02914        357 NAGCYEAQAFMGKFKEECRHCFKVAD---------HVFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE  424 (500)
T ss_pred             cCCceEEEEecCcchhhhhhheEecc---------EEEEEEEeccCceEEEEEEEEecccCCceeEEEEccEEecCe
Confidence            99999999987766566666666521         11111  133 3455677766653333578999999888654

>PHA03042 CD47-like protein; Provisional

Probab=95.39  E-value=0.051  Score=47.63  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=47.1

Q ss_pred             CCCceEEEEeeeCCC-----CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          3 GEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      .-.+++.+.|.++.-     -.-.+.|+.|+..+-..+..   +..+|.+.... .=.|+|+|.|.+.+.+......|.-
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEeccc-cCCCceeEEEeecccCccEEEEEEE
Confidence            457899999999652     24479999999877432221   11346665433 4489999999987666555555544

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.23  E-value=0.078  Score=38.70  Aligned_cols=60  Identities=20%  Similarity=0.503  Sum_probs=44.5

Q ss_pred             CCCCceEEEEeeeCCC-----CCCeeEEEeCCEEccCCCcEEEccCC--cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~~~~~~~~~~~g--~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +..|+.++..|.....     ....|.|+.|+..| +.+++..+.++  +++|.+.+...+-.|.|.-
T Consensus        15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            4679999999999543     45699999999955 66788888777  5788888777777888875

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02982 hypothetical protein; Provisional

Probab=95.04  E-value=0.48  Score=39.81  Aligned_cols=115  Identities=13%  Similarity=0.267  Sum_probs=69.7

Q ss_pred             CCCceEEEEeeeCCC-CCCeeEEEeCCE-EccC------------------CCcEEEcc---CCcEEEccCCCCCCEEEE
Q psy12061          3 GEGGNVTIFCNPEAA-PKPKFVWKKDGN-IIGS------------------GGRRKIFE---NGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~p~i~W~~~~~-~i~~------------------~~~~~~~~---~g~L~i~~v~~~d~G~Y~   59 (626)
                      ..|+.|.|+|..... -.....|++++. -+.+                  ...+.+.-   ..+|+|.++..+..|=|+
T Consensus        37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYt  116 (251)
T PHA02982         37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFT  116 (251)
T ss_pred             cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceE
Confidence            468999999996433 334889998442 2220                  01122222   236999999999999999


Q ss_pred             EEEEcCCCC-ceeeEEEEEEeCCceeeeCCCceEEecC-CcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061         60 CTATNVHGM-DESKGRLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        60 C~a~n~~g~-~~~~~~l~v~~~p~~~~~~~~~~~v~~g-~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~  126 (626)
                      |.|....+. .....-|.|.....++       ...++ ....+.|-+-....+-+  .|..+|.....
T Consensus       117 c~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp--~W~V~GVvttG  176 (251)
T PHA02982        117 CEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVP--RFIVAGIVTTG  176 (251)
T ss_pred             EEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCc--cEEEeeEEecC
Confidence            999986654 3335556552222111       22333 34566777665443322  79999886543

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=94.89  E-value=0.12  Score=38.96  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCcc-----ceEEecCCCCCceE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT-----LDADIVDLSPGKRY  567 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~L~p~~~Y  567 (626)
                      |++-|.++.....+...++--|+  +.+..+.. +.|.+.|...+....+.........+.     ..|.-.+..-...|
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~--~g~~~~l~-~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y   83 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWE--PGSEGNLP-TNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY   83 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEE--EESSSTST-CEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred             CCCCCccCccCCCCCCcEEEEee--CCCCCCCC-CcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence            45678899999889999999999  44444433 339998887652211111111112222     33444578888999


Q ss_pred             EEEEEEEecCCC
Q psy12061        568 HMRVLAFSNGGD  579 (626)
Q Consensus       568 ~~~V~a~~~~G~  579 (626)
                      .++|.|.|..|.
T Consensus        84 ~i~V~a~~~~~~   95 (104)
T PF09067_consen   84 CIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEeccCCCc
Confidence            999999998763

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>PHA02982 hypothetical protein; Provisional

Probab=94.89  E-value=0.4  Score=40.24  Aligned_cols=123  Identities=13%  Similarity=0.278  Sum_probs=74.9

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccc-----cCCcc--------CC--CeeEecCCeEEEeecCCCC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNM-----DLNEL--------ET--PNINIDGGLLEITNASFAD  153 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~-----~~~~~--------~~--~~~~~~~~~l~i~~~~~~d  153 (626)
                      ++....++.+.|.|.......- .+..|+++ +..+...     .++..        .-  ..+....++|+|.++..+.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i-~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEI-SRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchh-hhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            4566789999999995544332 35689974 4444411     11110        00  1122356799999999999


Q ss_pred             CEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEee
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS  229 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~  229 (626)
                      .|=|+|.+....+..+.-              -+|..+..+.+.+.|.. .++...+.-|..++..+ -..|...+
T Consensus       112 ~GCYtc~~ks~~~k~E~c--------------~kCl~V~~~~V~~~W~e-~nNeT~V~CyVgS~~~d-vp~W~V~G  171 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETC--------------EKCLEIQKEDILYVVEE-HNNETIITCFVGSKHGD-VPRFIVAG  171 (251)
T ss_pred             CCceEEEEecCCCchhee--------------heeeeEecceEEEEEEe-cCCeEEEEEEEEeccCC-CccEEEee
Confidence            999999998876654321              12445556788999995 34445555555554433 13565543

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=94.68  E-value=0.38  Score=35.03  Aligned_cols=80  Identities=13%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      -|+...|..|+++.+.|...... |. .+-|...  ...+...           .....+.|.+++. | ..-.|.+.-.
T Consensus         9 ~P~~~vV~~G~Sv~VNCStsC~~-p~-~~GLET~L~k~~~~~g-----------~~W~~f~LsnV~~-d-s~~~C~~~C~   73 (91)
T PF03921_consen    9 SPEEPVVPPGGSVWVNCSTSCPQ-PE-KIGLETSLSKTELDSG-----------PQWKAFQLSNVTE-D-SSPLCFFNCS   73 (91)
T ss_dssp             ESSEEEEETTEEEEEEEEESSSS--S-EEEEESSSEEEEEEEE-----------TTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred             ECCccEECCCCCEEEEEcCCCCC-CC-cceEEEecCCcccCCC-----------CcEEEEEEEcccc-C-CeEEEEEEcC
Confidence            57788999999999999986543 32 2344432  2222111           1234788899975 4 6788999877


Q ss_pred             CCceEEEEEEEEeCCCC
Q psy12061        165 VGKISTKTTVIVEGPPG  181 (626)
Q Consensus       165 ~g~~~~~~~l~v~~~P~  181 (626)
                      ..+..+++.|+|+.+|.
T Consensus        74 g~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   74 GEQSSASANITVYKPPE   90 (91)
T ss_dssp             TEEEEEEEEEEEEB--S
T ss_pred             CeEEEeEEeeEEeCCCC
Confidence            66778899999998874

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.65  E-value=0.15  Score=37.78  Aligned_cols=36  Identities=33%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             CCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEE
Q psy12061         42 NGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIV   77 (626)
Q Consensus        42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v   77 (626)
                      +-+|.|..++..|+|.|...+.+..|... ..+.+.|
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            45799999999999999999999988853 3355555

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03042 CD47-like protein; Provisional

Probab=94.33  E-value=0.26  Score=43.41  Aligned_cols=71  Identities=14%  Similarity=0.291  Sum_probs=48.5

Q ss_pred             cCCcEEEEEEeccc---CCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061         95 AHRNLQLRCSAHTE---ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus        95 ~g~~~~l~C~~~~~---p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      =.+++.+.|.+..-   ...++.+.|+.|++.+-..+      +.   +..+|.+... ..-.|+|+|.|.+........
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n------~t---n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~   99 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKN------NT---NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNT   99 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEec------CC---cceEEEEecc-ccCCCceeEEEeecccCccEE
Confidence            46899999998763   12346789999999886542      11   3345666553 345899999998876666666


Q ss_pred             EEEE
Q psy12061        172 TTVI  175 (626)
Q Consensus       172 ~~l~  175 (626)
                      ++|.
T Consensus       100 IeLk  103 (286)
T PHA03042        100 IELQ  103 (286)
T ss_pred             EEEE
Confidence            6655

>PHA03282 envelope glycoprotein E; Provisional

Probab=94.26  E-value=2.5  Score=40.58  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             cCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061         41 ENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus        41 ~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      .|++|.|.+++.+|+|.|...+......
T Consensus       122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~  149 (540)
T PHA03282        122 VNGTLVLREARETDSGMYVLSVSRAPNS  149 (540)
T ss_pred             ecceEEEeeccccCCceEEEEecCCCCc
Confidence            4788999999999999999997544333

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.18  E-value=0.19  Score=37.47  Aligned_cols=69  Identities=12%  Similarity=0.070  Sum_probs=37.5

Q ss_pred             CCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         96 HRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        96 g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .....+.|.+. +.|.+  +|+|+++............ ......-.+.|.+......|.-.|+|++.+..-.
T Consensus        15 ~~~~va~C~s~~gkP~a--~ItW~~~~~~~~~~~~~~~-~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSANGKPPA--TISWETTLGGEAETQSKEN-PNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECCCCcCCC--EEEEEeCCCCcceeEeecC-CCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            34678899985 56655  5699997111110000000 0111112345666555555566999999887643

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.03  E-value=0.39  Score=35.64  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=42.8

Q ss_pred             CceEEecCCcEEE-EEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         89 PKITIAAHRNLQL-RCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        89 ~~~~v~~g~~~~l-~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      ....+..|+.+.+ .|.+.+ .|.+  .|.|+.+.............++ ...-.+.|.+......|.-.++|.+....
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa--~IsW~~~~~G~~~~~~~~~~ng-T~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAA--DVTWETNVYGTSESHSQEHPNG-TTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCC--EeEEeCCCCCccceeeecCCCC-CEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            4456788999999 888765 4444  6699987332221100000111 22233456665555566779999998653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=93.92  E-value=0.51  Score=35.07  Aligned_cols=68  Identities=18%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             EEEEEEecccCCccee--EEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         99 LQLRCSAHTEELLDVA--YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        99 ~~l~C~~~~~p~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ..+.+...-...+...  ++|..+........  ..+.-.+...+-.|.|..++..|+|.|...+.+..|..
T Consensus        28 ~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~--~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V   97 (108)
T PF11465_consen   28 YSVQWKMQLPSQKKFEVILTWKNDSTPSYNSS--FNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV   97 (108)
T ss_dssp             EEEEEEEEETSSSEEE-EEEEETTEEEESSTT--HHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred             EEEEEEEEcccCCceEEEEEEcCCCccccccc--ccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcE
Confidence            3466655543333333  56776665554321  11123344578899999999999999999999999986

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG1026|consensus

Probab=93.77  E-value=0.14  Score=52.96  Aligned_cols=157  Identities=16%  Similarity=0.180  Sum_probs=97.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE-EEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~-~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +..|..+++.|.+.+.|-|.+.|+.++......... .+..+-...+.+        +.|.+.|..|.....+.+.+..+
T Consensus       204 v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p  275 (774)
T KOG1026|consen  204 VEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVDLP  275 (774)
T ss_pred             hcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEecc
Confidence            567899999999999999999999987766542211 111111222222        89999999999888888877665


Q ss_pred             CceeeeC-CCceEEecCCcEEEEEEec---ccCCcceeEEEeeCCEEeccccCCccCCCeeEecC--CeEEEeecCCCCC
Q psy12061         81 PSYYEQL-PPKITIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG--GLLEITNASFADA  154 (626)
Q Consensus        81 p~~~~~~-~~~~~v~~g~~~~l~C~~~---~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~  154 (626)
                      +...... +.+.        .=.|...   ++|.+  ..+|..++..+...+..     ......  .-+.....+-.+.
T Consensus       276 ~~~~~~~~~~~~--------~~~C~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-----~~t~s~~~~C~~~~~~~h~~~  340 (774)
T KOG1026|consen  276 KAEVLLCSPLSD--------HHNCIPIGITANPGP--ALHWCYNGSGLNYRGTV-----CVTKSGKEQCLPWNDPPHSHN  340 (774)
T ss_pred             cccccCCCCccc--------cCceeeeeccCCCCC--ceeeeecCccceEeccc-----ccccccCcCCcccCcCccccc
Confidence            4433211 1111        2223322   34444  33798887776543211     111111  3333334456788


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      |.|.|++.+..|.........+...|.
T Consensus       341 ~~~~~~~e~~~g~~~~r~~g~~~~~P~  367 (774)
T KOG1026|consen  341 GNYTLFPELPGGKNYCRNPGGFMSRPW  367 (774)
T ss_pred             CcceeeecccCccccccCcCccccCCC
Confidence            999999999999887777666666663

>KOG4806|consensus

Probab=93.77  E-value=1.5  Score=40.26  Aligned_cols=124  Identities=19%  Similarity=0.240  Sum_probs=69.7

Q ss_pred             CcceeEEEEEEEEecCCCCCCCCccEEEE---ccCCCCCCCCCceEEEee--ecceEEEEeeeccccccccceeeEEEEE
Q psy12061        356 EFYYTEYEVKVQAINDVGPGPESEVVTIF---SAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIGHRI  430 (626)
Q Consensus       356 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~---t~~~~p~~~p~~~~~~~~--~~~si~l~W~~~~~~~~~~~~~i~~Y~v  430 (626)
                      +.++..|.++++..|....- ....+...   |..+.|. -|++.++..+  +.++.+|.|.-..+..       ..|.|
T Consensus       291 v~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~gs~d~~-------~kyCI  361 (454)
T KOG4806|consen  291 VLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNGSPDEE-------LKYCI  361 (454)
T ss_pred             ecCCCceEEEEEecCCchhh-heeEeeeecccccCcCCC-CCCCceEeeeccccchheeeeccCcchh-------eeEEE
Confidence            45778899999988865421 11111122   2234555 6777766654  5678999998655431       24666


Q ss_pred             EEEecCCCcc------------------ceE---EEEe------cCccceEEEeCCccCceEEEEEEEeeCCCCCCCCcc
Q psy12061        431 KYWKEDNPEE------------------TAV---YYLS------RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER  483 (626)
Q Consensus       431 ~~~~~~~~~~------------------~~~---~~~~------~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~  483 (626)
                      +.......+.                  ...   +...      ..+-..-+|.+|.|+..|.+-|.|.-..|..-+-..
T Consensus       362 y~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa  441 (454)
T KOG4806|consen  362 YVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQA  441 (454)
T ss_pred             EEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccccee
Confidence            6544332110                  000   0111      001123468899999999999999887776443333


Q ss_pred             EEEee
Q psy12061        484 YLERT  488 (626)
Q Consensus       484 ~~~~t  488 (626)
                      +.+.|
T Consensus       442 ~~v~t  446 (454)
T KOG4806|consen  442 LTVHT  446 (454)
T ss_pred             EEEEe
Confidence            44443

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=93.67  E-value=0.91  Score=46.96  Aligned_cols=130  Identities=17%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             ecCccceEEEeCCccCceEEEEEEEeeCCCCC-CCCccEEEeec-CCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCC
Q psy12061        447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG-PESERYLERTY-RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE  524 (626)
Q Consensus       447 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s-~~s~~~~~~t~-~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~  524 (626)
                      .......+.+.+|-+ ..|.++|+|.|..|.. ++.....|... ...|+..+..+...... -.+.|.|-  .|. ..-
T Consensus       655 ~rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~--dPt-~~~  729 (952)
T COG4733         655 PRTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVG--DPT-GAV  729 (952)
T ss_pred             ccccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEe--cCC-cce
Confidence            344455688999988 6999999999998864 33324444333 23333333333333222 35677887  332 222


Q ss_pred             ceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        525 PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       525 ~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      .+..=.+++ ....+.... ....-........-.+|++|..|.|+++++|..|...+-
T Consensus       730 d~~~sei~~-s~~~d~~~~-Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~  786 (952)
T COG4733         730 DITSTEIRS-AVIADGNFQ-ARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW  786 (952)
T ss_pred             EEeeeeeee-eccccchhH-HhhhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence            222222221 111111110 001111111111115999999999999999999976644

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=93.57  E-value=0.27  Score=36.51  Aligned_cols=71  Identities=10%  Similarity=0.040  Sum_probs=38.2

Q ss_pred             CcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEE
Q psy12061         97 RNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST  170 (626)
Q Consensus        97 ~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~  170 (626)
                      ....+.|.+.+ .|.+  .|+|+++......... .........-.+.|.+......|.-.|+|++.+..-....
T Consensus        16 ~~~va~C~s~~gkPaa--~IsW~~~~~g~~~~~~-~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~   87 (95)
T cd07703          16 PVPVAKCVSANGRPPA--RISWSSTLGGNANTTS-KENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ   87 (95)
T ss_pred             ccEEEEEEcCCCCCCc--EEEEEcCCCCCeeEEE-EeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence            46889998775 5544  6699997221111000 0000111112235666555555666999999987644333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.57  E-value=1.2  Score=32.51  Aligned_cols=66  Identities=18%  Similarity=0.301  Sum_probs=40.7

Q ss_pred             CCceEEecCCcEEEEEEecccCC---cceeEEEeeCCEEeccccCCccCCCeeEecCC--eEEEeecCCCCCEeEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEEL---LDVAYIWTHNGVRIGNMDLNELETPNINIDGG--LLEITNASFADAGEYECV  160 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~  160 (626)
                      |+...+..|+++++.|.......   ..-.|.|+.|+..+..+       ....++++  .+++.++....+-.|-|.
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-------qy~~in~~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-------QYRVINDTVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-------CEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-------HcceeCCeEEEEEEccCCCCCceEEEEE
Confidence            45567899999999999986533   33467999999977664       33334444  455555544444466665

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=93.43  E-value=0.51  Score=32.31  Aligned_cols=28  Identities=32%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             eEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        555 DADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       555 ~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      .+.+.+|.||+ |.|.|+|.+..|.....
T Consensus        30 ~~~~~~L~~G~-Y~l~V~a~~~~~~~~~~   57 (66)
T PF07495_consen   30 SISYTNLPPGK-YTLEVRAKDNNGKWSSD   57 (66)
T ss_dssp             EEEEES--SEE-EEEEEEEEETTS-B-SS
T ss_pred             EEEEEeCCCEE-EEEEEEEECCCCCcCcc
Confidence            89999999997 99999999998765544

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=92.97  E-value=1.4  Score=45.68  Aligned_cols=124  Identities=12%  Similarity=0.037  Sum_probs=62.5

Q ss_pred             eeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCccc-CCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcce
Q psy12061        244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY  322 (626)
Q Consensus       244 ~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~-~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~  322 (626)
                      ..+.+.+ +.+ ..|..+|+|.|..|.......+..+. ..+..|+..+..+...... -.+.+.|--  |. ....+..
T Consensus       660 ~~~~~~g-i~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~d--Pt-~~~d~~~  733 (952)
T COG4733         660 AGFDVEG-IPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGD--PT-GAVDITS  733 (952)
T ss_pred             cceeecC-cCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEec--CC-cceEEee
Confidence            3455655 666 78999999999998665444222222 2333343333333332221 345566654  21 1111222


Q ss_pred             EEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        323 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       323 y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                      -.+++....+......   ...+.......-.+|.++..|.|+++++|..|...
T Consensus       734 sei~~s~~~d~~~~Ar---~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~  784 (952)
T COG4733         734 TEIRSAVIADGNFQAR---SLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND  784 (952)
T ss_pred             eeeeeeccccchhHHh---hhhccccccccccCcCCCceEEEEeeecccccccc
Confidence            2222222222211100   01111111122257999999999999999999754

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=92.72  E-value=2.4  Score=31.93  Aligned_cols=83  Identities=16%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             CceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec-CccceEEecCCCC----CceEEEEE
Q psy12061        497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTLDADIVDLSP----GKRYHMRV  571 (626)
Q Consensus       497 p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~p----~~~Y~~~V  571 (626)
                      |++|+....+...+.-+|.+  -.... .-+.|.++|+................ +......+.....    ...|.|.|
T Consensus         2 ~~nlsC~~~~~~~m~CtW~~--g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V   78 (99)
T PF09240_consen    2 PQNLSCFIYNLEYMNCTWEP--GKEAP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV   78 (99)
T ss_dssp             -EEEEEEEETTTEEEEEEEC--CTTCS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred             CeeCEEEEECCEEEEEEECC--CCCCC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence            67899888899999999983  22222 33579999888664322222222222 3456666666555    24799999


Q ss_pred             EEEecCCCCCC
Q psy12061        572 LAFSNGGDGRM  582 (626)
Q Consensus       572 ~a~~~~G~g~~  582 (626)
                      .+.+..|.-..
T Consensus        79 ~~ss~~~~i~~   89 (99)
T PF09240_consen   79 NGSSSAGSIRS   89 (99)
T ss_dssp             EEEETTEEEEC
T ss_pred             EeccCCCccCC
Confidence            99998775543

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>KOG4597|consensus

Probab=92.67  E-value=0.16  Score=48.27  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEee---CCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTH---NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      |....+..|++.++.|-+.|.+.+.|  +|.+   |+..+....-.+. ..-...+...|.|-+....|+|.|+|.+.|.
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~r~V--~c~qv~anr~~vv~~~nq~~-e~p~vtstcql~ic~ewq~~a~w~tCs~rcg  279 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQYRVV--TCEQVFANRENVVMRPNQTV-ENPVVTSTCQLVICNEWQADAGWYTCSARCG  279 (560)
T ss_pred             cchhhcccchhhcccccccCCcCcee--eeehhhccccceeecCcccc-CCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence            34557788999999999999998755  8875   4433322111111 1122236678999999999999999999999


Q ss_pred             CCceEEEEEEEE
Q psy12061        165 VGKISTKTTVIV  176 (626)
Q Consensus       165 ~g~~~~~~~l~v  176 (626)
                      .|.....+.+.+
T Consensus       280 ~g~~~rdv~c~s  291 (560)
T KOG4597|consen  280 AGFLRRDVPCSS  291 (560)
T ss_pred             cceeeccceeee
Confidence            998877776654

>PLN02533 probable purple acid phosphatase

Probab=92.54  E-value=0.96  Score=44.86  Aligned_cols=87  Identities=22%  Similarity=0.291  Sum_probs=49.9

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc-ccce-e-------eecCccceEEecCCCC
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR-ANDT-I-------IPVGNTLDADIVDLSP  563 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~-~~~~-~-------~~~~~~~~~~l~~L~p  563 (626)
                      .+..|+.+++...+.+++.|+|.  ...... ..    |+|-........ .... .       ...+....+.|.+|+|
T Consensus        40 ~~~~P~qvhls~~~~~~m~V~W~--T~~~~~-~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p  112 (427)
T PLN02533         40 DPTHPDQVHISLVGPDKMRISWI--TQDSIP-PS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP  112 (427)
T ss_pred             CCCCCceEEEEEcCCCeEEEEEE--CCCCCC-CE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence            34468899988778999999999  333222 22    333221111000 0000 0       0112335678999999


Q ss_pred             CceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        564 GKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       564 ~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      ++.|.++|-      ....| +...|++.+
T Consensus       113 ~T~Y~Yrvg------~~~~s-~~~~F~T~p  135 (427)
T PLN02533        113 NTVYYYKCG------GPSST-QEFSFRTPP  135 (427)
T ss_pred             CCEEEEEEC------CCCCc-cceEEECCC
Confidence            999999983      12223 556787764

>PHA03052 Hypothetical protein; Provisional

Probab=91.98  E-value=0.38  Score=32.02  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=24.8

Q ss_pred             CCCCceEEEEeee---CCCCCCeeEEEeCCEEc
Q psy12061          2 AGEGGNVTIFCNP---EAAPKPKFVWKKDGNII   31 (626)
Q Consensus         2 ~~~G~~~~l~C~~---~g~p~p~i~W~~~~~~i   31 (626)
                      +.-|+.++|.|.|   .|...+.|.|.-|+..+
T Consensus         9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             EEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            4569999999998   34456799999999988

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=91.42  E-value=24  Score=38.30  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCC--CCCceeeEEEEEEEeccCCccccce-e---------eecCcc--ceEEe
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSF--EEEPIIGYKVRVWEVDQDMSRANDT-I---------IPVGNT--LDADI  558 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~--~~~~i~~Y~i~~~~~~~~~~~~~~~-~---------~~~~~~--~~~~l  558 (626)
                      ||..-.+|.+. .....|.|+|+  .|.+  ..|....|.|+|...-.+....... .         ...++.  ..+..
T Consensus       755 PP~rItDL~~~-~~~~~v~LsWT--APG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~  831 (863)
T TIGR00868       755 PPSKITDLEAG-FQGDNIILTWT--APGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKP  831 (863)
T ss_pred             CCccceeeEEe-ecCCEEEEEee--CCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeC
Confidence            33334455553 45566999999  5554  7889999999875432221000000 0         011222  23344


Q ss_pred             cCC--CCCceEEEEEEEEecCCC-CCCC
Q psy12061        559 VDL--SPGKRYHMRVLAFSNGGD-GRMS  583 (626)
Q Consensus       559 ~~L--~p~~~Y~~~V~a~~~~G~-g~~s  583 (626)
                      .+.  ..++.|.|-|+|++..|. |+.|
T Consensus       832 ~~~~~~~~~~~~~ai~a~d~~~~~s~~s  859 (863)
T TIGR00868       832 EGIPIENGTDLFIAVQAIDKANLTSEVS  859 (863)
T ss_pred             CcccccCCeEEEEEEEEEcccccccccc
Confidence            443  367889999999999873 4444

distributions. found a row in 1A13.INFO that was not parsed out

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.28  E-value=0.96  Score=32.25  Aligned_cols=63  Identities=24%  Similarity=0.273  Sum_probs=38.5

Q ss_pred             EEEEeeeCCCC-------CCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEE-EcCCCCceeeEEEEE
Q psy12061          8 VTIFCNPEAAP-------KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIV   77 (626)
Q Consensus         8 ~~l~C~~~g~p-------~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l~v   77 (626)
                      -.|.|...+--       .+.+.|+-.+..+.       .....+........|+|...|.| .+..-.......|.|
T Consensus         8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~-------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen    8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSL-------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEEESECEEETTTECEEEEEECSSCEEE-------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             CEeeeeeEEEEEcCCCCCChhheeeccCcccc-------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            35777774433       45788886654332       12233566777889999999999 444333444455544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03283 envelope glycoprotein E; Provisional

Probab=91.05  E-value=9.6  Score=37.61  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceee--------eCC------------CceEEecCCcEEEEE
Q psy12061         44 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE--------QLP------------PKITIAAHRNLQLRC  103 (626)
Q Consensus        44 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--------~~~------------~~~~v~~g~~~~l~C  103 (626)
                      .|.|.+++.+++|.|.-...+..+.....+.|.|..++....        ..|            ....-.+||++.+.-
T Consensus       135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi  214 (542)
T PHA03283        135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV  214 (542)
T ss_pred             eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence            499999999999999999998777555556677755221111        111            233556899988876


Q ss_pred             EecccC---CcceeEEEee
Q psy12061        104 SAHTEE---LLDVAYIWTH  119 (626)
Q Consensus       104 ~~~~~p---~p~~~i~W~~  119 (626)
                      ......   .-.++|.|+.
T Consensus       215 ~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        215 HLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EEeeccCCCCceEEEEEEE
Confidence            655432   2246788885

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.94  E-value=0.44  Score=44.16  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=18.1

Q ss_pred             eEEEEeeeCCC-CCC-eeEEEeC
Q psy12061          7 NVTIFCNPEAA-PKP-KFVWKKD   27 (626)
Q Consensus         7 ~~~l~C~~~g~-p~p-~i~W~~~   27 (626)
                      .++|.|.|.|. |.. .++|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999997 554 8999999

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=90.91  E-value=0.39  Score=42.27  Aligned_cols=44  Identities=27%  Similarity=0.541  Sum_probs=33.2

Q ss_pred             eeEEEeeC-CEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEe
Q psy12061        113 VAYIWTHN-GVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus       113 ~~i~W~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      ..+.|... |..+...       .++.+ .+|.|.+.+.+..++|.|+|..+-
T Consensus        13 P~y~W~GP~g~~l~gn-------~~~nIT~TG~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   13 PTYLWTGPNGKPLSGN-------SYVNITETGKLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CceEEECCCCcccCCC-------CeEEEccCceEEeeccccccCCceEEEEEE
Confidence            36789974 5555543       44443 778999999999999999998753

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03052 Hypothetical protein; Provisional

Probab=90.85  E-value=2.2  Score=28.56  Aligned_cols=40  Identities=23%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             CCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccc
Q psy12061         88 PPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNM  127 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~  127 (626)
                      |..+.+..|..++|.|.+.- .+.....+.|.-|+..+...
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~   44 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED   44 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence            46778899999999999874 44445567899999998443

>PLN02533 probable purple acid phosphatase

Probab=90.07  E-value=6.8  Score=38.99  Aligned_cols=88  Identities=14%  Similarity=0.034  Sum_probs=51.5

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeee--e------ecceeeEEEEeCCCcc
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--E------YGNVGIAVVRIPSEFY  358 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~L~p  358 (626)
                      .+..|..+.+.-.+.+++.|+|....  .. .    -.|+|....+.-.....-.  .      ........+.|++|+|
T Consensus        40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~-~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p  112 (427)
T PLN02533         40 DPTHPDQVHISLVGPDKMRISWITQD--SI-P----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP  112 (427)
T ss_pred             CCCCCceEEEEEcCCCeEEEEEECCC--CC-C----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence            34567788877767889999999732  11 1    1466655432211111100  0      0111234567999999


Q ss_pred             eeEEEEEEEEecCCCCCCCCccEEEEccC
Q psy12061        359 YTEYEVKVQAINDVGPGPESEVVTIFSAE  387 (626)
Q Consensus       359 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  387 (626)
                      ++.|.|+|-.      ...+....++|.+
T Consensus       113 ~T~Y~Yrvg~------~~~s~~~~F~T~p  135 (427)
T PLN02533        113 NTVYYYKCGG------PSSTQEFSFRTPP  135 (427)
T ss_pred             CCEEEEEECC------CCCccceEEECCC
Confidence            9999999931      1235667777754

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=89.44  E-value=6.1  Score=29.74  Aligned_cols=80  Identities=24%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce-EEEE-ecCccceEEEeCCcc----CceEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA-VYYL-SRTTRNWALIVGLQP----DTKYY  466 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~L~p----~t~Y~  466 (626)
                      +|+++.....+...+..+|++......     -..|.++||......... .... ..+......+.....    ...|.
T Consensus         1 ~~~nlsC~~~~~~~m~CtW~~g~~~~~-----~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~   75 (99)
T PF09240_consen    1 KPQNLSCFIYNLEYMNCTWEPGKEAPP-----DTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYN   75 (99)
T ss_dssp             S-EEEEEEEETTTEEEEEEECCTTCST-----TEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEE
T ss_pred             CCeeCEEEEECCEEEEEEECCCCCCCC-----cccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEE
Confidence            367899988899999999987543322     247999998876443222 1222 222344455655555    34799


Q ss_pred             EEEEEeeCCCC
Q psy12061        467 VKVMAYNNAGE  477 (626)
Q Consensus       467 v~V~a~~~~g~  477 (626)
                      |.|.+.+..|.
T Consensus        76 v~V~~ss~~~~   86 (99)
T PF09240_consen   76 VCVNGSSSAGS   86 (99)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEeccCCCc
Confidence            99999888765

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=88.21  E-value=0.73  Score=46.48  Aligned_cols=167  Identities=15%  Similarity=0.131  Sum_probs=25.2

Q ss_pred             eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEE----EccCCcEEEccCCC-CCCEEEEEEEE-cCCCC--ceeeEEEEEE
Q psy12061          7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK----IFENGNLLISPVSR-DDSGIYSCTAT-NVHGM--DESKGRLIVL   78 (626)
Q Consensus         7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~----~~~~g~L~i~~v~~-~d~G~Y~C~a~-n~~g~--~~~~~~l~v~   78 (626)
                      .+.|.|...  -...+.|.....+..  ....    ......|.|+.-.+ .-...|...+. .....  ......+.|.
T Consensus         2 ~~~~~C~~~--~~~~y~W~~~~~~~~--~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~   77 (440)
T PF02010_consen    2 HVSLNCNDA--STVTYNWTVFSGPSN--SIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVE   77 (440)
T ss_dssp             ----------------BEEEEES-TT---EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE
T ss_pred             Ccccccccc--cceEEEEEEEecCCc--CccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEe
Confidence            467899332  245889996322210  1111    11224588888766 33456777777 22222  3334566665


Q ss_pred             eCCceeeeC-CCceEEecCCcEEEEEEecccCCc-----ceeEEEeeCCEEecccc-CCccCCCeeEecCCeEEEee--c
Q psy12061         79 HGPSYYEQL-PPKITIAAHRNLQLRCSAHTEELL-----DVAYIWTHNGVRIGNMD-LNELETPNINIDGGLLEITN--A  149 (626)
Q Consensus        79 ~~p~~~~~~-~~~~~v~~g~~~~l~C~~~~~p~p-----~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~--~  149 (626)
                      ..|...... .....+..++++.|.....-+|.-     .+++.|......-.... ...............|.|..  +
T Consensus        78 ~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l  157 (440)
T PF02010_consen   78 PSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTL  157 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHc
Confidence            544332221 122334445678888766555532     36788986543332000 00000011223455677743  3


Q ss_pred             CCCCCEeEEEEEEeCCC-ceEEEEEEEEe
Q psy12061        150 SFADAGEYECVVKSTVG-KISTKTTVIVE  177 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g-~~~~~~~l~v~  177 (626)
                      .....+.++..+....+ ..+....+.+.
T Consensus       158 ~~~~~y~f~ltv~k~~r~s~s~~~~v~v~  186 (440)
T PF02010_consen  158 SPGSTYTFTLTVSKGSRSSSSASQTVTVV  186 (440)
T ss_dssp             -----------------------------
T ss_pred             CCCceEEEEEEEEeCCCCceeeEEEEEec
Confidence            33444445555554444 33444444443

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=87.85  E-value=3.6  Score=30.22  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             eEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          7 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         7 ~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      ...|.+.+.+. .+.+.|+.||..+.....     ...+.   ......|.|+..+.+..|...+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~~~~---~~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GHQLF---WQPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCC-----CCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence            45555666555 459999999999942211     11122   3457889999999988887544

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=86.86  E-value=4.7  Score=29.51  Aligned_cols=73  Identities=22%  Similarity=0.358  Sum_probs=43.5

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeC--CEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKD--GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~--~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      |..|+.+.++|..+= |.| .+-|.-.  ...+..+....     ...+.+|+. | ..-.|.+.-......+++.|.|+
T Consensus        15 V~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~~W~-----~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ItVY   86 (91)
T PF03921_consen   15 VPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGPQWK-----AFQLSNVTE-D-SSPLCFFNCSGEQSSASANITVY   86 (91)
T ss_dssp             EETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEETTEE-----EEEEEEE-S-C-EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCCcEE-----EEEEEcccc-C-CeEEEEEEcCCeEEEeEEeeEEe
Confidence            568999999999853 334 4455431  11221111111     366788886 4 56789998764456778899998


Q ss_pred             eCCc
Q psy12061         79 HGPS   82 (626)
Q Consensus        79 ~~p~   82 (626)
                      .+|.
T Consensus        87 ~~Pe   90 (91)
T PF03921_consen   87 KPPE   90 (91)
T ss_dssp             B--S
T ss_pred             CCCC
Confidence            8774

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=85.56  E-value=2  Score=42.43  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=14.7

Q ss_pred             CCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEEEeCCce-------------------eeeCCCceEEecCCcEEE
Q psy12061         42 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSY-------------------YEQLPPKITIAAHRNLQL  101 (626)
Q Consensus        42 ~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~~-------------------~~~~~~~~~v~~g~~~~l  101 (626)
                      .|.|.|.+++.+|+|.|.-...+..+..... ..|.|..+...                   ....+....-..|+++.+
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~  167 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL  167 (439)
T ss_dssp             ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence            4569999999999999999999877765443 45555441111                   111124456678998877


Q ss_pred             EEEeccc----CCcceeEEEeeC
Q psy12061        102 RCSAHTE----ELLDVAYIWTHN  120 (626)
Q Consensus       102 ~C~~~~~----p~p~~~i~W~~~  120 (626)
                      .-.....    ++=.++|.|+.-
T Consensus       168 ~v~l~~~~~d~~~f~~~i~W~~~  190 (439)
T PF02480_consen  168 SVHLQSEAHDDPPFSLEIDWYYM  190 (439)
T ss_dssp             --EEEEEESSS--EEEEEEEEEE
T ss_pred             eEEEEeccCCCCCeeEEEEEEEe
Confidence            7665432    222567889863

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF14292 SusE: SusE outer membrane protein

Probab=84.71  E-value=14  Score=29.12  Aligned_cols=74  Identities=14%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             eEEEeeeCCCEEEEEEeecCCCCCCC-ceeeEEEEEEEeccCCccccceeeecCccceEEec-----------CCCCCce
Q psy12061        499 AVHIKGINPTTVHVTWRYVSPSFEEE-PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV-----------DLSPGKR  566 (626)
Q Consensus       499 ~l~~~~~~~~~~~l~W~~~~~~~~~~-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~L~p~~~  566 (626)
                      .+.........++++|+  ++..+.. -...|.|++...+.++.............++..+.           |+.||..
T Consensus        36 ~i~L~~~~~~a~tftW~--~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~  113 (122)
T PF14292_consen   36 SIVLDEASDNAVTFTWT--AADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEA  113 (122)
T ss_pred             eEEecccCCceEEEEEE--CCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCce
Confidence            34344345678999999  5554443 45579998766554433222211111113334433           6788888


Q ss_pred             EEEEEEEE
Q psy12061        567 YHMRVLAF  574 (626)
Q Consensus       567 Y~~~V~a~  574 (626)
                      ..+.+|..
T Consensus       114 ~~l~~rV~  121 (122)
T PF14292_consen  114 GTLYWRVK  121 (122)
T ss_pred             EEEEEEEE
Confidence            88777753

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=83.56  E-value=5.2  Score=37.40  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             cEEEEEEecccCCcceeEEEeeC
Q psy12061         98 NLQLRCSAHTEELLDVAYIWTHN  120 (626)
Q Consensus        98 ~~~l~C~~~~~p~p~~~i~W~~~  120 (626)
                      .++|.|.|.|-=+..|.+.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999996667899999999

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=83.24  E-value=11  Score=27.02  Aligned_cols=37  Identities=16%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             cCCeEEEeecCCCCCEeEEEEE-EeCCCceEEEEEEEE
Q psy12061        140 DGGLLEITNASFADAGEYECVV-KSTVGKISTKTTVIV  176 (626)
Q Consensus       140 ~~~~l~i~~~~~~d~g~Y~C~a-~n~~g~~~~~~~l~v  176 (626)
                      ....+.......+|+|...|.| .+..-..+....|.+
T Consensus        41 ~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   41 TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4456777888899999999999 555445555555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03189 UL14 tegument protein; Provisional

Probab=81.94  E-value=15  Score=33.39  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=46.9

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEE-----Ee----------eCCEEeccccCCccCCCeeEecC----CeEEEe
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYI-----WT----------HNGVRIGNMDLNELETPNINIDG----GLLEIT  147 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~-----W~----------~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~  147 (626)
                      +|..+.+..|+.+++.|.+....=|.+.|.     |.          ..|..+.+.-.+++...+.+..+    ..|+++
T Consensus        58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt  137 (348)
T PHA03189         58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT  137 (348)
T ss_pred             CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence            356677889999999999877655544432     21          12333333222233333333322    123332


Q ss_pred             -ecCCCCCEeEEEEEEeCCCce
Q psy12061        148 -NASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       148 -~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                       ++..+.+|.|.|...|.....
T Consensus       138 F~v~t~taG~Y~CvLrN~tHgl  159 (348)
T PHA03189        138 FRVSTSTAGMYECVLRNETHGL  159 (348)
T ss_pred             EEEEecccceEEEEecccccee
Confidence             445678999999999865443

>KOG1225|consensus

Probab=81.08  E-value=5.9  Score=39.82  Aligned_cols=155  Identities=17%  Similarity=0.156  Sum_probs=90.1

Q ss_pred             CCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEee
Q psy12061        394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN  473 (626)
Q Consensus       394 p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~  473 (626)
                      |..+....-+..++-+.|...        .....|...|.......... ..........+.+..|+|++.|.++++++-
T Consensus       369 ~~~~~~~~cs~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~  439 (525)
T KOG1225|consen  369 PSLLLITECSPPSLCIAGVGR--------RRVTHCAGTYCPLGESGGDL-QGRVPGDANSVDIQGLEPGDEYNCSVNTVA  439 (525)
T ss_pred             chhhcccccCCCceeeccccc--------cccccccccccccccCCCcc-ceeeccceeeeeeeeecCCcceeeehhhhh
Confidence            334444445566777777721        11334444443333222222 233345556688999999999999999875


Q ss_pred             CC-CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCc
Q psy12061        474 NA-GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN  552 (626)
Q Consensus       474 ~~-g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~  552 (626)
                      .. |..+....  ..+...    .+..+.+.....+++.+.|.  .|..   ...++.+.+ ......-  .........
T Consensus       440 ~~~~~~~~~~~--~~~~~~----~~g~~~v~~~~~~s~e~~g~--~~s~---~~~~~~~~~-~~~~~~~--~~~~~~~~~  505 (525)
T KOG1225|consen  440 ANIGSLPKDKS--ETTVLC----WNGGLCVDGETESSLEVGGP--CPSS---GTCGWEVRC-GPCGNDG--GVNAEPPPE  505 (525)
T ss_pred             hhhccCCcccc--cceEee----cCCceeeeeeeeccccccCC--CCCc---cccceEEEe-eecCccc--ccccCCCCC
Confidence            43 33333322  222222    35577788888899999998  3432   234577766 2222211  111222336


Q ss_pred             cceEEecCCCCCceEEEEE
Q psy12061        553 TLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       553 ~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .+.+...+|.|++.|.+.+
T Consensus       506 ~~~~~~~~l~~c~~~~~~~  524 (525)
T KOG1225|consen  506 CTSYDRTGLGPCTEYEVSV  524 (525)
T ss_pred             CCCCCccCcccccceeccc
Confidence            6788899999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	626
1cfb_A	205	Crystal Structure Of Tandem Type Iii Fibronectin Do		8e-15
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-11
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-11
1uen_A	125	Solution Structure Of The Third Fibronectin Iii Dom		2e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-09
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		8e-09
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		9e-09
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-08
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-08
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		1e-08
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-08
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-08
2ee2_A	119	Solution Structures Of The Fn3 Domain Of Human Cont		4e-08
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		8e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-07
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-07
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-07
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-07
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-07
2edx_A	134	Solution Structures Of The Fn3 Domain Of Human Rece		5e-07
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-06
3f7r_A	249	First Pair Of Fibronectin Type Iii Domains And Part		2e-06
3f7p_C	248	Crystal Structure Of A Complex Between Integrin Bet		2e-06
3f7q_A	234	First Pair Of Fibronectin Type Iii Domains And Part		2e-06
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-06
1qg3_A	195	Crystal Structure Of A Tandem Pair Of Fibronectin T		3e-06
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-06
2ed9_A	124	Solution Structure Of The Third Fibronectin Type Ii		4e-06
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		5e-06
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		6e-06
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		6e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		6e-06
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		3e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		3e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		4e-05
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		4e-05
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		5e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		5e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		5e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		5e-05
2edy_A	103	Solution Structures Of The Fn3 Domain Of Human Rece		9e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		9e-05
1x5h_A	132	The Solution Structure Of The Third Fibronectin Typ		1e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		2e-04
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		2e-04
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-04
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		3e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
2dlh_A	121	Solution Structure Of The Second Fn3 Domain Of Huma		5e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		7e-04
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		7e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		8e-04
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		8e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		9e-04

>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains From Drosophila Neuroglian At 2.0 Angstroms Length = 205

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 196 ATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVP 254
           A I W     N  PI HY I   T++  ++W    E V            ++S    + P
Sbjct: 21  AEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV---------PNTDSSFVVQMSP 71
Query: 255 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPRE 314
           W+ Y F+VIA N++G   PS+ S    T  D P++ P           +L ISW P+P  
Sbjct: 72  WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 315 KQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG 373
           + NAPN +Y + W++      +++  + ++    I +   P+   + +Y +KV AIND G
Sbjct: 132 EHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPT---FVKYLIKVVAINDRG 188
Query: 374 -PGPESEVVTIFSAED 388
                +E V  +S ED
Sbjct: 189 ESNVAAEEVVGYSGED 204

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           A +G  V + C     P P  +W++ DG  I    RR    NG L I    ++D+G Y C
Sbjct: 216 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-SNGILEIPNFQQEDAGSYEC 274
Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A N  G + +KG+L     P++  Q+   I +A   ++   C A+        Y W  N
Sbjct: 275 VAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 331
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
           G  +   D        I I+ G L IT  + +DAG Y+CV ++  G I
Sbjct: 332 GDPLLTRD-------RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 372

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           A +G  V + C     P P  +W++ DG  I    RR    NG L I    ++D+G Y C
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-SNGILEIPNFQQEDAGSYEC 275
Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A N  G + +KG+L     P++  Q+   I +A   ++   C A+        Y W  N
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 332
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
           G  +   D        I I+ G L IT  + +DAG Y+CV ++  G I
Sbjct: 333 GDPLLTRD-------RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 373

>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of Human Kiaa0343 Protein Length = 125

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
           ED+P VAP  V     NST   V W+P+ L  ++IRG L G+RI YWK  +  +    ++
Sbjct: 11  EDLPMVAPGNVRVNVVNSTLAEVHWDPVPL--KSIRGHLQGYRIYYWKTQSSSKRNRRHI 68
Query: 447 SRT------TRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
            +       ++   ++ GL+P + Y + V   N  GEGP S
Sbjct: 69  EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 9   TIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLL-ISPVSRDDSGIYSCTATN-V 65
           T  C  E+ P+P+  W ++  +I     R  I ENG LL I  V   D GIY CTA N V
Sbjct: 26  TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85
Query: 66  HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 125
            G  ES G L V   P      P  + I       L C+        V++I   + +R  
Sbjct: 86  GGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-E 143
Query: 126 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
           N  +  LE+       G L I N    DAG+Y CV K+++G   +K
Sbjct: 144 NSRIAVLES-------GSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P+P   W K+G         GG +  +   ++++  V   D G Y+C   
Sbjct: 34  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           N +G      +L V+    H P     LP   T+A   N++  C  +++    + ++  H
Sbjct: 94  NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL-KH 152
Query: 120 ---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEYECVVKSTVG 166
              NG +IG  +L     L+T  +N    +  +L + N SF DAGEY C+  +++G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P+P   W K+G         GG +  +   ++++  V   D G Y+C   
Sbjct: 35  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 94
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           N +G      +L V+    H P     LP   T+A   N++  C  +++    + ++  H
Sbjct: 95  NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL-KH 153
Query: 120 ---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEYECVVKSTVG 166
              NG +IG  +L     L+T  +N    +  +L + N SF DAGEY C+  +++G
Sbjct: 154 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           YA  G  VT+ C     P P+  W+K   + GS   +       L I  VS +D G Y C
Sbjct: 217 YALVGQQVTLECFAFGNPVPRIKWRK---VDGSLSPQWTTAEPTLQIPSVSFEDEGTYEC 273
Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A N  G D  +GR+IV   P + + +          NL+  C+A  +    V   W  N
Sbjct: 274 EAENSKGRDTVQGRIIVQAQPEWLKVI-SDTEADIGSNLRWGCAAAGKPRPTVR--WLRN 330
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
           G  + + +        + +  G L  +  S  D+G Y+CV ++  G I
Sbjct: 331 GEPLASQN-------RVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTI 371

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISP--VSRDDSGIY 58
           GG  +  C     PKP+  W K G  + S     I F++G    L I P  V RD++ IY
Sbjct: 21  GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 79
Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEELL------ 111
            CTATN  G   +  +L VL      EQLPP   +I     L++   A T  +L      
Sbjct: 80  ECTATNSLGEINTSAKLSVLE----EEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGN 135
Query: 112 -DVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
            D    W  + + +     N  + +L +       G L+I ++  +D G+YECV  ++ G
Sbjct: 136 PDPEISWFKDFLPVDPATSNGRIKQLRS-------GALQIESSEESDQGKYECVATNSAG 188

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +  +   ++++  V   D G Y+C   
Sbjct: 34  VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           N +G      +L V+    H P     LP   T+A   N++  C  +++    + ++  H
Sbjct: 94  NEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWL-KH 152
Query: 120 ---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEYECVVKSTVG 166
              NG +IG  +L     L+T  +N    +  +L + N SF DAGEY C+  +++G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           YA  G  VT+ C     P P+  W+K   + GS   + +     L I  V  +D G Y C
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRK---LDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A N+ G D  +GR+I+   P + + +       A     LR S         A  W  +
Sbjct: 275 EAENIKGRDTYQGRIIIHAQPDWLDVI---TDTEADIGSDLRWSCVASGKPRPAVRWLRD 331
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
           G  + + +        I + GG L  +     D+G Y+CV ++  G +
Sbjct: 332 GQPLASQN-------RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV 372

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 143/383 (37%), Gaps = 36/383 (9%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 53
           E G VT+ C+ E  P P+  WK+  DG     G     GR ++     + +L I  V   
Sbjct: 14  ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAHTEELLD 112
           DSG Y C A +  G  +    L + + P +       I  +   N + + C   +     
Sbjct: 74  DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPAS 131
Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
           +   W  + + +   +   L+T +      +LEI   S  D G Y C   + +G    + 
Sbjct: 132 IH--WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY 188
Query: 173 TXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEH 231
                               +T+A + +    +  G PI HY++  +   +  W  V  H
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 248
Query: 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
                     G +   + N L P +TYE +V A N  G G+ S        P  +P    
Sbjct: 249 ----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298
Query: 292 SRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVV 351
                       LSI+     ++   AP + Y + +R K D E Q    K  GN    ++
Sbjct: 299 IHGQPSSGKSFKLSIT----KQDDGGAPILEYIVKYRSK-DKEDQWLEKKVQGNKDHIIL 353
Query: 352 RIPSEFYYTE-YEVKVQAINDVG 373
                  +T  YEV++ A N +G
Sbjct: 354 E---HLQWTMGYEVQITAANRLG 373

>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1 Length = 119

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S V  I SA+D P  AP  V  +  +S+ I+V W   E + E I   +  ++I+Y
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHW---EHVLEKI---VESYQIRY 54
Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
           W   + EE A      +    A +  L PDT+Y+++V A N+AG GP S+  +E   +KA
Sbjct: 55  WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSD-MIEAFTKKA 113

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 57
           GG  + +C     P P  VW+K+G  + G+  R  + E       L I PV   RDD+  
Sbjct: 23  GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 81
Query: 58  YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
           Y C A N  G   S    + ++       G     Q P    I     + + C A     
Sbjct: 82  YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 141
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
            ++   W  N  ++      ++  P  ++  G L+I N+   D G+YECV ++++G   +
Sbjct: 142 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 193
Query: 171 KTT 173
           K T
Sbjct: 194 KAT 196

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 57
           GG  + +C     P P  VW+K+G  + G+  R  + E       L I PV   RDD+  
Sbjct: 21  GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 79
Query: 58  YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
           Y C A N  G   S    + ++       G     Q P    I     + + C A     
Sbjct: 80  YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
            ++   W  N  ++      ++  P  ++  G L+I N+   D G+YECV ++++G   +
Sbjct: 140 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 191
Query: 171 KTT 173
           K T
Sbjct: 192 KAT 194

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 3   GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYS 59
           GE G  T  C+       K  W KD   I  GG  K  + EN   L +  V++ D+G Y+
Sbjct: 212 GESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C A+NV G D    +L V   P + ++L P   +    + +  C        ++  +W  
Sbjct: 270 CYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYK 327
Query: 120 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
           +   I       ++ +E+        +LE+ N S  D+G+Y C
Sbjct: 328 DETEIQESSKFRMSFVESV------AVLEMYNLSVEDSGDYTC 364

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 3   GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYS 59
           GE G  T  C+       K  W KD   I  GG  K  + EN   L +  V++ D+G Y+
Sbjct: 20  GESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C A+NV G D    +L V   P + ++L P   +    + +  C        ++  +W  
Sbjct: 78  CYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYK 135
Query: 120 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
           +   I       ++ +E+  +      LE+ N S  D+G+Y C
Sbjct: 136 DETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--FENGN---LLISPV-SRDDSGIY 58
           GG  +  C     P+PK VW K G  + S  R ++  F++G+   L I P+ +  D  IY
Sbjct: 21  GGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIY 79
Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PKITIAAH-RNLQLRCSAHTEELLD 112
            C A+N  G      RL VL         P     P++ +    R   + C+A      +
Sbjct: 80  ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 113 VAYIWTHNGVRIGNMD--LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
           + +      V   N +  + +L + +I    G L+I  +  +D G+YECV  ++ G
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESI----GALQIEQSEESDQGKYECVATNSAG 191

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 3   GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYS 59
           GE G  T  C+       K  W KD   I  GG  K  + EN   L +  V++ D+G Y+
Sbjct: 20  GESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C A+NV G D    +L V   P + ++L P   +    + +  C        ++  +W  
Sbjct: 78  CYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYK 135
Query: 120 NGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
           +   I       ++ +E+  +      LE+ N S  D+G+Y C
Sbjct: 136 DETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISP--VSRDDSGIY 58
           GG  +  C     PKP+  W K G  + S     I F++G    L I P  V RD++ IY
Sbjct: 22  GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 80
Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLP---PKITIAAH-------RNLQLRCSAHTE 108
            CTATN  G   +  +L VL      +QLP   P I +          R   + C+A   
Sbjct: 81  ECTATNSLGEINTSAKLSVLE----EDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGN 136
Query: 109 ELLDVAYIWTHNGV--RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
              ++++      V     N  + +L +       G L+I ++  +D G+YECV  ++ G
Sbjct: 137 PDPEISWFKDFLPVDPAASNGRIKQLRS-------GALQIESSEESDQGKYECVATNSAG 189

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSC 60
           A EG +  + C     P P F W +   +I    ++  +    NLLIS V+ DDSG Y+C
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292
Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
             T  +    +   L VL  P ++   P  +      +++  C+   + +  V   W  N
Sbjct: 293 VVTYKNENISASAELTVLV-PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVN--WMKN 349
Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
           G  +   D  ++      + G  L I     +D G Y+CV ++  G
Sbjct: 350 GDVVIPSDYFQI------VGGSNLRILGVVKSDEGFYQCVAENEAG 389

>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 134

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
           S  +   +A+  P   PQ V      ST + V+W P      N  G +  + + Y   D 
Sbjct: 6   SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRN--GVITQYSVAYEAVDG 63
Query: 438 PEET--AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK 495
            +     V  +SR   +W L VGL+  T+Y V V A+ + G GPES   L RT    P  
Sbjct: 64  EDRGRHVVDGISREHSSWDL-VGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSG 122
Query: 496 PPSAV 500
           PP  V
Sbjct: 123 PPRKV 127

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 105/289 (36%), Gaps = 39/289 (13%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 53
           E G VT+ C+ E  P P+  WK+  DG     G     GR ++     + +L I  V   
Sbjct: 14  ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPS-------YYEQLPPKITIAAHRNLQLRCSAH 106
           DSG Y C A +  G  +    L + + P        YY      I I+         S H
Sbjct: 74  DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 107 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
                     W  + + +   +   L+T +      +LEI   S  D G Y C   + +G
Sbjct: 134 ----------WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 167 KISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTW 225
               +                     +T+A + +    +  G PI HY++  +   +  W
Sbjct: 183 TRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
             V  H          G +   + N L P +TYE +V A N  G G+ S
Sbjct: 243 KIVRSH----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281

>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The Connecting Segment Of The Integrin Beta4 Length = 249

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           APQ   ++   S  I+  W P         G+ +G+R+KYW + + E  A    S+    
Sbjct: 8   APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 59
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
              +  L P   Y +KV AY   GEGP S     RT+++ P + P  +    ++ T   +
Sbjct: 60  -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 117
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
           +W    P+     I  Y+V    V+ D
Sbjct: 118 SW--AEPAETNGEITAYEVCYGLVNDD 142

>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 248

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           APQ   ++   S  I+  W P         G+ +G+R+KYW + + E  A    S+    
Sbjct: 7   APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 58
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
              +  L P   Y +KV AY   GEGP S     RT+++ P + P  +    ++ T   +
Sbjct: 59  -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 116
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
           +W    P+     I  Y+V    V+ D
Sbjct: 117 SW--AEPAETNGEITAYEVCYGLVNDD 141

>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The Connecting Segment Of The Integrin Beta4 Length = 234

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           APQ   ++   S  I+  W P         G+ +G+R+KYW + + E  A    S+    
Sbjct: 8   APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 59
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
              +  L P   Y +KV AY   GEGP S     RT+++ P + P  +    ++ T   +
Sbjct: 60  -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 117
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
           +W    P+     I  Y+V    V+ D
Sbjct: 118 SW--AEPAETNGEITAYEVCYGLVNDD 142

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD-DSGIYSCTAT 63
           G  + + C     P    VW++D   +    ++K+F NG L+I  V R+ D   Y+C A 
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAK 600
Query: 64  NVHGMDESKGRL----IVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYI 116
           N  G   ++G L    +VL    P  +E+ P ++     + L L CS    +L L++   
Sbjct: 601 NQEGYS-ARGSLEVQVMVLPRIIPFAFEEGPAQV----GQYLTLHCSVPGGDLPLNID-- 653
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
           WT +G  I   DL  + T  +   G +L I     + AG + C  ++  G
Sbjct: 654 WTLDGQAISE-DLG-ITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701

>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii Domains From The Cytoplasmic Tail Of Integrin Alpha6 Beta4 Length = 195

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           APQ   ++   S  I+  W P         G+ +G+R+KYW + + E  A    S+    
Sbjct: 4   APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 55
Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
              +  L P   Y +KV AY   GEGP S     RT+++ P + P  +    ++ T   +
Sbjct: 56  -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 113
Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQD 539
           +W    P+     I  Y+V    V+ D
Sbjct: 114 SW--AEPAETNGEITAYEVCYGLVNDD 138

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPV-----SRD 53
           +G   T+ C  E  P P   W K G  + +        R +  +G+L    +     SR 
Sbjct: 23  KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 54  DSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS---AHTEE 109
           D G+Y C A N  G   S    L V      + Q P  + +A      + C     H E 
Sbjct: 83  DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP 142
Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
            +     W  +G  + + D        I I GG L IT    +DAG+Y CV  + VG+
Sbjct: 143 TIS----WKKDGSPLDDKD------ERITIRGGKLMITYTRKSDAGKYVCVGTNMVGE 190

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 32/181 (17%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
           GG  +  C     PKP+  W K G  + S     I F+      L I P+ +  D  IY 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYE 80
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKI----------TIAAHRNLQLRCSAHTEE 109
           C A N HG      +L VL      +QLPP             +   R   + C+A    
Sbjct: 81  CVAQNPHGEVTVHAKLTVLR----EDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
             D    W  + + +     N  + +L +       G L+I ++   D G+YECV  ++ 
Sbjct: 137 --DPEITWFKDFLPVDPSTSNGRIKQLRS-------GGLQIESSEETDQGKYECVASNSA 187
Query: 166 G 166
           G
Sbjct: 188 G 188

>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Netrin Receptor Dcc Length = 124

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 370 NDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHR 429
           N  GPG  ++ +T+ +  D+P   PQ V     NS +I V+W P     +N  G + G++
Sbjct: 8   NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQN--GFITGYK 65
Query: 430 IKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
           I++ K     E      +     W L  GL+  ++Y  +V A    G GP S  Y   T
Sbjct: 66  IRHRKTTRRGEMETLEPNNL---WYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 109/302 (36%), Gaps = 49/302 (16%)
Query: 7   NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKI--FENG--NLLISPVSRDDSGIYSCT 61
           N T+ C     PKP   W + G  II  G + +I  F+ G   L+I+ V+ DD+ +Y   
Sbjct: 21  NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 62  ATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           ATN  G       L V     +H P   E +     + A R   +          D    
Sbjct: 81  ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG---AVHALRGEVVSIKIPFSGKPDPVIT 137
Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-----------DAGEYECVVKSTV 165
           W          DL       I+ +G    I   SF            DAG Y    K+  
Sbjct: 138 WQK------GQDL-------IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 166 GKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATN-GRPITHYKIIARTNWNST 224
           G                          + S  + WT+ A++ G  IT+Y +         
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244
Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
           W  V +    +E  RYT      + N L   ++Y+F+VIA N+ G  +PS PS    T  
Sbjct: 245 WLRVGQ---ARET-RYT------VIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 285 DK 286
           DK
Sbjct: 294 DK 295

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 9   TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 61
           T+ C  E  P+P   W KDG  + +  +   R  F++G L     +      D G Y C 
Sbjct: 28  TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
           A N  G   S+   + +       ++ PK T  A     L      + + +   IW  +G
Sbjct: 88  AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 122 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 166
           V + ++       +  + I DGG L I+N    D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 9   TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 61
           T+ C  E  P+P   W KDG  + +  +   R  F++G L     +      D G Y C 
Sbjct: 28  TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
           A N  G   S+   + +       ++ PK T  A     L      + + +   IW  +G
Sbjct: 88  AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 122 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 166
           V + ++       +  + I DGG L I+N    D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 59
           A  G  +T  C    +P+P   W ++G +I     + I +  N  L +  +   D G Y 
Sbjct: 16  AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYV 74
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C ATN  G DE +  L V   P +  QL  + T   +  + L C A  E + ++ +    
Sbjct: 75  CRATNKAGEDEKQAFLQVFVQP-HIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 120 NGVRI--GNMDLNELETPNINIDG----GLLEITNASFADAGEYECVVKSTVG 166
           +G     G+  L+      I + G      L I +   +D+G Y+C   S +G
Sbjct: 133 DGFTFTEGDKSLD----GRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 7   NVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTA 62
            V   C     P P   W K+G         GG +   +  +L++  V   D G Y+C  
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 63  TNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
            N  G       L VL    H P     LP   T     +++  C  +++    + ++  
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL-K 258
Query: 119 H---NGVRIGNMD---LNELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVG 166
           H   NG ++G      +  L+T   N     LE+    N +F DAGEY C+  +++G
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           +G +VTI C     P P  VW  +   + SGGR  + ++G L+I  V   D G Y C AT
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSG-LVIKGVKNGDKGYYGCRAT 380
Query: 64  NVHG 67
           N HG
Sbjct: 381 NEHG 384

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG--NLLISPVSRDDSGIYS 59
           EG    + C     P P   W+ DG  +      K+   ENG  +L+I PV+  D+GIY+
Sbjct: 23  EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYT 82
Query: 60  CTATNVHGMDESKGRLIVL---HGPS 82
           C ATN  G +     L+V     GPS
Sbjct: 83  CIATNRAGQNSFSLELVVAAKESGPS 108

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 89  NEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
             NG + G   L     L+   +N     +E   I N +F DAGEY C+  +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 27  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 87  NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 146
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
             NG + G   L     L+   +N     +E   I N +F DAGEY C+  +++G
Sbjct: 147 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 201

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 28  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 87
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 88  NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 147
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
             NG + G   L     L+   +N     +E   I N +F DAGEY C+  +++G
Sbjct: 148 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 202

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 89  NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
             NG + G   L     L+   +N     +E   I N +F DAGEY C+  +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 89  NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
             NG + G   L     L+   +N     +E   I N +F DAGEY C+  +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 103

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 453
           PQ +   G  ++   + W+P  L   N  GR+I + + +   ++ +E      + TT   
Sbjct: 12  PQNLHVTGLTTSTTELAWDPPVLAERN--GRIISYTVVFRDINSQQELQ----NITTDTR 65
Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
             + GL+PDT Y +KV A+ + G GP S     RT
Sbjct: 66  FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 9   TIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 65
           T+ C     P P+  W KD   +    S GR K   +G L I      D G Y C ATN 
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 66  HGMDESKGRLI---VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
            G+  S    +   V +    +  LP    I    N+ + C A    +  V ++      
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ----- 241
Query: 123 RIGNMDLNELETPNINIDGG--LLEITNASFADAGEYECVVKSTVGKI 168
             G  DL    TP  ++  G  +LE+T+    D+  Y CV  S++G I
Sbjct: 242 --GAEDL----TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVI 281

>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Neogenin Length = 132

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
           V + +  D+P  APQ +     NS +I + W P     +N  G++ G++I+Y K     +
Sbjct: 9   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQN--GQITGYKIRYRKASRKSD 66
Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
                +S T  +  LI GL   T+Y  +V A    G GP ++     T+
Sbjct: 67  VTETLVSGTQLS-QLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF 114

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
           GG  +  C     PKP+  W K G  + S     I F+      L I P+ +  D  +Y 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIAAH-RNLQLRCSAHTEE 109
           C A N  G      +L VL      +QLP         P++ +    R   + C+A    
Sbjct: 81  CVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
             D    W  + + +     N  + +L +       G L+I ++   D G+YECV  ++ 
Sbjct: 137 --DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSA 187
Query: 166 G 166
           G
Sbjct: 188 G 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIYS 59
           GG  +  C     PKP+  W K G  + S     I F+      L I P+ +  D  +Y 
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIAAH-RNLQLRCSAHTEE 109
           C A N  G      +L VL      +QLP         P++ +    R   + C+A    
Sbjct: 81  CVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 110 LLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
             D    W  + + +     N  + +L +       G L+I ++   D G+YECV  ++ 
Sbjct: 137 --DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSA 187
Query: 166 G 166
           G
Sbjct: 188 G 188

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 18 PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGR 74
          P+P  +W KDG  I  GG+ K+ E+     L I      DSG+Y+CT  N  G   S  +
Sbjct: 34 PRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93
Query: 75 LIV 77
          L +
Sbjct: 94 LTI 96

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L+   V   D G Y+C   
Sbjct: 29  VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 88
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 89  NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 118 THNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 166
             NG + G   L     L+   +N     +E   I N +F DAGEY C+  +++G
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTA 62
           G ++ + C     P P   W K G  + S   +  FEN N  L I+ VS +DSG Y C A
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK--FENFNKALRITNVSEEDSGEYFCLA 294
Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
           +N  G       + V   P Y+   P  + +A   + +L C A+      V   W  NG 
Sbjct: 295 SNKMGSIRHTISVRVKAAP-YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ--WMVNGE 351
Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
            + +   N    PN  + G  +   +   +    Y+C
Sbjct: 352 PLQSAPPN----PNREVAGDTIIFRDTQISSRAVYQC 384

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 97  NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 118 THNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGK 167
             NG + G   L     L+   IN     +L + N + ADAGEY C V + +G+
Sbjct: 157 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFENGNLLISPVSRD 53
           YA  G NVT+ C     P P   W+K          I  SG   KIF         +  +
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFN--------IQLE 175
Query: 54  DSGIYSCTATNVHGMDESKGRLIV 77
           D GIY C A N+ G D+ + R+ V
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYV 199

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L++  V   D G Y+C   
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 97  NEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 118 THNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGK 167
             NG + G   L     L+   IN     +L + N + ADAGEY C V + +G+
Sbjct: 157 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210

>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human Receptor-Type Tyrosine-Protein Phosphatase Delta Length = 121

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP---IIGYKVR 532
           G    S   L +T  +AP   P  V  + ++ TT+ V W+       EEP   I GY+V 
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKE-----PEEPNGQIQGYRV- 54
Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
            + +D      N     V ++    I +L P K Y ++VLAF++ GDG +SS
Sbjct: 55  YYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSS 106

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENG--NLLISPVSRDDSGIY 58
           EG   T   +    P P+  W +DG +I +    G +  F +G   L I  V++ +SG Y
Sbjct: 19  EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRY 78
Query: 59  SCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           S  ATN  G   S   L+V      P++ ++L    ++   +  Q+R       +     
Sbjct: 79  SLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 116 IWTHNGVRI-GNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKIST 170
            +  +G  I  ++D        I+ +G L  L I  A   D+G Y     ++VG+ ++
Sbjct: 136 KFYRDGAEIQSSLDF------QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 14/174 (8%)
Query: 8   VTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           V   C     P P   W K+G         GG +   ++ +L+   V   D G Y+C   
Sbjct: 36  VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 95
Query: 64  NVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI--W 117
           N +G       L V+    H P     LP   +     +++  C  +++    + +I   
Sbjct: 96  NEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 155
Query: 118 THNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGK 167
             NG + G   L     L+   IN     +L + N + ADAGEY C V + +G+
Sbjct: 156 EKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 209

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 7   NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSRDDSGIYS 59
            +++ C  +  P P F W K   I G+  ++ +  N       G L+I     +DSG Y 
Sbjct: 235 TISLLCPAQGFPAPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 292
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C   N  G  ES   ++ +  P   +  PP  T+   R     C      +  V+  W  
Sbjct: 293 CVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMK 349
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
           +G  IG+ +              +L I +    D G Y+C V++
Sbjct: 350 DGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVRN 380

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 7   NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSRDDSGIYS 59
            +++ C  +  P P F W K   I G+  ++ +  N       G L+I     +DSG Y 
Sbjct: 229 TISLLCPAQGFPAPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286
Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C   N  G  ES   ++ +  P   +  PP  T+   R     C      +  V+  W  
Sbjct: 287 CVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMK 343
Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
           +G  IG+ +              +L I +    D G Y+C V++
Sbjct: 344 DGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVRN 374

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENG--NLLISPVSRDDSGIY 58
           EG   T   +    P P+  W +DG +I +    G +  F +G   L I  V++ +SG Y
Sbjct: 19  EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRY 78
Query: 59  SCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           S  ATN  G   S   L+V      P++ ++L    ++   +  Q+R       +     
Sbjct: 79  SLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 116 IWTHNGVRI-GNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKIST 170
            +  +G  I  ++D        I+ +G L  L I  A   D+G Y     ++VG+ ++
Sbjct: 136 KFYRDGAEIQSSLDF------QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	626
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-103
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-41
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-92
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-21
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-88
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-33
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-20
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-08
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	7e-65
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-29
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-24
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-61
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-14
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-07
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-54
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-26
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	2e-25
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	6e-10
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-49
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-31
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-47
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	6e-39
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-26
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	9e-08
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	4e-47
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-37
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-22
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-11
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	4e-46
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	4e-17
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	6e-46
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-30
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	9e-22
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-15
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-44
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-42
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-18
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	1e-07
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	7e-40
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	1e-25
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	6e-18
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	7e-06
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	9e-38
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	4e-23
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	8e-17
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	9e-07
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	1e-37
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	3e-21
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	7e-14
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	4e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-35
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-33
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-31
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-29
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-14
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-36
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-19
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	3e-13
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	8e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-34
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-32
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-29
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-36
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-33
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-19
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-35
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	6e-31
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	5e-25
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-15
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	2e-35
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	6e-23
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	3e-20
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	8e-14
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	2e-09
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-34
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-09
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-33
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	3e-18
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-12
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-33
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-32
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-24
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	9e-33
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	1e-20
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-11
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	5e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-32
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-17
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-05
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	3e-32
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	5e-21
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	3e-20
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	2e-11
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	3e-09
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	5e-32
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	6e-08
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-07
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-31
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-30
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-27
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-17
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-31
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	4e-17
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	6e-15
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-31
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-25
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-31
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-16
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-07
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-31
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-30
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-17
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-30
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-29
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-25
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-30
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-16
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-30
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-30
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-30
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-29
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-22
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-30
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-30
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-29
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-20
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-29
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-22
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-29
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-09
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-05
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	4e-29
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	3e-18
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	1e-14
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	3e-06
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-28
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-22
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-28
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	9e-28
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	6e-24
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-13
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	4e-09
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-28
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-28
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-26
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-28
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-23
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-28
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-25
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-28
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-26
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-24
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-27
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-20
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-27
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-23
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-27
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	8e-27
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	3e-16
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	6e-12
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	3e-07
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-26
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-22
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-26
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-26
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-26
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-26
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-10
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-26
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-26
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-26
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-14
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	6e-26
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-09
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-25
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-25
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-25
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	6e-25
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-23
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	7e-12
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	7e-08
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-25
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	5e-24
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-20
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-12
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-25
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-25
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-23
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-24
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	8e-19
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-14
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	4e-12
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-09
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	4e-24
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-09
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	4e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-24
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	5e-24
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	2e-06
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	5e-04
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	2e-23
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	2e-08
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	3e-08
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	7e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-23
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-20
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-23
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	4e-23
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	3e-11
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	7e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-23
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-14
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	7e-23
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	1e-20
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	4e-11
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	2e-08
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	7e-23
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	2e-07
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	3e-05
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	8e-04
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-22
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	9e-16
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	7e-09
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	2e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-22
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-15
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-22
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-20
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-11
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	2e-22
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	3e-08
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	3e-04
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	7e-04
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	3e-22
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	5e-21
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	8e-13
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	2e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-10
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	5e-22
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	4e-15
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	9e-10
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	3e-07
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	6e-22
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	5e-08
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	8e-22
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	1e-14
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-11
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	2e-10
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-21
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-21
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-21
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	5e-11
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	3e-09
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	3e-08
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-21
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-11
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	3e-21
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	5e-10
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	2e-09
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	2e-05
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	7e-21
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	2e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-07
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-20
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	3e-14
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-11
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-20
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-20
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-13
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-20
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-20
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-20
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-20
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-20
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-20
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-09
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	9e-20
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-17
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	6e-13
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	3e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-19
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-19
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-09
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	3e-19
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	7e-13
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	1e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-19
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	5e-19
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	5e-10
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	6e-08
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	4e-07
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-19
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-19
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-19
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-08
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	8e-19
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-10
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	9e-19
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-14
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-10
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	6e-08
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	7e-07
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-18
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-13
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-10
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	2e-18
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	5e-18
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	5e-15
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-18
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	1e-13
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-18
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-06
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	3e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-18
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-10
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-05
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-18
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-09
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	9e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-10
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-17
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-07
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	4e-17
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	5e-14
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	6e-13
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	5e-09
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-17
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-08
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-07
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-06
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	4e-17
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	6e-15
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-12
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	4e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-17
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-08
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	5e-17
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	1e-14
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	1e-11
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	3e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	9e-07
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	6e-17
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	2e-06
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-05
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-04
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	7e-17
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-09
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	6e-09
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	3e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-08
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	2e-16
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	6e-06
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-16
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	8e-07
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-05
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	2e-16
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	2e-16
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	3e-12
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	2e-07
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-16
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	3e-15
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	7e-15
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	4e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-16
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-06
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	3e-16
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	6e-06
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	2e-05
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	7e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-16
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-07
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	5e-16
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-11
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	3e-10
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	4e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-09
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	9e-16
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	1e-13
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	3e-13
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-15
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-11
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	1e-15
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	1e-11
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	8e-11
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	1e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-15
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	1e-15
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	4e-07
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	1e-06
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	3e-04
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-15
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-06
2crz_A	110	Fibronectin type-III domain containing protein 3A;	7e-06
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-15
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	4e-15
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	4e-07
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	5e-07
2ens_A	96	Advanced glycosylation END product-specific recept	5e-15
2ens_A	96	Advanced glycosylation END product-specific recept	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	8e-15
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	6e-10
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	5e-07
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	1e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-14
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-08
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	2e-14
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	6e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-13
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-13
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-06
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	2e-14
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	2e-11
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	8e-10
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	5e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-14
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-07
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	4e-14
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-11
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-09
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	8e-06
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	5e-14
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-12
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	6e-09
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	5e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-06
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	7e-14
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	3e-10
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-08
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	2e-04
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	9e-14
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	8e-09
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	4e-06
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	9e-14
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-09
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	2e-13
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-11
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	3e-10
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-04
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	2e-13
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	3e-08
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	4e-08
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	2e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-13
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-13
2crm_A	120	Fibronectin type-III domain containing protein 3A;	3e-13
2crm_A	120	Fibronectin type-III domain containing protein 3A;	9e-08
2crm_A	120	Fibronectin type-III domain containing protein 3A;	4e-07
2crm_A	120	Fibronectin type-III domain containing protein 3A;	7e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-13
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	5e-13
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	5e-10
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	3e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-13
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	7e-13
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	3e-10
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	2e-12
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	7e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-12
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-12
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-06
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	4e-12
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	2e-10
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	4e-09
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-07
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-11
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-08
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-07
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	3e-04
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	1e-11
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	2e-11
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	9e-11
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-11
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-04
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-11
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	2e-10
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	3e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-05
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-11
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-09
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	2e-11
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	1e-06
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-06
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	4e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	8e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-07
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	6e-11
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	4e-09
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	5e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	7e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	9e-11
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	1e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-10
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	9e-05
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-10
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	9e-10
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	5e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-10
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-05
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-10
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	4e-10
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	5e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-10
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-10
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-07
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-10
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	8e-06
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	2e-10
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	2e-10
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	7e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-07
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	3e-10
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	3e-09
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	7e-08
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	3e-10
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	7e-07
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	6e-06
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-10
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-04
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	4e-10
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	1e-04
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	5e-10
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	7e-07
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	1e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	5e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	6e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-06
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	8e-10
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	5e-09
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	6e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	8e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-07
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-09
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	3e-06
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	3e-05
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	2e-09
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	5e-08
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	6e-07
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	5e-09
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	8e-09
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	6e-07
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	7e-09
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	3e-07
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	2e-06
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	8e-09
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	8e-09
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	9e-09
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	2e-07
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	7e-07
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-08
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-08
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	4e-08
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-08
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	3e-05
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	1e-08
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	4e-08
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	9e-08
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	3e-08
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	6e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	4e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-06
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	4e-08
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	4e-08
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	6e-07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	4e-08
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	4e-08
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	5e-07
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	2e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	7e-08
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	1e-04
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	8e-08
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	5e-07
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	6e-06
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	1e-07
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	1e-07
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	2e-05
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-07
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	3e-07
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	3e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	4e-07
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	4e-07
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	6e-07
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	5e-07
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	8e-06
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	6e-07
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	6e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-07
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	7e-07
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	4e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-05
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	2e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	3e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	4e-06
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	6e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	9e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	1e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	2e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-05
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	7e-05
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	4e-04
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	4e-04
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	5e-04
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	5e-04
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	5e-04
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	8e-04

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  328 bits (842), Expect = e-103
 Identities = 113/662 (17%), Positives = 190/662 (28%), Gaps = 79/662 (11%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
                G + ++      P    +W   G+   +  R        L IS    +   +   
Sbjct: 87  SNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPNFYQVIFE 140

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
             T+ H    +   + VL  P            + + A +    +CSA    +       
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGD--RL 198

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV 176
              G+ + +  L E++  +         + N +  DAG+Y C++++  G  IS    ++V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGK 235
           + PP      Q+  V  T   IQ    + NG  PI   ++   T  + +W          
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSW---------- 307

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE-PSSPSPQYNTPADKPYQAPSRI 294
             DR      +     L P + YE  V+       G     P+ +  T    P + P ++
Sbjct: 308 -NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL 366

Query: 295 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRI 353
                K   ++I WEP         +    + +  +    E   E +            I
Sbjct: 367 EVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTI 426

Query: 354 PSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP 413
            +   YT   VK+  +N  G    S+ + + + ED+P   P            I + W  
Sbjct: 427 TNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWRE 485

Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR------TTRNWALIVGLQPDTKYYV 467
                    G +  + I Y    + +                     L  GL P T Y  
Sbjct: 486 PT----QTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSF 541

Query: 468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPII 527
            + A    G GP +      T   AP  P   +    +N T   VT           P+ 
Sbjct: 542 TIRASTAKGFGPPATNQF-TTKISAPSMPAYELETP-LNQTDNTVTVMLKPAHSRGAPVS 599

Query: 528 GYKVRVWEVDQDMSRANDTI---IPVGNTLDAD--------------------------- 557
            Y++ V E     ++    I    PV                                  
Sbjct: 600 VYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIG 659

Query: 558 ---------IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSAS 608
                       L P K Y +   A S                G         P   +  
Sbjct: 660 DNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDH 719

Query: 609 TT 610
           T 
Sbjct: 720 TV 721

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  158 bits (399), Expect = 5e-41
 Identities = 82/579 (14%), Positives = 154/579 (26%), Gaps = 95/579 (16%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN------GNLLISPVSRDDSGI 57
            G   T  C+              G  +     ++I          +  +   ++ D+G 
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAY 115
           Y C      G+  S    +V+  P      PP++         +QL  ++   +   VA 
Sbjct: 238 YRCMIRTEGGVGISNYAELVVKEPPV-PIAPPQLASVGATYLWIQLNANSINGDGPIVAR 296

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI------- 168
              +        D   +++ +  I   L   T            V+ +  G+        
Sbjct: 297 EVEYCTASGSWNDRQPVDSTSYKIGH-LDPDTEYEI-------SVLLTRPGEGGTGSPGP 348

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTW 225
           + +T      P   P  ++VVEV     TI+W       T      +  +          
Sbjct: 349 ALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRC-HSYNLTVHYCYQVGGQE 407

Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
               E     E        + +I N L P++    K+I  N  G    S       T  D
Sbjct: 408 QVREEVSWDTENSHP----QHTITN-LSPYTNVSVKLILMNPEGRK-ESQELIVQ-TDED 460

Query: 286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN 345
            P   P+    G      + + W      +       Y+I ++  +  + + +   + G 
Sbjct: 461 LPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVITLYEITYKAVSSFDPEIDLSNQSGR 518

Query: 346 VGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF 398
           V           +        T Y   ++A    G GP +      +    P +    + 
Sbjct: 519 V---SKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATN-QFTTKISAPSMPAYELE 574

Query: 399 SR-GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE----------------- 440
           +        + V   P      +    +  ++I   +E                      
Sbjct: 575 TPLNQTDNTVTVMLKPAH----SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQ 630

Query: 441 -----------TAVYYLSRTTRNWALIVG------------LQPDTKYYVKVMAYNNAGE 477
                       A +            +G            L P   Y +   A + A  
Sbjct: 631 NASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANG 690

Query: 478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY 516
             + +     T   A  KP      +     TV  T  +
Sbjct: 691 ETKIDCVQVATKGAATPKPVPE--PEKQTDHTVKGTKHH 727

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  295 bits (756), Expect = 4e-92
 Identities = 91/612 (14%), Positives = 181/612 (29%), Gaps = 69/612 (11%)

Query: 5   GGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 57
             N T  C       +         VWK +   I       I    + +        +  
Sbjct: 18  HSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYEQLPP------KITIAAHRNLQLRCSAHTEELL 111
            +C       ++++   + ++        LPP         +   + ++       E  L
Sbjct: 78  LTCNILTFGQLEQNVYGITII------SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL 131

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKIS 169
           +  +            D         +  +D   +   N       E     ++ +GK++
Sbjct: 132 ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN------IEVWVEAENALGKVT 185

Query: 170 TKTTVI---VEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 224
           +         +  P  P  + V   E   +   + WT+ +     I  Y I  RT   ST
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245

Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--T 282
           W  +           +T      +++ L P++ Y F++    E G G  S  S + +  T
Sbjct: 246 WSQIPPEDTASTRSSFT------VQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298

Query: 283 PADKPYQA----PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE 338
             D+P +A                 + + W+ LP  + N   + Y++    +  +  Q+ 
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT-RWKSHLQNY 357

Query: 339 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF 398
           T+          V +        Y   +   N VG    + +     A D     P    
Sbjct: 358 TVNAT----KLTVNLT----NDRYLATLTVRNLVGKSDAAVLTI--PACDFQATHPVMDL 407

Query: 399 SRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVG 458
                   + V W      RE+++  ++   +   K     +        T     L   
Sbjct: 408 KAFPKDNMLWVEWTT---PRESVKKYILEWCVLSDKAPCITD--WQQEDGTVHRTYLRGN 462

Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS 518
           L     Y + V      G G           +  P K P+ V  K +      + W  + 
Sbjct: 463 LAESKCYLITVTPVYADGPGSPESIK-AYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLP 520

Query: 519 PSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG 578
              +   I  Y +    +  +       +    +  +  +  L+    Y +R+ A+++ G
Sbjct: 521 VDVQNGFIRNYTIFYRTIIGN----ETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576

Query: 579 DGRMSSPAITFQ 590
                 P  TF 
Sbjct: 577 GK--DGPEFTFT 586

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 97.0 bits (241), Expect = 3e-21
 Identities = 38/295 (12%), Positives = 73/295 (24%), Gaps = 22/295 (7%)

Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 364
            +  + +     NA  I +K      N      E          +V          +   
Sbjct: 26  VLKEKCMDYFHVNANYIVWK-----TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 80

Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
            +     +        +       +P   P+ +         +   W+            
Sbjct: 81  NILTFGQLEQNVYGITII----SGLPPEKPKNLSCIVNEGKKMRCEWDG-----GRETHL 131

Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
                +K     +           T  +  +           V V A N  G+   S+  
Sbjct: 132 ETNFTLKSEWATHKFADCKAK-RDTPTSCTVDYSTVYFVNIEVWVEAENALGKV-TSDHI 189

Query: 485 LERTYRKAPQKPPSAVHIKGIN--PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR 542
                 K    PP  + +       + + +TW   +PS +   I+ Y ++    D     
Sbjct: 190 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDASTWS 247

Query: 543 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 595
                          + DL P   Y  R+      G G  S  S   +    E++
Sbjct: 248 QIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 302

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  277 bits (711), Expect = 6e-88
 Identities = 84/401 (20%), Positives = 154/401 (38%), Gaps = 36/401 (8%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNII-------GSGGRRKIFE---NGNLLISPVS 51
             E G VT+ C+ E  P P+  WK+  +            GR ++     + +L I  V 
Sbjct: 12  TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
             DSG Y C A +  G  +    L + + P +               + + C   +    
Sbjct: 72  LSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF-ISNQTIYYSWEGNPINISCDVKSNPPA 130

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
            +   W  + + +   +   L+T +      +LEI   S  D G Y C   + +G    +
Sbjct: 131 SI--HWRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQE 187

Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 230
             + +   P  P GV+++E+ +T+A + +    +  G PI HY++  +   +  W  V  
Sbjct: 188 YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRS 247

Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
           H           +    + N L P +TYE +V A N  G G+ S        P  +P  +
Sbjct: 248 HG---------VQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP--S 295

Query: 291 PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIA 349
           P  I G         +S     ++   AP + Y + +R K+ + ++  + ++        
Sbjct: 296 PPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ----GNKD 349

Query: 350 VVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
            + +    +   YEV++ A N +G    +     FS    P
Sbjct: 350 HIILEHLQWTMGYEVQITAANRLGYSEPTV--YEFSMPPKP 388

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  131 bits (330), Expect = 2e-33
 Identities = 63/436 (14%), Positives = 138/436 (31%), Gaps = 81/436 (18%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGL 143
               T   +  + L C A  E + ++   W          + ++     I +        
Sbjct: 7   LKNETTYENGQVTLVCDAEGEPIPEI--TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEV------------ 191
           L I +   +D+G Y+C   S +G       + +E  P       +               
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124

Query: 192 -HKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 247
                A+I W     +   +       +   +             I    D   GR    
Sbjct: 125 KSNPPASIHWR---RDKLVLPAKNTTNLKTYSTGRKMIL-----EIAPTSDNDFGR---- 172

Query: 248 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-- 305
                       +   A N +G    +         AD P  +P  +     KI +LS  
Sbjct: 173 ------------YNCTATNHIG----TRFQEYILALADVP-SSPYGV-----KIIELSQT 210

Query: 306 ---ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYT 360
              +S+   P      P  +Y++  ++     ++   ++ +G   + V+    P     T
Sbjct: 211 TAKVSFNK-PDSHGGVPIHHYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEP----NT 263

Query: 361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
            YE++V A+N  G G  S++    +       +P  +  +  +  +  ++       +++
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIFQTLPVREP-SPPSIHGQPSSGKSFKLSITK----QDD 318

Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
               ++ + +  ++  + E+  +    +  ++  ++  LQ    Y V++ A N  G    
Sbjct: 319 GGAPILEYIV-KYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEP 377

Query: 481 SERYLERTYRKAPQKP 496
           +           P KP
Sbjct: 378 TV-----YEFSMPPKP 388

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  116 bits (291), Expect = 3e-28
 Identities = 59/298 (19%), Positives = 101/298 (33%), Gaps = 48/298 (16%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDS 55
           Y+ EG  + I C+ ++ P     W++D  ++ +     +          L I+P S +D 
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           G Y+CTATN  G    +  L +   PS      P           ++    ++    V+ 
Sbjct: 171 GRYNCTATNHIGTRFQEYILALADVPS-----SPY---------GVKIIELSQTTAKVS- 215

Query: 116 IWT----HNGVRIGN-------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164
            +     H GV I +       +     +    +    ++ + N       E      + 
Sbjct: 216 -FNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274

Query: 165 VG-----KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART 219
            G     KI    T+ V   P  P  +        S  +  T     G PI  Y +  R+
Sbjct: 275 KGQGDYSKIEIFQTLPVR-EPS-PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRS 332

Query: 220 NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                 +   E  +    D         +E+ L     YE ++ A N LGY EP+   
Sbjct: 333 KDKEDQWL--EKKVQGNKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE 381

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 90.6 bits (225), Expect = 9e-20
 Identities = 47/272 (17%), Positives = 99/272 (36%), Gaps = 26/272 (9%)

Query: 324 KIFWRKKNDTEFQSET---LKEYGNVGIAVVRIPS--EFYYTEYEVKVQAINDVGPGPES 378
            I WR+ +     ++    LK Y      ++ I    +  +  Y     A N +G     
Sbjct: 131 SIHWRR-DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY--NCTATNHIG---TR 184

Query: 379 EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP 438
               I +  D+P  +P GV     + T   V++N  +    +    +  +++   +  + 
Sbjct: 185 FQEYILALADVPS-SPYGVKIIELSQTTAKVSFNKPD---SHGGVPIHHYQVDVKEVASE 240

Query: 439 EETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
               V      T    ++  L+P+T Y ++V A N  G+G  S+      ++  P + PS
Sbjct: 241 IWKIVRSHGVQTM--VVLNNLEPNTTYEIRVAAVNGKGQGDYSK---IEIFQTLPVREPS 295

Query: 499 A--VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDA 556
              +H +  +  +  ++           PI+ Y V+    D++       +   GN    
Sbjct: 296 PPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV--QGNKDHI 351

Query: 557 DIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
            +  L     Y +++ A +  G    +    +
Sbjct: 352 ILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
            P  V I  ++ TT  V++    P      PI  Y+V V EV  ++ +   +    G   
Sbjct: 198 SPYGVKIIELSQTTAKVSFN--KPDSHGGVPIHHYQVDVKEVASEIWKIVRS---HGVQT 252

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
              + +L P   Y +RV A +  G G  S   I   +   +
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  224 bits (572), Expect = 7e-65
 Identities = 77/502 (15%), Positives = 150/502 (29%), Gaps = 73/502 (14%)

Query: 153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 212
            +G  +C             T+    P      ++  E+      ++W+           
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI 193

Query: 213 YKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLVPWSTYEFKVIAGNELGYG 271
           Y +  R N+       SE              +   + + + P   Y+F+V A N  G  
Sbjct: 194 YVVQRRWNYGIHP---SEDDATHWQTVAQTTDERVQLTD-IRPSRWYQFRVAAVNVHGTR 249

Query: 272 EPSSPSPQYNTPAD-KPYQAPSRIGGGGGKIG-----DLSISWEPLPREKQNAPNIYYKI 325
             ++PS  + +  D     AP+ +      +       ++I W+    E+ + P  +YK+
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKV 307

Query: 326 FWRKK-NDTEFQSETLKEYGNVGIAV--VRIPSEFYYTEYEVKVQAINDVGPGP-ESEVV 381
           FW    +         K           V +       +Y V++QAI   G    +S  V
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV 367

Query: 382 TIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR----------------- 424
           ++           + +           + +      R    G                  
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427

Query: 425 ----LIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
               +  + ++++ E    N    +      T  N+ ++  L    KY V V        
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487

Query: 478 GPESERYL----------------------ERTYRKAPQKP--PSAVHIKGINPTTVHVT 513
                 +                            K   KP   SA  I      T H +
Sbjct: 488 SKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFS 547

Query: 514 WRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTIIPVGNTLDAD-----IVDLSPGKR 566
           W+ ++ +   +P+ G++V   EV      +   ++II     L +D     + +L P   
Sbjct: 548 WK-MAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTL 606

Query: 567 YHMRVLAFSNGGDGRMSSPAIT 588
           Y + V   + GG+G  +     
Sbjct: 607 YRLEVQVLTPGGEGPATIKTFR 628

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  122 bits (307), Expect = 2e-29
 Identities = 51/383 (13%), Positives = 101/383 (26%), Gaps = 65/383 (16%)

Query: 270 YGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK 329
            G   +           P +    +     + G L + W    +   +   + Y +  R 
Sbjct: 143 NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSS--KFNISIEPVIYVVQRRW 200

Query: 330 KNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVT 382
                   +    +      V +   E            Y+ +V A+N  G    +    
Sbjct: 201 NYGIHPSEDDATHW----QTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSK 256

Query: 383 IFSAEDMPQVAPQGVFSRGFNSTA-------INVTWNPIELIRENIRGRLIGHRIKYWKE 435
            F +   P   P     R  NST        + + W+  E     +    +     +W  
Sbjct: 257 HFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKV-----FWSW 311

Query: 436 DNPEETAVYYLSRTTR------NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
               ++ V    +  +      N  ++  LQPD  Y V++ A    G+       +   +
Sbjct: 312 MVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHF 371

Query: 490 RKAPQKPPSAVHIK----------------------------GINPTTVHVTWRYVSPSF 521
                       +K                                  V V W       
Sbjct: 372 TSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYW----KKT 427

Query: 522 EEEPIIGYKVRVWEV--DQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD 579
           E+  +  Y VR +      + +  ++    + +     + DLS   +Y + V        
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487

Query: 580 GRMSSPAITFQMGEEKEFKSGSP 602
            +  +   T       + KS  P
Sbjct: 488 SKAEAVFFTTPPCSALKGKSHKP 510

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  107 bits (268), Expect = 1e-24
 Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 14/253 (5%)

Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
           +  V     + +P    + +      S  + V W+    I       ++  R  Y    +
Sbjct: 148 TCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPS 207

Query: 438 PEETAVYY-LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP 496
            ++   +  +++TT     +  ++P   Y  +V A N  G    +         K P  P
Sbjct: 208 EDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP 267

Query: 497 PSAVHIKGIN-------PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
           P+  +++  N         TV + W    P   + P+  YKV    +    S        
Sbjct: 268 PAPANLRLANSTVNSDGSVTVTIVWD--LPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKR 325

Query: 550 V----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALY 605
                G      +  L P   Y + + A +  G  R+ S  ++          +    + 
Sbjct: 326 RKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVK 385

Query: 606 SASTTLLLVMSST 618
           +    +   +   
Sbjct: 386 TRKGGIQTQLPFQ 398

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 60.0 bits (144), Expect = 1e-09
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV---WEVD 537
           + +  +  Y+  P KP   +    +    + V W   S        + Y V+    + + 
Sbjct: 148 TCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWS--SKFNISIEPVIYVVQRRWNYGIH 205

Query: 538 QDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKE 596
                A     +         + D+ P + Y  RV A +  G    ++P+  F+  ++  
Sbjct: 206 PSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265

Query: 597 FKSGSPALYSASTTLLLVMSSTLYI 621
                  L  A++T+    S T+ I
Sbjct: 266 APPAPANLRLANSTVNSDGSVTVTI 290

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  204 bits (520), Expect = 6e-61
 Identities = 69/297 (23%), Positives = 107/297 (36%), Gaps = 27/297 (9%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFE----NGNLLISPVSRDDSG 56
                N T+ C     PKP   W + G  II  G + +I E       L+I+ V+ DD+ 
Sbjct: 16  VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75

Query: 57  IYSCTATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
           +Y   ATN  G       L V     +H P   E     +       + ++     +   
Sbjct: 76  VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEVVSIKIPFSGKPDP 134

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
            +   W      I   +    +         L+        DAG Y    K+  G     
Sbjct: 135 VI--TWQKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190

Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 230
             + V   P  P GV+V +V + S  + WT+  +  G  IT+Y +         W  V +
Sbjct: 191 VELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ 250

Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                           ++ N L   ++Y+F+VIA N+ G  +PS PS    T  DK 
Sbjct: 251 ----------ARETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKT 296

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 72.9 bits (179), Expect = 4e-14
 Identities = 56/343 (16%), Positives = 89/343 (25%), Gaps = 86/343 (25%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 145
           +    + +    N  L C             W   G  I    L              L 
Sbjct: 9   EELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG-GYHQLI 65

Query: 146 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--------PGGVQVVE------- 190
           I + +  DA  Y+    +  G +S   ++ VE P  +         G V  +        
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125

Query: 191 ---VHKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRY-TGR 243
                K    I W         I    HY++I   ++ S        V    V+R   G 
Sbjct: 126 IPFSGKPDPVITWQ---KGQDLIDNNGHYQVIVTRSFTSL-------VFPNGVERKDAGF 175

Query: 244 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 303
                           + V A N  G  + +         AD P   P  +     K+ D
Sbjct: 176 ----------------YVVCAKNRFGIDQKTV----ELDVADVP-DPPRGV-----KVSD 209

Query: 304 LS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 358
           +S     ++W   P     +    Y +         +              V +     Y
Sbjct: 210 VSRDSVNLTWTE-PASDGGSKITNYIVEKCATTAERWL------------RVGQARETRY 256

Query: 359 -------YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
                   T Y+ +V A N  G    SE       ++    A 
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPI 526
            V A N  G     ++ +E      P  PP  V +  ++  +V++TW    P+ +    I
Sbjct: 177 VVCAKNRFGI---DQKTVELDVADVPD-PPRGVKVSDVSRDSVNLTWT--EPASDGGSKI 230

Query: 527 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
             Y V       +                  +++L     Y  RV+A +  G  + S P+
Sbjct: 231 TNYIVEKCATTAERWLRVGQA----RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286

Query: 587 ITFQMGEEKE 596
                 E+K 
Sbjct: 287 EPTITKEDKT 296

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  183 bits (467), Expect = 1e-54
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 16/217 (7%)

Query: 175 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFNVSEHVI 233
           IV+  P  P     +      A I W     N  PI HY I   T++   +W    E V 
Sbjct: 1   IVQDVPNAPKLT-GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 293
             +               + PW+ Y F+VIA N++G   PS+ S    T  D P++ P  
Sbjct: 60  NTDSSFVVQ---------MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110

Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR 352
           + G G +  +L ISW P+P  + NAPN +Y + W++      +++  +    +     + 
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF---DWRQNNIV 167

Query: 353 IPSEFYYTEYEVKVQAINDVGPGPES-EVVTIFSAED 388
           I  +  + +Y +KV AIND G    + E V  +S ED
Sbjct: 168 IADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 204

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  107 bits (268), Expect = 1e-26
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 11/181 (6%)

Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEY 362
            I WE   +    +P ++Y I +             ++  N   + V    P    +  Y
Sbjct: 22  EIHWEQ--QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSP----WANY 75

Query: 363 EVKVQAINDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
             +V A N +G  P S      +   D+P   P  V  +G     + ++W P+       
Sbjct: 76  TFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMP--EIEH 133

Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
                 + + + ++          +    +N  +I       KY +KV+A N+ GE   +
Sbjct: 134 NAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 193

Query: 482 E 482
            
Sbjct: 194 A 194

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  103 bits (258), Expect = 2e-25
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 10/196 (5%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
            +    + W      + + R  ++ + I++     P      Y      + + +V + P 
Sbjct: 17  QADKAEIHWEQ----QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPW 72

Query: 463 TKYYVKVMAYNNAGEGP---ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSP 519
             Y  +V+A+N  G  P    S+     T    P K P  V  +G  P  + ++W  +  
Sbjct: 73  ANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPE 130

Query: 520 SFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD 579
                P   Y V  W+ D   +   +  I      +  I D     +Y ++V+A ++ G+
Sbjct: 131 IEHNAPNFHYYVS-WKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGE 189

Query: 580 GRMSSPAITFQMGEEK 595
             +++  +    GE++
Sbjct: 190 SNVAAEEVVGYSGEDR 205

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
           + P   P  V        +  I WT      +  P  HY +  + +  +  +  +  +  
Sbjct: 102 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN-IFD 160

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 286
              +         I +    +  Y  KV+A N+ G    ++      +  D+
Sbjct: 161 WRQNNIV------IAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 205

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  173 bits (441), Expect = 6e-49
 Identities = 72/413 (17%), Positives = 131/413 (31%), Gaps = 53/413 (12%)

Query: 179 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P   P  + +         T+ W         IT Y+I           ++ E V   + 
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 57

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
                    + +N L P   Y   V    +     P S +     P       P+ +   
Sbjct: 58  ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTIIPAVPP------PTDLRFT 104

Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 355
                 + ++W P P    +     + + +    + E  +E      +    V+   +P 
Sbjct: 105 NIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLP- 158

Query: 356 EFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
               TEY V V ++ +                     +P G+      + +  V W    
Sbjct: 159 ---GTEYVVSVSSVYEQHESTPLRGRQ-----KTGLDSPTGIDFSDITANSFTVHWIAP- 209

Query: 416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA 475
                 R  + G+RI++  E          +   +RN   +  L P T+Y V ++A N  
Sbjct: 210 ------RATITGYRIRHHPEHFSGRPREDRVP-HSRNSITLTNLTPGTEYVVSIVALNGR 262

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
            E P          +      P  + +    PT++ ++W   +       +  Y++   E
Sbjct: 263 EESPLLI-----GQQSTVSDVPRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGE 312

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
              +      T+   G+   A I  L PG  Y + V A +  GD   SS  I+
Sbjct: 313 TGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPIS 363

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  124 bits (313), Expect = 2e-31
 Identities = 51/338 (15%), Positives = 101/338 (29%), Gaps = 43/338 (12%)

Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
           EY   V +    K S   +  +      P  ++   +   +  + W         +T++ 
Sbjct: 70  EYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 127

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           +      N             E+          + N L+P + Y   V +  E     P 
Sbjct: 128 VRYSPVKNEEDV--------AELSISPSDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPL 178

Query: 275 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 334
                          +P+ I          ++ W         A    Y+I    ++ + 
Sbjct: 179 R------GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSG 227

Query: 335 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQV 392
              E      +     +    P     TEY V + A+N     P            +   
Sbjct: 228 RPREDRVP-HSRNSITLTNLTP----GTEYVVSIVALNGREESPLLIG----QQSTVSD- 277

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+ +       T++ ++W+            +  +RI Y +         + +   +++
Sbjct: 278 VPRDLEVVAATPTSLLISWDAPA-------VTVRYYRITYGETGGNSPVQEFTVP-GSKS 329

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
            A I GL+P   Y + V A    G+ P S + +   YR
Sbjct: 330 TATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  164 bits (418), Expect = 2e-47
 Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 7/208 (3%)

Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
           D+P + P GV +   +   I +TW    L +         + +  WK + P  T     +
Sbjct: 2   DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTV-RWKTNIPANTKYKNAN 60

Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG--I 505
             T    L+ GL+P+T Y   VM          S      T+   P  PP  V +     
Sbjct: 61  -ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEG 119

Query: 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK 565
            P T+ V W+   PS     I GY +                  VGN L   I +L+   
Sbjct: 120 KPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDT 177

Query: 566 RYHMRVLAFSNGGDGRMSSPAITFQMGE 593
            Y+ ++ A ++ G G MS   + F+  +
Sbjct: 178 PYYFKIQARNSKGMGPMSEA-VQFRTPK 204

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  141 bits (357), Expect = 6e-39
 Identities = 51/223 (22%), Positives = 74/223 (33%), Gaps = 17/223 (7%)

Query: 284 ADKPYQAPSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           AD P   P  +         + I+W    LP+ ++   + YY + W+       + +   
Sbjct: 1   ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA- 59

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG--VFS 399
              N       +      T YE  V           S      + E +P   P+   V S
Sbjct: 60  ---NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVS 116

Query: 400 RGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT-TRNWALIVG 458
           +      I V W P         G++ G+ I Y  + N E            R    I  
Sbjct: 117 KEGKPKTIIVNWQPP----SEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQE 172

Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
           L  DT YY K+ A N+ G GP SE    RT    P+      H
Sbjct: 173 LTLDTPYYFKIQARNSKGMGPMSEAVQFRT----PKAHHHHHH 211

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  106 bits (266), Expect = 2e-26
 Identities = 40/217 (18%), Positives = 66/217 (30%), Gaps = 16/217 (7%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHVIG 234
           P   P GVQ   +   +  I W D +           +Y +  +TN  +     + +   
Sbjct: 4   PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN--- 60

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
                        +   L P + YEF V+          S  +    T    P   P  +
Sbjct: 61  ------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELVPTSPPKDV 112

Query: 295 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 354
                +    +I     P  + N     Y I++    + E     ++          +I 
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG-NRLTHQIQ 171

Query: 355 SEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
                T Y  K+QA N  G GP SE V   + +    
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHH 208

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 177 EGPPGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
           E  P  P     V   E    +  + W   +     IT Y I   T+ N+   +     +
Sbjct: 102 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV 161

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                 +       I+  L   + Y FK+ A N  G G  S  
Sbjct: 162 VGNRLTHQ------IQE-LTLDTPYYFKIQARNSKGMGPMSEA 197

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  164 bits (418), Expect = 4e-47
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 15/207 (7%)

Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
             M   APQ   ++   S  I+  W P         G+ +G+R+KYW + + E  A    
Sbjct: 2   SHMDLGAPQNPNAKAAGSRKIHFNWLPP-------SGKPMGYRVKYWIQGDSESEAHLL- 53

Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506
             +      +  L P   Y +KV AY   GEGP S     RT+++ P   P  +    ++
Sbjct: 54  -DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVS 111

Query: 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD---MSRANDTIIPVGNTLDADIVDLSP 563
            T   ++W    P+     I  Y+V    V+ D   +      ++         I +L  
Sbjct: 112 STVTQLSWA--EPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRE 169

Query: 564 GKRYHMRVLAFSNGGDGRMSSPAITFQ 590
            + Y   V A +  G G      I   
Sbjct: 170 SQPYRYTVKARNGAGWGPEREAIINLA 196

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  138 bits (349), Expect = 2e-37
 Identities = 46/243 (18%), Positives = 83/243 (34%), Gaps = 23/243 (9%)

Query: 285 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
                AP            +  +W P      +   + Y++ +  + D+E ++  L    
Sbjct: 3   HMDLGAPQNPNAKAAGSRKIHFNWLP-----PSGKPMGYRVKYWIQGDSESEAHLLD--S 55

Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF 402
            V    +    P    Y +YE+KV A    G GP S +V+  + +++P   P  +     
Sbjct: 56  KVPSVELTNLYP----YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVV 110

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN----WALIVG 458
           +ST   ++W           G +  + + Y   ++              N      LI  
Sbjct: 111 SSTVTQLSWAEPA----ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN 166

Query: 459 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRK-APQKPPSAVHIKGINPTTVHVTWRYV 517
           L+    Y   V A N AG GPE E  +    +   P   P    I  ++  +      ++
Sbjct: 167 LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFL 226

Query: 518 SPS 520
             S
Sbjct: 227 MYS 229

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 95.6 bits (238), Expect = 2e-22
 Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 30/241 (12%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
             G P                W     +G+    Y++      +S           +   
Sbjct: 5   DLGAPQNPNAKAAGSRKIHFNWL--PPSGK-PMGYRVKYWIQGDSES---------EAHL 52

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 298
             +      + N L P+  YE KV A    G G  SS      T  + P   P R+    
Sbjct: 53  LDSKVPSVELTN-LYPYCDYEMKVCAYGAQGEGPYSSLVSCR-THQEVP-SEPGRL---- 105

Query: 299 GKIGDLS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV--V 351
                +S     +SW   P E  N     Y++ +   ND       +K+          +
Sbjct: 106 -AFNVVSSTVTQLSWAE-PAE-TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRML 162

Query: 352 RIPSEFYYTEYEVKVQAINDVGPGPESE-VVTIFSAEDMPQVAPQGVFSRGFNSTAINVT 410
            I +      Y   V+A N  G GPE E ++ + +    P   P        ++ +    
Sbjct: 163 LIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222

Query: 411 W 411
            
Sbjct: 223 D 223

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           +  P  PG +    V  T   + W + A     IT Y++      +          +  +
Sbjct: 96  QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 296
             +        IEN L     Y + V A N  G+G          T   +P   P     
Sbjct: 156 NPKNR---MLLIEN-LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDI 211

Query: 297 GGGKI--GDLSISWEPLPRE 314
                  G+   S+     +
Sbjct: 212 PIVDAQSGEDYDSFLMYSDD 231

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score =  174 bits (441), Expect = 4e-46
 Identities = 91/631 (14%), Positives = 173/631 (27%), Gaps = 76/631 (12%)

Query: 7   NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFEN-----GNLLISPVSRDDSGIYSC 60
           +  + C P   P PK     +G   I S    +         G+L+I+   R  + + + 
Sbjct: 296 SSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI--RGGNNLAAE 353

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
              N+  ++E  G L +    +       +        L+L      E      Y     
Sbjct: 354 LEANLGLIEEISGYLKIRRSYALVSLSFFR-------KLRLIRGETLEIGNYSFYA---- 402

Query: 121 GVRIGNMDLNELETP---NINIDGGLLEITNASFADAGEYECVV-------KSTVGKIST 170
              + N +L +L      N+ I  G L           E   +        +     I+ 
Sbjct: 403 ---LDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIAL 459

Query: 171 KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKII------------- 216
           KT                +        ++W      + R +  + +              
Sbjct: 460 KTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFD 519

Query: 217 -ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS- 274
                 +++W  V      +  D  +      +   L PW+ Y   V           + 
Sbjct: 520 GQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTY 579

Query: 275 ---SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN 331
              S      T A  P   P            + + W+P      N    +Y +FW ++ 
Sbjct: 580 GAKSDIIYVQTDATNP-SVPLDPISVSNSSSQIILKWKPP--SDPNGNITHYLVFWERQA 636

Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
           +     E                 +     +    ++ +           +       P+
Sbjct: 637 EDSELFEL---------DYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPK 687

Query: 392 VAPQGVFSRGFNSTAINVTWNP--IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
              Q    +    ++   T+      ++      R            N EE   +     
Sbjct: 688 TDSQ--ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV-V 744

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERT-YRKAPQKPPSAVHIKGI 505
            +   +I GL+  T Y +++ A N          +     RT            V  +  
Sbjct: 745 NKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIF 804

Query: 506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK 565
               VH+ W+   P      I+ Y+V       +     DT           +  LSPG 
Sbjct: 805 ENNVVHLMWQ--EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG- 861

Query: 566 RYHMRVLAFSNGGDGRMSSPAITFQMGEEKE 596
            Y +R+ A S  G+G  + P   F + +  +
Sbjct: 862 NYSVRIRATSLAGNGSWTEP-TYFYVTDYLD 891

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 84.6 bits (208), Expect = 4e-17
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 13/209 (6%)

Query: 188 VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 247
           + E+ ++S    + D   N   +   +   +        N   +   +  ++   ++   
Sbjct: 693 LKELEESSFRKTFEDYLHNV--VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLV 750

Query: 248 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN---TPADKPYQAPSRIGGGGGKIGDL 304
           I   L  ++ Y  ++ A N+    E  S +   +    P  K       +     +   +
Sbjct: 751 ISG-LRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVV 809

Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYE 363
            + W+  P ++ N   + Y++ +R+  D E    +T K +       +R         Y 
Sbjct: 810 HLMWQE-P-KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLR---GLSPGNYS 864

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQV 392
           V+++A +  G G  +E    F   D   V
Sbjct: 865 VRIRATSLAGNGSWTEPTY-FYVTDYLDV 892

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  165 bits (420), Expect = 6e-46
 Identities = 66/413 (15%), Positives = 124/413 (30%), Gaps = 52/413 (12%)

Query: 179 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P   P  + +         T+ W    +    IT Y+I           ++ E V   + 
Sbjct: 2   PLSPPTNLHLEANPDTGVLTVSWE--RSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 58

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
                    + +N L P   Y   V    +     P S         + P    + +   
Sbjct: 59  ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPIS----DTIIPEVP--QLTDLSFV 105

Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 355
                 + + W PL     ++  I Y+I      +     E   +  +VG   V    P 
Sbjct: 106 DITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP- 159

Query: 356 EFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
                +Y++ V  + + G    + +             P  +         + VTW P  
Sbjct: 160 ---GIDYDISVITLINGGESAPTTLTQQT-----AVPPPTDLRFTNIGPDTMRVTWAPPP 211

Query: 416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA 475
                    L    ++Y    N E+ A   +S  + N  ++  L P T+Y V V +    
Sbjct: 212 ------SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQ 264

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
            E            +K     P+ +    I   +  V W           I GY++R   
Sbjct: 265 HESTPLR-----GRQKTGLDSPTGIDFSDITANSFTVHWIAPRA-----TITGYRIRHHP 314

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
                    D +    +     + +L+PG  Y + ++A +   +  +     +
Sbjct: 315 EHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  121 bits (306), Expect = 3e-30
 Identities = 61/331 (18%), Positives = 108/331 (32%), Gaps = 44/331 (13%)

Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
           EY   V +    K S   +  +         +  V++  +S  ++WT    N   I  Y+
Sbjct: 71  EYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWT--PLNSSTIIGYR 128

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           I            + E  +   V  YT      +   L P   Y+  VI     G   P+
Sbjct: 129 ITVVAAGEGIP--IFEDFVDSSVGYYT------VTG-LEPGIDYDISVITLINGGESAPT 179

Query: 275 SPSPQYNTPADKPYQ-APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
           + + Q  T    P     + IG        + ++W P P    +     + + +    + 
Sbjct: 180 TLTQQ--TAVPPPTDLRFTNIGPD-----TMRVTWAPPP----SIDLTNFLVRYSPVKNE 228

Query: 334 EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQ 391
           E     L    +    V+   +P     TEY V V ++ +                 +  
Sbjct: 229 E-DVAELSISPSDNAVVLTNLLP----GTEYVVSVSSVYEQHESTPLRGRQ---KTGLD- 279

Query: 392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR 451
            +P G+      + +  V W          R  + G+RI++  E          +   +R
Sbjct: 280 -SPTGIDFSDITANSFTVHWIAP-------RATITGYRIRHHPEHFSGRPREDRVP-HSR 330

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
           N   +  L P T+Y V ++A N   E P   
Sbjct: 331 NSITLTNLTPGTEYVVSIVALNGREESPLLI 361

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 96.8 bits (241), Expect = 9e-22
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 18/201 (8%)

Query: 389 MPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
           MP   P  +      ++  + V+W             + G+RI     +  +  ++  + 
Sbjct: 1   MPLSPPTNLHLEANPDTGVLTVSWERST------TPDITGYRITTTPTNGQQGNSLEEVV 54

Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINP 507
              ++      L P  +Y V V    +  E        +    + P    + +    I  
Sbjct: 55  HADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS---DTIIPEVP--QLTDLSFVDITD 109

Query: 508 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 567
           +++ + W  ++ S     IIGY++ V    + +    D +    +     +  L PG  Y
Sbjct: 110 SSIGLRWTPLNSS----TIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDY 163

Query: 568 HMRVLAFSNGGDGRMSSPAIT 588
            + V+   NGG+   ++    
Sbjct: 164 DISVITLINGGESAPTTLTQQ 184

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 38/235 (16%)

Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
           +Y+  V +   G  S  TT+  +     P  ++   +   +  + W         +T++ 
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 219

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           +      N     V+E  I    +         + N L+P + Y   V +  E     P 
Sbjct: 220 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 270

Query: 275 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
               +  T  D P          +            ++ W   P     A    Y+I   
Sbjct: 271 RGRQK--TGLDSPTGIDFSDITANSF----------TVHWIA-P----RATITGYRIRHH 313

Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
            ++ +       ++        + + +    TEY V + A+N     P       
Sbjct: 314 PEHFSG---RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  159 bits (403), Expect = 2e-44
 Identities = 45/286 (15%), Positives = 87/286 (30%), Gaps = 24/286 (8%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           + + W+ LP  + N   + Y++   +   +  Q+ T     N     V +        Y 
Sbjct: 25  VQLVWKTLPPFEANGKILDYEVTLTR-WKSHLQNYT----VNATKLTVNLT----NDRYL 75

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
             +   N VG    + +     A D     P            + V W      RE+++ 
Sbjct: 76  ATLTVRNLVGKSDAAVLTI--PACDFQATHPVMDLKAFPKDNMLWVEWTTP---RESVKK 130

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
            ++   +   K     +        T     L   L     Y + V      G G     
Sbjct: 131 YILEWCVLSDKAPCITDWQQ--EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI 188

Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA 543
                 +  P K P+ V  K +      + W  +    +   I  Y +    +  + +  
Sbjct: 189 KA-YLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV 246

Query: 544 NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
           N       +  +  +  L+    Y +R+ A+++ G      P  TF
Sbjct: 247 NVD----SSHTEYTLSSLTSDTLYMVRMAAYTDEGGK--DGPEFTF 286

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  153 bits (388), Expect = 3e-42
 Identities = 46/309 (14%), Positives = 83/309 (26%), Gaps = 35/309 (11%)

Query: 178 GPPGLPGGVQVVEVHK-TSATIQW--TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
             P     +         +  + W           I  Y  +  T W S   N + +   
Sbjct: 6   KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDY-EVTLTRWKSHLQNYTVN--- 61

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
                      A+   V +    Y   +   N +G    S  +       D     P   
Sbjct: 62  -----------ATKLTVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMD 107

Query: 295 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 354
                K   L + W              Y + W   +D      T  +  +  +    + 
Sbjct: 108 LKAFPKDNMLWVEWTT-----PRESVKKYILEWCVLSDKA-PCITDWQQEDGTVHRTYLR 161

Query: 355 SEFY-YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP 413
                   Y + V  +   GPG   E +  +  +  P   P  V ++        + W+ 
Sbjct: 162 GNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQ 219

Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473
           +    +   G +  + I Y      E         ++     +  L  DT Y V++ AY 
Sbjct: 220 LP--VDVQNGFIRNYTIFYRTIIGNETAVNV---DSSHTEYTLSSLTSDTLYMVRMAAYT 274

Query: 474 NAGEGPESE 482
           + G     E
Sbjct: 275 DEGGKDGPE 283

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 35/213 (16%), Positives = 54/213 (25%), Gaps = 17/213 (7%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           +  T    +     P              ++WT   T    +  Y +      +      
Sbjct: 90  AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWT---TPRESVKKYILEWCVLSDKAPCIT 146

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
                              +   L     Y   V      G G P S           P 
Sbjct: 147 DWQQEDG------TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAY--LKQAPPS 198

Query: 289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 348
           + P+      GK  +  + W+ LP + QN     Y IF+R     E          +   
Sbjct: 199 KGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV-----DSSH 252

Query: 349 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 381
               + S    T Y V++ A  D G     E  
Sbjct: 253 TEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 19/134 (14%)

Query: 156 EYECVV----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--P 209
            Y   V        G   +    + + PP     V+  +V K  A ++W     + +   
Sbjct: 169 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF 228

Query: 210 ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG 269
           I +Y I  R         V+       VD  +   E ++ + L   + Y  ++ A  + G
Sbjct: 229 IRNYTIFYR-TIIGNETAVN-------VD--SSHTEYTLSS-LTSDTLYMVRMAAYTDEG 277

Query: 270 YGEPSSPSPQYNTP 283
             +   P   + TP
Sbjct: 278 GKD--GPEFTFTTP 289

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score =  140 bits (356), Expect = 7e-40
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
               + N  GPG  ++ +T+ +  D+P   PQ V     NS +I V+W P         G
Sbjct: 2   SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPP--SGTQNG 59

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
            + G++I++ K     E            W L  GL+  ++Y  +V A    G GP S  
Sbjct: 60  FITGYKIRHRKTTRRGEMETL---EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116

Query: 484 YLERT 488
           Y   T
Sbjct: 117 YTAET 121

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score =  100 bits (252), Expect = 1e-25
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPI 526
               + N  G G  ++     T    P  PP  V ++ +N  ++ V+W       +   I
Sbjct: 2   SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61

Query: 527 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
            GYK+R  +  +      +      N L      L  G +Y  +V A +  G G  S+  
Sbjct: 62  TGYKIRHRKTTRR----GEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW- 116

Query: 587 ITFQMGE 593
            T +  E
Sbjct: 117 YTAETPE 123

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 261 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 320
              +GN  G G  +       T +D P   P  +         + +SW P P   QN   
Sbjct: 3   SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61

Query: 321 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 380
             YKI  RK      + ETL                   ++Y  +V A+   G GP S  
Sbjct: 62  TGYKIRHRK-TTRRGEMETL----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116

Query: 381 VTIFSAED 388
            T  + E+
Sbjct: 117 YTAETPEN 124

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           P   P  V +  V+  S  + W     G  NG  IT YKI  R               G+
Sbjct: 28  PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGF-ITGYKIRHRKTTRR----------GE 76

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                           L   S Y F+V A    G G PS+ 
Sbjct: 77  METLEPNNLWYLFTG-LEKGSQYSFQVSAMTVNGTGPPSNW 116

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score =  135 bits (342), Expect = 9e-38
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 3/135 (2%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  +   +A+  P   PQ V      ST + V+W P     ++  G +  + + Y
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPP--ADSRNGVITQYSVAY 58

Query: 433 WKED-NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
              D       V        +   +VGL+  T+Y V V A+ + G GPES   L RT   
Sbjct: 59  EAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118

Query: 492 APQKPPSAVHIKGIN 506
            P  PP  V     +
Sbjct: 119 VPSGPPRKVESGPSS 133

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 94.4 bits (235), Expect = 4e-23
 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S     RT +  P  PP  V    +  TTV V+W           I  Y V    
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
           VD +    +            D+V L     Y + V A ++ G G  SSP +  +  E+
Sbjct: 61  VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSP-VLVRTDED 118

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 76.3 bits (188), Expect = 8e-17
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S       T    P   P ++         + +SW P P + +N     Y + + 
Sbjct: 1   GSSGSSGTIEAR-TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59

Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388
             +  +     +        +   +     +TEY V V+A  DVGPGPES  V + + ED
Sbjct: 60  AVDGEDRGRHVVDGISR-EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118

Query: 389 MPQVAPQGV 397
           +P   P+ V
Sbjct: 119 VPSGPPRKV 127

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           P   P  V  V +  T+  + W      + NG  IT Y +                 I +
Sbjct: 18  PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
           E   +       +   L  W+ Y   V A  ++G G  SSP     T  D P   P 
Sbjct: 77  EHSSWD------LVG-LEKWTEYRVWVRAHTDVGPGPESSPV-LVRTDEDVPSGPPR 125

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score =  135 bits (341), Expect = 1e-37
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  V + +  D+P  APQ +     NS +I + W P         G++ G++I+Y
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPA--PATQNGQITGYKIRY 58

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            K     +     L   T+   LI GL   T+Y  +V A    G GP ++     T+   
Sbjct: 59  RKASRKSDVT-ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESD 117

Query: 493 PQKPP 497
             +  
Sbjct: 118 LDETR 122

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S     RT    P   P  + ++  N  ++ + W+  +P+ +   I GYK+R  +
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
             +        +   G  L   I  L  G  Y+ RV A +  G G  +   ++ +  E 
Sbjct: 61  ASRKSDVTETLV--SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW-LSAETFES 116

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S       T +D P  AP  +         + I W+P     QN     YKI +R
Sbjct: 1   GSSGSSGDVAVR-TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59

Query: 329 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
           K +     +ETL   G     ++          TEY  +V A+   G GP ++ ++  + 
Sbjct: 60  KASRKSDVTETLVS-GTQLSQLIEGLDR----GTEYNFRVAALTINGTGPATDWLSAETF 114

Query: 387 EDMPQVAP 394
           E       
Sbjct: 115 ESDLDETR 122

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 14/116 (12%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           P   P  + +   +  S  I W        NG+ IT YKI         +   S      
Sbjct: 18  PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKI--------RYRKASRKSDVT 68

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
           E      +    IE  L   + Y F+V A    G G  +       T      +  
Sbjct: 69  ETLVSGTQLSQLIEG-LDRGTEYNFRVAALTINGTGPATDWL-SAETFESDLDETR 122

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  144 bits (364), Expect = 8e-37
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           +G +V + C  +  P  +  W KD   + SG + KI        + I  V   D G Y C
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A+N  G D   G + +   P + ++    I+      +QL+ +    E + V   W  +
Sbjct: 458 KASNDVGSDTCVGSITLKAPPRFVKK-LSDISTVVGEEVQLQATIEGAEPISV--AWFKD 514

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
              I     N   + + N     L+ + A  A+AG+Y C +K+  G      T+ V
Sbjct: 515 KGEIVRESDNIWISYSEN--IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  138 bits (349), Expect = 7e-35
 Identities = 38/227 (16%), Positives = 74/227 (32%), Gaps = 27/227 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSC 60
            G  V   C    +   +  W KDG ++      +         L I    +   G Y+C
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174

Query: 61  TATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           +A+N  G   S  +L +     P +++  P  + +A   +   +C       + +   W 
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI--TWA 232

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +   I      ++       +   L +   +  DAG+Y C   +  GK S    + V+ 
Sbjct: 233 KDNREIRPGGNYKMTLVE---NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289

Query: 179 PP---GLPGGVQVVEVHKT-----------SATIQWTDGATNGRPIT 211
           PP         ++V+  +               + W     +   I 
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY---KDETEIQ 333

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  134 bits (338), Expect = 2e-33
 Identities = 52/231 (22%), Positives = 87/231 (37%), Gaps = 27/231 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSC 60
            G + T  C+       K  W KD   I  GG  K+        L +  V++ D+G Y+C
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 270

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A+NV G D    +L V   P + ++L P   +    + +  C       + V  +W  +
Sbjct: 271 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWYKD 328

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
              I       +          +LE+ N S  D+G+Y C   +  G  S+ T++ V+ PP
Sbjct: 329 ETEIQESSKFRMSFVE---SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 385

Query: 181 ---GLPGGVQVVE----------VHKTSATIQWTDGATNGRPIT---HYKI 215
                P  V+ ++                 + W     + R +     YKI
Sbjct: 386 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELRSGKKYKI 433

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  127 bits (322), Expect = 3e-31
 Identities = 45/236 (19%), Positives = 79/236 (33%), Gaps = 23/236 (9%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIY 58
             +  +    C    +P+ K +W KD   I    +     +     L +  +S +DSG Y
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           +C A N  G   S   L V   P +  + P  +      ++ L C         V   W 
Sbjct: 363 TCEAHNAAGSASSSTSLKVKEPPVF-RKKPHPVETLKGADVHLECELQGTPPFQV--SWH 419

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +   + +    ++ +         + I N   AD GEY+C   + VG  +   ++ ++ 
Sbjct: 420 KDKRELRSGKKYKIMS---ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476

Query: 179 PP-------------GLPGGVQVVEVHKTSATIQWT-DGATNGRPITHYKIIARTN 220
           PP             G    +Q         ++ W  D     R   +  I    N
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  121 bits (306), Expect = 2e-29
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSC 60
            G  +T+ C  +  P+ +  W K+   + S    K+       +L+I+ V   D G Y+C
Sbjct: 19  IGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78

Query: 61  TATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
            A N  G   S   L++     P  + +    +       +   C  +  E L V   W 
Sbjct: 79  KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV--SWY 136

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +G  +     +     +   +   L+I     +  G+Y C   + +G  S+   + +  
Sbjct: 137 KDGELL---KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193

Query: 179 PPGLP 183
               P
Sbjct: 194 HEVPP 198

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
            G  V +    E A      W KD   I+       I  + N   L  S     ++G Y+
Sbjct: 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYT 550

Query: 60  CTATNVHGMDESKGRLIVL 78
           C   N  G  E    L VL
Sbjct: 551 CQIKNEAGTQECFATLSVL 569

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  132 bits (333), Expect = 1e-36
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S V  I SA+D P  AP  V  +  +S+ I+V W  +          +  ++I+Y
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL------EKIVESYQIRY 54

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
           W   + EE A      +    A +  L PDT+Y+++V A N+AG GP S+     T + +
Sbjct: 55  WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAS 114

Query: 493 PQKPPSA 499
              P S 
Sbjct: 115 G--PSSG 119

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S   +  + + AP + P+ V +K ++ + + V W +V      + +  Y++R W 
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE----KIVESYQIRYWA 56

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
              D   A + +        A + +L P  +Y + V A ++ G G  S  
Sbjct: 57  AH-DKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDM 105

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S  +    +  D P +AP+ +G       ++S+ WE +           Y+I + 
Sbjct: 1   GSSGSSGVAVIN-SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYW 55

Query: 329 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
             +D E  +  ++       A +   +P     T+Y ++V A N  G GP S+++  F+ 
Sbjct: 56  AAHDKEEAANRVQVTSQEYSARLENLLP----DTQYFIEVGACNSAGCGPPSDMIEAFTK 111

Query: 387 EDMP 390
           +   
Sbjct: 112 KASG 115

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P   P  V V  +  +  ++ W         +  Y+I         W    +      V 
Sbjct: 18  PSEAPTEVGVKVLSSSEISVHWEHVL-EKI-VESYQI-------RYWAAHDKEEAANRVQ 68

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
             +    A +EN L+P + Y  +V A N  G G PS  
Sbjct: 69  VTSQEYSARLEN-LLPDTQYFIEVGACNSAGCGPPSDM 105

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  144 bits (364), Expect = 3e-36
 Identities = 56/287 (19%), Positives = 93/287 (32%), Gaps = 35/287 (12%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--------NGNLLISPVSRDDS 55
            G +V + C     P P+  W+ DG  I +  R ++ +           L I+ V  +D 
Sbjct: 443 PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDG 502

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           G+Y C A +  G+ E   +L V   P  Y +   K  I A   L + C      +  +  
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSI-- 558

Query: 116 IWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFA-DAGEYECVVKSTVGKISTKT- 172
           +W  +   +              +   G L I N     D   Y CV K+  G  +  + 
Sbjct: 559 VWERDNRAL-------PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611

Query: 173 TVIVEGPPGL--PGGVQVVEVHKTSATIQWT-DGATNGRPITHYKIIARTNWNSTWFNVS 229
            V V   P +      +         T+  +  G      I           +    +  
Sbjct: 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL-------DGQAISED 664

Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
             +    V R       +IE V        F   A N  G+ + ++P
Sbjct: 665 LGITTSRVGRRGS--VLTIEAV-EASHAGNFTCHARNLAGHQQFTTP 708

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  136 bits (345), Expect = 6e-34
 Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 9/183 (4%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKI----FENGNLLISPVSRDDSGIY 58
            G  +T+ C+      P    W  DG  I                 L I  V    +G +
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNF 692

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           +C A N+ G  +    L V   P +  + P     A   + ++ C A       V   W 
Sbjct: 693 TCHARNLAGHQQFTTPLNVYVPPRWILE-PTDKAFAQGSDAKVECKADGFPKPQV--TWK 749

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT-VIVE 177
                      +  ++ NI ++ G L + N    + G Y C   + +G   +    + V+
Sbjct: 750 KAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809

Query: 178 GPP 180
              
Sbjct: 810 AHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  132 bits (334), Expect = 2e-32
 Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 18/213 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD-DSGIYSCTA 62
            G  + + C     P    VW++D   +    ++K+F NG L+I  V R+ D   Y+C A
Sbjct: 540 AGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVA 599

Query: 63  TNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
            N  G        + V+  P        +      + L L CS    + L +   WT +G
Sbjct: 600 KNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD-LPLNIDWTLDG 658

Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP- 180
             I   +   + T  +   G +L I     + AG + C  ++  G     T + V  PP 
Sbjct: 659 QAI--SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR 716

Query: 181 --GLPGGVQVVE----------VHKTSATIQWT 201
               P      +                 + W 
Sbjct: 717 WILEPTDKAFAQGSDAKVECKADGFPKPQVTWK 749

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  121 bits (305), Expect = 7e-29
 Identities = 50/226 (22%), Positives = 75/226 (33%), Gaps = 28/226 (12%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
              G      C     P     W KDG  IG            L I  V ++D G+Y C 
Sbjct: 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCF 407

Query: 62  ATNVHGMDESKGRLIVL--HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
             N     E+   L +     P    Q   + T+    ++ L+C A      ++   W  
Sbjct: 408 VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEI--SWEL 465

Query: 120 NGVRIGNMD-LNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
           +G +I N D     +   +N D    L IT+    D G Y+C+ KS VG       + V 
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525

Query: 178 GPPGL--PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 211
           G P +       +V                 +I W     + R + 
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWE---RDNRALP 568

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  116 bits (292), Expect = 3e-27
 Identities = 41/241 (17%), Positives = 65/241 (26%), Gaps = 38/241 (15%)

Query: 4   EGGNVTIFCNPEAA---PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR-DD 54
            G +  I C   +          W  D            G+  +  +G L I  V   D 
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 211

Query: 55  SGIYSCTATNVHGMDESKGRLIVL--HGPSYYEQLPPKI--------TIAAHRNLQLRCS 104
              Y C   +    +                   +P  +        T +    + L C 
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271

Query: 105 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164
           A    +      W              +    +    G L I +A   D+G+Y CVV ++
Sbjct: 272 AQGYPVPVF--RWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 328

Query: 165 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTS-------------ATIQWTDGATNGRPIT 211
           VG  S +T + V  P           V                  T+ W     +G+ I 
Sbjct: 329 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIG 385

Query: 212 H 212
           H
Sbjct: 386 H 386

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  100 bits (249), Expect = 4e-22
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 16/206 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLLISPVSRDD------S 55
                 I C     P P+ +W + DG  +G   G R+I  +G L+  P   +D      +
Sbjct: 53  NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHA 112

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA--HTEELLDV 113
            +Y+C A N  G   S+   +      YYE    K  +    +  ++C       + ++V
Sbjct: 113 QVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV 172

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KIS 169
              W  +                + +  G L I      D    Y+C  K  +    ++S
Sbjct: 173 -VSWHTDEEENYFPGAEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 230

Query: 170 TKTTVIVEGPPGLPGGVQVVEVHKTS 195
                +V   P      +VV + K  
Sbjct: 231 ATKGRLVITEPISSAVPKVVSLAKFD 256

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII------GSGGRRKIFENGNLLISPVSRDDSGI 57
           +G +  + C  +  PKP+  WKK                    E G L +  + + + G 
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGY 787

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYE 85
           Y C A N  G   S   +I +    ++ 
Sbjct: 788 YLCEAINGIGSGLSAVIMISVQAHHHHH 815

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.9 bits (189), Expect = 8e-15
 Identities = 31/265 (11%), Positives = 64/265 (24%), Gaps = 31/265 (11%)

Query: 45  LLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 102
           + +         +++  A    G     +        GP + ++   +I  +     ++ 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 103 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS------FADAGE 156
           C A          IW  +        + ++         G L               A  
Sbjct: 61  CKASGNP--MPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114

Query: 157 YECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEVHK-TSATIQWTDGATNGRPITHYK 214
           Y C+ ++  G I S    V           V    V +  SA I+    +     +    
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV- 173

Query: 215 IIARTNWNSTWFNVSEHVIGKEV---DRYTGRKEAS--IENVLVPWSTYEFKVIAGNELG 269
                    +W    E           +Y         I  V        ++    + L 
Sbjct: 174 ---------SWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 224

Query: 270 YGEPSSPSPQYNTPADKPYQAPSRI 294
                S +       +    A  ++
Sbjct: 225 GETRLSATKGRLVITEPISSAVPKV 249

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  135 bits (342), Expect = 7e-36
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 27/241 (11%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIY 58
              G + T  C+       K  W KD   I  GG  K+        L +  V++ D+G Y
Sbjct: 17  LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           +C A+NV G D    +L V   P + ++L P   +    + +  C       + V  +W 
Sbjct: 77  TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWY 134

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +   I     +     +      +LE+ N S  D+G+Y C   +  G  S+ T++ V+ 
Sbjct: 135 KDETEI---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191

Query: 179 PPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT---HYKIIARTNWN 222
           PP     P  V+ ++                 + W     + R +     YKI++     
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELRSGKKYKIMSENFLT 248

Query: 223 S 223
           S
Sbjct: 249 S 249

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  127 bits (321), Expect = 4e-33
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 17/184 (9%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIY 58
             +  +    C    +P+ K +W KD   I    + ++        L +  +S +DSG Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           +C A N  G   S   L V   P + ++ P  +      ++ L C         V   W 
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQV--SWH 227

Query: 119 HNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 174
            +   +              I  +  L  + I N   AD GEY+C   + VG  +   ++
Sbjct: 228 KDKREL-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280

Query: 175 IVEG 178
            ++ 
Sbjct: 281 TLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 87.1 bits (216), Expect = 4e-19
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 57
              +G +V + C  +  P  +  W KD   + SG + KI        + I  V   D G 
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 262

Query: 58  YSCTATNVHGMDESKGRLIV 77
           Y C A+N  G     G + +
Sbjct: 263 YQCKASNDVGSYTCVGSITL 282

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  134 bits (339), Expect = 1e-35
 Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 43/320 (13%)

Query: 166 GKISTKTTVIVEGPPGL-PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 224
              S+   V+ +GP    P  ++  +V  TS + QWT    N   +T Y++       + 
Sbjct: 6   HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP--NV-QLTGYRVRVTPKEKTG 62

Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
                     KE++         +   L+  + YE  V A  +     P+          
Sbjct: 63  PM--------KEINLAPDSSSVVVSG-LMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113

Query: 285 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
                 P R          ++ISW       +      +++     N       T+K   
Sbjct: 114 S----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQRTIK--P 162

Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF 402
           +V    +    P     T+Y++ +  +ND        +     +  +   AP  +     
Sbjct: 163 DVRSYTITGLQP----GTDYKIYLYTLNDNARSSPVVIDA---STAID--APSNLRFLAT 213

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
              ++ V+W P        R R+ G+ IKY K  +P    V          A I GL+P 
Sbjct: 214 TPNSLLVSWQPP-------RARITGYIIKYEKPGSPPREVVPRPRPGVTE-ATITGLEPG 265

Query: 463 TKYYVKVMAYNNAGEGPESE 482
           T+Y + V+A  N  +     
Sbjct: 266 TEYTIYVIALKNNQKSEPLI 285

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  121 bits (305), Expect = 6e-31
 Identities = 51/279 (18%), Positives = 82/279 (29%), Gaps = 36/279 (12%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
           LS  W P P    N     Y++    K  T    + +    +    VV   +      T+
Sbjct: 37  LSAQWTP-P----NVQLTGYRVRVTPKEKTG-PMKEINLAPDSSSVVVSGLMV----ATK 86

Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
           YEV V A+ D      ++ V            P+         T I ++W          
Sbjct: 87  YEVSVYALKDTLTSRPAQGVVTTLENV---SPPRRARVTDATETTITISWRTKT------ 137

Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
              + G ++     +                   I GLQP T Y + +   N+       
Sbjct: 138 -ETITGFQVDAVPANGQTPIQRTIKPDVRS--YTITGLQPGTDYKIYLYTLNDNARSSPV 194

Query: 482 ERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS 541
                          PS +      P ++ V+W+   P      I GY ++  +      
Sbjct: 195 V-----IDASTAIDAPSNLRFLATTPNSLLVSWQ--PP---RARITGYIIKYEKPGSPPR 244

Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
                  P     +A I  L PG  Y + V+A  N    
Sbjct: 245 EV--VPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  104 bits (261), Expect = 5e-25
 Identities = 36/217 (16%), Positives = 72/217 (33%), Gaps = 23/217 (10%)

Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
              S  + +   +     AP  +       T+++  W P          +L G+R++   
Sbjct: 6   HHHSSGLEV-LFQGPAIPAPTDLKFTQVTPTSLSAQWTPPN-------VQLTGYRVRVTP 57

Query: 435 EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ 494
           ++         L+  + +  ++ GL   TKY V V A  +      ++            
Sbjct: 58  KEKTGPMKEINLAPDSSS-VVVSGLMVATKYEVSVYALKDTLTSRPAQ---GVVTTLENV 113

Query: 495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
            PP    +     TT+ ++WR  + +   E I G++V     +              +  
Sbjct: 114 SPPRRARVTDATETTITISWR--TKT---ETITGFQVDAVPANGQTPIQRTI---KPDVR 165

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
              I  L PG  Y + +   ++      SSP +    
Sbjct: 166 SYTITGLQPGTDYKIYLYTLNDNAR---SSPVVIDAS 199

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 32/229 (13%)

Query: 156 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT 211
           +YE  V +       + +      +E     P   +V +  +T+ TI W         IT
Sbjct: 86  KYEVSVYALKDTLTSRPAQGVVTTLENVSP-PRRARVTDATETTITISWR--TKTE-TIT 141

Query: 212 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 271
            +++ A      T     +  I  +V  YT      I   L P + Y+  +   N+    
Sbjct: 142 GFQVDAVPANGQTPI---QRTIKPDVRSYT------ITG-LQPGTDYKIYLYTLNDNARS 191

Query: 272 EPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN 331
            P        T  D    APS +         L +SW+P       A    Y I + K  
Sbjct: 192 SPVVIDAS--TAID----APSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPG 240

Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 380
                   +      G+    I      TEY + V A+ +         
Sbjct: 241 SPP---REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  131 bits (331), Expect = 2e-35
 Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 33/218 (15%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
            PG P  ++V EV KTS T+ W       G  I +Y +  R +    +  V+ +      
Sbjct: 5   TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC----- 59

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
                +    ++  L    +Y F+V+A NE G G P+  +      +++P   P +I   
Sbjct: 60  ----HKTSWKVDQ-LQEGCSYYFRVLAENEYGIGLPAETAESV-KASERP-LPPGKITLM 112

Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
                 +S+SWE  P     +  + Y +  + K   ++ +               +    
Sbjct: 113 DVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGSDKWAT------------CATVKVTE 159

Query: 358 Y-------YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
                     EY  +V A N+ G     ++     A+D
Sbjct: 160 ATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 95.9 bits (239), Expect = 6e-23
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 16/181 (8%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
           ++++W+P P     +    Y +  R+     +   T+    +     V            
Sbjct: 22  VTLTWDP-PLLDGGSKIKNYIVEKRESTRKAYS--TVATNCHKTSWKVDQLQE----GCS 74

Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
           Y  +V A N+ G G  +E      A + P   P  +        +++++W   E    + 
Sbjct: 75  YYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPE---HDG 130

Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
             R++G+ ++   + + +              A I GL    +Y  +V A N  G     
Sbjct: 131 GSRILGYIVEMQTKGSDKWATCA---TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPR 187

Query: 482 E 482
           +
Sbjct: 188 Q 188

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 14/201 (6%)

Query: 386 AEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY 445
           A D P   PQ +  +    T++ +TW+P      +   ++  + ++  +      + V  
Sbjct: 2   AMDTPG-PPQDLKVKEVTKTSVTLTWDPPL---LDGGSKIKNYIVEKRESTRKAYSTVAT 57

Query: 446 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI 505
               T     +  LQ    YY +V+A N  G G  +E        + P  PP  + +  +
Sbjct: 58  NCHKTS--WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDV 114

Query: 506 NPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 564
              +V ++W    P  +    I+GY V +     D               +A I  L  G
Sbjct: 115 TRNSVSLSWE--KPEHDGGSRILGYIVEMQTKGSDKW----ATCATVKVTEATITGLIQG 168

Query: 565 KRYHMRVLAFSNGGDGRMSSP 585
           + Y  RV A +  G       
Sbjct: 169 EEYSFRVSAQNEKGISDPRQL 189

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 230
            +V     P  PG + +++V + S ++ W       G  I  Y +  +T  +  W   + 
Sbjct: 95  ESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT 154

Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                +V   T      I   L+    Y F+V A NE G  +P   S
Sbjct: 155 V----KVTEAT------ITG-LIQGEEYSFRVSAQNEKGISDPRQLS 190

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 492 APQKP--PSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTII 548
           A   P  P  + +K +  T+V +TW    P  +    I  Y V   E  +   +A  T+ 
Sbjct: 2   AMDTPGPPQDLKVKEVTKTSVTLTWD--PPLLDGGSKIKNYIV---EKRESTRKAYSTVA 56

Query: 549 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
              +     +  L  G  Y+ RVLA +  G G  +  A + 
Sbjct: 57  TNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESV 97

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score =  124 bits (312), Expect = 1e-33
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
           S   +  S ED+P VAP  V     NST   V W+P+    ++IRG L G+RI YWK  +
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVP--LKSIRGHLQGYRIYYWKTQS 59

Query: 438 PEETAVYYLSR------TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
             +    ++ +       ++   ++ GL+P + Y + V   N  GEGP S   +  T   
Sbjct: 60  SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT--- 116

Query: 492 APQKPPSA 499
                PS+
Sbjct: 117 PEGSGPSS 124

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
           S      +    P   P  V +  +N T   V W  V        + GY++  W+     
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61

Query: 541 SRANDTIIPV-----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
            R    I        G+     +  L P   Y + V   +  G+G  S     F   E  
Sbjct: 62  KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD-RVFNTPEGS 120

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
           SS S  + +  D P  AP  +           + W+P+P +        Y+I++ K   +
Sbjct: 2   SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60

Query: 334 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDM 389
             ++    E   +          +P    ++ Y + V+ +N  G GP S      + E  
Sbjct: 61  SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120

Query: 390 P 390
            
Sbjct: 121 G 121

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           P   PG V+V  V+ T A + W      +  G  +  Y+I      +S+  N   H+  K
Sbjct: 14  PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH-LQGYRIYYWKTQSSSKRNR-RHIEKK 71

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
            +     +    +   L P+S Y   V   N  G G  S     +NTP    
Sbjct: 72  ILTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  131 bits (332), Expect = 2e-33
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYS 59
            A EG +  + C     P P F W +   +I     +  +    NLLIS V+ DDSG Y+
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C  T  +    +   L V   P ++   P  +      +++  C+   + +  V   W  
Sbjct: 292 CVVTYKNENISASAELTV-LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV--NWMK 348

Query: 120 NGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
           NG  +       + +    I  G  L I     +D G Y+CV ++  G   +   +IV  
Sbjct: 349 NGDVV-------IPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

Query: 179 P 179
           P
Sbjct: 402 P 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  128 bits (324), Expect = 2e-32
 Identities = 49/232 (21%), Positives = 73/232 (31%), Gaps = 32/232 (13%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIY 58
           A  G  V + C     P P   W+K+   +       R  +  +G L IS +   DSG+Y
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVY 192

Query: 59  SCTATNVHGMDESKG-RLIVLHGPSYYE-----QLPPKITIAAHRNLQLRCSAHTEELLD 112
            C+A N           + +L  P  +      Q P  +     ++  L C         
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS 252

Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
               W           +         + G  L I+N +  D+G Y CVV      IS   
Sbjct: 253 F--TWLRGEE-----VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305

Query: 173 TVIVEGPPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 211
            + V  PP     P  +   E            K   T+ W     NG  + 
Sbjct: 306 ELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM---KNGDVVI 354

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  104 bits (262), Expect = 2e-24
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 4   EGGNVTIFCNPEA-APKPKFVWKKDGNII--GSGGRRKIFENGNLLISPV-----SRDDS 55
            GGNV + C+ E+    P   WKKDG I+  G   R++   NG+LLI  +      + D 
Sbjct: 35  RGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDE 94

Query: 56  GIYSCTAT-NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
           G+Y C A+    G   S+   +++ GP  +      IT      + L+C    + +  + 
Sbjct: 95  GLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH 154

Query: 115 YIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVG-KISTKT 172
             W  N   +  +  +      + +   G L+I+     D+G Y C  ++    +   + 
Sbjct: 155 --WQKNQQDLNPIPGD----SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA 208

Query: 173 TVIVEGPPGLPGGVQVVE 190
            V +   PGL   +  ++
Sbjct: 209 EVRILSDPGLHRQLYFLQ 226

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score =  121 bits (305), Expect = 9e-33
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  V   ++E  P  AP+ V +R  +ST I V W   E       G++ G+R+ Y
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE----EPNGQIQGYRVYY 56

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
             +           +        I  L P   Y VKV+A+ + G+GP S      T    
Sbjct: 57  TMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT---Q 113

Query: 493 PQKPPSA 499
               PS+
Sbjct: 114 TGSGPSS 120

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 87.1 bits (216), Expect = 1e-20
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S   L +T  +AP   P  V  + ++ TT+ V W+   P      I GY+V    
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTM 58

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
            D      N     V ++    I +L P K Y ++VLAF++ GDG +SS 
Sbjct: 59  -DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 9/124 (7%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S P     T    P  AP  +         + + W+  P E+ N     Y++++ 
Sbjct: 1   GSSGSSGPVLTQ-TSEQAPSSAPRDVQARMLSSTTILVQWKE-P-EEPNGQIQGYRVYYT 57

Query: 329 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
                   +       +  I  +   +P       Y VKV A   +G GP S  + + + 
Sbjct: 58  MDPTQHVNNWMKHNVADSQITTIGNLVP----QKTYSVKVLAFTSIGDGPLSSDIQVITQ 113

Query: 387 EDMP 390
               
Sbjct: 114 TGSG 117

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P   P  VQ   +  T+  +QW +       I  Y++    +      N  +H +     
Sbjct: 18  PSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQ- 76

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                   +I N LVP  TY  KV+A   +G G  SS 
Sbjct: 77  ------ITTIGN-LVPQKTYSVKVLAFTSIGDGPLSSD 107

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  123 bits (310), Expect = 2e-32
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%)

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
             Y+  ++ +        R   ++ P    Q P  +       + + C         +  
Sbjct: 1   ATYAAASSAL------VPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATI-- 50

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
            W  +G  + + + + ++  N       LE+T  S  D G Y C   + +G+ S +  ++
Sbjct: 51  SWFRDGQLLPSSNYSNIKIYN-TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSE 230
               P  P     VE + ++A +Q+ +  AT G PI  YK     +    W+S W++  E
Sbjct: 110 QADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 168

Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                           +I   L P +TY  ++ A N  G GE S+ S 
Sbjct: 169 AS---------MEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASE 206

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 79.1 bits (195), Expect = 6e-17
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGN---LLISPVSRDDS 55
           Y  EG  V I C   A P     W +DG ++ S      KI+   +   L ++P S +D 
Sbjct: 29  YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPS 82
           G Y+CTA N  G +  +  L+    PS
Sbjct: 89  GNYNCTAVNRIGQESLEFILVQADTPS 115

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIPV 550
               PS   ++    +T  V +    P      PI+ YK     V +++           
Sbjct: 113 TPSSPSIDQVE-PYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169

Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
                  IV L P   Y +R+ A +  G G +S+ 
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
           + ++  P      P + YK  WR   +  + S+           +V I      T Y V+
Sbjct: 131 VQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189

Query: 366 VQAINDVGPGPESEVVTI 383
           + A+N  G G  S     
Sbjct: 190 LAALNGKGLGEISAASEF 207

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 324 KIFWRKKNDTEFQSET---LKEYGNVGIAVVRIPS--EFYYTEYEVKVQAINDVGPGPES 378
            I W + +     S     +K Y     + + +    E  +  Y     A+N +G     
Sbjct: 49  TISWFR-DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY--NCTAVNRIGQESLE 105

Query: 379 EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP 438
            ++        P +     +S         V ++  E         ++ ++ ++      
Sbjct: 106 FILVQADTPSSPSIDQVEPYSST-----AQVQFDEPE---ATGGVPILKYKAEWRAVGEE 157

Query: 439 EETAVYY--LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              + +Y     +      IVGL+P+T Y V++ A N  G G  S 
Sbjct: 158 VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  122 bits (309), Expect = 3e-32
 Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 13/211 (6%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVD 238
              P    V  +   S  ++W     +G PI  +K+  R       W   ++++   +  
Sbjct: 2   TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61

Query: 239 RYTGRKEASIENV--LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ---APSR 293
             +   ++   +V  L P  TY F+++A       + S+ S ++             P  
Sbjct: 62  WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121

Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR- 352
           +         + + W     +        Y  ++R  +      +   E  +     +  
Sbjct: 122 LEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180

Query: 353 -IPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
                   T YE K+Q+ +       S +  
Sbjct: 181 LET----ATMYEFKLQSFSAASASEFSALKQ 207

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 91.0 bits (226), Expect = 5e-21
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 18/191 (9%)

Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEFYY---- 359
            + W   PR     P + +K+ +R     + +Q+               +   F      
Sbjct: 19  MLRWMV-PRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTD 76

Query: 360 ----TEYEVKVQAINDVGPGPESE----VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW 411
                 Y  ++ A+       ES           A   P   P+ +    ++ TA+ + W
Sbjct: 77  LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHW 136

Query: 412 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA 471
           +      +     + G+   Y    +  E     +         I  L+  T Y  K+ +
Sbjct: 137 SLAS---DADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQS 193

Query: 472 YNNAGEGPESE 482
           ++ A     S 
Sbjct: 194 FSAASASEFSA 204

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 88.7 bits (220), Expect = 3e-20
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 21/199 (10%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKY--------WKEDN---PEETAVYYLSRTTR 451
           +  ++ + W        N    ++  +++Y        W+  N   P     +       
Sbjct: 14  SDESVMLRWMV----PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKS 69

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESE----RYLERTYRKAPQKPPSAVHIKGINP 507
             A +  L+P   Y  +++A  +  +  ES      YL+      P   P  + I+  + 
Sbjct: 70  FTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSE 129

Query: 508 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 567
           T V + W   S + +E  I GY                TI          I  L     Y
Sbjct: 130 TAVVLHWSLASDA-DEHLITGYYAYYRPSSSAGEYFKATIEGAHAR-SFKIAPLETATMY 187

Query: 568 HMRVLAFSNGGDGRMSSPA 586
             ++ +FS       S+  
Sbjct: 188 EFKLQSFSAASASEFSALK 206

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 163 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNW 221
           S               P  +P  +++ E  +T+  + W+  +  +   IT Y    R + 
Sbjct: 99  SNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSS 158

Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
           ++  +     + G     +       I   L   + YEFK+ + +     E S+  
Sbjct: 159 SAGEY-FKATIEGAHARSFK------IAP-LETATMYEFKLQSFSAASASEFSALK 206

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV--RVWEVDQDMSRANDTIIPV--- 550
           PP+  ++  ++  +V + W    P  +  PI+ +KV  R+    ++    ND I      
Sbjct: 4   PPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61

Query: 551 -----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP 602
                G +  A + DL P   Y  R+LA  +  D + S+ +  F +           
Sbjct: 62  WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV 118

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  119 bits (300), Expect = 5e-32
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S  T   V   P  P  +++ +    S  + WT G  N  PIT + I      +      
Sbjct: 6   SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
                       +G +  +  N L P+  Y F+V+A N +G   PS  S QY T A +P 
Sbjct: 66  -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117

Query: 289 QAPSRIGGGG 298
           + P+     G
Sbjct: 118 KNPTSGPSSG 127

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S         D+P   P  +        ++ ++W P     ++    +    I+Y
Sbjct: 1   GSSGSSGPTPA-PVYDVPN-PPFDLELTDQLDKSVQLSWTP----GDDNNSPITKFIIEY 54

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERTY 489
               +      +    +       + L P   Y  +VMA N+ G+      SE+Y   T 
Sbjct: 55  EDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQY--LTK 112

Query: 490 RKAPQKPPSAVHIKG 504
              P K P++    G
Sbjct: 113 ASEPDKNPTSGPSSG 127

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
           PP  + +      +V ++W   +P  +   PI  + +   +              V  T 
Sbjct: 19  PPFDLELTDQLDKSVQLSW---TPGDDNNSPITKFIIEYED-AMHKPGLWHHQTEVSGTQ 74

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
               ++LSP   Y  RV+A ++ G    S  +  +     +
Sbjct: 75  TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASE 115

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 22/141 (15%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 323
           G    S P+P      D P   P  +     ++ D       +SW P   +  N+P   +
Sbjct: 1   GSSGSSGPTPA--PVYDVP-NPPFDL-----ELTDQLDKSVQLSWTP--GDDNNSPITKF 50

Query: 324 KI-FWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEVV 381
            I +    +         +  G    A +   P    Y  Y  +V A+N +G    SE  
Sbjct: 51  IIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSP----YVNYSFRVMAVNSIGKSLPSEAS 106

Query: 382 TIFSA-EDMPQVAPQGVFSRG 401
             +      P   P    S G
Sbjct: 107 EQYLTKASEPDKNPTSGPSSG 127

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  122 bits (307), Expect = 1e-31
 Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 21/211 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYS 59
               V   C     P P   W K+G       R        +  +L++  V   D G Y+
Sbjct: 29  AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88

Query: 60  CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           C   N  G       L VL    H P     LP   T     +++  C  +++    +  
Sbjct: 89  CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 146

Query: 116 IWTHNGVRIGN---------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
            W  +    G+         + + +            L + N S  D GEY C   + +G
Sbjct: 147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206

Query: 167 KISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 197
                  + V GP       ++VE  +  + 
Sbjct: 207 VAEKAFWLSVHGPRAAEE--ELVEADEAGSV 235

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 79.2 bits (195), Expect = 1e-16
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 20/118 (16%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS---------------GGRRKIFENGNLLIS 48
            G +V   C   +  +P   W K   + GS                    +  +  L ++
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 106
            VS  D G Y C ATN  G+ E    L V    +       +  + A     +    H
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA-----AEEELVEADEAGSVHHHHH 240

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  125 bits (316), Expect = 1e-31
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            A +G  V + C     P P  +W++      +   R+   NG L I    ++D+G Y C
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A N  G + +KG+L   +    + Q+   I +A   ++   C A+        Y W  N
Sbjct: 276 VAENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 332

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
           G  +       L    I I+ G L IT  + +DAG Y+CV ++  G I +   + V
Sbjct: 333 GDPL-------LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  122 bits (308), Expect = 2e-30
 Identities = 51/234 (21%), Positives = 80/234 (34%), Gaps = 38/234 (16%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCT 61
            G  + + C  P  + +  + W  +        RR    E GNL I+ V + D G Y+C 
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175

Query: 62  ATNVHGMDESKGRLIVL----------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
            TN     +  G    L          + P    Q P  +       ++L C A    + 
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP 235

Query: 112 DVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
            +  +W   +G  I             +   G+LEI N    DAG YECV +++ GK   
Sbjct: 236 TI--LWRRADGKPIAR-------KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286

Query: 171 KTTVIVEGPPGL--PGGVQVVEVHKT-----------SATIQWTDGATNGRPIT 211
           K  +     P          V + ++             T +W     NG P+ 
Sbjct: 287 KGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---KNGDPLL 337

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  114 bits (287), Expect = 1e-27
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 12/201 (5%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRD-DSGIYSCT 61
           E   V + C  +  PKP   WK +G  +      R    +G+LLI+  ++  D+G Y C 
Sbjct: 22  EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 81

Query: 62  ATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
           ATN  G   S + +L   +  ++  +    +++   + + L C        +++Y W  N
Sbjct: 82  ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFN 140

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG---KISTKTTVIVE 177
                  +   +         G L I     +D G Y CVV +TV     +   T +I+ 
Sbjct: 141 EYPSYQDNRRFVSQET-----GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195

Query: 178 GPPGLPGGVQVVEVHKTSATI 198
               +      +EV       
Sbjct: 196 NDGVMGEYEPKIEVQFPETVP 216

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 83.0 bits (205), Expect = 3e-17
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           +     +V   C     PKP + W K+G+ + +  R +I E G L I+ V+  D+G+Y C
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQC 364

Query: 61  TATNVHGMDESKGRLIVL 78
            A N HG+  S   L V+
Sbjct: 365 VAENKHGVIFSSAELSVI 382

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score =  117 bits (295), Expect = 2e-31
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 377 ESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED 436
            S    I + E  P   P  V  +   S +I VTW   +  +E   G + G++I Y +  
Sbjct: 2   SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPK--KELQNGVIRGYQIGYRENS 59

Query: 437 ---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 493
              N + + V   +        +  L+   +Y V V A+N AG GP S      T     
Sbjct: 60  PGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT----L 115

Query: 494 QKPPSA 499
           +  PS+
Sbjct: 116 ESGPSS 121

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 480 ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ- 538
            S      T   AP  PP  V ++ +   ++ VTW+      +   I GY++   E    
Sbjct: 2   SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61

Query: 539 -DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
            +   +   +   G++    + +L    +Y + V AF+  G G  SS  I     E 
Sbjct: 62  SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE-INATTLES 117

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
           SS S   +T    P   P  +         + ++W+   +E QN     Y+I +R+ +  
Sbjct: 2   SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61

Query: 334 EFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQV 392
                ++ E    G   V  + +   + +Y V VQA N  G GP S  +   + E  P  
Sbjct: 62  SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSS 121

Query: 393 A 393
            
Sbjct: 122 G 122

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           P G P  V +  V   S  + W        NG  I  Y+I  R N   +    S      
Sbjct: 15  PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSI----V 69

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
           E+      +  +++N L  ++ Y   V A N  G G  SS 
Sbjct: 70  EMKATGDSEVYTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 109

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  123 bits (309), Expect = 3e-31
 Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSC 60
                T+ C     P P+  W KD   +    S GR K   +G L I      D G Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181

Query: 61  TATNVHGMDESKG---RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
            ATN  G+  S      + V +    +  LP    I    N+ + C A    +  V   W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV--KW 239

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
                 +           ++ +   +LE+T+    D+  Y CV  S++G I     + V+
Sbjct: 240 MQGAEDL-------TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVK 290

Query: 178 GPPGLP 183
             P   
Sbjct: 291 SLPKAG 296

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  109 bits (275), Expect = 1e-26
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 17/194 (8%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPV-SRDDSG 56
              GG  +  C     PKP+  W K G  + S     I         L I P+ +  D  
Sbjct: 18  GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDEN 77

Query: 57  IYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PK-ITIAAHRNLQLRCSAHTEEL 110
           +Y C A N  G      +L VL         P     P+   +   R   + C+A     
Sbjct: 78  VYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137

Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KIS 169
            ++   W  + + +     N        +  G L+I ++   D G+YECV  ++ G + S
Sbjct: 138 PEIT--WFKDFLPVDPSASNGRIKQ---LRSGALQIESSEETDQGKYECVATNSAGVRYS 192

Query: 170 TKTTVIVEGPPGLP 183
           +   + V      P
Sbjct: 193 SPANLYVRVQNVAP 206

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  127 bits (321), Expect = 4e-31
 Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 17/177 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           +   V   C PEA       W    ++  S   +    N  L +  V+R+D+  Y C   
Sbjct: 481 DKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQ 540

Query: 64  NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
           N    + S    L VL+GP      PP  +  +  NL L C + +       Y W  NG+
Sbjct: 541 NSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPS--PQYSWRINGI 598

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
              +                +L I   +  + G Y C V +     +      +   
Sbjct: 599 PQQH--------------TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  124 bits (313), Expect = 4e-30
 Identities = 44/230 (19%), Positives = 73/230 (31%), Gaps = 37/230 (16%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           Y   G N+++ C+  + P  ++ W  DGNI              L IS ++  +SG+Y+C
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE--------LFISNITEKNSGLYTC 443

Query: 61  TATNVHGMDESKGRLIVLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
            A N            +      P           +     +   C    +   +  Y+W
Sbjct: 444 QANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ---NTTYLW 500

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
             NG  +      +L   N       L + N +  DA  Y C ++++V    +   T+ V
Sbjct: 501 WVNGQSLPVSPRLQLSNGN-----RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555

Query: 177 EGPP----GLPGGVQVVE----------VHKTSATIQWTDGATNGRPITH 212
              P      P     +               S    W     NG P  H
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR---INGIPQQH 602

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  118 bits (298), Expect = 3e-28
 Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 17/181 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           +   V + C PE        W  + ++  S   +   +N  L +  V+R+D G Y C   
Sbjct: 303 DEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362

Query: 64  NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
           N   +D S    L VL+GP      P         NL L C A +       Y W  +G 
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ--YSWLIDGN 420

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
                                L I+N +  ++G Y C   ++    S  T   +     L
Sbjct: 421 IQ--------------QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466

Query: 183 P 183
           P
Sbjct: 467 P 467

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  114 bits (287), Expect = 8e-27
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 37/230 (16%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
               G N+ + C+  + P  ++ W  +G    S           L I  ++ ++SG Y+C
Sbjct: 214 SYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTC 265

Query: 61  TATNVHGMDESKG--RLIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLDVAYIW 117
            A N            + V   P            +     + L C    +   +  Y+W
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ---NTTYLW 322

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
             N   +      +L       D   L + + +  D G YEC +++ +    +    + V
Sbjct: 323 WVNNQSLPVSPRLQLSN-----DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377

Query: 177 EGPPGLP-----------GGVQVVEVHKTS---ATIQWTDGATNGRPITH 212
              P  P           G    +  H  S   A   W     +G    H
Sbjct: 378 LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWL---IDGNIQQH 424

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  109 bits (273), Expect = 4e-25
 Identities = 42/183 (22%), Positives = 62/183 (33%), Gaps = 19/183 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           +   V   C PE        W  + ++  S   +    N  L +  V+R+D+  Y C   
Sbjct: 125 DKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQ 184

Query: 64  NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
           N      S    L VL+GP      P   +  +  NL L C A         Y W  NG 
Sbjct: 185 NPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWFVNGT 242

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 180
                                L I N +  ++G Y C   ++   +  +T TT+ V   P
Sbjct: 243 FQ--------------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288

Query: 181 GLP 183
             P
Sbjct: 289 PKP 291

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  105 bits (262), Expect = 8e-24
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 30/199 (15%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIFENGN 44
           EG  V +  +        + W K   + G+                    GR  I+ N +
Sbjct: 13  EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS 72

Query: 45  LLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLH-GPSYYEQLPPKITIAAHRNLQLR 102
           LLI  + ++D+G Y+          +E+ G+  V    P           +     +   
Sbjct: 73  LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFT 132

Query: 103 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 162
           C   T+   D  Y+W  N        L       ++     L + N +  D   Y+C  +
Sbjct: 133 CEPETQ---DATYLWWVNNQ-----SLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQ 184

Query: 163 STVG-KISTKTTVIVEGPP 180
           + V  + S    + V   P
Sbjct: 185 NPVSARRSDSVILNVLYGP 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  119 bits (300), Expect = 5e-31
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPV-SRDDSGIY 58
            GG  +  C     P+PK VW K G  + +     I F++G+   L I P+ +  D  IY
Sbjct: 20  SGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIY 79

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELL 111
            C A+N  G      RL V        +  P I        +   R   + C+A      
Sbjct: 80  ECVASNNVGEISVSTRLTV-LREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP 138

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KIST 170
           ++   W  + + +   + N       +   G L+I  +  +D G+YECV  ++ G + S 
Sbjct: 139 EI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196

Query: 171 KTTVIVEGPP 180
              + V G  
Sbjct: 197 PANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 75.6 bits (186), Expect = 8e-16
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------NGNLLISPVSRDDSGI 57
                T+ C     P P+  W KD   + +       +       G L I      D G 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181

Query: 58  YSCTATNVHGMDES-KGRLIVLHGPSYYEQ 86
           Y C ATN  G   S    L V     ++  
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTKHHHHH 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVI 175
           W   G ++ N     +E  + +  G +L I       D   YECV  + VG+IS  T + 
Sbjct: 40  WNKKGKKVSNQRFEVIEFDDGS--GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97

Query: 176 VEGPPGLPGGVQVVEVHKTSATIQ 199
           V     +P G   +++      ++
Sbjct: 98  VLREDQIPRGFPTIDMGPQLKVVE 121

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  119 bits (300), Expect = 7e-31
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 18/200 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYS 59
               V   C     P P   W K+G       R   +    ++ +L++  V   D G Y+
Sbjct: 33  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92

Query: 60  CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           C   N +G       L V+    H P     LP   +     +++  C  +++    +  
Sbjct: 93  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI-- 150

Query: 116 IWTHNGVRIGNMDLNE-------LETPNINI-DGGLLEITNASFADAGEYECVVKSTVGK 167
            W  +  + G+    +       L+   IN  +  +L + N + ADAGEY C V + +G+
Sbjct: 151 QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210

Query: 168 ISTKTTVIVEGPPGLPGGVQ 187
            +    + V      PG  +
Sbjct: 211 ANQSAWLTVLPKQQAPGREK 230

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  117 bits (296), Expect = 1e-30
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 29/189 (15%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
            G    + C     P P   W + G  +    + K+  +G    L +    ++D G+Y+C
Sbjct: 21  LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80

Query: 61  TATNVHGMDESKGRLIVLHGPSYYE--QLPPKITIAAHRNLQLRCSAHTEELLDVAY--- 115
            ATN  G  E+  +L++   P ++    L  K   A    L+L           +     
Sbjct: 81  IATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-------IGRPVP 133

Query: 116 --IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASF-ADAGEYECVVKSTVGKI 168
              W H    +         + NI I        L + N      AG+Y+  + +  G +
Sbjct: 134 AMTWFHGQKLL-------QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186

Query: 169 STKTTVIVE 177
                V ++
Sbjct: 187 DAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSR-DDSG 56
           Y   G  + +       P P   W     ++ +     I    +   L++  V R   +G
Sbjct: 114 YGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAG 173

Query: 57  IYSCTATNVHGMDESKGRLIV 77
            Y    +NV G  ++   + +
Sbjct: 174 KYKVQLSNVFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 33/132 (25%)

Query: 115 YIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKIST 170
             W   G  +       +++    +  DG    L +      D G Y C+  + VG++ T
Sbjct: 39  IKWYRFGKEL-------IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91

Query: 171 KTTVIVEGPPGLPGGV-----QVVEVHKT-----------SATIQWTDGATNGRPIT--- 211
            + ++++  P    G          V  T              + W       + +    
Sbjct: 92  SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---GQKLLQNSE 148

Query: 212 HYKIIARTNWNS 223
           +  I    ++  
Sbjct: 149 NITIENTEHYTH 160

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  117 bits (296), Expect = 1e-30
 Identities = 49/181 (27%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLL-ISPVSRDDSGIYS 59
           A      T  C  E+ P+P+  W ++  +I     R  I ENG LL I  V   D GIY 
Sbjct: 19  ALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYC 78

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           CTA N  G        + +       + P  + I       L C+        V   W  
Sbjct: 79  CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSV--SWIK 136

Query: 120 NGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKT---TVI 175
               +        E   I + + G L I N    DAG+Y CV K+++G   +K     V 
Sbjct: 137 GDSAL-------RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

Query: 176 V 176
           V
Sbjct: 190 V 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
              EG    + C     PKP   W K  + +    R  + E+G+L I  V ++D+G Y C
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRC 170

Query: 61  TATNVHGMDESKG-RLIV 77
            A N  G   SK  +L V
Sbjct: 171 VAKNSLGTAYSKLVKLEV 188

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  122 bits (308), Expect = 2e-30
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 13/178 (7%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           YA  G  VT+ C     P P+  W+K     GS   + +     L I  V  +D G Y C
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRKLD---GSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
            A N+ G D  +GR+I+ H    +  +          +L+  C A  +     A  W  +
Sbjct: 275 EAENIKGRDTYQGRIII-HAQPDWLDVITDTEADIGSDLRWSCVASGKP--RPAVRWLRD 331

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
           G  +            I + GG L  +     D+G Y+CV ++  G +     + V+ 
Sbjct: 332 GQPLA-------SQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  118 bits (296), Expect = 6e-29
 Identities = 47/236 (19%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
           EG  V   C+ P   P   + W  +     I   G R      GNL I+     D G YS
Sbjct: 115 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYS 174

Query: 60  CTATNVHGMDESK-----------GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 108
           C AT+                         + PS   + P        + + L C A   
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN 234

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
            +  +   W                T        LL I N  F D G YEC  ++  G+ 
Sbjct: 235 PVPQI--KWRKLDGSQ---------TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 283

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSA-------------TIQWTDGATNGRPIT 211
           + +  +I+   P     +   E    S               ++W     +G+P+ 
Sbjct: 284 TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL---RDGQPLA 336

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  106 bits (266), Expect = 6e-25
 Identities = 39/178 (21%), Positives = 60/178 (33%), Gaps = 7/178 (3%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLLI-SPVSRDDSGIYS 59
                 VT+ C   A P   + WK +G  +      R     G+L+I +PV   D+G Y 
Sbjct: 19  GSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78

Query: 60  CTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           C ATN  G   S +  L       +  +    + I     +   CS        ++Y W 
Sbjct: 79  CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWL 137

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
            N        +       ++   G L I     +D G Y C   S +  I+       
Sbjct: 138 LNEFPN---FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  117 bits (294), Expect = 2e-30
 Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 23/189 (12%)

Query: 4   EGGNVTIFCNPEAAPKP--KFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIY 58
           EG  + + C+P         + W  +   +       R     NGNL I+ V   D G Y
Sbjct: 22  EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81

Query: 59  SCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 109
           SC  ++         + I L           P+        +     +N+ L C A    
Sbjct: 82  SCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP 141

Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
           + D+   W      +         T  I+  G +L+I N    D G YEC  ++  GK  
Sbjct: 142 VPDI--RWRKVLEPM-------PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDK 192

Query: 170 TKTTVIVEG 178
            +  + V+ 
Sbjct: 193 HQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           YA  G NVT+ C     P P   W+K    +             L I  +  +D GIY C
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPM-PSTAEISTSGAVLKIFNIQLEDEGIYEC 182

Query: 61  TATNVHGMDESKGRLIV 77
            A N+ G D+ + R+ V
Sbjct: 183 EAENIRGKDKHQARIYV 199

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  117 bits (294), Expect = 2e-30
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 17/191 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDG-----------NIIGSGGRRKIFENGNLLISPVSR 52
           E   V + C       P+  WK D             I  S   R  F    +    V+R
Sbjct: 18  ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77

Query: 53  DDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
           +D+G Y+C  +   G    + ++ ++   P     +    +        L CS       
Sbjct: 78  EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP 137

Query: 112 DVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
              Y W  +G+ +     +       +  +N   G L     S +D GEY C  ++  G 
Sbjct: 138 -SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196

Query: 168 ISTKTTVIVEG 178
             T   V +E 
Sbjct: 197 PMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 76.5 bits (188), Expect = 4e-16
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 2   AGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPV 50
           A  G    + C+  + +P  ++ W KDG ++ +  +                G L+  P+
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178

Query: 51  SRDDSGIYSCTATNVHGMDESKGRLIV 77
           S  D+G YSC A N +G   +   + +
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVRM 205

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  121 bits (306), Expect = 3e-30
 Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
              G ++ + C     P P   W K G  + S   +    N  L I+ VS +DSG Y C 
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCL 293

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
           A+N  G       + V     Y+   P  + +A   + +L C A+      V   W  NG
Sbjct: 294 ASNKMGSIRHTISVRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV--QWMVNG 350

Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
             + +   N    PN  + G  +   +   +    Y+C   +  G +     V V
Sbjct: 351 EPLQSAPPN----PNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  118 bits (296), Expect = 8e-29
 Identities = 47/192 (24%), Positives = 66/192 (34%), Gaps = 23/192 (11%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSR-DDSGIYSC 60
           EG  +T+ CN P   P P   W        +  +R     NG+L  S V   D    YSC
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189

Query: 61  TATNVHGMDESKG---RLIVLHGPSYYEQLPPKI---------TIAAHRNLQLRCSAHTE 108
            A         +     L VL      E+ P  +          +    +L L C A   
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
              D+   W   G  + +                 L ITN S  D+GEY C+  + +G I
Sbjct: 250 PTPDI--AWYKKGGDLPSDKAK------FENFNKALRITNVSEEDSGEYFCLASNKMGSI 301

Query: 169 STKTTVIVEGPP 180
               +V V+  P
Sbjct: 302 RHTISVRVKAAP 313

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 99.2 bits (247), Expect = 2e-22
 Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 18/192 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFE-NGNLLISPVS----RDDSG 56
              N+ I C  +  P P F W ++          R  +   +G L+I   S     +  G
Sbjct: 31  PRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEG 90

Query: 57  IYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
            Y C A N  G   S + RL V   P + ++    + +     L L+C+     L     
Sbjct: 91  EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNP-PPGLPSPVI 149

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KISTK 171
            W  + +     D    +  N     G L  +N    D   +Y C  +       +    
Sbjct: 150 FWMSSSMEPITQDKRVSQGHN-----GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204

Query: 172 TTVIVEGPPGLP 183
            T+ V    G+ 
Sbjct: 205 FTLKVLTTRGVA 216

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYS 59
              G +  + C     PKP   W  +G  +        +      ++          +Y 
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383

Query: 60  CTATNVHGMDESKGRLIVL 78
           C  +N HG   +   + VL
Sbjct: 384 CNTSNEHGYLLANAFVSVL 402

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  118 bits (298), Expect = 6e-30
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
           +G +  + C   ++P P   W      +   S  R  +  N NL I  +++ D GIY C 
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171

Query: 62  ATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN--LQLRCSAHTEELLDVAYIWT 118
                 G  + +  +++++ P             A R   +   C A       +   W 
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI--SWF 229

Query: 119 HNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
            NG  I        E     +      L + N   +D G Y C   +  G+   +  + V
Sbjct: 230 RNGKLI-------EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

Query: 177 EGPP 180
               
Sbjct: 283 FVQH 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  109 bits (275), Expect = 7e-27
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 57
               G +    C     P+    +   G  I S  R  + + G    L I   + +D+GI
Sbjct: 15  ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 74

Query: 58  YSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           Y C AT+  G  +     L +      + ++          + ++ C   +     V+  
Sbjct: 75  YRCQATDAKGQTQEATVVLEIYQKL-TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS-- 131

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKT-TV 174
           W ++   +  +     +     +    L+I N + +D G Y C  +    G+I  +   V
Sbjct: 132 WLYHNEEVTTIS----DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187

Query: 175 IVEGPP 180
           IV  PP
Sbjct: 188 IVNVPP 193

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 91.4 bits (227), Expect = 1e-20
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSC 60
           A  G  +T  C    +P+P   W ++G +I    +  +   N  L +  +   D G Y C
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 265

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
            ATN  G DE +  L V         +    
Sbjct: 266 RATNKAGEDEKQAFLQV--------FVQHHH 288

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  116 bits (291), Expect = 7e-30
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 18/199 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGRRKIFENGNLLISPVSR 52
           E  ++ + C       P+  WK            +  I      R  F +  +  S V+R
Sbjct: 15  ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR 74

Query: 53  DDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
            D+G Y+C  +   G +  +  + +    P     +    ++       L CS H     
Sbjct: 75  KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPP 134

Query: 112 DVAYIWTHNGVRIGNMDLNEL-----ETPNINIDGGLLEITNASFADAGEYECVVKSTVG 166
              Y W  +G+ +   D  +       +  I+   G L     +  D+GEY C  ++  G
Sbjct: 135 -SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193

Query: 167 KISTKTTVIVEGPPGLPGG 185
                    ++      GG
Sbjct: 194 TAMRSEAAHMDAVELNVGG 212

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  119 bits (298), Expect = 1e-29
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 14/191 (7%)

Query: 1   YAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
              +   + ++C    A       W K+   +   G +      NL+I     +DSG Y 
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYD 198

Query: 60  CTATNVHGMDESKGRLIVL--------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
           C         ++   +               +   L PKI +       + C+A +  LL
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258

Query: 112 D--VAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGE-YECVVKSTVG 166
              V   W +    I  +D     + T +  I    L   N +    G  Y C   +   
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318

Query: 167 KISTKTTVIVE 177
             +  TTV++E
Sbjct: 319 DKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 91.0 bits (225), Expect = 4e-20
 Identities = 51/292 (17%), Positives = 81/292 (27%), Gaps = 36/292 (12%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFV---------WKKDGNIIGSGGRRKIFENGNLLISPVS 51
            A  G   +  C P                  W+K G       RR   +NG+L I+  +
Sbjct: 40  MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYT 97

Query: 52  RDDSG-IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
            +DS   Y CT T  +G          +  P        ++       + L C       
Sbjct: 98  SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAK 156

Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
                 W  N   +       ++    +  G  L I N    D+G Y+C V     +I  
Sbjct: 157 HYNNITWYKNNQEL------IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210

Query: 171 KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT-----HYKIIARTNWNSTW 225
              V           V   + H+    +      T G P           +   +    W
Sbjct: 211 DIVVSRCKIL----TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266

Query: 226 FNVSEHVIGKEVDRYTGRKEAS--------IENVLVPWSTYEFKVIAGNELG 269
            N S  +IG +   Y+    +          ENV   +    +     N   
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  115 bits (290), Expect = 1e-29
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 19/192 (9%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPV----- 50
              +G   T+ C  E  P P   W K G  + +        R +  +G+L    +     
Sbjct: 20  IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79

Query: 51  SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 109
           SR D G+Y C A N  G   S    L V      + Q P  + +A      + C      
Sbjct: 80  SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQP-PRG 138

Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
             +    W  +G  +      + +   I I GG L IT    +DAG+Y CV  + VG+  
Sbjct: 139 HPEPTISWKKDGSPL------DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERE 192

Query: 170 TKT-TVIVEGPP 180
           ++   + V   P
Sbjct: 193 SEVAELTVLERP 204

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 93.0 bits (231), Expect = 8e-22
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 2   AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
              G    + C P    P+P   WKKDG+ +     R     G L+I+   + D+G Y C
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182

Query: 61  TATNVHGMDESK-GRLIVLHGPS 82
             TN+ G  ES+   L VL  PS
Sbjct: 183 VGTNMVGERESEVAELTVLERPS 205

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  114 bits (288), Expect = 1e-29
 Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 30/192 (15%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENG--NLLISPVSRDDSG 56
             EG   T   +    P P+  W +DG +I +     +   F +G   L I  V++ +SG
Sbjct: 17  VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSG 76

Query: 57  IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEE 109
            YS  ATN  G   S   L+V    +     PP         T+     ++L+       
Sbjct: 77  RYSLKATNGSGQATSTAELLVKAETA-----PPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131

Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTV 165
              V   +  +G  I         + +  I    D   L I  A   D+G Y     ++V
Sbjct: 132 TPVV--KFYRDGAEI-------QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182

Query: 166 GKISTKTTVIVE 177
           G+ ++   ++V+
Sbjct: 183 GRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 143
           Q    + +                + +V   W  +G  I     + L    I+   G   
Sbjct: 10  QPLQSVVVLEGSTATFEAHISGFPVPEV--SWFRDGQVI---STSTLPGVQISFSDGRAK 64

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
           L I   + A++G Y     +  G+ ++   ++V+     P
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  114 bits (287), Expect = 2e-29
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 22/183 (12%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
           +G +  + C   ++P P   W      +   S  R  +  N NL I  +++ D GIY C 
Sbjct: 16  QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75

Query: 62  ATN-VHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAH-----TEELLDV 113
                 G  + +  +++++ P      Q     T      +   C A             
Sbjct: 76  GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA------ 129

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
              W  NG  I   +   L+          L + N   +D G Y C   +  G+   +  
Sbjct: 130 -ISWFRNGKLIEENEKYILKG-----SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183

Query: 174 VIV 176
           + V
Sbjct: 184 LQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 92.9 bits (231), Expect = 5e-22
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYS 59
            A  G  +T  C    +P+P   W ++G +I    +  +   N  L +  +   D G Y 
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 168

Query: 60  CTATNVHGMDESKGRLIVL 78
           C ATN  G DE +  L V 
Sbjct: 169 CRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 18/103 (17%)

Query: 85  EQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
            ++          + ++ C                  W ++   +  +  N        +
Sbjct: 6   REVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNEEVTTISDNRFAM----L 54

Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 180
               L+I N + +D G Y C  +             VIV  PP
Sbjct: 55  ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 97

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score =  111 bits (278), Expect = 4e-29
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK 431
           G    S  +   + E  P VAP  V      +S  +++ W       +   G L+G+RI 
Sbjct: 1   GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPP--TKQQDGELVGYRIS 58

Query: 432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
           +  +       +        + A I     +    V++ A    G GP S+         
Sbjct: 59  HVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI--- 115

Query: 492 APQKPPS 498
                PS
Sbjct: 116 PAHSGPS 122

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 3/121 (2%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIK-GINPTTVHVTWRYVSPSFEEEPIIGYKVRVW 534
           G    S   L  T   AP   P  V +    +   V + W       ++  ++GY++   
Sbjct: 1   GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60

Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
                +S+     +   N   A I          +R+ A + GG G  S P +   +   
Sbjct: 61  WQSAGISKELLEEVG-QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDP-VKIFIPAH 118

Query: 595 K 595
            
Sbjct: 119 S 119

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 327
           G    S       T    P  AP  +         ++ I W   P ++Q+   + Y+I  
Sbjct: 1   GSSGSSGWILAS-TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISH 59

Query: 328 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAE 387
             ++    +    +   N   A   I  + +     V++ A+   G GP S+ V IF   
Sbjct: 60  VWQSAGISKELLEEVGQNGSRAR--ISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPA 117

Query: 388 DMP 390
              
Sbjct: 118 HSG 120

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 14/113 (12%)

Query: 179 PPGLPGGVQVVEVH-KTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
           P   P  V V       +  I+W        +G  +  Y+I            + E V  
Sbjct: 18  PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE-LVGYRISHVWQSAGISKELLEEVGQ 76

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                      A I    V  +T   ++ A    G G  S P  +   PA   
Sbjct: 77  NG-------SRARISV-QVHNATCTVRIAAVTRGGVGPFSDPV-KIFIPAHSG 120

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  115 bits (288), Expect = 2e-28
 Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 33/200 (16%)

Query: 4   EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGI 57
           E G V  +   E      K  +  +   I  G + K+  + N     + +  +  +D G 
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYEQL-----------------PPKITIAAHRNLQ 100
           Y+    +    + S   L+        ++                       +    N+ 
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYE 158
           L+C        +   +W  +   I             +   G+  L IT  S  DAG YE
Sbjct: 241 LKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFSKKDAGIYE 292

Query: 159 CVVKSTVGKISTKTTVIVEG 178
            ++K   GK  ++  ++ E 
Sbjct: 293 VILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 98.1 bits (244), Expect = 1e-22
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 19/197 (9%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
                ++   C  +  PK +F W KD        R ++   GN   +    +  DD GIY
Sbjct: 15  DDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIY 73

Query: 59  SCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV---- 113
           SC  T+  G+  S       L             T+     L +      +    +    
Sbjct: 74  SCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133

Query: 114 -----AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVG 166
                   +  N   I      ++   +I+ + G+  + +      D G Y   ++    
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 190

Query: 167 KISTKTTVIVEGPPGLP 183
              +   ++ +    L 
Sbjct: 191 TNHSTVVLVGDVFKKLQ 207

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  114 bits (286), Expect = 2e-28
 Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 39/284 (13%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
             + W P       A   +  + +           T +    +    V+   P     + 
Sbjct: 31  AFVEWTPPR-----AKVDFILLKYGLVGGEG-GKTTFRLQPPLSQYSVQALRP----GSR 80

Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENI 421
           YEV + A+        S              AP+ +      +T++++ W+  E      
Sbjct: 81  YEVSISAVRGTNESDASSTQFT-----TEIDAPKNLRVGSRTATSLDLEWDNSE------ 129

Query: 422 RGRLIGHRIKYWKEDN-PEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
                 +++ Y           +            +  L P T+Y V + A  N+ +   
Sbjct: 130 -AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP 188

Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
           +        R      P  + +   + T++ + W     S    PI  Y++         
Sbjct: 189 ATM----NARTELD-SPRDLMVTASSETSISLIWT--KAS---GPIDHYRITFTPSS--- 235

Query: 541 SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
              +  +    +     + DL PG  Y + + A         S+
Sbjct: 236 -GISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLEST 278

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  112 bits (281), Expect = 9e-28
 Identities = 50/319 (15%), Positives = 95/319 (29%), Gaps = 48/319 (15%)

Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 225
           G       + V      P  + V +V  T A ++WT        +    +          
Sbjct: 4   GISGGGGGIPV---IDGPTQILVRDVSDTVAFVEWTPPRA---KVDFILLKYGLVGGEGG 57

Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
                              + S++  L P S YE  + A       + SS      T  D
Sbjct: 58  K--------TTFRLQPPLSQYSVQA-LRPGSRYEVSISAVRGTNESDASSTQFT--TEID 106

Query: 286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY-G 344
               AP  +  G      L + W+        A    YK+ +      ++    + +  G
Sbjct: 107 ----APKNLRVGSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIG 157

Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF 402
                 +   +P     TEY V + A+ +      + +    +A      +P+ +     
Sbjct: 158 PTTKTTLTDLVP----GTEYGVGISAVMNSKQSIPATM----NARTELD-SPRDLMVTAS 208

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
           + T+I++ W           G +  +RI +                  R    +  L+P 
Sbjct: 209 SETSISLIWTKAS-------GPIDHYRITFTPSSGISSEVT---VPRDRTSYTLTDLEPG 258

Query: 463 TKYYVKVMAYNNAGEGPES 481
            +Y + + A     +  ES
Sbjct: 259 AEYIISITAERGRQQSLES 277

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  101 bits (252), Expect = 6e-24
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 18/192 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +  R  + T   V W P        R ++    +KY           + L      
Sbjct: 17  GPTQILVRDVSDTVAFVEWTPP-------RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQ 69

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
              +  L+P ++Y V + A     E   S      T        P  + +     T++ +
Sbjct: 70  -YSVQALRPGSRYEVSISAVRGTNESDASS-----TQFTTEIDAPKNLRVGSRTATSLDL 123

Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 572
            W     S  E     YKV    +  +          +G T    + DL PG  Y + + 
Sbjct: 124 EW---DNS--EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGIS 178

Query: 573 AFSNGGDGRMSS 584
           A  N      ++
Sbjct: 179 AVMNSKQSIPAT 190

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 39/232 (16%)

Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
            YE  + +      S  ++         P  ++V     TS  ++W    +       YK
Sbjct: 80  RYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWD--NSEA-EAQEYK 136

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           ++  T     +  V          + T      + + LVP + Y   + A        P+
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTT------LTD-LVPGTEYGVGISAVMNSKQSIPA 189

Query: 275 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           + + +  T  D P        + + I          S+ W        + P  +Y+I + 
Sbjct: 190 TMNAR--TELDSPRDLMVTASSETSI----------SLIWTKA-----SGPIDHYRITFT 232

Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 380
             +    +                +       EY + + A        ES V
Sbjct: 233 PSSGISSEVTV-----PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 25/185 (13%)

Query: 100 QLRCSAHTEELLDVAYIWTH-----NGVRIGNMDLNELETPNINIDGGLLEITNASFAD- 153
            LR  + T   LD+   W +        ++    L   +   + +  G+   T  +  D 
Sbjct: 110 NLRVGSRTATSLDLE--WDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167

Query: 154 -AG-EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 210
             G EY   + +    K S   T+        P  + V    +TS ++ WT    +G PI
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWT--KASG-PI 224

Query: 211 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270
            HY+I    +   +     E  + ++   YT      + + L P + Y   + A      
Sbjct: 225 DHYRITFTPSSGISS----EVTVPRDRTSYT------LTD-LEPGAEYIISITAERGRQQ 273

Query: 271 GEPSS 275
              S+
Sbjct: 274 SLEST 278

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ + ++ ++ T   V W    P      +    ++   V  +  +    +        
Sbjct: 17  GPTQILVRDVSDTVAFVEWT--PPR---AKVDFILLKYGLVGGEGGKTTFRL--QPPLSQ 69

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             +  L PG RY + + A     +   SS   T
Sbjct: 70  YSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  111 bits (280), Expect = 3e-28
 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---RRKIFENGNLL----ISPVSRD 53
              +    T+ C  E  P+P   W KDG  + +      R  F++G L     +      
Sbjct: 20  VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79

Query: 54  DSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC---SAHTEE 109
           D G Y C A N  G   S    L +      +   P    +A      L C       E 
Sbjct: 80  DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE- 138

Query: 110 LLDVAYIWTHNGVRI-GNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGK 167
                 IW  +GV +     ++   +  + I DGG L I+N    D G Y+C+ ++ VG 
Sbjct: 139 ---PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195

Query: 168 I-STKTTVIVEGPPGLP 183
             S+   +IV+      
Sbjct: 196 RESSYAKLIVQVKAAAH 212

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  116 bits (291), Expect = 3e-28
 Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 21/178 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIY 58
               +++ C  +  P P F W K               R    +G L+I     +DSG Y
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
            C   N  G +  +  L V   P   +  PP  T+   R     C      +  V   W 
Sbjct: 286 LCVVNNSVGGESVETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV--SWM 342

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
            +G  IG+                +L I +    D G Y+C V++          + +
Sbjct: 343 KDGKAIGH-------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  110 bits (276), Expect = 3e-26
 Identities = 40/243 (16%), Positives = 65/243 (26%), Gaps = 37/243 (15%)

Query: 1   YAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR 52
           +   G +  I C   +          W  D            G+  +  +G L I  V  
Sbjct: 114 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 173

Query: 53  DDS-GIYSCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLR 102
           +D    Y C   +    +                    P     +   + +     + L 
Sbjct: 174 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233

Query: 103 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 162
           C A           W              +    +    G L I +A   D+G+Y CVV 
Sbjct: 234 CPAQGFPAPSF--RWYKFIEGT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290

Query: 163 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-------------TIQWTDGATNGRP 209
           ++VG  S +T + V  P           V                  T+ W     +G+ 
Sbjct: 291 NSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKA 347

Query: 210 ITH 212
           I H
Sbjct: 348 IGH 350

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 98.5 bits (245), Expect = 3e-22
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 16/191 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLLISPVS------RDDS 55
                 I C     P P+ +W + DG  +G   G R+I  +G L+  P           +
Sbjct: 18  NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHA 77

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA--HTEELLDV 113
            +Y+C A N  G   S+   +      YYE    K  +    +  ++C       + ++V
Sbjct: 78  QVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV 137

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KIS 169
              W  +          E +   + +  G L I      D    Y+C  K  +    ++S
Sbjct: 138 -VSWHTDEEEN-YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 195

Query: 170 TKTTVIVEGPP 180
                +V   P
Sbjct: 196 ATKGRLVITEP 206

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 72.3 bits (177), Expect = 9e-14
 Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
               G      C     P     W KDG  IG            L I  V ++D G+Y C
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SESVLRIESVKKEDKGMYQC 370

Query: 61  TATNVHGMDESKGRLIV 77
              N     E+   L +
Sbjct: 371 FVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 13/120 (10%)

Query: 80  GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
           GP + ++   +I  +     ++ C A    +     IW  +        + ++       
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPM--PEIIWIRSDGTA----VGDVPGLRQIS 56

Query: 140 DGGLLEITNAS------FADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEVH 192
             G L               A  Y C+ ++  G I S    V           V    V 
Sbjct: 57  SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 116

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  113 bits (283), Expect = 5e-28
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 18/183 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
           EG +  I C+  ++  P  +WK  G  +      R  +  N  L I  + + D G Y C 
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173

Query: 62  ATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAH--RNLQLRCSAHTEELLDVAY--- 115
              +   + +   + V ++ P   +     +   A+  +++ L C A         +   
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-------GFPEP 226

Query: 116 --IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
              WT +G  I   +  + E    + D   L I N    D  EY C+ ++  G+      
Sbjct: 227 TMSWTKDGEPI-ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 285

Query: 174 VIV 176
           + V
Sbjct: 286 LKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 99.6 bits (248), Expect = 2e-23
 Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 17/187 (9%)

Query: 4   EGGNVTIFCNPEAAPK-PKFVWKKDGN--IIGSGGRRKIFEN----GNLLISPVSRDDSG 56
            G +    C      K     W       +  +  R  +  N      L I   + DD+G
Sbjct: 16  VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75

Query: 57  IYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           IY C  T   G        + +     +    P         +  + C   +     +  
Sbjct: 76  IYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTII- 133

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--ISTKTT 173
            W H G  +              +    L+I      D G Y C  +             
Sbjct: 134 -WKHKGRDVILKKDVRFIV----LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188

Query: 174 VIVEGPP 180
           VIV  PP
Sbjct: 189 VIVNVPP 195

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDS 55
            A  G +VT+ C+ +  P+P   W KDG  I +            ++  L I  V ++D 
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE 266

Query: 56  GIYSCTATNVHGMDESKGRLIVL 78
             Y C A N  G  ++   L V 
Sbjct: 267 AEYVCIAENKAGEQDASIHLKVF 289

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  109 bits (275), Expect = 5e-28
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 21/181 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDSGIY 58
           +G  V + C+ E   +P   W KDG ++ +  +  I        G L +  V R D+G Y
Sbjct: 16  QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIW 117
            C   +    + S+   + + G  ++   P  + +  +   QL C A    E + +   W
Sbjct: 76  WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV--W 133

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
                +IG    +            +L +T  +   +  + C   +  G  S++T TV +
Sbjct: 134 WRGTTKIGGPAPSPS----------VLNVTGVT--QSTMFSCEAHNLKGLASSRTATVHL 181

Query: 177 E 177
           +
Sbjct: 182 Q 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
                   + C     P+P  + W +    IG             +++      S ++SC
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP------APSPSVLNVTGVTQSTMFSC 163

Query: 61  TATNVHGMDESKGRLIVLH 79
            A N+ G+  S+   + L 
Sbjct: 164 EAHNLKGLASSRTATVHLQ 182

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  114 bits (286), Expect = 5e-28
 Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYS 59
               V   C     P P   W K+G         GG +   +  +L++  V   D G Y+
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 196

Query: 60  CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           C   N  G       L VL    H P     LP   T     +++  C  +++    +  
Sbjct: 197 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 254

Query: 116 IWTH----NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
            W      NG ++G         L        + +  +L + N +F DAGEY C+  +++
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314

Query: 166 GKISTKTTVIVEGPP 180
           G       ++V    
Sbjct: 315 GFSHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  104 bits (261), Expect = 9e-25
 Identities = 48/259 (18%), Positives = 75/259 (28%), Gaps = 59/259 (22%)

Query: 2   AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            G G  V + C P    P    VW KDG  +    R  +     L +   S +DSG YSC
Sbjct: 20  FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-PQRLQVLNASHEDSGAYSC 78

Query: 61  TATNVHGM---------------------DESKGRLIVLHGPSYYEQL---PPKITIAAH 96
                  +                     DE++   +    P +          + + A 
Sbjct: 79  RQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAA 138

Query: 97  RNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 151
             ++ RC A      +         W  NG        + +    +      L + +   
Sbjct: 139 NTVRFRCPAAGNPTPS-------ISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVP 189

Query: 152 ADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA--------------- 196
           +D G Y CVV++  G I    T+ V         +Q       +A               
Sbjct: 190 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 249

Query: 197 ---TIQWT-DGATNGRPIT 211
               IQW      NG  + 
Sbjct: 250 AQPHIQWLKHVEVNGSKVG 268

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 75.4 bits (185), Expect = 6e-15
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----------------GGRRKIFENGNL 45
           A  G +V   C   +  +P   W K   + GS                G      E   L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293

Query: 46  LISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
            +  V+ +D+G Y+C A N  G       L+VL
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.5 bits (136), Expect = 8e-09
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 81  PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINI 139
           P        ++   +   ++L C         +    W  +G  +       + +  + +
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPP--PGGGPMGPTVWVKDGTGL-------VPSERVLV 58

Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
               L++ NAS  D+G Y C  + T   +   +  + + P 
Sbjct: 59  GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  113 bits (284), Expect = 8e-28
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 22/201 (10%)

Query: 4   EGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCT 61
              NV + C      K    VW KD   I    +    +    LLI+  S+ D+GIY   
Sbjct: 20  GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVI 79

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY------ 115
             +  G D+S+ +L+             K    +  +L+++ +A   +L           
Sbjct: 80  LKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL 138

Query: 116 --IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKIS 169
              W+HNG  I         +  +      +   L+I   +  D G+Y   +        
Sbjct: 139 KVNWSHNGSAI-------RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ 191

Query: 170 TKTTVIVEGPPGLPGGVQVVE 190
               +  +         Q ++
Sbjct: 192 KTVDLSGQAYDEAYAEFQRLK 212

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  107 bits (268), Expect = 9e-26
 Identities = 39/204 (19%), Positives = 60/204 (29%), Gaps = 37/204 (18%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
             G              K  W  +G+ I    R K    G    L I+  + +D G Y  
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 181

Query: 61  TATNVHGMDESKGRLIVL--------------------HGPSYYEQLPPKITIAAHRNLQ 100
              +     +    L                       +       LP  +TI   + L 
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAG 155
           L C+   +   +V   W  N   +           + N+           I   S AD+G
Sbjct: 242 LTCNVWGDPPPEV--SWLKNEKAL-------ASDDHCNLKFEAGRTAYFTINGVSTADSG 292

Query: 156 EYECVVKSTVGKISTKTTVIVEGP 179
           +Y  VVK+  G  ++  TV V  P
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 88  PPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI 146
                +    N+ L+C     ++   +  +W  +   I   + ++ +          L I
Sbjct: 13  YLSWEVTGECNVLLKCKVANIKKETHI--VWYKDEREISVDEKHDFKD-----GICTLLI 65

Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           T  S  DAG YE ++K   GK  ++  ++ E   
Sbjct: 66  TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK 99

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  110 bits (276), Expect = 1e-27
 Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 38/205 (18%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  V + C     P  ++ W K    I +G          L+ + V   D+G Y C   
Sbjct: 32  AGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHVKDAGFYVCRVN 85

Query: 64  NVHGMDESK-GRLIVLHGPSYYEQL--------------PPKITIAAHRNLQLRCSAHTE 108
           N    + S+  +L V   P  +++               P    +     L L+C A   
Sbjct: 86  NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGS 145

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
            +    Y W  N + + +                L  +        G Y C V +     
Sbjct: 146 PIPH--YQWFKNELPLTHET------------KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191

Query: 169 -STKTTVIVEGPPGL--PGGVQVVE 190
            S K  +I++    L  P   +   
Sbjct: 192 DSKKVEIIIDELNNLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  + + C    +P P + W K+   +    ++        ++  V  +  G Y C   
Sbjct: 132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGTYWCHVY 185

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 97
           N     +SK   I++   +     P        +
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGH-PDNKEQTTDQ 218

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  115 bits (288), Expect = 2e-27
 Identities = 34/285 (11%), Positives = 74/285 (25%), Gaps = 36/285 (12%)

Query: 4   EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSG---------GRRKIFENGNLLISPVSRD 53
            G  + I C            W+ +   +  G           R +       +S V+R+
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
           D+G Y+C+++           + ++               I  +              + 
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357

Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
               WT +                   +G  +          GEY    ++   + +   
Sbjct: 358 C--TWTFSRKSFPC-------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF 408

Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP---ITHYKIIARTNWNSTWFNVS 229
           T+ +   P        V    +++        ++G P    T  K   ++   +      
Sbjct: 409 TLNIRRKP-------QVLAEASASQASCF---SDGYPLPSWTWKKCSDKSPNCTEEITEG 458

Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
                     +     +S  N+      +  K  A N LG    +
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCET 503

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  106 bits (266), Expect = 2e-24
 Identities = 20/187 (10%), Positives = 43/187 (22%), Gaps = 20/187 (10%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             +          +A P+ +  W           ++ +    ++      +   G Y   
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE-QKGLDNGYSISKFCNHKHQPGEYIFH 396

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
           A N          L +        +  P++   A    Q  C +    L      W    
Sbjct: 397 AENDDAQFTKMFTLNI--------RRKPQVLAEA-SASQASCFSDGYPLPSW--TWKKCS 445

Query: 122 VRIGNMDLNELETPNINI--------DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
            +  N      E                    +  +        +C   +++G       
Sbjct: 446 DKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETIL 505

Query: 174 VIVEGPP 180
           +   GP 
Sbjct: 506 LNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 94.4 bits (234), Expect = 2e-20
 Identities = 20/236 (8%), Positives = 59/236 (25%), Gaps = 29/236 (12%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCT 61
              ++T+    +A      +W    + +       +   G   ++I  ++   +G Y   
Sbjct: 62  VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLF 121

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
             +          + + +       L             L C + +     V   W    
Sbjct: 122 IQSEATNYTILFTVSIRNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCD 177

Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 180
            +              +      E          +  C  ++ +G+  T+  T+ +   P
Sbjct: 178 SQG-------ESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230

Query: 181 GLPGGVQVVEVHKT------------SATIQWTDGATNGRPITHYKIIARTNWNST 224
                   ++V +                + W       + +        + +++ 
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWE---LENKALEEGNYFEMSTYSTN 283

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 72.4 bits (177), Expect = 2e-13
 Identities = 18/156 (11%), Positives = 42/156 (26%), Gaps = 11/156 (7%)

Query: 44  NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 103
           N   +  S   S  Y   + +   +      L      + YE     + +    ++ L+ 
Sbjct: 16  NHKNNDSSVGKSSSYPMVSESPEDLGC---ALRPQSSGTVYE--AAAVEVDVSASITLQV 70

Query: 104 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
                  +    +W      +      +L+   +      + I   +   AGEY   ++S
Sbjct: 71  LVDAPGNISC--LWVFKHSSLNCQPHFDLQNRGV----VSMVILKMTETQAGEYLLFIQS 124

Query: 164 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 199
                +   TV +                +    + 
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV 160

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.2 bits (140), Expect = 5e-09
 Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 14/107 (13%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFEN-------GNLLISP 49
           E       C  +  P P + WKK           I  G   +            +  ++ 
Sbjct: 421 EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480

Query: 50  VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 96
                  +  C A N  G       L       + +    K     H
Sbjct: 481 SEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHHHHH 527

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  114 bits (285), Expect = 3e-27
 Identities = 20/187 (10%), Positives = 51/187 (27%), Gaps = 21/187 (11%)

Query: 4   EGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKI---------FENGNLLISPVSRD 53
            G  + I C            W+ +   +  G   ++                +S V+R+
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
           D+G Y+C+++           + ++    +             +  +   S   +    +
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
              WT +                   +G  +          GEY    ++   + +   T
Sbjct: 357 RCTWTFSRKSFPC-------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409

Query: 174 VIVEGPP 180
           + +    
Sbjct: 410 LNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 94.0 bits (233), Expect = 1e-20
 Identities = 16/179 (8%), Positives = 46/179 (25%), Gaps = 13/179 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCT 61
              ++T+    +A      +W    + +       +      +++I  ++   +G Y   
Sbjct: 62  VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLF 121

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
             +          + + +       L             L C + +     V   W    
Sbjct: 122 IQSEATNYTILFTVSIRNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCD 177

Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            +      +  E     +      +         +  C  ++ +G+  T+   I     
Sbjct: 178 SQG----ESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQT 229

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 77.0 bits (189), Expect = 4e-15
 Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 26/227 (11%)

Query: 44  NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 103
           N   +  S   S  Y   + +   +      L      + YE     + +    ++ L+ 
Sbjct: 16  NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYE--AAAVEVDVSASITLQV 70

Query: 104 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
                  +    +W      +      +L+    N     + I   +   AGEY   ++S
Sbjct: 71  LVDAPGNISC--LWVFKHSSLNCQPHFDLQ----NRGVVSMVILKMTETQAGEYLLFIQS 124

Query: 164 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 223
                +   TV +                +    +      +   P              
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI---SESVPEPIV---------- 171

Query: 224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270
            W          + +          E VL      + +  A NELG 
Sbjct: 172 EWVLCDSQGESCKEESP--AVVKKEEKVLHELFGTDIRCCARNELGR 216

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 74.3 bits (182), Expect = 3e-14
 Identities = 9/85 (10%), Positives = 22/85 (25%), Gaps = 1/85 (1%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             +          +A P+ +  W           ++ +    ++      +   G Y   
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQ 86
           A N          L +  G  ++  
Sbjct: 397 AENDDAQFTKMFTLNIRSGTKHHHH 421

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  112 bits (282), Expect = 5e-27
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 16/182 (8%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDS 55
            A  G    I+C   + P     + K+G  +      +I          LL      +D 
Sbjct: 223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282

Query: 56  GIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
           G+Y+C   N  G  +    +L V+  P Y ++    I +   +++ + C           
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP--APN 340

Query: 115 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
            +W+HN   +              +    L I      D G Y C   +  G    +T V
Sbjct: 341 VVWSHNAKPLSG--------GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392

Query: 175 IV 176
            V
Sbjct: 393 QV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =   99 bits (249), Expect = 8e-23
 Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 9/195 (4%)

Query: 2   AGEGGNVTIFCNPEAAPKP-KFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIY 58
             E     + C  E   +  K+ WKKDG              + G+L+       D G Y
Sbjct: 18  FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 77

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
            C A    G+  S+                 + T    R  QL C             W 
Sbjct: 78  QCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL-PNAYPKPLITWK 136

Query: 119 HNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA---GEYECVVKSTVG-KISTKTT 173
                             I     G L  T  +  D     +Y C  K+    +      
Sbjct: 137 KRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196

Query: 174 VIVEGPPGLPGGVQV 188
             ++G      G + 
Sbjct: 197 YEIKGVTKDNSGYKG 211

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score =  107 bits (269), Expect = 6e-27
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 12/191 (6%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGI 57
              +   V I C   +          +         G R  +++     I       +G+
Sbjct: 20  TENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGM 78

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVA 114
             C A       +S   ++V+ G   Y+        I ++    L L C+A TE  + + 
Sbjct: 79  VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 138

Query: 115 YIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
           + W +   +  +      DL       +      L I   + +D G Y C   S +    
Sbjct: 139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 198

Query: 170 TKTTVIVEGPP 180
             T V V   P
Sbjct: 199 NSTFVRVHEDP 209

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score =  103 bits (260), Expect = 8e-27
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P   PQ +   G  ++   + W+P         GR+I + + +   ++ +E    
Sbjct: 3   SGSSGPSGFPQNLHVTGLTTSTTELAWDPPV--LAERNGRIISYTVVFRDINSQQELQN- 59

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
               TT     + GL+PDT Y +KV A+ + G GP S     RT
Sbjct: 60  ---ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
            +    P   P  +H+ G+  +T  + W     +     II Y V   +++      N T
Sbjct: 2   SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNIT 61

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
                      +  L P   Y ++V A+++ G G +S   I  +
Sbjct: 62  -----TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPS-IQSR 99

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           + +  P   P  +   G       ++W+P    ++N   I Y + +R  N      + L+
Sbjct: 3   SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQELQ 58

Query: 342 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
                    +    P     T Y++KV+A    G GP S  +  
Sbjct: 59  NITTDTRFTLTGLKP----DTTYDIKVRAWTSKGSGPLSPSIQS 98

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
            GP G P  + V  +  ++  + W        NGR I  Y ++ R   +           
Sbjct: 6   SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTVVFRDINSQQELQNI---- 60

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                  T     ++   L P +TY+ KV A    G G  S  
Sbjct: 61  -------TTDTRFTLTG-LKPDTTYDIKVRAWTSKGSGPLSPS 95

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  106 bits (267), Expect = 1e-26
 Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 35/196 (17%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPVSRDDSG 56
                N T+ C     PKP   W + G  II  G + +I E       L+I+ V+ DD+ 
Sbjct: 16  VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75

Query: 57  IYSCTATNVHGMDESKGRLIVL-----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
           +Y   ATN  G       L V      H P   E     +       + ++         
Sbjct: 76  VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEVVSIKIPF------ 128

Query: 112 DVAY-----IWTHNGVRIGNMDLNELETPNINI--DGG---LLEITNASFADAGEYECVV 161
                     W      I           +  +        L+        DAG Y    
Sbjct: 129 -SGKPDPVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 162 KSTVGKISTKTTVIVE 177
           K+  G       + V 
Sbjct: 181 KNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.4 bits (235), Expect = 2e-22
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSG 56
           +A  G  V+I       P P   W+K  ++I + G  ++    +    +  + V R D+G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174

Query: 57  IYSCTATNVHGMDESKGRLIV 77
            Y   A N  G+D+    L V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 22/123 (17%), Positives = 34/123 (27%), Gaps = 25/123 (20%)

Query: 115 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
             W   G  I    L              L I + +  DA  Y+    +  G +S   ++
Sbjct: 36  VKWYRQGKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94

Query: 175 IVEGPPGLPG-----GVQVVEVHKTS-------------ATIQWTDGATNGRPIT---HY 213
            VE P  +       G+  V   +                 I W         I    HY
Sbjct: 95  EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ---KGQDLIDNNGHY 151

Query: 214 KII 216
           ++I
Sbjct: 152 QVI 154

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  109 bits (273), Expect = 1e-26
 Identities = 33/191 (17%), Positives = 53/191 (27%), Gaps = 16/191 (8%)

Query: 1   YAGEGGNVTIFCNPEA-APKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 58
              E  +  + C       +      +  G  +               I       S  Y
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDY 159

Query: 59  SCTATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEEL 110
            C+A      +     RL V          PP +T+             Q+ CSA + ++
Sbjct: 160 QCSALMGGRKVMSISIRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASSVDV 215

Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
            +      HN  ++     ++            L +    F  AG Y CV  +  GK ST
Sbjct: 216 -NFDVFLQHNNTKLAIPQQSDFHNNRYQKVL-TLNLDQVDFQHAGNYSCVASNVQGKHST 273

Query: 171 KTTVIVEGPPG 181
                V    G
Sbjct: 274 SMFFRVVESAG 284

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 83.5 bits (206), Expect = 7e-18
 Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 13/181 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  VT+ C    + +    W  DG             +  L  +  +  ++G Y CT  
Sbjct: 18  PGATVTLRCVGNGSVE----W--DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
                  +   L V      +  L  ++ +   ++  L C   T+ +L+          R
Sbjct: 72  GDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL-TDPVLEAGVSLVRVRGR 130

Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGL 182
                 N   +P          I  A F  + +Y+C         +S    + V+     
Sbjct: 131 PLMRHTNYSFSPW-----HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPG 185

Query: 183 P 183
           P
Sbjct: 186 P 186

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  106 bits (265), Expect = 2e-26
 Identities = 38/190 (20%), Positives = 63/190 (33%), Gaps = 24/190 (12%)

Query: 4   EGGNVTIFCNPEA-APKPKFVWKKDGNII------------GSGGRRKIFENGNLLISPV 50
            G   T+ C  +     P+  W +DG I+            G   +        L I+ +
Sbjct: 16  RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75

Query: 51  SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 110
              D+G Y C     H    S+   + L G  Y+ + P   T+AA+    L C A     
Sbjct: 76  QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA-QGPP 134

Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
             V  +W  + V         L T   +     L +   +      + C   +  G  ++
Sbjct: 135 EPVDLLWLQDAV--------PLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTS 184

Query: 171 KTTVIVEGPP 180
           +T  I   P 
Sbjct: 185 RTATITVLPQ 194

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  106 bits (266), Expect = 2e-26
 Identities = 41/202 (20%), Positives = 64/202 (31%), Gaps = 30/202 (14%)

Query: 2   AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGI 57
             EG  + ++          K  W  +G+ I    R K    G    L I+  + +D G 
Sbjct: 16  TAEG--IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 73

Query: 58  YSCTATNVHGMDESKGRLIVL--------------------HGPSYYEQLPPKITIAAHR 97
           Y     +     +    L                       +       LP  +TI   +
Sbjct: 74  YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133

Query: 98  NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
            L L C+   +   +V   W  N   +   D   L+            I   S AD+G+Y
Sbjct: 134 ALNLTCNVWGDPPPEV--SWLKNEKALAQTDHCNLK--FEAGRTAYFTINGVSTADSGKY 189

Query: 158 ECVVKSTVGKISTKTTVIVEGP 179
             VVK+  G  ++  TV V  P
Sbjct: 190 GLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 91  ITIAAHRNLQLRCSAHTEELL--------DVAYIWTHNGVRIGNMDLNELETPNINIDGG 142
               +  +L+++ +A   +L         D+   W+HNG  I   D  +       + G 
Sbjct: 3   SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVTGE 57

Query: 143 L--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
              L+I   +  D G+Y   +            +  +         Q ++
Sbjct: 58  QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  109 bits (274), Expect = 2e-26
 Identities = 26/183 (14%), Positives = 53/183 (28%), Gaps = 13/183 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCT 61
            G +V + C  E     +  W   +     +  +     +  L ++ V+   +    +C 
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
           A N  G  E   ++ V      +       T     +  +  S   +    +   W  NG
Sbjct: 232 AENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLR--WLFNG 284

Query: 122 VRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
             +               N  +  G L +   +  + G Y  +  +  G+ S        
Sbjct: 285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344

Query: 178 GPP 180
             P
Sbjct: 345 DNP 347

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  106 bits (265), Expect = 3e-26
 Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV-SRDDS 55
              GG  + +C     P P  VW+K+G  + G+  R  + E       L I PV +  D 
Sbjct: 18  VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77

Query: 56  GIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP-----PK-ITIAAHRNLQLRCSAHTE 108
             Y C A N  G   S    L +  G       P     P    I     + + C A   
Sbjct: 78  APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 137

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
              ++   W  N  ++      ++  P  ++  G L+I N+   D G+YECV ++++G  
Sbjct: 138 PTPNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTE 189

Query: 169 -STKTTVIVEGPP 180
            S  T + V+   
Sbjct: 190 HSKATNLYVKVRR 202

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  V + C     P P   W K+   +     R   ++G L I     +D G Y C A 
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAE 183

Query: 64  NVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAH 96
           N  G + SK   L V        ++    T   H
Sbjct: 184 NSMGTEHSKATNLYV--------KVRRVGTKHHH 209

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  112 bits (280), Expect = 3e-26
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 26/196 (13%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDD 54
           EG   T+ C  +         WK++ +      +   + +G+        L IS    +D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284

Query: 55  SGIYSCTATNVHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
           SG++ C A N  G       L V+     + +  +   + +    N+ L           
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYE------ 338

Query: 113 VAY------IWTHNGVRIGNM--DLNELETPNINIDGGLLEITNASFADAGEYECVVKST 164
            A+       W +      +   D  + E  +       L +T     + G Y  +V ++
Sbjct: 339 -AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNS 397

Query: 165 VGKISTKTTVIVEGPP 180
               +    V V   P
Sbjct: 398 DVNAAIAFNVYVNTKP 413

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  103 bits (259), Expect = 1e-23
 Identities = 34/199 (17%), Positives = 56/199 (28%), Gaps = 29/199 (14%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSG--------GRRKIFENGNLLISPVS 51
           +  +G NV +    EA PKP+   W                      I     L ++ + 
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEEL 110
             + G Y+   +N          + V           P+I T     N  L+C A     
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYV--------NTKPEILTYDRLVNGMLQCVAAGFPE 435

Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGL---------LEITNASFADAGEYECVV 161
             +   W            + L      ++              I +++F   G  EC  
Sbjct: 436 PTID--WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKA 493

Query: 162 KSTVGKISTKTTVIVEGPP 180
            + VGK S       +G  
Sbjct: 494 YNDVGKTSAYFNFAFKGNN 512

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 99.4 bits (247), Expect = 3e-22
 Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 11/189 (5%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSGGRRKIFENGNLLISPVSR-DDSGI 57
           Y  E  +  + C     P+      K   G  +    R        ++I  V R      
Sbjct: 125 YGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183

Query: 58  YSCTATNVHGMDESKG-RLIVL---HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
             C+         S+   L V                  +       + C+   +    V
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSV 242

Query: 114 AYIWTHNGVRI--GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
              W     +        +             L I++A   D+G + C   +T G  +  
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302

Query: 172 TTVIVEGPP 180
           TT+ V    
Sbjct: 303 TTLEVVDKG 311

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 64.7 bits (157), Expect = 4e-11
 Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 26/152 (17%)

Query: 53  DDSGIYSCT----ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 108
             +  + C          G  +          PS +      + +     ++L C+    
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPG-KSDLIVRVGDEIRLLCTDPGF 63

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
                   WT   +   N +                    A   + G+Y C  K  +   
Sbjct: 64  ------VKWTFEILDETNEN-----------KQNEWITEKAEATNTGKYTCTNKHGLS-- 104

Query: 169 STKTTVIVEGPPGLPGGVQVVEV-HKTSATIQ 199
                V V  P  L    + +         ++
Sbjct: 105 -NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR 135

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.9 bits (155), Expect = 7e-11
 Identities = 14/110 (12%), Positives = 23/110 (20%), Gaps = 23/110 (20%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------------LLIS 48
              N  + C     P+P   W              +  +                   I 
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 98
             +   +G   C A N  G   +              +   K  I  H +
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAF--------KGNNKEQIHPHHH 521

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 21/181 (11%), Positives = 45/181 (24%), Gaps = 20/181 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  + + C      K    W  +     +  +         +       ++G Y+CT  
Sbjct: 50  VGDEIRLLCTDPGFVK----WTFEILDETNENK-----QNEWITEKAEATNTGKYTCTNK 100

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
           +      S    + +  P+    +   +      +  +RC     E   V          
Sbjct: 101 H----GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE---VTNYSLKGCQG 153

Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGL 182
                L +      +   G++  +           C V       +S K  + V      
Sbjct: 154 K---PLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA 210

Query: 183 P 183
            
Sbjct: 211 V 211

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  105 bits (264), Expect = 3e-26
 Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 33/200 (16%)

Query: 4   EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGI 57
           E G V  +   E      K  +  +   I  G + K+  + N     + +  +  +D G 
Sbjct: 16  EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYEQL-----------------PPKITIAAHRNLQ 100
           Y+    +    + S   L+        ++                       +    N+ 
Sbjct: 76  YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYE 158
           L+C        +   +W  +   I             +   G+  L IT  S  DAG YE
Sbjct: 136 LKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFSKKDAGIYE 187

Query: 159 CVVKSTVGKISTKTTVIVEG 178
            ++K   GK  ++  ++ E 
Sbjct: 188 VILKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 5/71 (7%)

Query: 115 YIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKT 172
             +  N   I      ++       + G+  + +      D G Y   ++       +  
Sbjct: 35  VNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91

Query: 173 TVIVEGPPGLP 183
            ++ +    L 
Sbjct: 92  VLVGDVFKKLQ 102

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  112 bits (282), Expect = 3e-26
 Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 29/236 (12%)

Query: 2   AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
             +   V I C    +           +   +  G R          I       +G+  
Sbjct: 140 ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVF 199

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           C A       +S   ++V+ G   Y+ +      I ++    L L C+A TE  + + + 
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259

Query: 117 WTHNGV-----RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
           W +        ++ N DL       +      L I   + +D G Y C   S +      
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319

Query: 172 TTVIVEGPPGLP-----GGVQVVEVHKT-----------SATIQWTDGATNGRPIT 211
           T V V   P +        +    V +               I+W     NG P+ 
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWY---KNGIPLE 372

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  112 bits (281), Expect = 5e-26
 Identities = 30/206 (14%), Positives = 55/206 (26%), Gaps = 33/206 (16%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------------GRRKIFENGN- 44
           E  +V+++C  + +      W K G                            +F N   
Sbjct: 563 EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN 622

Query: 45  ----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPSYYEQLPPKITIAAHR 97
               + +   S  D G Y C A +            +                 T +   
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE 682

Query: 98  NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 157
           ++++ C+A       +  +W  +   +      E     +      L I      D G Y
Sbjct: 683 SIEVSCTASGNPPPQI--MWFKDNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEGLY 735

Query: 158 ECVVKSTVGKISTKTTVIVEGPPGLP 183
            C   S +G    +   I+EG     
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  105 bits (264), Expect = 5e-24
 Identities = 37/212 (17%), Positives = 62/212 (29%), Gaps = 35/212 (16%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
           A  G  V I       P P+  W K+G  + S     I     L I  VS  D+G Y+  
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLES--NHTIKAGHVLTIMEVSERDTGNYTVI 399

Query: 62  ATNVHGMDESKG--RLIVLHGPSYYEQ--LPPKITIAAHRNLQLRCSAH----------- 106
            TN    ++      L+V   P   E+  + P  +        L C+ +           
Sbjct: 400 LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459

Query: 107 ---------------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG---LLEITN 148
                          +         W       G   +   +     I+G    +  +  
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519

Query: 149 ASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            +   +  Y+C   + VG+     +  V   P
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGP 551

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  105 bits (262), Expect = 1e-23
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 29/195 (14%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGN-------------IIGSGGRRKIFENGNLLISPV 50
            G  + + C           +  +               +    G         L I  V
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297

Query: 51  SRDDSGIYSCTATNVHGMDESKGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTE 108
           +R D G+Y+C A++     ++   + V   P   +   +   +       +++       
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY 357

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGK 167
              ++   W  NG+ +           N  I  G +L I   S  D G Y  ++ + + K
Sbjct: 358 PPPEI--KWYKNGIPL---------ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISK 406

Query: 168 ISTKTT--VIVEGPP 180
                   ++V  PP
Sbjct: 407 EKQSHVVSLVVYVPP 421

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 93.3 bits (231), Expect = 6e-20
 Identities = 24/189 (12%), Positives = 47/189 (24%), Gaps = 18/189 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
               + I C         ++W  + +            +G     L I  V  +D+G Y 
Sbjct: 45  ANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYK 102

Query: 60  CTATNVHGMDESKGRLIVLHGPSY----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
           C              +     P       +     IT   ++ + + C      L     
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162

Query: 116 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
                   +        +   I+ D      I +   + AG   C  K       +   +
Sbjct: 163 ARYPEKRFV-------PDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215

Query: 175 IVEGPPGLP 183
           +V     + 
Sbjct: 216 VVVVGYRIY 224

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 81.7 bits (201), Expect = 3e-16
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSC 60
              G ++ + C     P P+ +W KD   +       +   N NL I  V ++D G+Y+C
Sbjct: 678 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 737

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLP 88
            A +V G  + +   I+  G      L 
Sbjct: 738 QACSVLGCAKVEAFFII-EGAQEKTNLE 764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.6 bits (185), Expect = 2e-14
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 10/130 (7%)

Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
              ++ C  T    +       + L  P    Q    +TI A+  LQ+ C    +     
Sbjct: 8   AVALWLCVETRAASVGLPS---VSLDLPRLSIQ-KDILTIKANTTLQITCRGQRD----- 58

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
              W     + G+    E+   +  +    L I      D G Y+C  + T         
Sbjct: 59  -LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117

Query: 174 VIVEGPPGLP 183
           V     P + 
Sbjct: 118 VQDYRSPFIA 127

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score =  102 bits (255), Expect = 6e-26
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
            T ++ +    PG P  + +  +   S T+Q+  G      I+ + + A+          
Sbjct: 7   GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEG--- 63

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
            E ++  ++      +   + + L P++ Y F++   N +G   PS PS +  T    P
Sbjct: 64  EEWLLIHQLSNEPDARSMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP 121

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534
           G    S         + P  PP+ + I  I P +V + +    P ++ +  I  + V   
Sbjct: 1   GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQF---RPGYDGKTSISRWLVEAQ 56

Query: 535 EVDQDMSRANDTIIPV---GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
                       I  +    +    ++ DL+P   Y  R+   +  G    S P+   Q 
Sbjct: 57  VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116

Query: 592 GEEK 595
            +  
Sbjct: 117 LQSG 120

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 3/127 (2%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  ++     ++P   P  +        ++ + + P    + +I   L+  ++  
Sbjct: 1   GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGV 59

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
             E           +        +  L P T Y  ++   N  G  P S+    R  +  
Sbjct: 60  VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ--PSRKIQTL 117

Query: 493 PQKPPSA 499
              P S 
Sbjct: 118 QSGPSSG 124

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  106 bits (266), Expect = 1e-25
 Identities = 35/190 (18%), Positives = 51/190 (26%), Gaps = 16/190 (8%)

Query: 1   YAGEGGNVTIFCNPEAA-PKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIY 58
              EG    + C       K      ++G   +              +I      DS  Y
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY 159

Query: 59  SCTATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEEL 110
            C           +   L V          PP+I +   +         Q+ CSA   E+
Sbjct: 160 VCKTMVNGRESTSTGIWLKVNRVHPE----PPQIKLEPSKLVRIRGEAAQIVCSATNAEV 215

Query: 111 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 170
                +    G     + LN     N       L +    F DAG Y CV  + VG  + 
Sbjct: 216 GFN--VILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTA 273

Query: 171 KTTVIVEGPP 180
                V    
Sbjct: 274 TMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 91.2 bits (226), Expect = 2e-20
 Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 13/181 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  VT+ C    + +    W    +   +           L     +  ++G Y CT  
Sbjct: 18  PGETVTLRCVSNGSVE----WDGPISPYWTLDPES--PGSTLTTRNATFKNTGTYRCTEL 71

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
                  +   L V      +  L  ++T+   +   L C   T+  L  +      G R
Sbjct: 72  EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGR 130

Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPGL 182
                     +P          I  A   D+  Y C    +     ST   + V      
Sbjct: 131 QVLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPE 185

Query: 183 P 183
           P
Sbjct: 186 P 186

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  103 bits (258), Expect = 1e-25
 Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 19/184 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFV-WKKDGN--IIGSGGRRKI----FENGNLLISPVSRDDSG 56
            G +    C      K K + W       +  +  R  +     ++  L I   + DD+G
Sbjct: 16  VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75

Query: 57  IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           IY C  T   G        + +     ++  P         +  + C   +     +  I
Sbjct: 76  IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI--I 133

Query: 117 WTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
           W H G  +       +   ++         L+I      D G Y C  +           
Sbjct: 134 WKHKGRDV-------ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186

Query: 174 VIVE 177
           + V 
Sbjct: 187 IQVI 190

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  109 bits (273), Expect = 2e-25
 Identities = 50/307 (16%), Positives = 83/307 (27%), Gaps = 31/307 (10%)

Query: 91  ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNELETPNINIDGGLLEI 146
           +        ++ C+   E L+ +       G                    +    L   
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299

Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-T 205
            +   +  G   C  +    +       +    P                 ++WT    +
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDS 359

Query: 206 NGRPITHYKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 263
            GR    Y +     W  +         V   E      R   ++ + L P   Y F V 
Sbjct: 360 GGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD-LEPHMNYTFTVE 418

Query: 264 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 323
           A N +     S                P ++   G     LS+SW   P   Q +    Y
Sbjct: 419 ARNGVSGLVTSRSFRT--ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP--QQSRVWKY 474

Query: 324 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 376
           ++ +RKK D+   +            V R              T Y V+VQA+   G G 
Sbjct: 475 EVTYRKKGDSNSYN------------VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522

Query: 377 ESEVVTI 383
            S+V   
Sbjct: 523 GSKVHEF 529

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  107 bits (269), Expect = 6e-25
 Identities = 41/270 (15%), Positives = 73/270 (27%), Gaps = 18/270 (6%)

Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
             +           K   +    +          E     +        P+         
Sbjct: 273 KVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMP--- 329

Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPI------ELIRENIRGRLIGHRIKYWKEDNPEE 440
              P  AP  + +       + + W P       E I  ++                   
Sbjct: 330 CTRPPSAPHYLTAV-GMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388

Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAV 500
                    TR    +  L+P   Y   V A N       S  +   +     Q  P  V
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS-VSINQTEPPKV 447

Query: 501 HIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 560
            ++G + T++ V+W    P  ++  +  Y+V   +        N   +         + D
Sbjct: 448 RLEGRSTTSLSVSWS--IPPPQQSRVWKYEVTYRKKGDS----NSYNVRRTEGFSVTLDD 501

Query: 561 LSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           L+P   Y ++V A +  G G   S    FQ
Sbjct: 502 LAPDTTYLVQVQALTQEGQGA-GSKVHEFQ 530

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  102 bits (256), Expect = 3e-23
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 16/192 (8%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           + + W P P++     +I Y +   +      +    +           +          
Sbjct: 349 VELRWTP-PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDL 407

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL 416
             +  Y   V+A N V     S      S        P  V   G ++T+++V+W+    
Sbjct: 408 EPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT-EPPKVRLEGRSTTSLSVSWSIPP- 465

Query: 417 IRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
             +    R+  + + Y K+ +     V    RT      +  L PDT Y V+V A    G
Sbjct: 466 -PQQ--SRVWKYEVTYRKKGDSNSYNVR---RTEGFSVTLDDLAPDTTYLVQVQALTQEG 519

Query: 477 EGPESERYLERT 488
           +G  S+ +  +T
Sbjct: 520 QGAGSKVHEFQT 531

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 67.1 bits (163), Expect = 7e-12
 Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 55/313 (17%)

Query: 12  CNPEAAPKPKFVWKKDGNIIGSGGRRK------------------------IFENGNLLI 47
             P    +P+     DG  +   G+                                   
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299

Query: 48  SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--- 104
                   G  SC               +    P       P    A     ++      
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP----SAPHYLTAVGMGAKVELRWTP 355

Query: 105 -AHTEELLDVAYI--WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD---AGEYE 158
              +    D+ Y           G     E          GL   T+ + +D      Y 
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTR-TSVTVSDLEPHMNYT 414

Query: 159 CVVKST--VGKISTKTTVIV---EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 213
             V++   V  + T  +            P  V++     TS ++ W+        +  Y
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKY 474

Query: 214 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 273
           ++  R   +S  +NV            T     ++++ L P +TY  +V A  + G G  
Sbjct: 475 EVTYRKKGDSNSYNVRR----------TEGFSVTLDD-LAPDTTYLVQVQALTQEGQGAG 523

Query: 274 SSPSPQYNTPADK 286
           S    ++ T + +
Sbjct: 524 SKVH-EFQTLSPE 535

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 22/168 (13%), Positives = 39/168 (23%), Gaps = 15/168 (8%)

Query: 432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP-ESERYLERTYR 490
           Y K ++  +       +   + +  +     T    +        EG   + +       
Sbjct: 271 YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPC 330

Query: 491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE--PIIGYKVRVWEVDQDMSRANDTII 548
             P   P  +         V + W    P  +      I Y V   +   +         
Sbjct: 331 TRPPSAPHYLTAV-GMGAKVELRWT---PPQDSGGREDIVYSVTCEQCWPESGECGPCEA 386

Query: 549 PV--------GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
            V               + DL P   Y   V A +       S    T
Sbjct: 387 SVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRT 434

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  102 bits (257), Expect = 3e-25
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 29/216 (13%)

Query: 175 IVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
                P  P  +  VE + ++A +Q+ +  AT G PI  YK   R      W +      
Sbjct: 4   AQADTPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY--- 59

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 293
             +    +     +I   L P +TY  ++ A N  G GE S+ S ++ T   +   AP  
Sbjct: 60  --DAKEASMEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKL 115

Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 353
            G  G     + ++          +P  +Y + +R  +                   +  
Sbjct: 116 EGQMGEDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIR-----------LPS 162

Query: 354 PSEFY-------YTEYEVKVQAINDVGPGPESEVVT 382
            S+           EYEV V A N  G    +  V 
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 99.5 bits (248), Expect = 5e-24
 Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
             AD P  +PS             + ++  P      P + YK  WR   +  + S+   
Sbjct: 4   AQADTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 60

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRG 401
                   +V I      T Y V++ A+N  G G  S      +       AP+     G
Sbjct: 61  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG 120

Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
            +  +I V     +     IR     + ++Y    +  +  +   S +     ++  L  
Sbjct: 121 EDGNSIKVNLIKQDDGGSPIR----HYLVRYRALSSEWKPEIRLPSGSDH--VMLKSLDW 174

Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
           + +Y V V+A N  G+   +  ++ RT            H
Sbjct: 175 NAEYEVYVVAENQQGKSKAAH-FVFRT----AAAHHHHHH 209

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 12/188 (6%)

Query: 404 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRT--TRNWALIVGLQ 460
           S+   V ++      E   G  I  ++ ++         + +Y ++         IVGL+
Sbjct: 21  SSTAQVQFDE----PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 76

Query: 461 PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS 520
           P+T Y V++ A N  G G  S     +T        P      G +  ++ V        
Sbjct: 77  PETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLI--KQD 134

Query: 521 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
               PI  Y VR   +  +             +    +  L     Y + V+A +  G  
Sbjct: 135 DGGSPIRHYLVRYRALSSEWKPEIRL---PSGSDHVMLKSLDWNAEYEVYVVAENQQGKS 191

Query: 581 RMSSPAIT 588
           + +     
Sbjct: 192 KAAHFVFR 199

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 165 VGKISTKTTVIVEG--PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN 222
           +G+IS  +    +    P  P     +     S  +        G PI HY +  R   +
Sbjct: 93  LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRAL-S 151

Query: 223 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 282
           S W            D         +++ L   + YE  V+A N+ G  + +    +  T
Sbjct: 152 SEWKPEIRLPS--GSDHVM------LKS-LDWNAEYEVYVVAENQQGKSKAAHFVFR--T 200

Query: 283 PA 284
            A
Sbjct: 201 AA 202

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 6/127 (4%)

Query: 492 APQKPPSAVHIKGINPT--TVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTI 547
           A    PS+  I  + P   T  V +    P      PI+ YK     V +++        
Sbjct: 4   AQADTPSSPSIDQVEPYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61

Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSA 607
                     IV L P   Y +R+ A +  G G +S+ +        +            
Sbjct: 62  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGE 121

Query: 608 STTLLLV 614
               + V
Sbjct: 122 DGNSIKV 128

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score =  102 bits (256), Expect = 3e-25
 Identities = 38/213 (17%), Positives = 64/213 (30%), Gaps = 35/213 (16%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIFE 41
              E  NV +  +        F W K                           GR  I+ 
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 42  NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQ 100
           NG+LL   ++  D G+Y+   T+ +        R  V    +         T+    ++ 
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
           L C ++          W  N        L   E   ++ +  +L I      DAGEY+C 
Sbjct: 130 LTCLSNDIG---ANIQWLFNSQS-----LQLTERMTLSQNNSILRIDPIKREDAGEYQCE 181

Query: 161 VKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVH 192
           + + V  + S    + +   P           H
Sbjct: 182 ISNPVSVRRSNSIKLDIIFDP------HHHHHH 208

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  105 bits (263), Expect = 6e-25
 Identities = 48/297 (16%), Positives = 87/297 (29%), Gaps = 34/297 (11%)

Query: 4   EGGNVTIFCNP-------EAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRD 53
           EG  V + C           +P+    W K+ +     G    R   ++G L + P  ++
Sbjct: 32  EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91

Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
           DSG Y CT  N    D+    L V      +   +     +    +  L C   +E   D
Sbjct: 92  DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRD 151

Query: 113 V---AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 169
                  W  + + +   +   L           L + + +  DAG Y CV+        
Sbjct: 152 KTDVKIQWYKDSLLLDKDNEKFLSVRG----TTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207

Query: 170 TKTTVIVE---------GPPGLPGGVQVVEVHK-TSATIQWTDGATNGRP---ITHYKI- 215
              T  +E           P +   ++ +     +  TI        G P   +  +   
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267

Query: 216 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 270
                + +              E +          + V       +FK +  N L +
Sbjct: 268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF 324

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  100 bits (249), Expect = 3e-23
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 27/198 (13%)

Query: 4   EGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSG 56
              +  + C             K  W KD  ++     + +      +LL+  V+ +D+G
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAG 193

Query: 57  IYSCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKI-------TIAAHRNLQLRCSAHTE 108
            Y C  T  H   +      + L      E+  P I       + +    L + C     
Sbjct: 194 YYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLG 253

Query: 109 ELLDVAYI--WTHNGVRIGNMD----LNELETPNINIDGGL-----LEITNASFADAG-E 156
               +  +  WT N   I +      + E      + +        L     +  D   +
Sbjct: 254 TGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMD 313

Query: 157 YECVVKSTVGKISTKTTV 174
           ++CVV +T+   + +TTV
Sbjct: 314 FKCVVHNTLSFQTLRTTV 331

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score =  101 bits (252), Expect = 1e-24
 Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 20/213 (9%)

Query: 368 AINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIG 427
             +       S +V   S  ++P   P  +       ++I + W P+          +IG
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLN------SSTIIG 53

Query: 428 HRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER 487
           +RI              ++  +   +  + GL+P   Y + V    N GE   +      
Sbjct: 54  YRITVVAAGEGIPIFEDFVDSSV-GYYTVTGLEPGIDYDISVYTVKNGGESTPT----TL 108

Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
           T + A   PP+ +    I P T+ VTW           +  + VR   V  +   A  +I
Sbjct: 109 TQQTAV-PPPTDLRFTNIGPDTMRVTWAPPPSI----DLTNFLVRYSPVKNEEDVAELSI 163

Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 580
               +     + +L PG  Y + V +     + 
Sbjct: 164 --SPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 84.1 bits (208), Expect = 8e-19
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 35/222 (15%)

Query: 265 GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP 319
           G+   +   SS      +  + P   P+ +        D++     + W PL     ++ 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMEVP--QPTDL-----SFVDITDSSIGLRWTPLN----SST 50

Query: 320 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 377
            I Y+I      +     E   +  +VG   V    P      +Y++ V  + + G    
Sbjct: 51  IIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP----GIDYDISVYTVKNGGESTP 105

Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
           + +        +P   P  +         + VTW P           L    ++Y    N
Sbjct: 106 TTLTQ---QTAVP--PPTDLRFTNIGPDTMRVTWAPPP------SIDLTNFLVRYSPVKN 154

Query: 438 PEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
            E+ A   +S  + N  ++  L P T+Y V V +     E  
Sbjct: 155 EEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 28/214 (13%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S             P  +  V++  +S  ++WT    N   I  Y+I        T    
Sbjct: 12  SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWT--PLNSSTIIGYRI--------TVVAA 61

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
            E +   E    +     ++   L P   Y+  V      G   P++ + Q  T      
Sbjct: 62  GEGIPIFEDFVDSSVGYYTVTG-LEPGIDYDISVYTVKNGGESTPTTLTQQ--TAVP--- 115

Query: 289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 348
             P+ +         + ++W P P    +     + + +    + E  +E      +   
Sbjct: 116 -PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNA 169

Query: 349 AVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 380
            V+   +P     TEY V V ++ +         
Sbjct: 170 VVLTNLLP----GTEYVVSVSSVYEQHESTPLRG 199

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 64.5 bits (157), Expect = 4e-12
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 470 MAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGY 529
           M  ++      S      ++ + P   P+ +    I  +++ + W  ++ S     IIGY
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLNSS----TIIGY 54

Query: 530 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           ++ V    + +    D +    +     +  L PG  Y + V    NGG+   ++    
Sbjct: 55  RITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQ 111

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
           +Y+  V +   G  ST TT+  +     P  ++   +   +  + W         +T++ 
Sbjct: 89  DYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFL 146

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           +      N     V+E  I    +         + N L+P + Y   V +  E     P 
Sbjct: 147 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 197

Query: 275 S 275
            
Sbjct: 198 R 198

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 96.7 bits (241), Expect = 4e-24
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFN 227
            ++       PP  P    +    +TS  + W      G PI  +++  +       W  
Sbjct: 7   GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWIL 66

Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
            +  +               I   L    +Y+F+V A N LG  EPS+PS  Y      P
Sbjct: 67  ATSAIPPSR-------LSVEITG-LEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534
           G    S    +   R +P + P    I   + T+V+VTW    P      PI  ++V   
Sbjct: 1   GSSGSSGSQPDHG-RLSPPEAPDRPTISTASETSVYVTW---IPRGNGGFPIQSFRVEYK 56

Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
           ++ +       T     + L  +I  L  G  Y  RV A +  G+   S+P+  + +   
Sbjct: 57  KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 8/128 (6%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S           P+ AP        + T++ VTW P    R N    +   R++Y
Sbjct: 1   GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIP----RGNGGFPIQSFRVEY 55

Query: 433 WKEDNPEE-TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
            K     +          +R    I GL+    Y  +V A N  GE   S     R Y  
Sbjct: 56  KKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA--PSRPYVV 113

Query: 492 APQKPPSA 499
           +   P S 
Sbjct: 114 SGSGPSSG 121

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 99.2 bits (247), Expect = 4e-24
 Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 11/180 (6%)

Query: 2   AGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
                 VT+ CN  ++        W K+G  + +   RK   N    I+    +DSG Y 
Sbjct: 15  RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT--RKNASNMEYRINKPRAEDSGEYH 72

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C    V    ++   + V                   ++  + C +      +   +W  
Sbjct: 73  CVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW--MWRK 128

Query: 120 NGVRIGNMDLNELETPNINIDGGL--LEITNASFA-DAGEYECVVKSTVGKISTKTTVIV 176
               +     N      I        L I N     D GEYEC   +++G  S  T + V
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 96.3 bits (240), Expect = 5e-24
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNST 224
           G       + +   PG P  V++ +V   +  + WT    +G   IT Y I      +  
Sbjct: 4   GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63

Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
           WF V EH           R  A+I   LV  + Y F+V + N  G  E ++ + +    A
Sbjct: 64  WFTVIEHY---------HRTSATITE-LVIGNEYYFRVFSENMCGLSEDATMTKESAVIA 113

Query: 285 --DKPY 288
              K Y
Sbjct: 114 RDGKIY 119

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
           PP  V I+ +    V +TW    P  +    I GY ++  +          T+I   +  
Sbjct: 20  PPQIVKIEDVWGENVALTWT--PPKDDGNAAITGYTIQKADKKSMEWF---TVIEHYHRT 74

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
            A I +L  G  Y+ RV + +  G    ++ 
Sbjct: 75  SATITELVIGNEYYFRVFSENMCGLSEDATM 105

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
           D P   PQ V         + +TW P +   ++    + G+ I+   + + E   V    
Sbjct: 16  DRPG-PPQIVKIEDVWGENVALTWTPPK---DDGNAAITGYTIQKADKKSMEWFTVIEHY 71

Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             T   A I  L    +YY +V + N  G   ++ 
Sbjct: 72  HRTS--ATITELVIGNEYYFRVFSENMCGLSEDAT 104

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 32/115 (27%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
               P  P  + V E   TS T+ W  G  N  P+T+Y I  R       F   + V   
Sbjct: 4   GSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
                      SI   L P+S Y F+V+A N +G G PS            P   
Sbjct: 62  R---------YSIGG-LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           +  KPP  + +     T+V +TW   +      P+  Y ++      +        +   
Sbjct: 6   SGPKPPIDLVVTETTATSVTLTWDSGNSE----PVTYYGIQYRAAGTEGPFQEVDGVA-- 59

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
            T    I  LSP   Y  RVLA ++ G G  S  
Sbjct: 60  -TTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEA 92

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P+  P  +      +T++ +TW+            +  + I+Y            
Sbjct: 3   SGSSGPK-PPIDLVVTETTATSVTLTWDS------GNSEPVTYYGIQYRAAGTEGPFQEV 55

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
               TTR    I GL P ++Y  +V+A N+ G GP SE       R   Q  PS+
Sbjct: 56  DGVATTR--YSIGGLSPFSEYAFRVLAVNSIGRGPPSE---AVRARTGEQSGPSS 105

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 22/92 (23%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           ++++W+       + P  YY I +R         E           V  + +  Y     
Sbjct: 24  VTLTWDS----GNSEPVTYYGIQYRAAGTEGPFQE-----------VDGVATTRYSIGGL 68

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
             ++EY  +V A+N +G GP SE V   + E 
Sbjct: 69  SPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 99.2 bits (247), Expect = 2e-23
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 18/180 (10%)

Query: 4   EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           EG  + + C+          ++ ++G             N NL I   +   +G Y C+ 
Sbjct: 96  EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSG 150

Query: 63  TNVHGMDESKGRLIVLHGPSY-YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
              H    +   + V                +     + L C            +    G
Sbjct: 151 MGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET--------KLLLQRPG 202

Query: 122 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI---STKTTVIVEG 178
           +++        +T          +I  A   D+G Y C   +  G +   S +  + V G
Sbjct: 203 LQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 33/181 (18%), Positives = 52/181 (28%), Gaps = 24/181 (13%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           +   VT+ C     P      W  +G    +          +  I+  S +DSG Y C  
Sbjct: 15  QEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYRITSASVNDSGEYRCQR 67

Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
                 D    +L +  G    +             L LRC A  ++L+    ++  NG 
Sbjct: 68  GLSGRSDPI--QLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAWKDKLV-YNVLYYRNGK 122

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
                                L I   + +  G Y C         S   +V V+     
Sbjct: 123 AFKFFH-----------WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPA 171

Query: 183 P 183
           P
Sbjct: 172 P 172

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 22/98 (22%), Positives = 37/98 (37%)

Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
           +    P   P       +N TT+ + W Y+  S    PI G+ +     D D        
Sbjct: 3   SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62

Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
           +  G+     I  L P   Y +++  F+ GG+   S+ 
Sbjct: 63  MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 93.7 bits (233), Expect = 4e-23
 Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P   P   F+   N T I + W  I     N    + G  I Y   D+  ++   
Sbjct: 3   SGSSGPVAGPYITFTDAVNETTIMLKWMYIP--ASNNNTPIHGFYIYYRPTDSDNDSDYK 60

Query: 445 YLS-RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
                  R W  I  LQP+T Y +K+  +N  GE   S   +  T  KA   P S 
Sbjct: 61  KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET--KARSGPSSG 114

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           + +  P   P            + + W  +P    N P   + I++R   D++  S+  K
Sbjct: 3   SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRP-TDSDNDSDYKK 61

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
           +          I      T Y++K+Q  N+ G    S V+  
Sbjct: 62  DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
            GP   P       V++T+  ++W        N  PI  + I  R   +    +  + ++
Sbjct: 6   SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNT-PIHGFYIYYRPTDSDNDSDYKKDMV 64

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
             +   ++      I + L P ++Y+ K+   NE G  E S+      T A   
Sbjct: 65  EGDRYWHS------ISH-LQPETSYDIKMQCFNEGGESEFSNVM-ICETKARSG 110

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 98.6 bits (245), Expect = 6e-23
 Identities = 28/185 (15%), Positives = 45/185 (24%), Gaps = 19/185 (10%)

Query: 1   YAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN------LLISPVSRD 53
                      C      P  +  W  D   + +  +   F +G        ++ P S+ 
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV 187

Query: 54  DSGIYSCTATN--VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 111
           D    +C   +            L V + P                   L C A +    
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN-PE 246

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
              Y W+     +          P     G  L I            C V + +G    +
Sbjct: 247 PTGYNWSTTMGPL---------PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAE 297

Query: 172 TTVIV 176
            TV V
Sbjct: 298 LTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 74.0 bits (181), Expect = 1e-14
 Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 39/206 (18%)

Query: 4   EGGNVTIFCNPEAAPKP-----KFVWKKDGNIIG---------------------SGGRR 37
            G +VT+ C  +          +  W + G                         +    
Sbjct: 14  LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73

Query: 38  KIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 96
               N +L +  +  +D G Y+C   T   G       L VL  P    +   K+ +   
Sbjct: 74  AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGE 132

Query: 97  RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 151
                RC +                W  +   + N                L  +  +S 
Sbjct: 133 PVPMARCVSTG------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186

Query: 152 ADAGEYECVVKSTVGKISTKTTVIVE 177
            D     C V+    +     TV + 
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLT 212

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 92.4 bits (230), Expect = 7e-23
 Identities = 21/96 (21%), Positives = 38/96 (39%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
            P   P   + + ++ T + + W Y+  S    PI G+ +     D D        +  G
Sbjct: 3   TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
           +     I  L P   Y +++  F+ GG+   S+  I
Sbjct: 63  SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 86.3 bits (214), Expect = 1e-20
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS-R 448
           P   P   ++   + T I + W  I     N    + G  I Y   D+  ++        
Sbjct: 4   PITGPHIAYTEAVSDTQIMLKWTYIPS--SNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61

Query: 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
            ++ W +I  LQP+T Y +K+  +N  GE   S   +  T
Sbjct: 62  GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           + + W  +P    N P   + I++R   D++  S+  ++          I      T Y+
Sbjct: 21  IMLKWTYIPSSNNNTPIQGFYIYYRP-TDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYD 79

Query: 364 VKVQAINDVGPGPESEVVTI 383
           +K+Q  N+ G    S V+  
Sbjct: 80  IKMQCFNEGGESEFSNVMIC 99

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           P   P       V  T   ++WT       N  PI  + I  R   +    +    V+  
Sbjct: 4   PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNT-PIQGFYIYYRPTDSDNDSDYKRDVVE- 61

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                  ++   I + L P ++Y+ K+   NE G  E S+ 
Sbjct: 62  -----GSKQWHMIGH-LQPETSYDIKMQCFNEGGESEFSNV 96

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 93.2 bits (232), Expect = 7e-23
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 11/126 (8%)

Query: 164 TVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 221
           + G       + V   P  P      +  V + +  + WT       P+  Y +    N 
Sbjct: 2   SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSEN- 60

Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 281
           N+ W  +   V  K           +++  LVP  +Y+F++ A N++G G+ S  + + +
Sbjct: 61  NAPWTVLLASVDPKAT-------SVTVKG-LVPARSYQFRLCAVNDVGKGQFSKDTERVS 112

Query: 282 TPADKP 287
            P   P
Sbjct: 113 LPESGP 118

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPV 550
           AP+ P     +  +    +++TW   +  F+   P+I Y + + E +   +    ++   
Sbjct: 20  APEHPV--ATLSTVERRAINLTW---TKPFDGNSPLIRYILEMSENNAPWTVLLASV--D 72

Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
                  +  L P + Y  R+ A ++ G G+ S       + E 
Sbjct: 73  PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 393 APQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
           AP+   +        AIN+TW        +    LI + ++  + + P    +  +    
Sbjct: 20  APEHPVATLSTVERRAINLTWTK----PFDGNSPLIRYILEMSENNAPWTVLLASVD-PK 74

Query: 451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
                + GL P   Y  ++ A N+ G+G  S+   +      P+  PS+
Sbjct: 75  ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK---DTERVSLPESGPSS 120

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEY 362
           ++++W   P +  N+P I Y +   + N          +     + V   +P       Y
Sbjct: 36  INLTWTK-PFDG-NSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVP----ARSY 89

Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
           + ++ A+NDVG G  S+     S   +P+  P
Sbjct: 90  QFRLCAVNDVGKGQFSKDTERVS---LPESGP 118

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 9/127 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S    + + ED+P      +       T++ V+W           G L G+RI +
Sbjct: 1   GSSGSSGPQLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQE----PGEKNGILTGYRISW 55

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            + +       +YL   T  +  + GL   T Y ++V A  + G+G  S           
Sbjct: 56  EEYNRTNTRVTHYLPNVTLEY-RVTGLTALTTYTIEVAAMTSKGQGQVSA---STISSGV 111

Query: 493 PQKPPSA 499
           P   PS+
Sbjct: 112 PPSGPSS 118

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 72.9 bits (179), Expect = 9e-16
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S   L RT+   P  P   +    I  T++ V+W+   P  +   + GY++   E
Sbjct: 1   GSSGSSGPQLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEE 57

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
            ++  +R    +     TL+  +  L+    Y + V A ++ G G++S+  I+  
Sbjct: 58  YNRTNTRVTHYLPN--VTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           E  PG  G +   E+  TS  + W + G  NG  +T Y+I        +W   +      
Sbjct: 15  EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRI--------SWEEYNRTNTRV 65

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                    E  +   L   +TY  +V A    G G+ S+ +     P   P
Sbjct: 66  THYLPNVTLEYRVTG-LTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGP 116

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S P     T  D P      +         L +SW+  P  ++N     Y+I W 
Sbjct: 1   GSSGSSGPQLVR-THEDVP-GPVGHLSFSEILDTSLKVSWQE-P-GEKNGILTGYRISWE 56

Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388
           + N T      +  Y        R+      T Y ++V A+   G G  S       +  
Sbjct: 57  EYNRTN---TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI---SSG 110

Query: 389 MPQVAPQ 395
           +P   P 
Sbjct: 111 VPPSGPS 117

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 98.7 bits (245), Expect = 1e-22
 Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 25/191 (13%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDSGI 57
           +   +   C      P     W+                  +       + P        
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD----- 112
            +C         +    L V + P    +           +++L C A      D     
Sbjct: 209 LACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA------DANPPA 262

Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
             Y WT             L       +  L      +++ AG Y C   + +G  S + 
Sbjct: 263 TEYHWTTLN--------GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314

Query: 173 TVIVEGPPGLP 183
            V +     L 
Sbjct: 315 EVNITEAAALE 325

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 76.3 bits (187), Expect = 3e-15
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 32/210 (15%)

Query: 1   YAGEGGNVTIFC---NPEAAPKPKFV-WKKDGN----------------IIGSGGRRKIF 40
           Y   G +V + C   NP  + K   V W+K  N                ++     R  F
Sbjct: 25  YGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEF 84

Query: 41  -----ENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIA 94
                 +G + +S +  +D G+Y C   T   G  ES+  L V+  P+ + +    +  A
Sbjct: 85  LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRA 144

Query: 95  AH----RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS 150
                 + L   C++           W                   + +      +  + 
Sbjct: 145 KKGQDDKVLVATCTSA-NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV-ISRYRLVPSR 202

Query: 151 FADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            A      C+V   + +     T+ V+  P
Sbjct: 203 EAHQQSLACIVNYHMDRFKESLTLNVQYEP 232

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 18/123 (14%)

Query: 79  HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPN 136
             PS   Q+   +      ++ L CS              W  +             +  
Sbjct: 12  RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71

Query: 137 INIDG---------------GLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPP 180
           +++                 G + ++     D G Y C   +   G   ++  + V   P
Sbjct: 72  VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131

Query: 181 GLP 183
              
Sbjct: 132 TNW 134

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 98.7 bits (245), Expect = 2e-22
 Identities = 28/214 (13%), Positives = 63/214 (29%), Gaps = 23/214 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           +G ++T+         P    +           + I     L +S +   DSG ++CT  
Sbjct: 110 QGQSLTLTLESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVL 162

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPK---------------ITIAAHRNLQLRCSAHTE 108
                 E K  ++VL        +  K                 +     L  +    + 
Sbjct: 163 QNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASS 222

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVVKSTVGK 167
               + +   +  V +  +  +        +   L L      +A +G     +++  GK
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282

Query: 168 ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 201
           +  +  ++V     L   +       TS  +  +
Sbjct: 283 LHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS 316

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 93.3 bits (231), Expect = 1e-20
 Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 44/210 (20%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 41
              +G  V + C        +F WK    I   G +                        
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 42  -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 100
            N  L+I  +  +DS  Y C   +     + + +L+V    +          +   ++L 
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTA-----NSDTHLLQGQSLT 115

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
           L   +       V                           G  L ++     D+G + C 
Sbjct: 116 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 160

Query: 161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
           V     K+  K  ++V         V   E
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKE 190

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 63.7 bits (154), Expect = 6e-11
 Identities = 17/183 (9%), Positives = 42/183 (22%), Gaps = 38/183 (20%)

Query: 3   GEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFE-------NGNLLISPVSRD 53
              G +       ++ K    F  K     +    +    +       +  L  +     
Sbjct: 208 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA 267

Query: 54  DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 113
            SG  +       G    +  L+V+                      L C         +
Sbjct: 268 GSGNLTLALEAKTGKLHQEVNLVVMRATQ--------------LQKNLTCEVWGPTSPKL 313

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 173
                                          +       +AG ++C++  + G++  ++ 
Sbjct: 314 MLSLKLENKEAKV--------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESN 358

Query: 174 VIV 176
           + V
Sbjct: 359 IKV 361

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFN 227
           S+     +   PG P   QV +V K S T+ W  G     P + Y I     + +++W  
Sbjct: 5   SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64

Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           V+ HV   +   YT      +   L P + Y F V A N  G  +PS  S    T    P
Sbjct: 65  VANHV---KTTLYT------VRG-LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS-RANDTIIPVGNTL 554
           PPS   +  +   +V ++W+    +    P   Y +  +      S +     +    T 
Sbjct: 18  PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK---TT 72

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
              +  L P   Y   V A +  G    S  +   +  +  
Sbjct: 73  LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 10/126 (7%)

Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
           G        +   D+P   P           ++ ++W P              + I+ + 
Sbjct: 1   GSSGSSGKNYDLSDLPG-PPSKPQVTDVTKNSVTLSWQP----GTPGTLPASAYIIEAFS 55

Query: 435 EDNPEE-TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 493
           +        V    +TT     + GL+P+T Y   V A N  G    S   +    R   
Sbjct: 56  QSVSNSWQTVANHVKTTL--YTVRGLRPNTIYLFMVRAINPQGLSDPSP--MSDPVRTQD 111

Query: 494 QKPPSA 499
             P S 
Sbjct: 112 SGPSSG 117

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 33/133 (24%)

Query: 271 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 325
           G   S    Y   +D P   PS+      ++ D++     +SW+P        P   Y I
Sbjct: 1   GSSGSSGKNY-DLSDLP-GPPSKP-----QVTDVTKNSVTLSWQPGTPG--TLPASAYII 51

Query: 326 -FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPE 377
             + +     +Q+               + +  Y        T Y   V+AIN  G    
Sbjct: 52  EAFSQSVSNSWQT-----------VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100

Query: 378 SEVVTIFSAEDMP 390
           S +      +D  
Sbjct: 101 SPMSDPVRTQDSG 113

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 91.1 bits (226), Expect = 3e-22
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  V + + +  P   P  V       T + + W  ++         + G+++ Y
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNV-VWNATDTKVLLNWEQVK--AMENESEVTGYKVFY 57

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                     +      T   +  + L     Y ++V A  + G+G  SE
Sbjct: 58  RTSSQNNVQVL-----NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE 102

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 87.6 bits (217), Expect = 5e-21
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S      T +  P +PP  V       T V + W  V     E  + GYKV    
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
             Q+  +  +T      + +   + L   + Y + V A ++GGDG  S      ++  
Sbjct: 60  SSQNNVQVLNTN---KTSAE---LVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITS 111

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 64.5 bits (157), Expect = 8e-13
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S       T    P Q P  +         + ++WE +   +  +    YK+F+R
Sbjct: 1   GSSGSSGTVNVT-TKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYR 58

Query: 329 KKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAE 387
             +    Q   T K    + +            +Y ++V+A  D G G  SE + I    
Sbjct: 59  TSSQNNVQVLNTNKTSAELVLP--------IKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110

Query: 388 D 388
            
Sbjct: 111 S 111

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 17/114 (14%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
           + PP  P G  V     T   + W            +T YK+  RT+  +    ++ +  
Sbjct: 15  KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENES-EVTGYKVFYRTSSQNNVQVLNTN-- 71

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                      + S E VL     Y  +V A  + G G  S         +  P
Sbjct: 72  -----------KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 96.3 bits (239), Expect = 4e-22
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCT 61
           E  +  + C        ++   + DG  + +           + I  V R        C 
Sbjct: 105 EDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCA 164

Query: 62  ATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCSAHTEELLDV 113
           A        S    L V           P +++              + C+   +    V
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKA----IPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSV 219

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFADAGEYECVVKSTVGKIS 169
             +W     +  ++   +  + +           L I++A   D+G + C   +T G  +
Sbjct: 220 NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN 279

Query: 170 TKTTVIV 176
             TT+ V
Sbjct: 280 VTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 21/181 (11%), Positives = 41/181 (22%), Gaps = 19/181 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G  +++ C           W                +    +        +G Y+C+ +
Sbjct: 26  AGDTLSLTCIDP----DFVRWTFKTYF----NEMVENKKNEWIQEKAEATRTGTYTCSNS 77

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 123
           N      S   + V   P+    +   +      +  +RC     ++             
Sbjct: 78  NGLT---SSIYVFVRD-PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQY--SLI----E 127

Query: 124 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGL 182
                L    T   N   G+               C  +       S K T+ V      
Sbjct: 128 CDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA 187

Query: 183 P 183
            
Sbjct: 188 I 188

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSR 52
           +G   T+ C  +        +W K         + K                L IS    
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV 261

Query: 53  DDSGIYSCTATNVHGMDESKGRLIVL 78
           DDSG++ C A N  G       L V+
Sbjct: 262 DDSGVFMCYANNTFGSANVTTTLKVV 287

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  + + +   +P   P    +   + T+I ++W P           +  + + Y
Sbjct: 1   GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR------SDTIANYELVY 53

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
              ++ EE  +     T+     + GL+P++ YY ++ A +  G G  +     RT    
Sbjct: 54  KDGEHGEEQRITIEPGTS---YRLQGLKPNSLYYFRLAARSPQGLGASTAEISART---M 107

Query: 493 PQKPPSA 499
               PS+
Sbjct: 108 QSSGPSS 114

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S      T    P   P     +  + T++ ++W    P    + I  Y++   +
Sbjct: 1   GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWT--PP--RSDTIANYELVYKD 55

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
            +       +  I +       +  L P   Y+ R+ A S  G G  ++  I+ +  + 
Sbjct: 56  GEHG----EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE-ISARTMQS 109

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 169 STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 227
           S    VI   G PG P   +     +TS  + WT    +   I +Y+++ +   +     
Sbjct: 6   SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-SD-TIANYELVYKDGEHGEEQR 63

Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           ++       ++  T      ++  L P S Y F++ A +  G G  ++        +  P
Sbjct: 64  IT-------IEPGT---SYRLQG-LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 25/129 (19%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S    Q  T    P   P            + +SW P P   ++     Y++ ++
Sbjct: 1   GSSGSSGDI-QVITQTGVP-GQPLNFKAEPESETSILLSWTP-P---RSDTIANYELVYK 54

Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVV 381
                E Q  T++            P   Y        + Y  ++ A +  G G  +  +
Sbjct: 55  DGEHGEEQRITIE------------PGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102

Query: 382 TIFSAEDMP 390
           +  + +   
Sbjct: 103 SARTMQSSG 111

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 97.2 bits (241), Expect = 6e-22
 Identities = 41/334 (12%), Positives = 94/334 (28%), Gaps = 25/334 (7%)

Query: 299 GKIGDLSISWEPLPR-EKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
           G +G L + W+P    +      + Y++ +R      +++   K         +      
Sbjct: 44  GYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLN-KGIE 102

Query: 358 YYTEYEVKVQAINDVG-PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL 416
                 +  Q  N        +E     S + +P+   Q +    +N   +  +W P   
Sbjct: 103 AXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKP--- 159

Query: 417 IRENIRGRLIGHRIKYWKE--DNPEETAVYYLSRTTRNWALI--VGLQPDTKYYVKVMAY 472
                      + + YW E  D+  +   Y  +           +       +Y+ V   
Sbjct: 160 --GIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGS 217

Query: 473 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 532
           +       S    +         PP  +     +   + + W              Y++ 
Sbjct: 218 SENKPIRSSYFTFQ-LQNIVKPLPPVYLTFTRESSCEIKLKWSI-PLGPIPARCFDYEIE 275

Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN---GGDGRMS--SPAI 587
           + E D  +  A              +   +  ++    V +  N     DG  S  S   
Sbjct: 276 IREDDTTLVTATV------ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQ 329

Query: 588 TFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYI 621
            ++  +  +       L      +L++  + L +
Sbjct: 330 CWEGEDLSKKTLLRFWLPFGFILILVIFVTGLLL 363

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 19/191 (9%), Positives = 44/191 (23%), Gaps = 17/191 (8%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P      +  V  +       W  G       T+Y +              +++      
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLD-TNYNLFYWYEGLDHALQCVDYI-----K 189

Query: 239 RYTGRKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
                       +    +  +   V   +E       S    +          P  +   
Sbjct: 190 ADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVYLTFT 247

Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
                ++ + W   P     A    Y+I  R+ + T   +    E          + +  
Sbjct: 248 RESSCEIKLKWSI-PLGPIPARCFDYEIEIREDDTTLVTATVENE-------TYTLKTTN 299

Query: 358 YYTEYEVKVQA 368
              +    V++
Sbjct: 300 ETRQLCFVVRS 310

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 366 VQAINDVGPG-PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
             +   +G G P    +   + +D+P   P G+      +T++ + W P         G 
Sbjct: 3   SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPA----APNGI 57

Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
           ++ ++I +        TA   +   +       GL+P++ Y  ++ A    G G  +E  
Sbjct: 58  ILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117

Query: 485 LERTYRKAPQKPPSA 499
           +  T +++   P S 
Sbjct: 118 VVTTEKRSG--PSSG 130

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 469 VMAYNNAGEG-PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPII 527
             +    G+G P     LERT    P  PP  +    +  T+V + W+   P+     I+
Sbjct: 3   SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIIL 59

Query: 528 GYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
            Y++         + A   ++   +        L P   Y  R+ A +  G G  +  
Sbjct: 60  AYQITHRLNTTTANTATVEVLA-PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA 116

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           +  PG P G+   EV  TS  + W   A     I  Y+I  R N  +T    +  V+   
Sbjct: 25  DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLN-TTTANTATVEVLAPS 83

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
             +YT          L P S Y F++ A    G+GE +            P
Sbjct: 84  ARQYT------ATG-LKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 20/138 (14%)

Query: 264 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNA 318
           +   +G G PS P     T  D P   P  I        ++      + W+P P    N 
Sbjct: 5   SSGRIGDGSPSHPPILERTLDDVP-GPPMGI-----LFPEVRTTSVRLIWQP-P-AAPNG 56

Query: 319 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGP 376
             + Y+I  R    T   +       +          P     + Y  ++ A    G G 
Sbjct: 57  IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP----ESVYLFRITAQTRKGWGE 112

Query: 377 ESEVVTIF-SAEDMPQVA 393
            +E + +       P   
Sbjct: 113 AAEALVVTTEKRSGPSSG 130

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 95.2 bits (236), Expect = 1e-21
 Identities = 45/305 (14%), Positives = 74/305 (24%), Gaps = 51/305 (16%)

Query: 1   YAGEGGNVTIF-CNPEAAP-KPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDS 55
                  + +  C       K    W KD +   +      R       L   P   +DS
Sbjct: 15  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPS---YYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
           G Y C   N       K     +       Y  Q   K  +    +  L C        +
Sbjct: 75  GHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE 134

Query: 113 ---VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
              +  + W  +   +       L+  + +     L + N +    G Y C    T    
Sbjct: 135 NNELPKLQWYKDCKPL------LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188

Query: 169 STKTTVIVEG----------PPGLPGGVQVVEVHKTSA-------------TIQWTDGAT 205
               T ++E           P  +    + +EV   S                 W     
Sbjct: 189 QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW--- 245

Query: 206 NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 265
           NG  I         +      +           R T     +I  +   +  + F   A 
Sbjct: 246 NGSVI-------DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK 298

Query: 266 NELGY 270
           N  G 
Sbjct: 299 NTHGI 303

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 93.2 bits (231), Expect = 6e-21
 Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 27/198 (13%)

Query: 4   EGGNVTIFCN------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 57
             G+  + C        E    PK  W KD   +             L++  V+    G 
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN 176

Query: 58  YSCTATNVHGMDE-SKGRLIVLHGPSYYEQLPPKITIAAHR--------NLQLRCSAHTE 108
           Y+C A+  +   +    R+I        +   P I   A+          +QL C+   +
Sbjct: 177 YTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQ 236

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELE---------TPNINIDGGLLEITNASFAD-AGEYE 158
                   W  NG  I   D    E             +    +L I+          + 
Sbjct: 237 LSDIA--YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT 294

Query: 159 CVVKSTVGKISTKTTVIV 176
           C  K+T G  +    +I 
Sbjct: 295 CFAKNTHGIDAAYIQLIY 312

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 89.1 bits (221), Expect = 2e-21
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P + P GV +   +   I +TW    L +         + +++            
Sbjct: 3   SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
             +  T    L+ GL+P+T Y   VM          S      T+  +   P S 
Sbjct: 63  --ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG--PSSG 113

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRY--VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
            P  PP  V    ++  T+ +TW    +    +      Y VR        ++       
Sbjct: 7   GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK---YKNA 63

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
              TL   +  L P   Y   V+          S  A
Sbjct: 64  NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 16/116 (13%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLS-----ISWE--PLPREKQNAPNIYYKIFWRKKNDTE 334
           + +  P   P  +     +   LS     I+W    LP+ ++   + YY + W+      
Sbjct: 3   SGSSGPMMPPVGV-----QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN 57

Query: 335 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
            + +      N       +      T YE  V           S      + E   
Sbjct: 58  TKYKNA----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG 109

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 15/115 (13%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHV 232
            GP   P GVQ   +   +  I W D +           +Y +  +TN  +     + + 
Sbjct: 6   SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN- 64

Query: 233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                          +   L P + YEF V+          S  +    T     
Sbjct: 65  --------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELSG 109

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 96.8 bits (240), Expect = 2e-21
 Identities = 67/462 (14%), Positives = 129/462 (27%), Gaps = 56/462 (12%)

Query: 155 GEYECVVKST--VGKISTKTTVIVEGPPGLPGGVQVVEVH----KTSATIQWTDG--ATN 206
           G+YE  + S    G  ++K T+  +    +P   +++++      ++  ++W D      
Sbjct: 55  GDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFP 114

Query: 207 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL-VPWSTYEFKV-IA 264
            R    ++I      +     V        ++        S  + + +  + +  ++   
Sbjct: 115 HRSNVIWEIKVLRKESMEL--VKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCY 172

Query: 265 GNELGYGEP---SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 321
            + L +      S  SP                      I D      P  +      +I
Sbjct: 173 IDNLHFSGLEEWSDWSPVKQISW----------------IPDSQTKVFPQDKVILVGSDI 216

Query: 322 ------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG 375
                   K+       T      L    NV I +  I          V     N  G  
Sbjct: 217 TFCCVSQEKVLSALIGHTNCPLIHLDG-ENVAIKIRNISVSASSGTNVVFTTEDNIFG-- 273

Query: 376 PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE 435
                         P   PQ +     +   I  +WNP  +       R   + +     
Sbjct: 274 -------TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALV-GPRATSYTLVESFS 325

Query: 436 DNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK 495
                              L   L     Y   + A+N  G    +   L     K    
Sbjct: 326 GKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST--ILVNITEKVYPH 383

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTL 554
            P++  +K IN T V ++W    P    +     ++ + + +    + N TI  V  ++ 
Sbjct: 384 TPTSFKVKDINSTAVKLSWHL--PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSY 441

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 594
              +  L+P   Y  R+   +     + S  S        E 
Sbjct: 442 LVALDKLNPYTLYTFRIRCSTETF-WKWSKWSNKKQHLTTEA 482

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 32/283 (11%), Positives = 80/283 (28%), Gaps = 30/283 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G ++T  C  +       +   +  +I   G     +  N+ +S  S   + +   T  
Sbjct: 212 VGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASS--GTNVVFTTED 269

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 117
           N+ G               Y    P ++    H   ++ CS               +Y  
Sbjct: 270 NIFGTV---------IFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTL 320

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV- 176
                      +          +   L        +   +     + +G+  +   V + 
Sbjct: 321 VE---SFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT 377

Query: 177 -EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
            +  P  P   +V +++ T+  + W       +     +I  + + +             
Sbjct: 378 EKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT----- 432

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY--GEPSSP 276
                      +++  L P++ Y F++    E  +   + S+ 
Sbjct: 433 IQGVENSSYLVALDK-LNPYTLYTFRIRCSTETFWKWSKWSNK 474

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 88.6 bits (220), Expect = 3e-21
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 225
           G    +    +   P +P   ++    K S T+QW   + NG  I ++ +       +  
Sbjct: 4   GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63

Query: 226 FNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
           F             Y G  K+  I   L P    +F++ A N+ G    S     Y +  
Sbjct: 64  F----------CQCYMGSQKQFKITK-LSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112

Query: 285 DKP 287
             P
Sbjct: 113 SGP 115

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S   +  T    P   P+   I      ++ + W+  +PS     I  + +   E
Sbjct: 1   GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVL---E 54

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
            D+           +G+     I  LSP      R+ A ++ G    S   + +  G 
Sbjct: 55  WDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 10/127 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S      +    P   P           ++ + W        +   ++    +++
Sbjct: 1   GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKA----PSDNGSKIQNFVLEW 55

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            +     E    Y+    +    I  L P      ++ A N+ G    SE   E  Y  +
Sbjct: 56  DEGKGNGEFCQCYMGSQKQ--FKITKLSPAMGCKFRLSARNDYGTSGFSE---EVLYYTS 110

Query: 493 PQKPPSA 499
               PS+
Sbjct: 111 GCSGPSS 117

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-----LSISWEPLPREKQNAPNIYY 323
           G    S       T + +P   P+       +I +     L++ W+        +    +
Sbjct: 1   GSSGSSGAEIFT-TLSCEP-DIPNPP-----RIANRTKNSLTLQWKA--PSDNGSKIQNF 51

Query: 324 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 376
            + W +        +                 + +           + ++ A ND G   
Sbjct: 52  VLEWDEGKGNGEFCQ-----------CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100

Query: 377 ESEVVTIFSAEDMP 390
            SE V  +++    
Sbjct: 101 FSEEVLYYTSGCSG 114

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 94.7 bits (234), Expect = 7e-21
 Identities = 53/419 (12%), Positives = 113/419 (26%), Gaps = 35/419 (8%)

Query: 178 GPPGL--PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           G   L  P  V+V  +   +  ++W     +   +T +    +      W  +S      
Sbjct: 4   GSKNLKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSG----- 56

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR-- 293
                T  K       L  +   + ++ A  E            +          P    
Sbjct: 57  -CQNITSTKCNFSSLKLNVYEEIKLRIRA--EKENTSSWYEVDSFTPFRKAQIGPPEVHL 113

Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 353
                  +  +S   +       +  +  Y +   K +    +        +    +   
Sbjct: 114 EAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLS-- 171

Query: 354 PSEFYYTEYEVKVQAINDVG--PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW 411
                 T Y +KV+A        G  S V  I +  +     P+ +     N   + + W
Sbjct: 172 ----PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKW 226

Query: 412 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWA-LIVGLQPDTKYYVKVM 470
           +            L     +       +   +                +     Y ++V 
Sbjct: 227 DYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQ 286

Query: 471 AYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY----VSPSFEEEPI 526
           A +       SE     T  +A   PP   +I+ ++  + H+         +    ++  
Sbjct: 287 ASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNIRSLS-DSFHIYIGAPKQSGNTPVIQDYP 344

Query: 527 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
           + Y++  WE   +  R            D  + +L P   Y ++  A +       SS 
Sbjct: 345 LIYEIIFWENTSNAERKIIE-----KKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSV 398

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 86.6 bits (213), Expect = 2e-18
 Identities = 45/348 (12%), Positives = 95/348 (27%), Gaps = 30/348 (8%)

Query: 155 GEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 210
            E +  +++     S      +          P  V + E    +  I  + G  +    
Sbjct: 76  EEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHISPGTKDSVMW 134

Query: 211 THYKI-----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 265
               +     +     +S      E++  +                L P +TY  KV A 
Sbjct: 135 ALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK-----------LSPETTYCLKVKAA 183

Query: 266 NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 325
               +               +    P        +  +  + W+             +  
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243

Query: 326 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQAINDVGPGPESEVVTIF 384
             R   +  ++ + + +  NV       P        Y ++VQA +       SE +   
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           +      + P        +S  I +           I+   + + I +W+  +  E  + 
Sbjct: 304 TEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKII 363

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG----EGPESERYLERT 488
                 +    +  L+P T Y VK  A+            S+   E+T
Sbjct: 364 ----EKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKT 407

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 89.7 bits (222), Expect = 7e-21
 Identities = 27/200 (13%), Positives = 48/200 (24%), Gaps = 44/200 (22%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 41
              +G  V + C        +F WK    I   G +                        
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 42  -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 100
            N  L+I  +  +DS  Y C   +     +     +                +   ++L 
Sbjct: 66  GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQGQSLT 116

Query: 101 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
           L   +       V                           G  L ++     D+G + C 
Sbjct: 117 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 161

Query: 161 VKSTVGKISTKTTVIVEGPP 180
           V     K+  K  ++V    
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQ 181

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 90.1 bits (223), Expect = 1e-20
 Identities = 34/209 (16%), Positives = 60/209 (28%), Gaps = 38/209 (18%)

Query: 2   AGEGGNVTIFC----NPEAAPKPKFVWKKDGNIIGSG---------------------GR 36
             +G    + C    +PE        W    +                          GR
Sbjct: 12  KAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGR 71

Query: 37  RKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 90
                      + ++ ++ +   D G Y C      G+   K  L VL  PS   +    
Sbjct: 72  VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS-GTRCFVD 130

Query: 91  ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS 150
            +     + +L+C    E  L + + W                     +   ++ + NAS
Sbjct: 131 GSEEIGNDFKLKCEP-KEGSLPLQFEWQKLSD-----SQTMPTPWLAEMTSPVISVKNAS 184

Query: 151 FADAGEYECVVKSTVGKISTKTTVIVEGP 179
              +G Y C V++ VG       + V  P
Sbjct: 185 SEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 70.1 bits (171), Expect = 7e-14
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 4   EGGNVTIFCNPEA-APKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
            G +  + C P+  +   +F W+K  +             +  + +   S + SG YSCT
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCT 194

Query: 62  ATNVHGMDESKGRLIVLHGPS 82
             N  G D+   RL V+  PS
Sbjct: 195 VQNRVGSDQCMLRLDVVP-PS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)

Query: 131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
              + ++      + +TN   +D G Y+C VK   G  + K  + V   P          
Sbjct: 73  HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGS 132

Query: 191 VHKTSATIQWTDGATNGRPITHYK 214
               +   +       G     ++
Sbjct: 133 EEIGN-DFKLKCEPKEGSLPLQFE 155

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 88.7 bits (220), Expect = 1e-20
 Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 23/196 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+ +       T +++ W            +   +R+ Y      +             
Sbjct: 9   NPKDLEVSDPTETTLSLRWRRPV-------AKFDRYRLTYVSPSGKKNEME---IPVDST 58

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
             ++ GL   T+Y + ++A     +   +               P  +    I   +  V
Sbjct: 59  SFILRGLDAGTEYTISLVAEKGRHKSKPT----TIKGSTVVG-SPKGISFSDITENSATV 113

Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 572
           +W           +  Y+V    +          +   G+     +V L PG  Y++ ++
Sbjct: 114 SWTPPRS-----RVDSYRVSYVPITGGTPN---VVTVDGSKTRTKLVKLVPGVDYNVNII 165

Query: 573 AFSNGGDGRMSSPAIT 588
           +     +    S  + 
Sbjct: 166 SVKGFEESEPISGILK 181

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 24/179 (13%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           LS+ W         A    Y++ +   +  + + E       V      +      TEY 
Sbjct: 23  LSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEI-----PVDSTSFILRGLDAGTEYT 72

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
           + + A         + +            +P+G+        +  V+W P        R 
Sbjct: 73  ISLVAEKGRHKSKPTTIKGSTVVG-----SPKGISFSDITENSATVSWTP-------PRS 120

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
           R+  +R+ Y          V      TR    +V L P   Y V +++     E     
Sbjct: 121 RVDSYRVSYVPITGGTPNVVTVDGSKTR--TKLVKLVPGVDYNVNIISVKGFEESEPIS 177

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 24/207 (11%), Positives = 62/207 (29%), Gaps = 34/207 (16%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
               P  ++V +  +T+ +++W            Y++   +  +             E++
Sbjct: 6   DLDNPKDLEVSDPTETTLSLRWRRPVA---KFDRYRLTYVSP-SGKK---------NEME 52

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 298
                    +   L   + Y   ++A       +P++      T       +P  I    
Sbjct: 53  IPVDSTSFILRG-LDAGTEYTISLVAEKGRHKSKPTTIKGS--TVVG----SPKGISFSD 105

Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSE 356
                 ++SW P       +    Y++ +           T+   G+     +   +P  
Sbjct: 106 ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVD--GSKTRTKLVKLVP-- 156

Query: 357 FYYTEYEVKVQAINDVGPG-PESEVVT 382
               +Y V + ++       P S ++ 
Sbjct: 157 --GVDYNVNIISVKGFEESEPISGILK 181

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 156 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 214
           EY   + +      S  TT+      G P G+   ++ + SAT+ WT        +  Y+
Sbjct: 70  EYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT--PPRS-RVDSYR 126

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           +        T            V     +    +   LVP   Y   +I+       EP 
Sbjct: 127 VSYVPITGGTP---------NVVTVDGSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPI 176

Query: 275 SPS 277
           S  
Sbjct: 177 SGI 179

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           +G NVT+ CN     +     W  +G++           N +L I     +DSG Y C  
Sbjct: 18  KGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKFEDSGEYKCQH 70

Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
             V+  +     L V       +       +   + L LRC       +    I+  +G 
Sbjct: 71  QQVNESEPV--YLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGWRNWDV-YKVIYYKDGE 125

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 180
            +               +   + ITNA+  D+G Y C  K       ++   + V   P
Sbjct: 126 ALKYWY-----------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 22/93 (23%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           PP   I    N+ L C+         +  W HNG                      L I 
Sbjct: 11  PPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE-------------TNSSLNIV 56

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           NA F D+GEY+C  +      S    + V    
Sbjct: 57  NAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDW 87

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 91.8 bits (227), Expect = 2e-20
 Identities = 52/304 (17%), Positives = 84/304 (27%), Gaps = 28/304 (9%)

Query: 1   YAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
            +  G +VT+ C   E        W       GS   R       LL+  V   DSG YS
Sbjct: 17  TSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYS 76

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
           C      G       L+V   P   +        +   N+       +   L    +   
Sbjct: 77  CYRA---GRPAGTVHLLVDVPPEEPQLS--CFRKSPLSNVVCEWGPRSTPSLTTKAVLLV 131

Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE--CVVKSTVGKISTKTTVIV- 176
              +    +  +                     D+  Y     V S+VG   +KT     
Sbjct: 132 RKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQG 191

Query: 177 -----EGPPGLPGGVQVVEVHKTSATIQWTD--GATNGRPITHYKIIARTNWNSTWFNVS 229
                  PP     V  V  +    ++ W D     +      +++  R   + T+    
Sbjct: 192 CGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTF---- 246

Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP-QYNTPADKPY 288
                        +    I +       +  ++ A  E G GE S  SP    TP  +  
Sbjct: 247 -----TTWMVKDLQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESR 300

Query: 289 QAPS 292
             P+
Sbjct: 301 SPPA 304

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 71.4 bits (174), Expect = 1e-13
 Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 28/279 (10%)

Query: 325 IFWRKKND--TEFQSETLKEYGNVGIAVVRIPSEFYYT---EYEVKVQAINDVGPGPESE 379
           + W  +        S        + +  V++     Y+              V   PE  
Sbjct: 39  VHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEP 98

Query: 380 VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE 439
            ++ F                    + +   W P        +  L+  + +    ++ +
Sbjct: 99  QLSCFRKSP---------------LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQ 143

Query: 440 ETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
           E   Y       +  L V     + Y V +   ++ G    S+    +        PP+ 
Sbjct: 144 EPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSK-FSKTQTFQGCGILQPDPPAN 202

Query: 500 VHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDAD 557
           + +  +  NP  + VTW+           + +++R        S+   T +         
Sbjct: 203 ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER---SKTFTTWMVKDLQHHCV 259

Query: 558 IVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 594
           I D   G R+ +++ A    G G  S  SP        E
Sbjct: 260 IHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTE 298

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 68.7 bits (167), Expect = 8e-13
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 11/216 (5%)

Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIP-SEFYY 359
            ++   W P      +       +  + +N   E   E  +          ++   E   
Sbjct: 109 SNVVCEWGPRST--PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDS 166

Query: 360 TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG--VFSRGFNSTAINVTWNPIELI 417
           + Y V +   + VG    S+  T      +    P    V +   N   ++VTW      
Sbjct: 167 SFYIVSMCVASSVGSK-FSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSW 225

Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
             +     +   ++Y  E +   T             +I       ++ V++ A    G+
Sbjct: 226 NSS--FYRLRFELRYRAERSKTFTTWMVKDLQHH--CVIHDAWSGLRHVVQLRAQEEFGQ 281

Query: 478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 513
           G  SE   E       +        +   P     T
Sbjct: 282 GEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTT 317

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 88.2 bits (218), Expect = 2e-20
 Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 15/179 (8%)

Query: 4   EGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
            G  + + C+   +        W K G ++                   S D  G YSC 
Sbjct: 12  LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDDQWGEYSCV 67

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 121
                    +    I LHGP   + +     I       L C + +   +   + W    
Sbjct: 68  FLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKIT 122

Query: 122 VRIGNMDLNELE---TPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVIV 176
                  +N  E     + +     L I N +   D G+Y C   S+ G      T+ V
Sbjct: 123 DSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 1   YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII------GSGGRRKIFENGN---LLISPV 50
           +  EG    + C  E+ P    + W K  +        GS  R  +  +     L I  +
Sbjct: 94  HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 153

Query: 51  SR-DDSGIYSCTATNVHGMDESKGRLIV 77
           +   D G Y C  T+  G D++   L V
Sbjct: 154 NMEADPGQYRCNGTSSKGSDQAIITLRV 181

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 88.3 bits (218), Expect = 3e-20
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 10/188 (5%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
           A  G +V++ C+      P F W+   +   +G          L ++PVS  +   Y CT
Sbjct: 13  AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72

Query: 62  ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHN 120
           AT      E   ++ + +      ++     + A + + ++CS         +       
Sbjct: 73  ATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAG-EYECVVKSTVGK-------ISTKT 172
              + + +  E           L         D G    C  K  + +            
Sbjct: 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191

Query: 173 TVIVEGPP 180
            + V   P
Sbjct: 192 ELQVYISP 199

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 8/96 (8%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
             +       ++ L CS    E       W         +D               L + 
Sbjct: 8   ESRYLAQIGDSVSLTCSTTGCESPFF--SWRTQ------IDSPLNGKVTNEGTTSTLTMN 59

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
             SF +   Y C       K+     V +   P  P
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
            G   + C     P P   W K+G    G   R  I E G L I  +   D+G Y+C A
Sbjct: 22 VDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVA 81

Query: 63 TNVHGMDESKGRLIVL 78
          T+  G       L V 
Sbjct: 82 TSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 79  HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
            GP    Q P   T+A      L+C A  + L  ++  W   G             P   
Sbjct: 6   SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTF------PGRDPRAT 57

Query: 139 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
           I + G L+I N   +D G Y CV  S+ G+ S    + V  
Sbjct: 58  IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 87.2 bits (216), Expect = 4e-20
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 36/193 (18%)

Query: 1   YAGEGGNVT--IFCNPEAAPKPKFVWKKDGN------------IIGSGGRRKIFENGNLL 46
           +   G ++   I     +       W+K  +                    K+F+NG L 
Sbjct: 10  WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK 69

Query: 47  ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 105
           I  +  DD  IY  +  +  G +  +    +       E++  PKI+     N  L C  
Sbjct: 70  IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTC-INTTLTCEV 124

Query: 106 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
                 D       +G              ++ +   ++     + + + +++C   + V
Sbjct: 125 --MNGTDPELNLYQDGK-------------HLKLSQRVI-THKWTTSLSAKFKCTAGNKV 168

Query: 166 GKISTKTTVIVEG 178
            K S+   V    
Sbjct: 169 SKESSVEPVSCPE 181

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 85.1 bits (211), Expect = 5e-20
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN----LLISPVSRDDSGIY 58
           EG +V + C   A P PK  WK++  ++  +  R  ++++      LLI  V++ D+G Y
Sbjct: 29  EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 93
           + +A N  G+     RL V           P  T+
Sbjct: 89  TVSAVNEAGVTTCNTRLDV--------TARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
            W  N   +   + + +     N     L I + +  DAG Y     +  G  +  T + 
Sbjct: 48  FWKRNNEMV-QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

Query: 176 VEGPP 180
           V   P
Sbjct: 107 VTARP 111

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 89.8 bits (222), Expect = 5e-20
 Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 13/180 (7%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           +  E   +TI C     P+      +    +            +         +   Y C
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPY------DHQRGFSGIFEDRSYIC 158

Query: 61  TATNVHGMDESKGRLIVLHGPSYY--EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
             T      +S    +     S         +  +    N+ L C     E+++    WT
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF--EWT 216

Query: 119 HNGVRIGNM--DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
           +     G +   + +           +L I +A   D+G Y C V  +V     +  + +
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 65.5 bits (159), Expect = 7e-12
 Identities = 27/235 (11%), Positives = 60/235 (25%), Gaps = 44/235 (18%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
                 + C+         VW++            +    +  L ++ ++  D+G Y CT
Sbjct: 14  VSSTFVLTCSGS----APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCT 69

Query: 62  ATNVHGMDESKGRLIVLHGPSY------YEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
             +  G++  + + + +  P         +     I +     + + C     +L     
Sbjct: 70  HNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQL---VV 126

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTV 174
                    G++ L           G           +   Y C       ++ S    V
Sbjct: 127 TLHEKK---GDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDREVDSDAYYV 174

Query: 175 IVEGPPGLPGGVQVVEVH---------------KTSATIQWT-DGATNGRPITHY 213
                  +   V  V+                       +WT     +GR +   
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 89  PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 148
           P++ +       L CS           +W             E+          +L +TN
Sbjct: 8   PELVLNVSSTFVLTCSGSAP------VVWERMSQEP----PQEMAKAQDGTFSSVLTLTN 57

Query: 149 ASFADAGEYECVVKSTVGKISTKTT---VIVEGPPGLP 183
            +  D GEY C    + G  + +     + V  P    
Sbjct: 58  LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF 95

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 86.4 bits (214), Expect = 6e-20
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 25/175 (14%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           +  +VT+ C    +P+     W  +GN+I +                 + +DSG Y+C  
Sbjct: 18  QEDSVTLTCQGARSPESDSIQWFHNGNLIPT-------HTQPSYRFKANNNDSGEYTCQT 70

Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
                 D     L VL      +   P +       + LRC +  ++ L V   +  NG 
Sbjct: 71  GQTSLSDPV--HLTVLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKPL-VKVTFFQNGK 125

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIV 176
                                  I  A+ + +G+Y C         S+K  T+ V
Sbjct: 126 SQKFSH-----------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 1   YAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
              EG  + + C+     P  K  + ++G             +    I   +   SG Y 
Sbjct: 96  EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----LDPTFSIPQANHSHSGDYH 150

Query: 60  CTATNVHGMDESK 72
           CT    + +  SK
Sbjct: 151 CTGNIGYTLFSSK 163

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 16/93 (17%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           PP I +    ++ L C          +  W HNG  I                       
Sbjct: 11  PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPT-------------HTQPSYRF 56

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            A+  D+GEY C    T   +S    + V    
Sbjct: 57  KANNNDSGEYTCQTGQTS--LSDPVHLTVLFEW 87

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 84.8 bits (210), Expect = 6e-20
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
             G   + C    +P P  +W+KDG ++     R K  ENG L I      D+G Y+C A
Sbjct: 22  VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIA 81

Query: 63  TNVHGMDESKGRLIVLHGPS 82
           +   G       + V     
Sbjct: 82  STPSGEATWSAYIEVQEFGV 101

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 85  EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGL 143
            Q P   T+A      L C A    +  +  +W  +GV +        +   I   + G+
Sbjct: 12  RQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLV------STQDSRIKQLENGV 63

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           L+I  A   D G Y C+  +  G+ +    + V+   
Sbjct: 64  LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 84.3 bits (209), Expect = 9e-20
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  V       +P      + +   + T+I VTW        +  G +  +++ Y
Sbjct: 1   GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPV----SGNGEIQNYKLYY 55

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            ++   +E  V      + +   I GL+  T+Y  +V+AYN  G G  +     RT   +
Sbjct: 56  MEKGTDKEQDV----DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111

Query: 493 PQKPPSA 499
              P S 
Sbjct: 112 G--PSSG 116

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S R   +   + P  P   +     +PT++ VTW   +P      I  YK+   E
Sbjct: 1   GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYME 57

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
              D  +  D      ++    I  L     Y  RV+A++  G G  S+P +  +   +
Sbjct: 58  KGTDKEQDVDV-----SSHSYTINGLKKYTEYSFRVVAYNKHGPGV-STPDVAVRTLSD 110

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              PG    ++      TS T+ W    +    I +YK+           +V        
Sbjct: 15  VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVD------- 67

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                     +I   L  ++ Y F+V+A N+ G G  +  
Sbjct: 68  ----VSSHSYTING-LKKYTEYSFRVVAYNKHGPGVSTPD 102

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 22/94 (23%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           ++++WE  P    N     YK+++ +K   + Q              V + S  Y     
Sbjct: 34  ITVTWET-P-VSGNGEIQNYKLYYMEKGTDKEQD-------------VDVSSHSYTINGL 78

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
             YTEY  +V A N  GPG  +  V + +  D  
Sbjct: 79  KKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 85.8 bits (212), Expect = 1e-19
 Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 32/186 (17%)

Query: 1   YAGEGGNVT--IFCNPEAAPKPKFVWKKDGNIIGS----------GGRRKIFENGNLLIS 48
           +   G  +   I          +  W++   ++             G  +I  NG+L I 
Sbjct: 7   WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 108
            ++RDDSG Y+ T  + +G       L +       E +   +      N  L C     
Sbjct: 67  NLTRDDSGTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYWECSNATLTCEV--L 120

Query: 109 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 168
           E  DV          + ++    +     N                  ++C   + V + 
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQKTMSYQWTN--------------LRAPFKCKAVNRVSQE 166

Query: 169 STKTTV 174
           S    V
Sbjct: 167 SEMEVV 172

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 19/143 (13%)

Query: 98  NLQLRCSAHTEELLDVAYIWTHNGVRI-----GNMDLNELETPNINIDGGLLEITNASFA 152
           NL +     T+++ +V   W      +           +     I  +G L  I N +  
Sbjct: 15  NLNIPNFQMTDDIDEV--RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK-IKNLTRD 71

Query: 153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE----------VHKTSATIQWTD 202
           D+G Y   V ST G       + +     +   +   E          +  T   ++   
Sbjct: 72  DSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ 131

Query: 203 GATNGRPITHYKI-IARTNWNST 224
           G  + R +    +    TN  + 
Sbjct: 132 GKEHLRSLRQKTMSYQWTNLRAP 154

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
                        P+P  +W KDG  I  GG+ K+ E+     L I      DSG+Y+C
Sbjct: 20 SDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTC 79

Query: 61 TATNVHGMDESKGRLIV 77
          T  N  G   S  +L +
Sbjct: 80 TVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
           IWT +G  I        +     +  D G   LEI     +D+G Y C VK++ G +S+ 
Sbjct: 39  IWTKDGKAIT-------QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91

Query: 172 TTVIVEG 178
             + ++ 
Sbjct: 92  CKLTIKA 98

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 82.7 bits (204), Expect = 3e-19
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR-TNWNSTWFNVSEHV---I 233
           G    P    V  +   S  ++W     +G PI  +K+  R       W   ++++    
Sbjct: 1   GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
            K          AS+ + L P  TY F+++A       + S+ S ++   
Sbjct: 61  PKWNSELGKSFTASVTD-LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 64.6 bits (157), Expect = 7e-13
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV--RVWEVDQDMSRANDTIIP 549
               PP+  ++  ++  +V + W    P  +  PI+ +KV  R+    ++    ND I  
Sbjct: 1   GSTYPPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58

Query: 550 --------VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
                   +G +  A + DL P   Y  R+LA  +  D + S+ +  F +
Sbjct: 59  GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY--------WK---EDNPEET 441
            P        +  ++ + W        N    ++  +++Y        W+   ++ P   
Sbjct: 5   PPTPPNVTRLSDESVMLRWMV----PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60

Query: 442 AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             +         A +  L+P   Y  +++A  +  +  ES 
Sbjct: 61  PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 88.4 bits (218), Expect = 4e-19
 Identities = 47/310 (15%), Positives = 82/310 (26%), Gaps = 62/310 (20%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGN--------IIGSGGRRKIFENGNLLISPVSRDDS 55
               +    +   +     +W                    R   E   L   P   +D+
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRC---SAHTEE 109
           G Y+C   N     +    L V+   S +    +LP       +   ++ C     +   
Sbjct: 92  GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 110 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV---- 165
            +     W     +I N         N+  +G  L    A  ++ G Y CVV        
Sbjct: 152 SVKPTITWYMGCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204

Query: 166 GKISTKTTVIVEGPP--------GLPGGVQVVEVH-----------------KTSATIQW 200
             ++   TV V G P          P    V E                    +   + W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264

Query: 201 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 260
           T    +G+      I            ++E +     +  T  +  SI+ V        +
Sbjct: 265 TI---DGKKPDDITIDVT---------INESISHSRTEDETRTQILSIKKVTSEDLKRSY 312

Query: 261 KVIAGNELGY 270
              A +  G 
Sbjct: 313 VCHARSAKGE 322

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 82.2 bits (203), Expect = 5e-19
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 4/127 (3%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S   T       P + P GV +      A+ V+W    + +      +  + +++
Sbjct: 1   GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            +              T+ +     GL+P+T Y   VM   N      S      TY  +
Sbjct: 61  -RTSFSASAKYKSEDTTSLS-YTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEAS 118

Query: 493 PQKPPSA 499
              P S 
Sbjct: 119 G--PSSG 123

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 21/113 (18%), Positives = 30/113 (26%), Gaps = 5/113 (4%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE--PIIGYKVRV 533
           G    S           P  PP  V    +    V V+W   S    ++   +  Y VR 
Sbjct: 1   GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60

Query: 534 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
                  ++          +L      L P   Y   V+   N      S  A
Sbjct: 61  RTSFSASAK---YKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 15/123 (12%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNST 224
              +   +  P   P GVQ V +   +  + W D +         +  Y +  RT+++++
Sbjct: 8   FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67

Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
                          YT          L P + YEF V+          S  +    T  
Sbjct: 68  A---KYKSEDTTSLSYT------ATG-LKPNTMYEFSVMVTKNRRSSTWSMTAHAT-TYE 116

Query: 285 DKP 287
              
Sbjct: 117 ASG 119

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 20/126 (15%)

Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEP--LPREKQNAPNIYYKIF 326
           SS  P        P   P  +     +   L+     +SW    +P+ ++ +    Y + 
Sbjct: 5   SSGFPTSVPDLSTPMLPPVGV-----QAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR 59

Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIF 384
           WR       + ++                P     T YE  V    +      S      
Sbjct: 60  WRTSFSASAKYKSED--TTSLSYTATGLKP----NTMYEFSVMVTKNRRSSTWSMTAHAT 113

Query: 385 SAEDMP 390
           + E   
Sbjct: 114 TYEASG 119

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           EG +    C+ +  P P   W + G ++ +  R ++          IS V   D G YS 
Sbjct: 28  EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87

Query: 61  TATNVHGMDESKGRLIV 77
              N  G  E++  L +
Sbjct: 88  VVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 86  QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
            L  +I       T+    + +  C    E +  V   W   G  +     +++ T    
Sbjct: 12  TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTV--TWLRKGQVLSTSARHQVTTTK-- 67

Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
                 EI++   +D G Y  VV+++ GK   + T+ ++
Sbjct: 68  -YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 87.2 bits (215), Expect = 5e-19
 Identities = 21/217 (9%), Positives = 54/217 (24%), Gaps = 36/217 (16%)

Query: 4   EGGNVTIFCNPEA-APKPK---FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
            G   T+        P P    + W KD     +           L ++  + +++G Y 
Sbjct: 16  AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYK 68

Query: 60  CTATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHT------EELL 111
            T  +   M   +  + ++           P    +++  +++L  +          +  
Sbjct: 69  VTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNY 128

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
           ++ Y W+     I                   + I   +    G Y   V       +  
Sbjct: 129 ELHYSWSKGEDVIDT--------------TQDITIQEFTADKNGVYTVKVWGESEDSAAS 174

Query: 172 TTVIVEGPP---GLPGGVQVVEVHKTSATIQWTDGAT 205
            +  +                       ++ +     
Sbjct: 175 ASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 74.5 bits (182), Expect = 1e-14
 Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 34/210 (16%)

Query: 4   EGGNVTIFCN--------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDS 55
              +V +           P    +  + W K  ++I +          ++ I   + D +
Sbjct: 106 SQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------TQDITIQEFTADKN 157

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLD-- 112
           G+Y+           +     ++      +Q   +  T+A    + L      + + D  
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSS 217

Query: 113 ------VAYIWTHNG------VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
                 + Y W            IG+     LE  +I  DG L    +A++ D  ++ CV
Sbjct: 218 GMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF-KESATYDDTAKFWCV 276

Query: 161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
            K          TV V         ++VV+
Sbjct: 277 AKLYQQ--IEDETVEVAASTSRKCSMEVVK 304

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 81.2 bits (201), Expect = 6e-19
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
          EG +V +    +  PKP   W ++   +    RR   E       L I    R D+G Y+
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYT 78

Query: 60 CTATNVHGMDESKGRLIV 77
          C A N +G  + + RL V
Sbjct: 79 CKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 15/102 (14%)

Query: 86  QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
           + PP         ++   +++ +      E    V   W  N   +        E     
Sbjct: 3   KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV--SWLRNRQPVRPDQRRFAEEA--- 57

Query: 139 IDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +GGL  L I  A   DAG Y C   +  G    +  + V G
Sbjct: 58  -EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 84.2 bits (208), Expect = 8e-19
 Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           E  +VT+ C    +P+     W  + ++I S       +  +  I   + DDSG Y C  
Sbjct: 21  EKDSVTLKCQGAYSPEDQSTQWFHNESLISS-------QASSYFIDAATVDDSGEYRCQT 73

Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
                 D    +L V  G    +   P+        + LRC +     L     +  NG 
Sbjct: 74  QLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGK 128

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPG 181
                                  I  A+  D+G Y C     +    S    + +     
Sbjct: 129 GRKYFH-----------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177

Query: 182 LP 183
           + 
Sbjct: 178 VS 179

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 1   YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
              E   + + C+        K  + ++G             N +  I   +  DSG Y 
Sbjct: 99  VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-----HNSDFYIPKATLKDSGSYF 153

Query: 60  CTATNVHGMDESKG-RLIVLHGPS 82
           C          S+  ++ +  G +
Sbjct: 154 CRGLVGSKNVSSETVQITITQGLA 177

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 83.9 bits (207), Expect = 9e-19
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
             +  + WN  +         +  + +++  +++        +     ++  I GL+P  
Sbjct: 15  PNSHPIQWNAPQ------PSHISKYILRWRPKNSVGRWKEATIPGHLNSY-TIKGLKPGV 67

Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKP--------------PSAVHIKGINPTT 509
            Y  ++++    G    +      T    P                  ++  +  I  ++
Sbjct: 68  VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127

Query: 510 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 569
             V+W   S       + G++V     ++        +         +I DL PG++Y +
Sbjct: 128 FVVSWVSASD-----TVSGFRVEYELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIV 180

Query: 570 RVLAFSNGGDG 580
            V   S  G+ 
Sbjct: 181 NVYQISEDGEQ 191

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 32/193 (16%), Positives = 53/193 (27%), Gaps = 29/193 (15%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             I W       Q +    Y + WR KN      E         +    I        YE
Sbjct: 18  HPIQWNAP----QPSHISKYILRWRPKNSVGRWKEATI---PGHLNSYTIKGLKPGVVYE 70

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQ--------------VAPQGVFSRGFNSTAINV 409
            ++ +I   G    +      ++   P               +           +++  V
Sbjct: 71  GQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVV 130

Query: 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
           +W             + G R++Y   +  +E     L  T  +   I  L P  KY V V
Sbjct: 131 SWVSAS-------DTVSGFRVEYELSEEGDEPQYLDLPSTATS-VNIPDLLPGRKYIVNV 182

Query: 470 MAYNNAGEGPESE 482
              +  GE     
Sbjct: 183 YQISEDGEQSLIL 195

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 38/221 (17%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           GP      +        S  IQW   A     I+ Y +  R   +       E  I   +
Sbjct: 2   GPV--EVFITETPSQPNSHPIQWN--APQPSHISKYILRWRPKNSVGR--WKEATIPGHL 55

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP----------SSPSPQYNTPADKP 287
           + YT      I+  L P   YE ++I+  + G+ E           S+P        +  
Sbjct: 56  NSYT------IKG-LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETT 108

Query: 288 YQAPSRIGG---GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
             +P                 +SW              +++ +    + + + + L    
Sbjct: 109 PFSPLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD-EPQYLDLPS 162

Query: 345 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
                 +   +P      +Y V V  I++ G        + 
Sbjct: 163 TATSVNIPDLLPG----RKYIVNVYQISEDGEQSLILSTSQ 199

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
               +      P +  + W    PS     I  Y +R    +    R  +  IP G+   
Sbjct: 4   VEVFITETPSQPNSHPIQWNAPQPS----HISKYILRWRPKNSV-GRWKEATIP-GHLNS 57

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             I  L PG  Y  ++++    G   ++    T
Sbjct: 58  YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFT 90

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 12/114 (10%)

Query: 162 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 221
            ST    +T T       P +     V E+  +S  + W         ++ +++    + 
Sbjct: 94  TSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSE 150

Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
                      +              I + L+P   Y   V   +E G      
Sbjct: 151 EGDE--PQYLDLPSTATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLIL 195

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 80.9 bits (200), Expect = 1e-18
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 385 SAEDMPQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-PEET 441
           S    P  AP+   V +R     A+ V+W P         G++  + + Y  + N P + 
Sbjct: 3   SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL----EANGKITAYILFYTLDKNIPIDD 58

Query: 442 AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
            +       R    I+ L  DT YY ++ A N+ G GP S+  L RT + +   P S 
Sbjct: 59  WIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG--PSSG 114

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 488 TYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 545
           +    P   P  + +      P  V V+W+   P      I  Y +              
Sbjct: 3   SGSSGPTSAPKDLTVITREGKPRAVIVSWQ--PPLEANGKITAYILFYTLDKNIPIDDWI 60

Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
                G+ L   I+DL+    Y+ R+ A ++ G G +S P I F+  + 
Sbjct: 61  METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP-ILFRTLKV 108

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 177 EGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
            GP   P  + V   E    +  + W         IT Y +    + N    +     I 
Sbjct: 6   SGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                   R    I + L   + Y F++ A N  G G  S P   + T     
Sbjct: 66  ------GDRLTHQIMD-LNLDTMYYFRIQARNSKGVGPLSDPI-LFRTLKVSG 110

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 281 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 340
           ++ +  P  AP  +     +    ++     P  + N     Y +F+    +       +
Sbjct: 2   SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61

Query: 341 KEY-GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVA 393
           +   G+     +          T Y  ++QA N  G GP S+ +   + +     +
Sbjct: 62  ETISGDRLTHQIMDLNL----DTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPSS 113

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 85.6 bits (211), Expect = 2e-18
 Identities = 42/296 (14%), Positives = 76/296 (25%), Gaps = 24/296 (8%)

Query: 305 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 364
            +  + +     NA  I +K      N      E          +V          +   
Sbjct: 27  VLKEKCMDYFHVNANYIVWK-----TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 81

Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
            +     +       V  I     +P   P+ +         +   W+          GR
Sbjct: 82  NILTFGQLE----QNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDG---------GR 128

Query: 425 LIGHRIKY--WKEDNPEETAVYYLSRTTRNW-ALIVGLQPDTKYYVKVMAYNNAGEGPES 481
                  +    E    + A     R T     +           V V A N  G+    
Sbjct: 129 ETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 188

Query: 482 ERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS 541
               +  Y+  P  PP  + +      +  +   + +PS +   I+ Y ++    D    
Sbjct: 189 HINFDPVYKVKPN-PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW 247

Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 595
                           + DL P   Y  R+      G G  S  S   +    E++
Sbjct: 248 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 303

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 84.1 bits (207), Expect = 5e-18
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 31/313 (9%)

Query: 87  LPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 141
            P    +  H N    C           +     +W  N   I            IN   
Sbjct: 10  SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI-----INRTA 64

Query: 142 GLLEITNASFADAGEY-ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 200
             +  T+ +  +       +    + +     T+I   PP  P  +  +         +W
Sbjct: 65  SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 124

Query: 201 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 260
             G       T++ + +    +      ++                +++   V +   E 
Sbjct: 125 DGG-RETHLETNFTLKSEWATHKFADCKAKR---------DTPTSCTVDYSTVYFVNIEV 174

Query: 261 KVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 318
            V A N LG       +  P Y    + P+     +         L ++W       ++ 
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHN--LSVINSEELSSILKLTWTNPSI--KSV 230

Query: 319 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP-- 376
             + Y I +R K+ + +     ++      +   +     +TEY  +++ + + G G   
Sbjct: 231 IILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289

Query: 377 -ESEVVTIFSAED 388
             SE  +  + ED
Sbjct: 290 DWSEEASGITYED 302

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 75.2 bits (184), Expect = 5e-15
 Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 33/301 (10%)

Query: 4   EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 56
              N T  C       +         VWK +   I       I    + +        + 
Sbjct: 18  LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI 77

Query: 57  IYSCTATNVH--GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 114
             +C          +     +I    P   + L     +   + ++       E  L+  
Sbjct: 78  QLTCNILTFGQLEQNVYGITIISGLPPEKPKNL--SCIVNEGKKMRCEWDGGRETHLETN 135

Query: 115 YIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
           +         +  +         +  +D   +   N             ++ +GK+++  
Sbjct: 136 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV------WVEAENALGKVTSDH 189

Query: 173 TVIVEG---PPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 227
                     P  P  + V   E   +   + WT+ +     I  Y I  RT   STW  
Sbjct: 190 INFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQ 249

Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPAD 285
           +         D  + R   ++++ L P++ Y F++    E G G  S  S      T  D
Sbjct: 250 I------PPEDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302

Query: 286 K 286
           +
Sbjct: 303 R 303

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 85.7 bits (211), Expect = 2e-18
 Identities = 43/293 (14%), Positives = 93/293 (31%), Gaps = 14/293 (4%)

Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
           + W       ++  N+ +   ++K     +   +  +                Y E +++
Sbjct: 21  LRWNRSD---ESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 77

Query: 366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL 425
           ++A  +       EV +           P+        +  I+++    + +   + G  
Sbjct: 78  IRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136

Query: 426 IGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG--EGPESER 483
             + +  WK  +  E  +        +   I  L P+T Y +KV A        G  S  
Sbjct: 137 FTYSLVIWKNSSGVEERI----ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPV 192

Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS--PSFEEEPIIGYKVRVWEVDQDMS 541
           +  +T  +    PP  + +   N     + W Y     +F+ + +  +  R         
Sbjct: 193 HCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKW 251

Query: 542 RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
           +       V  T      ++     Y +RV A S+G +    S  I F    +
Sbjct: 252 KQIPDCENVKTTQCVFPQNVFQKGIYLLRVQA-SDGNNTSFWSEEIKFDTEIQ 303

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 71.5 bits (174), Expect = 1e-13
 Identities = 35/308 (11%), Positives = 78/308 (25%), Gaps = 28/308 (9%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  V+V  +   +  ++W     +   +T +    +      W  +S         +   
Sbjct: 7   PQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGC-------QNIT 57

Query: 243 RKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKI 301
             + +  ++ L  +   + ++ A  E            +          P          
Sbjct: 58  STKCNFSSLKLNVYEEIKLRIRA--EKENTSSWYEVDSFTPFRKAQIGPPEVHLEAED-- 113

Query: 302 GDLSISWEP----LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
             + I   P          +  +  Y +   K +    +      Y    I  +      
Sbjct: 114 KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI-YSRHKIYKLS----- 167

Query: 358 YYTEYEVKVQAINDVGP--GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE 415
             T Y +KV+A        G  S V  I +  +     P+ +     N   + + W+   
Sbjct: 168 PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTY 226

Query: 416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWA-LIVGLQPDTKYYVKVMAYNN 474
                    L     +       +   +                +     Y ++V A + 
Sbjct: 227 ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 286

Query: 475 AGEGPESE 482
                 SE
Sbjct: 287 NNTSFWSE 294

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEH 231
           +    GP   P  + V +V  T+ T++W      G   I  Y +      +  W   ++ 
Sbjct: 2   SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61

Query: 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            + +    +T      +++ L   +   F+V+  N  G  EP++  
Sbjct: 62  PVERC--GFT------VKD-LPTGARILFRVVGVNIAGRSEPATLL 98

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRAND 545
           +    P   P  + ++ +  TT  + WR   P       I GY V       +    AN 
Sbjct: 3   SGSSGPTSAPQHLTVEDVTDTTTTLKWR--PPDRIGAGGIDGYLVEYCLEGSEEWVPANK 60

Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
             +         + DL  G R   RV+  +  G    ++ 
Sbjct: 61  EPV---ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 19/118 (16%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY-YLSRTTR 451
           APQ +       T   + W P +       G + G+ ++Y  E + E             
Sbjct: 11  APQHLTVEDVTDTTTTLKWRPPD---RIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 509
               +  L    +   +V+  N AG    +                  V I+   P++
Sbjct: 68  --FTVKDLPTGARILFRVVGVNIAGRSEPAT-------------LLQPVTIRESGPSS 110

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
            G N     N ++ P  +  W  +G  +    +           L I     DDSG Y  
Sbjct: 22  CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA 81

Query: 61  TATNVHGMDESKGRLIVLHGPSY 83
             TN  G       L V  G  Y
Sbjct: 82  VCTNYKGEASDYATLDV-TGGDY 103

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 73  GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 132
           G   + H P    ++     +   +N +   +  ++   +V   W HNGV +        
Sbjct: 1   GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEV--KWYHNGVELQ------- 50

Query: 133 ETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
           E+  I+     G+  LEI +    D+G Y  V  +  G+ S   T+ V G 
Sbjct: 51  ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 18/74 (24%), Positives = 26/74 (35%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          EG +  + C+    P P+  W  +G  I             L I     +D G Y+C A 
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84

Query: 64 NVHGMDESKGRLIV 77
          N  G       + V
Sbjct: 85 NALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 116 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 174
            W  NG  I           +    G   L I +A   D G Y C+ ++ +G++S    V
Sbjct: 44  TWLLNGQPIQ-------YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96

Query: 175 IV 176
            V
Sbjct: 97  TV 98

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 81.8 bits (202), Expect = 3e-18
 Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 4   EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           E  +VT+ C    +P+     W  + ++I S       +  +  I   + +DSG Y C  
Sbjct: 21  EKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQT 73

Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 122
                 D    +L V  G    +   P+        + LRC +     L     +  NG 
Sbjct: 74  NLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGK 128

Query: 123 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 176
                                  I  A+  D+G Y C        + S    + +
Sbjct: 129 DRKYFH-----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 6/73 (8%)

Query: 1   YAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 59
              E   + + C+        K  + ++G             N +  I   +  DSG Y 
Sbjct: 99  VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-----HNSDFHIPKATLKDSGSYF 153

Query: 60  CTATNVHGMDESK 72
           C          S+
Sbjct: 154 CRGLVGSKNVSSE 166

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           P   ++    ++ L+C        D +  W HN   I +                   I 
Sbjct: 14  PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS-------------QASSYFID 59

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ-WTDGATN 206
            A+  D+GEY C    +    S    + V     L    + V   +    ++  +   T 
Sbjct: 60  AATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117

Query: 207 GRPITHYK 214
              +T+ +
Sbjct: 118 LHKVTYLQ 125

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 78.6 bits (194), Expect = 7e-18
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPVSRDDSGIY 58
           EG  VT  C     PKPK  W KDG  I        I  + +    L  +  + DD G Y
Sbjct: 22  EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81

Query: 59  SCTATNVHGMDESKGRLIV 77
           +  A N  G     GRL+V
Sbjct: 82  TIMAANPQGRISCTGRLMV 100

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 175
            W  +G +I +   +             L  T ++  D G Y  +  +  G+IS    ++
Sbjct: 41  YWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

Query: 176 VEGPPGLPG 184
           V+     P 
Sbjct: 100 VQAVNSGPS 108

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTA 62
            G ++ + C     P P+ +W KD   +       + + N NL I  V ++D G+Y+C A
Sbjct: 24  IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83

Query: 63  TNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
            +V G  + +   I+        +   + T
Sbjct: 84  CSVLGCAKVEAFFII--------EGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 85  EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
           E++ P I       T +   ++++ C+A       +  +W  +   +       +E   I
Sbjct: 7   ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-------VEDSGI 57

Query: 138 NI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            +      L I      D G Y C   S +G    +   I+EG  
Sbjct: 58  VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGI 57
           G+G +          P P+  W K+G  I    R   +   +    L+I  V+ +DS  
Sbjct: 17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76

Query: 58 YSCTATNVHGMDESKGRLIV 77
              A N+ G   S   L+V
Sbjct: 77 IMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 173
            W  NGV+I   D      P    +  +  L I + +  D+        +  G+ S+   
Sbjct: 38  EWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93

Query: 174 VIVEG 178
           ++V+ 
Sbjct: 94  LLVQA 98

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
           EG      C  E  P P+ +W KD N +      +I  +      L IS V  DD   Y+
Sbjct: 55  EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
           C A N  G       L+V        +   +  
Sbjct: 115 CKAVNSLGEATCTAELLV-ETMGKEGEGEGEGE 146

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 47  ISPVS-RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-------ITIAAHRN 98
           IS +S R  SG    +  N + ++     L  +        + P        + +     
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSA 58

Query: 99  LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEY 157
            +  C        +V  +W  +   +      +++    + +G   L I+     D  +Y
Sbjct: 59  ARFDCKVEGYPDPEV--MWFKDDNPVKESRHFQIDY---DEEGNCSLTISEVCGDDDAKY 113

Query: 158 ECVVKSTVGKISTKTTVIVEGPP 180
            C   +++G+ +    ++VE   
Sbjct: 114 TCKAVNSLGEATCTAELLVETMG 136

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
           EG    + C     P P   W+ DG  +      K+    N    L+I PV+  D+GIY+
Sbjct: 23  EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYT 82

Query: 60  CTATNVHGMDESKGRLIVLHGPS 82
           C ATN  G +     L+V    S
Sbjct: 83  CIATNRAGQNSFSLELVVAAKES 105

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 80  GPSYYEQLPPKI-------TIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDL 129
           G S      P         T+   +  ++ C      T +L      W  +G  +     
Sbjct: 1   GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL-----SWQLDGKPVRP--- 52

Query: 130 NELETPNINIDGG-LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 184
           +      +  +G   L I   +  DAG Y C+  +  G+ S    ++V      P 
Sbjct: 53  DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           G    +  +   AP P   W    +         +    +   +      R DSG Y  
Sbjct: 16 AGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKL 75

Query: 61 TATNVHGMDESKGRLIV 77
             N  G DE+   +IV
Sbjct: 76 KVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 87  LPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
           L PKI        I A     L               WT             ++  +   
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA--TWTVGDSGAALAPELLVDAKS--- 55

Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
               +   +A  AD+G Y+  VK+ +G+      VIV+
Sbjct: 56  STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
          EG    +       P P   W  +G  + S    K+  +      L+   V   D+G Y+
Sbjct: 19 EGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYA 78

Query: 60 CTATNVHGMDESKGRLIVL 78
          C A N  G      +L VL
Sbjct: 79 CVAKNRAGEATFTVQLDVL 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 173
            W  NG  + + DL+++       + GL  L       +DAG Y CV K+  G+ +    
Sbjct: 38  SWYLNGRTVQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93

Query: 174 VIVEG 178
           + V  
Sbjct: 94  LDVLA 98

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 79.6 bits (196), Expect = 4e-17
 Identities = 28/205 (13%), Positives = 53/205 (25%), Gaps = 9/205 (4%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+ +         +   W+                 +K     +            T  
Sbjct: 10  KPKNLSCIVNEGKKMRCEWDG-----GRETHLETNFTLKSEWATHKFADCKAKRDTPTSC 64

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 512
             +           V V A N  G+        +  Y+  P  PP  + +      +  +
Sbjct: 65  T-VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSIL 122

Query: 513 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 572
              + +PS +   I+ Y ++    D                    + DL P   Y  R+ 
Sbjct: 123 KLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR 182

Query: 573 AFSNGGDGRMS--SPAITFQMGEEK 595
                G G  S  S   +    E++
Sbjct: 183 CMKEDGKGYWSDWSEEASGITYEDR 207

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 70.8 bits (173), Expect = 5e-14
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 17/202 (8%)

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
            +   W+     ++      + +               K   +   +     S  Y+   
Sbjct: 23  KMRCEWDG---GRETHLETNFTLKSEWATHK---FADCKAKRDTPTSCTVDYSTVYFVNI 76

Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG--VFSRGFNSTAINVTWNPIELIREN 420
           EV V+A N +G    S+ +       +    P    V +    S+ + +TW         
Sbjct: 77  EVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN----PSI 131

Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLS-RTTRNWALIVGLQPDTKYYVKVMAYNNAGEG- 478
               ++ + I+Y  +D    + +      +TR+   +  L+P T+Y  ++      G+G 
Sbjct: 132 KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 191

Query: 479 --PESERYLERTYRKAPQKPPS 498
               SE     TY   P K PS
Sbjct: 192 WSDWSEEASGITYEDRPSKEPS 213

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 67.3 bits (164), Expect = 6e-13
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           PP  P  +  +         +W  G       T++ + +    +      ++        
Sbjct: 7   PPEKPKNLSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKR------- 58

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS---RIG 295
                   +++   V +   E  V A N LG     +       P  K    P     + 
Sbjct: 59  --DTPTSCTVDYSTVYFVNIEVWVEAENALG---KVTSDHINFDPVYKVKPNPPHNLSVI 113

Query: 296 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 355
                   L ++W       ++   + Y I +R K+ + +     ++      +   +  
Sbjct: 114 NSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQD 170

Query: 356 EFYYTEYEVKVQAINDVGPG---PESEVVTIFSAEDMPQVAP 394
              +TEY  +++ + + G G     SE  +  + ED P   P
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)

Query: 160 VVKSTVGKISTKT---TVIVEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYK 214
             ++ +GK+++       + +  P  P  + V   E   +   + WT+ +     I  Y 
Sbjct: 81  EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN 140

Query: 215 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
           I  RT   STW  +         D  + R   ++++ L P++ Y F++    E G G  S
Sbjct: 141 IQYRTKDASTWSQIPP------EDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWS 193

Query: 275 SPSPQYN--TPADKPYQAPS 292
             S + +  T  D+P + PS
Sbjct: 194 DWSEEASGITYEDRPSKEPS 213

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEH 231
              P  P  +  VE + ++A +Q+ +  AT G PI  YK   R      W+S W++  E 
Sbjct: 5   SSGPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63

Query: 232 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 291
            +             +I   L P +TY  ++ A N  G GE S+ S     P  +P  AP
Sbjct: 64  SM---------EGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP-SAP 112

Query: 292 SRIGGGGG 299
              G G  
Sbjct: 113 KLEGSGPS 120

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 2/105 (1%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVD-QDMSRANDTIIP 549
           +    PS+  I  + P +     ++  P      PI+ YK     V  +           
Sbjct: 3   SGSSGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
                   IV L P   Y +R+ A +  G G +S+ +        
Sbjct: 63  ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR 107

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           + +  P  +PS             + ++  P      P + YK  WR   +  + S+   
Sbjct: 3   SGSSGP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 59

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ 395
                   +V I      T Y V++ A+N  G G  S      +       AP+
Sbjct: 60  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 24/116 (20%)

Query: 404 STAINVTWN--------PIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR--TTRNW 453
           S+   V ++        PI           + ++ ++         + +Y ++  +    
Sbjct: 20  SSTAQVQFDEPEATGGVPI-----------LKYKAEWRAVGEEVWHSKWYDAKEASMEGI 68

Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 509
             IVGL+P+T Y V++ A N  G G  S       ++  P + PSA  ++G  P++
Sbjct: 69  VTIVGLKPETTYAVRLAALNGKGLGEISA---ASEFKTQPVREPSAPKLEGSGPSS 121

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 83.1 bits (204), Expect = 4e-17
 Identities = 49/329 (14%), Positives = 107/329 (32%), Gaps = 40/329 (12%)

Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR------PITHYKIIARTNWNSTWF 226
           T+     P  P  +Q+    +    + W+    + +          ++++ +   +S W 
Sbjct: 102 TLTQHVQPPEPRDLQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS-WE 159

Query: 227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP----QYNT 282
           + +  +                   L+P STY  +V      G      PS         
Sbjct: 160 DAAILLSNTSQATLGPEH-------LMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD 212

Query: 283 PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 342
                   P  +         LS SWE     K+ A ++ + +F++   D        +E
Sbjct: 213 SQPGDEAQPQNLECFFDGAAVLSCSWEV---RKEVASSVSFGLFYKPSPDAGSAVLLREE 269

Query: 343 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG-------PESEVVTIFSAEDMPQVAPQ 395
             +    V+R      +T +  ++   +    G       P      I S+ ++    P 
Sbjct: 270 ECSP---VLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPS 326

Query: 396 GVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWAL 455
              ++  +  + ++ W  +++  E+I        I+Y K+    +      +    +   
Sbjct: 327 LQVTK--DGDSYSLRWETMKMRYEHID---HTFEIQYRKDTATWKD-SKTETLQNAHSMA 380

Query: 456 IVGLQPDTKYYVKV--MAYNNAGEGPESE 482
           +  L+P T+Y+ +V          G  SE
Sbjct: 381 LPALEPSTRYWARVRVRTSRTGYNGIWSE 409

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 76.2 bits (186), Expect = 6e-15
 Identities = 47/414 (11%), Positives = 110/414 (26%), Gaps = 36/414 (8%)

Query: 197 TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 256
           T +W D     R   +  +I R N +     VS  +                   ++P  
Sbjct: 20  TCRWADTQDAQRL-VNVTLIRRVNEDL-LEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77

Query: 257 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ 316
           ++    +         P                 P  +     +     ++W       Q
Sbjct: 78  SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQ 136

Query: 317 ----NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV 372
               +  ++ +++ +++  D+   +  L    N   A +        + Y  +V+     
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAIL--LSNTSQATLGPEHLMPSSTYVARVRTRLAP 194

Query: 373 GPGP---ESEVVTIFSAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIG 427
           G       S+       +  P    Q      F   +  ++ +W              + 
Sbjct: 195 GSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV-----RKEVASSVS 249

Query: 428 HRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG-------PE 480
             + Y    +     V                   T+++ ++   + A  G       P 
Sbjct: 250 FGLFYKPSPDAGSA-VLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPR 308

Query: 481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 540
                 ++       PPS    K  +  +  + W  +   +E      ++++  +     
Sbjct: 309 RAEKHIKSSVNIQMAPPSLQVTK--DGDSYSLRWETMKMRYEH-IDHTFEIQYRKDTATW 365

Query: 541 SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS----SPAITFQ 590
             +      + N     +  L P  RY  RV   ++           S A ++ 
Sbjct: 366 KDSK--TETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 68.5 bits (166), Expect = 2e-12
 Identities = 29/291 (9%), Positives = 64/291 (21%), Gaps = 16/291 (5%)

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE---FYY 359
            ++  W    ++ Q   N+       +        +   +         R          
Sbjct: 18  HITCRWAD-TQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPC 76

Query: 360 TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP--IELI 417
             + V         P          +     Q           +     +TW+       
Sbjct: 77  QSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQ 136

Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 477
              +    +   + Y +  +  E A   LS T++       L P + Y  +V      G 
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196

Query: 478 GPESE-----RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 532
                       +    +   +  P  +         +  +W       E    + + + 
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW---EVRKEVASSVSFGLF 253

Query: 533 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
                   S            L       S   R+H ++        G+  
Sbjct: 254 YKPSPDAGSAVLLREEECSPVLREG--LGSLHTRHHCQIPVPDPATHGQYI 302

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 28/214 (13%), Positives = 55/214 (25%), Gaps = 19/214 (8%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
             +  Q +      ++ I   W   +        RL+   +     ++  E     LS  
Sbjct: 2   ETIPLQTLRCYNDYTSHITCRWADTQD-----AQRLVNVTLIRRVNEDLLEPVSCDLSDD 56

Query: 450 TRN-------WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ-KPPSAVH 501
                           + P   + V  + Y +          L  T  +  Q   P  + 
Sbjct: 57  MPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ 116

Query: 502 IKGINPTTVHVTWRYVSPSFEEEPI----IGYKVRVWEVDQDMSRANDTIIPVGNTLDAD 557
           I   +     +TW     S +   +    + ++V    +      A   ++   +     
Sbjct: 117 IS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA-AILLSNTSQATLG 174

Query: 558 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 591
              L P   Y  RV      G      P+     
Sbjct: 175 PEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPE 208

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
          EGG+V   C  E   +   V W      + +  + +I        L +  +++ D G Y 
Sbjct: 15 EGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYR 74

Query: 60 CTATNVHGMDESKGRLIV 77
          C   N +G D S   L V
Sbjct: 75 CKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
            W     ++ N       +    I  + G+  L + + +  D G Y C V +  G+ S+ 
Sbjct: 35  TWYFGVRQLEN-------SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87

Query: 172 TTVIVEGPP 180
             + V+G  
Sbjct: 88  AELFVKGVR 96

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 76.7 bits (189), Expect = 5e-17
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFN 227
                      P  P  V    V      + W   A++       Y +       +    
Sbjct: 7   GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERV 66

Query: 228 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            +    G+         + +I+N L+P + Y F+V+A N+ G GE S+P 
Sbjct: 67  ENTSHPGEM--------QVTIQN-LMPATVYIFRVMAQNKHGSGESSAPL 107

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S      +   +P  AP+ V +   ++  I +TW        +  G  + + + Y
Sbjct: 1   GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPA---SDPHGDNLTYSVFY 56

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            KE    E  V   S        I  L P T Y  +VMA N  G G  S      T    
Sbjct: 57  TKEGIARER-VENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET---Q 112

Query: 493 PQKPPSA 499
           P+  PS+
Sbjct: 113 PESGPSS 119

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 534
           G    S  +   T    P   P  V    ++   + +TWR  +P+ +     + Y V   
Sbjct: 1   GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWR--TPASDPHGDNLTYSVFYT 57

Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
           +      R  +T  P    +   I +L P   Y  RV+A +  G G  SS  +  +   E
Sbjct: 58  KEGIARERVENTSHP--GEMQVTIQNLMPATVYIFRVMAQNKHGSG-ESSAPLRVETQPE 114

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 15/125 (12%)

Query: 271 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 325
              SS      T    P  AP  +         +S     ++W   P    +  N+ Y +
Sbjct: 2   SSGSSGEHAPATTGPLP-SAPRDV-----VASLVSTRFIKLTWRT-PASDPHGDNLTYSV 54

Query: 326 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFS 385
           F+ K+     + E      + G   V I +    T Y  +V A N  G G  S  + + +
Sbjct: 55  FYTKEGIARERVENTS---HPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111

Query: 386 AEDMP 390
             +  
Sbjct: 112 QPESG 116

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 80.5 bits (198), Expect = 6e-17
 Identities = 44/181 (24%), Positives = 62/181 (34%), Gaps = 32/181 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           EG  VT+ C  EA P+ K     +G      G R       LL+     D+   +SC+AT
Sbjct: 112 EGTEVTVKC--EAHPRAK--VTLNGVPAQPLGPR-----AQLLLKATPEDNGRSFSCSAT 162

Query: 64  N-VHGMDESKGR---LIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
             V G    K +   L VL+GP       P   T   +      C A    L        
Sbjct: 163 LEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCL 220

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +G                     + E    +    G Y C  +ST G+++ + TV V  
Sbjct: 221 KDGTFPLP----------------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

Query: 179 P 179
           P
Sbjct: 265 P 265

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 23/201 (11%), Positives = 48/201 (23%), Gaps = 32/201 (15%)

Query: 4   EGGNVTIFCNPEA---APKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIY 58
                T+ C+ +      + +         +          F     +      + +   
Sbjct: 17  VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
           +C     +   E+   + +   P+    L     ++    + ++C AH           T
Sbjct: 77  TCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCEAHPRA------KVT 129

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI----STKTTV 174
            NGV                     L +      +   + C     V       +    +
Sbjct: 130 LNGVPAQ-----------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 178

Query: 175 IVEGPPGL-----PGGVQVVE 190
            V   P L     PG     E
Sbjct: 179 RVLYGPRLDERDCPGNWTWPE 199

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 76.0 bits (187), Expect = 6e-17
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
               P  P  +        S  +  T     G PI  Y +  R+      +   +  +  
Sbjct: 5   SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK--VQG 61

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
             D         +E+ L     YE ++ A N LGY EP+     ++ P    
Sbjct: 62  NKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE--FSMPPKPN 104

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 453
           P  +  +  +  +  ++       +++    ++ + +KY  +D  ++     +     + 
Sbjct: 11  PPSIHGQPSSGKSFKLSITK----QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK-DH 65

Query: 454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 501
            ++  LQ    Y V++ A N  G    +    E +    P       H
Sbjct: 66  IILEHLQWTMGYEVQITAANRLGYSEPTV--YEFSMPPKPNIIKDHHH 111

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 491 KAPQKPPSA--VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII 548
           +A  + PS   +H +  +  +  ++           PI+ Y V+    D++       + 
Sbjct: 3   EASMREPSPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV- 59

Query: 549 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             GN     +  L     Y +++ A +  G    +    +
Sbjct: 60  -QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 98

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             +S     ++   AP + Y + +R K+  +   E   +     I +  +        YE
Sbjct: 24  FKLSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW---TMGYE 78

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAP 394
           V++ A N +G    +        +  P +  
Sbjct: 79  VQITAANRLGYSEPTVYEFSMPPK--PNIIK 107

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              P      QV     T A + W    +NG  +T Y++        +            
Sbjct: 5   SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV-EGSMQIC-------- 55

Query: 237 VDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
              Y G      I+  L P +TY  +V A + +G G  S       TP    
Sbjct: 56  ---YCGPGLSYEIKG-LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPPSSG 102

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
           +T   V W        +    +  +R+  W          Y     +     I GL P T
Sbjct: 21  ATCAQVNWEV----PLSNGTDVTEYRL-EWGGVEGSMQICYCGPGLS---YEIKGLSPAT 72

Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
            YY +V A +  G GP SE          P   PS+
Sbjct: 73  TYYCRVQALSVVGAGPFSE---VVACVTPPSSGPSS 105

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
                 +   + T   V W    P      +  Y++    V+  M      I   G  L 
Sbjct: 10  QCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 62

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
            +I  LSP   Y+ RV A S  G G  S  
Sbjct: 63  YEIKGLSPATTYYCRVQALSVVGAGPFSEV 92

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 22/94 (23%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
             ++WE  P          Y++ W    +   Q                 P   Y     
Sbjct: 24  AQVNWEV-PLS-NGTDVTEYRLEW-GGVEGSMQI------------CYCGPGLSYEIKGL 68

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
              T Y  +VQA++ VG GP SEVV   +     
Sbjct: 69  SPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 75.8 bits (187), Expect = 8e-17
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
            G +V +F            W K    I      K+  + N   L I    ++  G Y+ 
Sbjct: 21  AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTL 80

Query: 61  TATNVHGMDESKGRLIVLHGPS 82
              N  G  +++  L V+  P 
Sbjct: 81  LVENKLGSRQAQVNLTVVDKPD 102

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DG 141
           Q P    + A  +++L       + +     W     +I        E+ ++ +    +G
Sbjct: 12  QFPEDQKVRAGESVELFGKVTGTQPITC--TWMKFRKQI-------QESEHMKVENSENG 62

Query: 142 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 185
             L I  A     G Y  +V++ +G    +  + V   P  P G
Sbjct: 63  SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 81.8 bits (201), Expect = 1e-16
 Identities = 35/181 (19%), Positives = 51/181 (28%), Gaps = 32/181 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           EG  VT+ C      K                   +     LL+     D+   +SC+AT
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVPAQ---------PLGPRAQLLLKATPEDNGRSFSCSAT 347

Query: 64  NVHG----MDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
                          L VL+GP   E   P   T   +      C A             
Sbjct: 348 LEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN--PLPELKCL 405

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
            +G                     + E    +    G Y C  +ST G+++ + TV V  
Sbjct: 406 KDG----------------TFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

Query: 179 P 179
           P
Sbjct: 450 P 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 11/80 (13%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             E    T  C     P P+    KDG      G              V+RD  G Y C 
Sbjct: 382 WPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------SVTVTRDLEGTYLCR 431

Query: 62  ATNVHGMDESKGRLIVLHGP 81
           A +  G    +  + V   P
Sbjct: 432 ARSTQGEVTREVTVNV-LSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 64.9 bits (157), Expect = 3e-11
 Identities = 37/303 (12%), Positives = 67/303 (22%), Gaps = 26/303 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            GG+V + C+           +       ++  G  RK++E         +  +     C
Sbjct: 13  RGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYE-------LSNVQEDSQPMC 65

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTH 119
            +    G   +K  L V   P   E  P        +NL LRC         ++  +   
Sbjct: 66  YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR 125

Query: 120 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
               +        E            +          + C  +  +     +       P
Sbjct: 126 GEKELKR------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAP 179

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEHVIGKEV 237
                 +Q   +  T   +            T    +      S                
Sbjct: 180 Y----QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235

Query: 238 DRYTGRK---EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
             Y       +AS+        T              E       Y+ PA         +
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295

Query: 295 GGG 297
             G
Sbjct: 296 SEG 298

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 63.0 bits (152), Expect = 1e-10
 Identities = 27/233 (11%), Positives = 48/233 (20%), Gaps = 29/233 (12%)

Query: 4   EGGNVTIFCNPEA---APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            G N+T+ C  E          V  +    +               +          +SC
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159

Query: 61  TATNVHGMDESKG--------RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
                      +         +L     P+   QL     +       + CS      + 
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219

Query: 113 VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 171
            A +       R+        ++ +            A         C V        T 
Sbjct: 220 EAQVHLALGDQRLNPTVTYGNDSFSAKA----SVSVTAEDEGTQRLTCAVILGNQSQETL 275

Query: 172 TTVIVEGPPGLPGGVQVVEVH-------------KTSATIQWTDGATNGRPIT 211
            TV +   P     +   EV              +   T+        G    
Sbjct: 276 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ 328

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 4  EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           G +VT  C  ++ +P    VW +  N  G    R +  NG L I  V   D+G Y CT 
Sbjct: 24 PGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTIRNVQPSDAGTYVCTG 81

Query: 63 TNVHGMDESKGRLIV 77
          +N+  MD+    L V
Sbjct: 82 SNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
               ++    ++   C+A ++       +WT           N           G+L I 
Sbjct: 17  QRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLH--------NGKLPSRAMDFNGILTIR 67

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVE 177
           N   +DAG Y C   +         T+ V+
Sbjct: 68  NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P   PG    + + + + T++W     T G  IT Y +  R   N  W   +   I +  
Sbjct: 10  PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN- 68

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 277
             +T      +   L   + YEF+VIA N  G    PS PS
Sbjct: 69  -EFT------VSG-LTEDAAYEFRVIAKNAAGAISPPSEPS 101

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIP 549
           +P  PP       I   TV + W    P +     I  Y V   ++      +AN + I 
Sbjct: 9   SPIDPPGKPVPLNITRHTVTLKWA--KPEYTGGFKITSYIVEKRDLPNGRWLKANFSNIL 66

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAF-SNGGDGRMSSPAITFQMGEEKE 596
                +  +  L+    Y  RV+A  + G     S P+      ++ E
Sbjct: 67  ---ENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGK 235
                 P  + V  V  T+ T++W      G   +  Y +         W   ++ +I K
Sbjct: 5   SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
              ++T      I   L   +    +V A N  G  EP   S
Sbjct: 65  T--KFT------ITG-LPTDAKIFVRVKAVNAAGASEPKYYS 97

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIP 549
           +   PP+ + +  +  TTV + WR   P       + GY +       +    AN  +I 
Sbjct: 6   SGTSPPTLLTVDSVTDTTVTMRWR--PPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
                   I  L    +  +RV A +  G       
Sbjct: 64  ---KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE-ETAV 443
           S+       P  +       T + + W P +         L G+ ++Y  E   +   A 
Sbjct: 2   SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPD---HIGAAGLDGYVLEYCFEGTEDWIVAN 58

Query: 444 YYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
             L   T+    I GL  D K +V+V A N AG          +        P S 
Sbjct: 59  KDLIDKTK--FTITGLPTDAKIFVRVKAVNAAGASEPKY--YSQPILVKESGPSSG 110

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S    I S+  +P  AP+ V     +S  + ++W P        +G +    + +
Sbjct: 1   GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRP----PAEAKGNIQTFTVFF 55

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            +E +  E A+      +     +  L+P+  Y  +V+AYN  G G  S+     T    
Sbjct: 56  SREGDNRERALNTTQPGSLQ-LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT---Q 111

Query: 493 PQKPPSA 499
           P+  PS+
Sbjct: 112 PESGPSS 118

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
                      P  P  V  V V      + W   A     I  + +      ++    +
Sbjct: 7   GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERAL 66

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           +    G          + ++ N L P + Y F+V+A NE G GE S P      P   P
Sbjct: 67  NTTQPGSL--------QLTVGN-LKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP 116

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S +    +    P   P  V    ++   V ++WR   P+  +  I  + V    
Sbjct: 1   GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWR--PPAEAKGNIQTFTVFFSR 57

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
              +  RA +T  P   +L   + +L P   Y  RV+A++  G G  S P
Sbjct: 58  EGDNRERALNTTQP--GSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQP 105

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 17/127 (13%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 323
           G    S   P   + +  P  AP  +         +S     +SW P    +       +
Sbjct: 1   GSSGSSGK-PAIPSSSVLP-SAPRDV-----VPVLVSSRFVRLSWRP--PAEAKGNIQTF 51

Query: 324 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
            +F+ ++ D   ++         G   + + +      Y  +V A N+ GPG  S+ + +
Sbjct: 52  TVFFSREGDNRERALNTT---QPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKV 108

Query: 384 FSAEDMP 390
            +  +  
Sbjct: 109 ATQPESG 115

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S          +P   P  +       T++ V+W             L G+ ++Y
Sbjct: 1   GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPR---CE--RPLQGYSVEY 54

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
              +  E   +  +    +   ++  L P+  Y  +V A +  G G E E  +  T    
Sbjct: 55  QLLNGGELHRLN-IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI--TIESQ 111

Query: 493 PQKPPSA 499
              P S 
Sbjct: 112 VSGPSSG 118

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S  +  R     P   P+ +    + PT++ V+W+       E P+ GY V    
Sbjct: 1   GSSGSSGSHDSRLTAGVP-DTPTRLVFSALGPTSLRVSWQ---EPRCERPLQGYSVEYQL 56

Query: 536 VD-QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           ++  ++ R N   IP        + DL P   Y  RV A S  G GR     IT +
Sbjct: 57  LNGGELHRLN---IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIE 109

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 70.1 bits (172), Expect = 7e-15
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
            +  + +  G P  P  +    +  TS  + W +      P+  Y +  +         +
Sbjct: 7   GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRL 65

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
           +     +            +E+ L+P  +Y F+V A ++ G+G          +    P 
Sbjct: 66  NIPNPAQT--SVV------VED-LLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS 116

Query: 289 QA 290
             
Sbjct: 117 SG 118

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 35/137 (25%)

Query: 273 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 327
            SS S      A  P   P+R+         L      +SW+  P  +   P   Y + +
Sbjct: 4   GSSGSHDSRLTAGVP-DTPTRL-----VFSALGPTSLRVSWQE-P--RCERPLQGYSVEY 54

Query: 328 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGPGPESE 379
           +  N  E                +  P++             Y  +V+A +  G G E E
Sbjct: 55  QLLNGGELHRLN-----------IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103

Query: 380 VVTIFSAEDMPQVAPQG 396
            V     E        G
Sbjct: 104 GVIT--IESQVSGPSSG 118

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII-----GSGGRRKIFENGNLLI-----SPVSRD 53
           +G   T+ C  E  P P   W K G  +          R +  +G+L          SR 
Sbjct: 23  KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82

Query: 54  DSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQ 86
           D G+Y C A N  G   S    L V     ++  
Sbjct: 83  DEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 24/113 (21%)

Query: 85  EQLPPKIT-------IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNEL 132
           E  PP+I        ++      L C A      T         W   G R+     +  
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKGGERVETDKDDPR 58

Query: 133 ETPNINIDGGLL----EITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 180
               +   G L          S  D G Y CV ++ +G+  +   ++ V    
Sbjct: 59  SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
               P +P    + +   T  ++QW+  + T       Y +      +   F        
Sbjct: 4   GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGED 63

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
                YT      ++N L   + Y+FKVIA N  G   PS    ++ T  D   
Sbjct: 64  L---AYT------VKN-LRRSTKYKFKVIAYNSEGKSNPSEVV-EFTTCPDSGP 106

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEETAVYYLSRTTR 451
            P          T +++ W+              I + ++  +E +       Y      
Sbjct: 10  MPASPVLTKAGITWLSLQWSK----PSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLA 65

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
               +  L+  TKY  KV+AYN+ G+   SE      +   P   PS
Sbjct: 66  --YTVKNLRRSTKYKFKVIAYNSEGKSNPSE---VVEFTTCPDSGPS 107

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPV 550
           +    P++  +     T + + W    PS    +  I Y +   E++++ S         
Sbjct: 6   SGPSMPASPVLTKAGITWLSLQWS--KPSGTPSDEGISYIL---EMEEETSGYGFKPKYD 60

Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
           G  L   + +L    +Y  +V+A+++ G     S  + F    +    SG
Sbjct: 61  GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSN-PSEVVEFTTCPDSGPSSG 109

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 19/94 (20%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           LS+ W   P    +   I Y +   ++                           Y     
Sbjct: 24  LSLQWSK-PSGTPSDEGISYILEMEEETSGYGFKP-----------KYDGEDLAYTVKNL 71

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
              T+Y+ KV A N  G    SEVV   +  D  
Sbjct: 72  RRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSG 105

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYS 59
               V   C     P P   W K+G       R   ++    + +L++  V   D G Y+
Sbjct: 22  AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 81

Query: 60  CTATNVHGMDESKGRLIVL 78
           C   N +G       L V+
Sbjct: 82  CVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 88  PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 142
                + A   ++ RC A      T         W  NG          +    +     
Sbjct: 15  KRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKNGKEFKQEH--RIGGYKVRNQHW 65

Query: 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
            L + +   +D G Y CVV++  G I+    + V
Sbjct: 66  SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P  A   +     + +++++ W           G ++ + +KY ++     ++V 
Sbjct: 3   SGSSGPP-AVSDIRVTRSSPSSLSLAWAVPR----APSGAVLDYEVKYHEKGAEGPSSVR 57

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
           +L +T+ N A + GL+    Y V+V A + AG GP  + +  +T        PS+
Sbjct: 58  FL-KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT---QLDSGPSS 108

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
             S + +   +P+++ + W    P      ++ Y+V+  E   +   +   +    N   
Sbjct: 10  AVSDIRVTRSSPSSLSLAWA--VPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR-- 65

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           A++  L  G  Y ++V A S  G G         Q
Sbjct: 66  AELRGLKRGASYLVQVRARSEAGYGPFGQE-HHSQ 99

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 10/109 (9%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              P     ++V     +S ++ W         +  Y++         +           
Sbjct: 5   SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEV--------KYHEKGAEGPSSV 56

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
               T    A +   L   ++Y  +V A +E GYG          T  D
Sbjct: 57  RFLKTSENRAELRG-LKRGASYLVQVRARSEAGYGPFGQEH-HSQTQLD 103

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           + +  P  A S I         LS++W   P    +   + Y++ + +K      S    
Sbjct: 3   SGSSGP-PAVSDIRVTRSSPSSLSLAWAV-P-RAPSGAVLDYEVKYHEKGAEGPSSVR-- 57

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
            +         +        Y V+V+A ++ G GP  +     +  D  
Sbjct: 58  -FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 72.5 bits (178), Expect = 7e-16
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDS 55
              +  I    +  PKP   W  +G I+                  +G L +   +  ++
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGP 81
           G Y+  A N +G DE +     +  P
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 86  QLPPKIT----IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 141
              P IT      +  +  +  +        +   W +NG  +        +    N   
Sbjct: 2   HFAPTITFLESPTSDHHWCIPFTVKGNPKPAL--QWFYNGAILNESKYICTKIHVTNHTE 59

Query: 142 --GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
             G L++ N +  + G+Y  + K+  GK   + +    G PG
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
             + + +   + T+I +TW P         G + G+R+   +    +E  +         
Sbjct: 10  PVENLQAVSTSPTSILITWEPPA----YANGPVQGYRLFCTEVSTGKEQNI----EVDGL 61

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
              + GL+  T+Y ++ +AYN  G G  ++     T   +   P S 
Sbjct: 62  SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PSSG 106

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           P   +     +PT++ +TW    P++   P+ GY++   EV     +  +      + L 
Sbjct: 10  PVENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGKEQNIEV-----DGLS 62

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
             +  L     Y +R LA++  G G  +  
Sbjct: 63  YKLEGLKKFTEYSLRFLAYNRYGPGVSTDD 92

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              PG    +Q V    TS  I W   A    P+  Y++           N+        
Sbjct: 5   SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIE------- 57

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                      +E  L  ++ Y  + +A N  G G  +   
Sbjct: 58  ----VDGLSYKLEG-LKKFTEYSLRFLAYNRYGPGVSTDDI 93

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 22/94 (23%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           + I+WEP P    N P   Y++F  + +  + Q+             + +    Y     
Sbjct: 24  ILITWEP-P-AYANGPVQGYRLFCTEVSTGKEQN-------------IEVDGLSYKLEGL 68

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
             +TEY ++  A N  GPG  ++ +T+ +  D  
Sbjct: 69  KKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 76.8 bits (188), Expect = 1e-15
 Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 52/227 (22%)

Query: 2   AGEGGNVTIFC---NPEAAPKPKFVWKKDGNIIGS------------------GGRRKIF 40
              G +V + C     E     +  W    +   +                    R  + 
Sbjct: 17  VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76

Query: 41  -----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 95
                 +G+LL+  V + D GIY+C     +     K  + +   P      P  + +  
Sbjct: 77  GDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE----PRDLRVRV 132

Query: 96  HRNLQLRCSAHTEELLDVAYI-WT---------------HNGVRIGNMDLNELETPNINI 139
               Q+RCS  + E   V  + W                 + +R G           +++
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192

Query: 140 DG------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            G      G +++     +D G Y C +     +      + V    
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGL--- 143
            P++ +    ++ + C     E   V  + W  +  +    +       N+++  G    
Sbjct: 12  SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71

Query: 144 --------------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVV 189
                         L + +   AD G Y C ++     +  K  V +   P  P  ++V 
Sbjct: 72  RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR 131

Query: 190 E 190
            
Sbjct: 132 V 132

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 42  NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
           +G++ +  V   D GIY+C+             L V+         P   T
Sbjct: 200 DGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             G  + + C           W +DG  +    R +I     + +      DSG+Y+C 
Sbjct: 15 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQDSVPADSGLYACV 72

Query: 62 ATNVHGMDESKGRLIVLHGPS 82
           ++  G D +   + V     
Sbjct: 73 TSSPSGSDTTYFSVNVSDALP 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
                +     LQLRC    +     +  W  +GV++        E+    I G  +E+ 
Sbjct: 10  VESFLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLA-------ESNRTRITGEEVEVQ 59

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           ++  AD+G Y CV  S  G  +T  +V V    
Sbjct: 60  DSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 78.8 bits (193), Expect = 1e-15
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 9/217 (4%)

Query: 377 ESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED 436
           + +V         P   PQ +     +   I  +WNP   I   +  R   + +      
Sbjct: 273 DDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGR-ITGLVGPRNTEYTLFESISG 331

Query: 437 NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP 496
                              +        +   +   N  G+       +     +     
Sbjct: 332 KSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQ--AQSAVVINVTERVAPHD 389

Query: 497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTLD 555
           P+++ +K IN T V  +W    P    +  +  ++ + + +      N TI     +T  
Sbjct: 390 PTSLKVKDINSTVVTFSWY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYH 447

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQ 590
             +  L+P   Y  RV   S     + S  S      
Sbjct: 448 VAVDKLNPYTAYTFRVRCSSKTF-WKWSRWSDEKRHL 483

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 66.5 bits (161), Expect = 1e-11
 Identities = 42/312 (13%), Positives = 80/312 (25%), Gaps = 32/312 (10%)

Query: 71  SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 130
           S  + I     +     P    + A  N+ + C + T+               + +  + 
Sbjct: 193 SPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTK---------------VLSGQIG 237

Query: 131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 190
               P I++ G  + I   +   +      +          T V    PP +P  +    
Sbjct: 238 NTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297

Query: 191 VHKTSATIQWTDGAT---NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 247
                    W  G      G   T Y +    +  S  F          ++  T      
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF--------HRIEGLTNETYRL 349

Query: 248 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 307
              +      + F +   N LG    +  +   N         P+ +         ++ S
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLG---QAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFS 406

Query: 308 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 367
           W           N+  +I   K N  +                V +     YT Y  +V+
Sbjct: 407 WY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVR 464

Query: 368 AINDVGPGPESE 379
             +       S 
Sbjct: 465 CSSK-TFWKWSR 475

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 63.8 bits (154), Expect = 8e-11
 Identities = 34/278 (12%), Positives = 74/278 (26%), Gaps = 22/278 (7%)

Query: 207 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 266
           G  +T   +      +    N    +I        G+  A     +         +I   
Sbjct: 218 GSNMTICCMSPTKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT 272

Query: 267 ELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIF 326
           +                A  P   P ++      + ++  SW P  R          +  
Sbjct: 273 DDDVYGTV-------VFAGYPPDVPQKLSCETHDLKEIICSWNP-GRITGLVGPRNTEYT 324

Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
             +    +       E        + +        +   +   N +G    + V+ +   
Sbjct: 325 LFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT-- 382

Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
           E +    P  +  +  NST +  +W        N     +  +I+  K ++ +E     +
Sbjct: 383 ERVAPHDPTSLKVKDINSTVVTFSWYL----PGNFTKINLLCQIEICKANSKKEVRNATI 438

Query: 447 S--RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                +     +  L P T Y  +V   +       S 
Sbjct: 439 RGAEDSTYHVAVDKLNPYTAYTFRVRCSSK-TFWKWSR 475

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 33/285 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G N+TI C          +      +I   G+       N+ +S  S   + I   T  
Sbjct: 217 AGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS--GTNIIFITDD 274

Query: 64  NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 117
           +V+G     G         Y   +P K++   H   ++ CS             +  Y  
Sbjct: 275 DVYGTVVFAG---------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV--- 174
             +      +        N       L +      +   +    ++ +G+  +   +   
Sbjct: 326 FESISGKSAVFHRIEGLTNETYR---LGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT 382

Query: 175 -IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
             V      P  ++V +++ T  T  W       +     +I      +      +    
Sbjct: 383 ERVAPHD--PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATI-- 438

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                        +++  L P++ Y F+V   ++  + + S  S 
Sbjct: 439 ---RGAEDSTYHVAVDK-LNPYTAYTFRVRCSSK-TFWKWSRWSD 478

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 74.9 bits (183), Expect = 1e-15
 Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 44/198 (22%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           E G+V + C+   A      W KDG +IG     K        +   ++D  G+Y C  +
Sbjct: 17  EDGSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGS 69

Query: 64  NVHGM------------DESKGRLIVLHGPS---------------YYEQLPPKITIAAH 96
                            D  K                            Q P K++I+  
Sbjct: 70  QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129

Query: 97  RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAG 155
             + L C  +         +W HN   I      + +  NI  D   L +   S    +G
Sbjct: 130 T-VILTCPQYPGS----EILWQHNDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 180

Query: 156 EYECVVKSTVGKISTKTT 173
            Y C  + +  + +    
Sbjct: 181 YYVCYPRGSKPEDANFYL 198

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEHV 232
             P +      VE + ++A +Q+ +  AT G PI  YK   R      W+S W++  E  
Sbjct: 8   SSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63

Query: 233 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
           +   V         +I   L P +TY  ++ A N  G GE S+ S     P
Sbjct: 64  MEGIV---------TIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQP 104

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           +  D P  +PS             + ++  P      P + YK  WR   +  + S+   
Sbjct: 2   SHMDTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 58

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
                   +V I      T Y V++ A+N  G G  S     
Sbjct: 59  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 100

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEV-DQDMSRANDTIIPVGNT 553
            PS   ++    +T  V +    P      PI+ YK     V ++               
Sbjct: 9   SPSIDQVE-PYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65

Query: 554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
               IV L P   Y +R+ A +  G G +S+ 
Sbjct: 66  GIVTIVGLKPETTYAVRLAALNGKGLGEISAA 97

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 404 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRT--TRNWALIVGLQ 460
           S+   V ++  E       G  I  ++ ++         + +Y ++         IVGL+
Sbjct: 19  SSTAQVQFDEPE----ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 74

Query: 461 PDTKYYVKVMAYNNAGEGPESE 482
           P+T Y V++ A N  G G  S 
Sbjct: 75  PETTYAVRLAALNGKGLGEISA 96

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 177 EGPPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
            GPPG     ++          ++W       G PI+ Y +            V      
Sbjct: 6   SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV------ 59

Query: 235 KEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                Y G + E ++ + L+P  TY F++ A N++G+G  S        P   P
Sbjct: 60  -----YQGSEVECTVSS-LLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGP 107

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 487 RTYRKAPQKPPSAVHIKG-INPTTVHVTWRYVSPSFEEE-PIIGYKVRVWEVDQDMSRAN 544
            +    P  P     ++G      + + W    P  +   PI  Y V +  +++D     
Sbjct: 2   SSGSSGPPGPCLPPRLQGRPKAKEIQLRWG--PPLVDGGSPISCYSVEMSPIEKDEP--- 56

Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
              +  G+ ++  +  L PGK Y  R+ A +  G G  S  
Sbjct: 57  -REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEK 96

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 404 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
           +  I + W P         G  I  + ++    +  E   VY  S        +  L P 
Sbjct: 23  AKEIQLRWGP----PLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVE---CTVSSLLPG 75

Query: 463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
             Y  ++ A N  G GP SE   +     AP   PS+
Sbjct: 76  KTYSFRLRAANKMGFGPFSE---KCDITTAPGSGPSS 109

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 20/94 (21%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           + + W P P     +P   Y +        E +             V +           
Sbjct: 26  IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPR------------EVYQGSEVECTVSSL 72

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
                Y  +++A N +G GP SE   I +A    
Sbjct: 73  LPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 33/187 (17%), Positives = 51/187 (27%), Gaps = 38/187 (20%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------GGRRKIFENGNLLI 47
           Y    GNVT    P   P  + +WKK  + +                       +G+L I
Sbjct: 6   YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 48  SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 107
             ++  D   Y   + N+      K  L VL   S      P I      N  L C    
Sbjct: 65  YNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-----KPMIYWECS-NATLTCEV-- 114

Query: 108 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 167
            E  DV          + +                   ++         ++C   + V +
Sbjct: 115 LEGTDVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRVSQ 160

Query: 168 ISTKTTV 174
            S    V
Sbjct: 161 ESEMEVV 167

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 73.6 bits (180), Expect = 4e-15
 Identities = 22/193 (11%), Positives = 56/193 (29%), Gaps = 17/193 (8%)

Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG--------NVGIAV 350
           G +  ++  W       Q+      ++ + + +       ++            + G   
Sbjct: 13  GYLTKMTCRWSTSTI--QSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYE 70

Query: 351 VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINV 409
                 F  + Y + ++  + +G   +S    +     +  + P  V      N   + +
Sbjct: 71  CIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKI 129

Query: 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
           +W        N++      +I+Y       +  +Y +         +        Y V+V
Sbjct: 130 SWEKPVFPENNLQ-----FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQV 184

Query: 470 MAYNNAGEGPESE 482
                 G G  S 
Sbjct: 185 RCKRLDGLGYWSN 197

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 15/200 (7%)

Query: 398 FSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPE-----ETAVYYLSRTTR 451
            + G   T +   W+   +        +L  HR   +  D P      E    YL     
Sbjct: 10  ETDG-YLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGF 68

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI-NPTTV 510
              +   +   + Y + +   ++ G   +S              PPS+V  +   N   +
Sbjct: 69  YECIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDSVVKPLPPSSVKAEITINIGLL 127

Query: 511 HVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR 570
            ++W         E  + +++R     +++      +     +    +        Y ++
Sbjct: 128 KISW---EKPVFPENNLQFQIRYGLSGKEVQWKMYEVYD-AKSKSVSLPVPDLCAVYAVQ 183

Query: 571 VLAFSNGGDGRMS--SPAIT 588
           V      G G  S  S    
Sbjct: 184 VRCKRLDGLGYWSNWSNPAY 203

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)

Query: 194 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG----KEVDRYTGRKEASIE 249
           T  T +W+         +  ++  R + +S + +    +      K+    +      I 
Sbjct: 16  TKMTCRWSTSTIQSLAESTLQL--RYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73

Query: 250 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISW 308
             +   S Y   +   + L  G   SP       +      PS +       IG L ISW
Sbjct: 74  QPIFLLSGYTMWIRINHSL--GSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISW 131

Query: 309 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 368
           E     +    N+ ++I +      E Q +  + Y     +V  +P       Y V+V+ 
Sbjct: 132 EKPVFPEN---NLQFQIRYGLSGK-EVQWKMYEVYDAKSKSVS-LPVPDLCAVYAVQVRC 186

Query: 369 INDVGPGPESE 379
               G G  S 
Sbjct: 187 KRLDGLGYWSN 197

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           GG VT+ C   A P P+  W KDG  +          +  L++  +   D G YSC AT
Sbjct: 24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------SPVLILPEIGPQDQGTYSCVAT 77

Query: 64 NVHGMDESKGRLIV 77
          +     +    + +
Sbjct: 78 HSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 16/94 (17%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           P    +A    + L C    +    +   W  +GV +                  +L + 
Sbjct: 17  PEGGAVAPGGTVTLTCEVPAQPSPQI--HWMKDGVPLPLPP------------SPVLILP 62

Query: 148 NASFADAGEYECVVKSTVGKI--STKTTVIVEGP 179
                D G Y CV   +      S   ++ +  P
Sbjct: 63  EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 7e-15
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           EG  V   C  +  P P  +W      +    S GR  +F +G L +      D+G Y C
Sbjct: 399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLC 458

Query: 61  TATNVHGMDESKGRLIV 77
            A N  G D     L V
Sbjct: 459 IAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 80  GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
                ++   ++ +     +Q  C A  +    +  +W      + +   N   T   + 
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI--LWLSPRKHLVSAKSNGRLTVFPD- 440

Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
             G LE+  A   D G Y C+  +  G  S    + V
Sbjct: 441 --GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.8 bits (171), Expect = 8e-15
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S+ ++  V   P L   ++    H  SAT+ W     +  P   Y +         +  V
Sbjct: 2   SSGSSGPVPATPILQ--LEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV 59

Query: 229 SEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                      Y G++   +++  L   STY  +V A N+ G    S       +    P
Sbjct: 60  -----------YVGKETMCTVDG-LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
           + +  ++W               G+ ++    +  +   VY           + GL  ++
Sbjct: 24  NNSATLSWKQ----PPLSTVPADGYILELDDGNGGQFREVY---VGKETMCTVDGLHFNS 76

Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
            Y  +V A+N  G  P S+       + +    PS+
Sbjct: 77  TYNARVKAFNKTGVSPYSK---TLVLQTSEGSGPSS 109

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
            P  P   +     +  +  ++W+   P     P  GY + + + +    R     + VG
Sbjct: 9   VPATPILQLEECCTHNNSATLSWK--QPPLSTVPADGYILELDDGNGGQFRE----VYVG 62

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
                 +  L     Y+ RV AF+  G    S   
Sbjct: 63  KETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 97

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 21/94 (22%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
            ++SW+         P   Y +     N  +F+             V             
Sbjct: 27  ATLSWKQ--PPLSTVPADGYILELDDGNGGQFRE------------VYVGKETMCTVDGL 72

Query: 359 --YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
              + Y  +V+A N  G  P S+ + + ++E   
Sbjct: 73  HFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
            G  + +    +  P+P+ VW K G  +    R  +  +       +   +R DSG Y  
Sbjct: 38  VGEQLNLVVPFQGKPRPQVVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96

Query: 61  TATNVHGMDESKGRLIVL 78
           +    +  D +  R+ V+
Sbjct: 97  SVQIENMKDTATIRIRVV 114

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 24/108 (22%)

Query: 88  PPKITIAAH----------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
           PPKI +  H            L L      +    V  +WT  G          L+T  +
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV--VWTKGGA--------PLDTSRV 70

Query: 138 NI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
           ++       +  +  A+ +D+GEYE  V+    K +    + V    G
Sbjct: 71  HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 7   NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 59
              I       P P   W  +G  +       +          G LL +  +  ++G Y+
Sbjct: 22  EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 93
             A N  G          L  P   +++ P   I
Sbjct: 82  LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPI 115

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 17/106 (16%)

Query: 86  QLPPKIT----IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELET-P 135
             PP++             +          T         W HNG  +    +  +E   
Sbjct: 6   YYPPRVVSLEEPELRLEHCIEFVVRGNPPPT-------LHWLHNGQPLRESKIIHVEYYQ 58

Query: 136 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
              I  G L     +  + G Y  + K+ +G  +          P 
Sbjct: 59  EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 104

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 73.8 bits (180), Expect = 2e-14
 Identities = 48/310 (15%), Positives = 93/310 (30%), Gaps = 41/310 (13%)

Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
             +  +W P P    +  +++Y   +  K D +   ET +                    
Sbjct: 18  CTVIWTWNP-PEGASSNCSLWYFSHFGDKQDKKIAPETRRSI---------EVPLNERIC 67

Query: 362 YEVKVQAINDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
            +V  Q   +    P   V    S  E  P+ A   +     N + +  +W P       
Sbjct: 68  LQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLP-----GR 122

Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD-----TKYYVKVMAYNNA 475
                  + + YW     +      + R  + +     L         ++ V++M  +NA
Sbjct: 123 NTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNA 182

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G+   S   +  T R  P  PP   ++   +   ++V W   +P       + Y+V V  
Sbjct: 183 GKIKPSFNIVPLTSRVKP-DPPHIKNLS-FHNDDLYVQWE--NPQNFISRCLFYEVEVNN 238

Query: 536 VD----------QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA----FSNGGDGR 581
                       +      +    V NT    +  + P     +R+           D  
Sbjct: 239 SQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKL 298

Query: 582 MS--SPAITF 589
            S  S  ++ 
Sbjct: 299 WSNWSQEMSI 308

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 12/98 (12%), Positives = 22/98 (22%), Gaps = 9/98 (9%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
            Q P + + +   N  TV  TW            + Y     +                 
Sbjct: 3   TQPPVTNLSVSVENLCTVIWTWN-PPEGASSNCSLWYFSHFGDKQDKKI--------APE 53

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           T  +  V L+      +     +N  +           
Sbjct: 54  TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCIS 91

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
             G  + + C           W +DG  +    R +I     + +      DSG+Y+C 
Sbjct: 21 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIPADSGLYACV 78

Query: 62 ATNVHGMDESKGRLIV 77
           ++  G D +   + V
Sbjct: 79 TSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 81  PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
           P         + +     LQLRC    +     +  W  +GV++        E+    I 
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLV-------ESNRTRIT 58

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
           G  +E+ ++  AD+G Y CV  S  G  +T  +V V
Sbjct: 59  GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 33/237 (13%), Positives = 57/237 (24%), Gaps = 63/237 (26%)

Query: 1   YAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGS------------------------ 33
               GG V + C+ + A     P   W K  +   S                        
Sbjct: 13  EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 72

Query: 34  ------GGRRKIFENGN--LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLIVLHG 80
                  GR  +       L ++ V   D G Y C           G+D     L V   
Sbjct: 73  ESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132

Query: 81  ---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
               + +      + +    ++ + C        +V   W        N +    +    
Sbjct: 133 TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT--WYTGPTFFENYETGTYQPLAN 190

Query: 138 NI------------------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
                                   L I  A   DAG   C + +  G++    +  +
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 66.1 bits (160), Expect = 3e-12
 Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 24/102 (23%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------------------GRR 37
             EG ++T+ C           W        +                         GR 
Sbjct: 148 VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA 207

Query: 38  KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 79
                 NL+I      D+G   C      G  ++     +L 
Sbjct: 208 SFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 75.4 bits (184), Expect = 2e-14
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 25/222 (11%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-----LLISPVSRDDS 55
                     C   +      V    G       GR  +          ++I+ + ++D+
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302

Query: 56  GIYSCTATNVHGMDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
           G Y C A +   + E              S   + P  +   A  ++ + C  + +E   
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362

Query: 113 VAYIWTHNGVRIGNMDLNELET---------------PNINIDGGLLEITNASFADAGEY 157
           + Y W              +++                        + +   +  DAG Y
Sbjct: 363 IKY-WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFY 421

Query: 158 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 199
            C+        +T    I+EG P L     V  V   +  + 
Sbjct: 422 WCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP 463

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 37/193 (19%), Positives = 58/193 (30%), Gaps = 30/193 (15%)

Query: 2   AGEGGNVTIFCNPEAA--PKPKFVWKKDGNII------------GSGGRRKIFENG---- 43
              G  VTI C  +     K K ++K+ G                  GR ++   G    
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183

Query: 44  --NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ--------LPPKITI 93
             +++I+ +   D+G Y C A +    ++    L VL                    +  
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGP 243

Query: 94  AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 153
                 +  C   + E  DV  +    G R    +   L  P        + IT     D
Sbjct: 244 EVANVAKFLCRQSSGENCDV--VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301

Query: 154 AGEYECVVKSTVG 166
           AG Y C   S   
Sbjct: 302 AGRYLCGAHSDGQ 314

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 71.6 bits (174), Expect = 3e-13
 Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 34/226 (15%)

Query: 4   EGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSG---------------GRRKIFENGN-- 44
            G +V + C           +    +G   G                 GR  + E     
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404

Query: 45  ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 101
              ++++ ++  D+G Y C          +    I +       ++P  +T      L++
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE--IKIIEGEPNLKVPGNVTAVLGETLKV 462

Query: 102 RCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPNINIDGGL----LEITNASFADAG 155
            C    +      Y   W + G +             +N D       L +   + AD G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522

Query: 156 EYECVVKS-TVGKISTKTTVIV-EGPPGLPGGVQVVEVHKTSATIQ 199
            Y C VK       +    V V E        V + +    +A  +
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA--DAAPDE 566

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.8 bits (159), Expect = 2e-11
 Identities = 38/219 (17%), Positives = 64/219 (29%), Gaps = 35/219 (15%)

Query: 4   EGGNVTIFCNPEAA---PKPKFVWKKDGNIIG--------------SGGRRKIFENGN-- 44
           EG +V+I C           +  W + G   G                GR  +       
Sbjct: 14  EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73

Query: 45  ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 101
              + I+ +S+DDSG Y C          S    + +             T+   R + +
Sbjct: 74  TFVVNIAQLSQDDSGRYKCGLGINSR-GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132

Query: 102 RCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPN------INIDGG-----LLEITNA 149
            C   TE       ++   G+    + D +    PN      ++I G       + I   
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192

Query: 150 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 188
             +DAG+Y C              + V  P        +
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 15/96 (15%)

Query: 2   AGEGGNVTIFCNPEAA----PKPKFVWKKDGNII------GSGGRRKIFENGN----LLI 47
           A  G  + + C+         K    W   G         G        +  +    L +
Sbjct: 454 AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTL 513

Query: 48  SPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPS 82
           + V+R D G Y C     H   E+    + V    +
Sbjct: 514 NLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA 549

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P      +        +I ++W   E       G ++ + I+Y+++++ E  +  
Sbjct: 3   SGSSGPS-TVPIMHQVSATMRSITLSWPQPE----QPNGIILDYEIRYYEKEHNEFNSS- 56

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
            ++R+  N A I GL+P   Y V+V A   AG G  S +   +T        PS+
Sbjct: 57  -MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT---LTDSGPSS 107

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
               +H       ++ ++W    P      I+ Y++R +E + +   ++        T  
Sbjct: 10  TVPIMHQVSATMRSITLSWP--QPEQPNGIILDYEIRYYEKEHNEFNSSMA---RSQTNT 64

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           A I  L PG  Y ++V A +  G G+ S   + FQ
Sbjct: 65  ARIDGLRPGMVYVVQVRARTVAGYGKFSGK-MCFQ 98

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 10/100 (10%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              P     +  V     S T+ W         I  Y+I      ++ + +         
Sbjct: 5   SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM------- 57

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
               +    A I+  L P   Y  +V A    GYG+ S  
Sbjct: 58  --ARSQTNTARIDG-LRPGMVYVVQVRARTVAGYGKFSGK 94

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
           +++SW   P E+ N   + Y+I + +K   EF S   +       A +    P       
Sbjct: 24  ITLSWPQ-P-EQPNGIILDYEIRYYEKEHNEFNSSMAR--SQTNTARIDGLRP----GMV 75

Query: 362 YEVKVQAINDVGPGPESEVVTIFSAEDMP 390
           Y V+V+A    G G  S  +   +  D  
Sbjct: 76  YVVQVRARTVAGYGKFSGKMCFQTLTDSG 104

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
           EG + T  C    A      W  D   + +    +I         L +  ++  DSG   
Sbjct: 27  EGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIY 86

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPP 89
             A    G   +   L V   PS + +  P
Sbjct: 87  FEA----GDQRASAALRVTEKPSVFSRSGP 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 71  SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 130
           S    +V     +  +    + +    +   RC         V   W  +   +   +LN
Sbjct: 3   SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVH--WFLDKTPLHANELN 60

Query: 131 ELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           E++       GG   L +   +  D+G          G       + V   P
Sbjct: 61  EIDAQ----PGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 68.6 bits (168), Expect = 4e-14
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 370 NDVGPGPESEVVTIFSAEDMPQV-----APQGVFSRGFNSTAINVTWNPIELIRENIRGR 424
           +    GP ++ ++  + E           P  +  R    T+I V+W P E    N    
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVR-PLVTSIVVSWTPPE----NQNIV 56

Query: 425 LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERY 484
           + G+ I Y       +T    +    R +  I  L P + Y + + A+NN GEG     Y
Sbjct: 57  VRGYAIGYGIGSPHAQTIK--VDYKQRYY-TIENLDPSSHYVITLKAFNNVGEGIPL--Y 111

Query: 485 LERTYRKAPQKPPSA 499
                R     P S 
Sbjct: 112 ESAVTRPHTSGPSSG 126

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 473 NNAGEGPESERYLERTYRKAP--QKPPSAVHIKGINP--TTVHVTWRYVSPSFEEEPIIG 528
           ++   GP ++     T+       + P       + P  T++ V+W    P  +   + G
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWT--PPENQNIVVRG 59

Query: 529 YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           Y +              TI          I +L P   Y + + AF+N G+G     +  
Sbjct: 60  YAIGYGIGSPHA----QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 115

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 163 STVGKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 221
           +      T  + + E   P +P  + V     TS  + WT        +  Y I      
Sbjct: 10  TDWLSAETFESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAI------ 62

Query: 222 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 281
              +   S H    +VD     +  +IEN L P S Y   + A N +G G P   S    
Sbjct: 63  --GYGIGSPHAQTIKVDYKQ--RYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYESAVTR 117

Query: 282 TPADKP 287
                P
Sbjct: 118 PHTSGP 123

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 27/138 (19%)

Query: 265 GNELGYGEPSSPSPQYNTPADKPYQ-----APSRIGGGGGKIGDLS----ISWEPLPREK 315
           G+    G P++      T      +      PS +      +  L     +SW P P E 
Sbjct: 1   GSSGSSG-PATDWLSAETFESDLDETRVPEVPSSL-----HVRPLVTSIVVSWTP-P-EN 52

Query: 316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVG 373
           QN     Y I +   +      +T+K         +    P     + Y + ++A N+VG
Sbjct: 53  QNIVVRGYAIGYGIGSPHA---QTIKVDYKQRYYTIENLDP----SSHYVITLKAFNNVG 105

Query: 374 PG-PESEVVTIFSAEDMP 390
            G P  E          P
Sbjct: 106 EGIPLYESAVTRPHTSGP 123

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
            +  S +  P      +       T++++ W   E  + N  G ++ + IKY+++D   +
Sbjct: 2   SSGSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPE--QPN--GIILEYEIKYYEKDKEMQ 56

Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
           +  Y   +     A + GL+P T+Y  +V A  +AG G  S+     T    P  P S 
Sbjct: 57  S--YSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGPSSG 111

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
            + + AP      +  +    T+V + W+   P      I+ Y+++ +E D++M   +  
Sbjct: 5   SSGQAAPS-QVVVIRQERAGQTSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEMQSYSTL 61

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
                 T  A +  L PG RY  +V A ++ G GR  S A+  +
Sbjct: 62  ---KAVTTRATVSGLKPGTRYVFQVRARTSAGCGR-FSQAMEVE 101

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           +  P     ++     +TS ++ W +    NG  I  Y+I      +    + S      
Sbjct: 8   QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYS------ 59

Query: 236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                     A++   L P + Y F+V A    G G  S  
Sbjct: 60  --TLKAVTTRATVSG-LKPGTRYVFQVRARTSAGCGRFSQA 97

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           +    P      I         +S+ W+  P E+ N   + Y+I + +K+       TLK
Sbjct: 6   SGQAAP-SQVVVIRQERAGQTSVSLLWQE-P-EQPNGIILEYEIKYYEKDKEMQSYSTLK 62

Query: 342 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
                  A V    P     T Y  +V+A    G G  S+ + +
Sbjct: 63  --AVTTRATVSGLKP----GTRYVFQVRARTSAGCGRFSQAMEV 100

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 16/94 (17%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
           A EG   T+ C  E +      WKK    +  GGR  + ++G    L I  +S  D+G Y
Sbjct: 20  ASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEY 77

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
           SC      G + +   L V         LP + T
Sbjct: 78  SCMC----GQERTSATLTV-------RALPARFT 100

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)

Query: 117 WTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKT 172
           W      +        +    ++  DG    L+I + S ADAGEY C+     G+  T  
Sbjct: 40  WKKGPETLR-------DGGRYSLKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSA 88

Query: 173 TVIVEGPP 180
           T+ V   P
Sbjct: 89  TLTVRALP 96

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 68.0 bits (166), Expect = 6e-14
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFV-WKKDGNII--GSGGRRKIFENGN-------LLISPV 50
           +A  G    I C   + P P  + W    N++  G+ GR  +            L IS +
Sbjct: 24  HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83

Query: 51  SR-DDSGIYSCTATNVHGMDESKGRLIV 77
            R D   IY+CTA N  G D    RL  
Sbjct: 84  VRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 67  GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
           G   S G L V   P                  Q++C   +    D    W+     + +
Sbjct: 1   GSSGSSGTLTVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLES 57

Query: 127 MDLNELETPNINIDGGL---LEITNASFAD-AGEYECVVKSTVGKISTKTTVIVEGPP 180
                     I+ + G+   L I+N   AD    Y C   ++ G  +    +  +G  
Sbjct: 58  GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 11/127 (8%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S          +P   P  +  R   +  I ++W P      N    + G+ I Y
Sbjct: 1   GSSGSSGPENDLDESQVPD-QPSSLHVR-PQTNCIIMSWTPPL----NPNIVVRGYIIGY 54

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
                  ET      +       I  L+  + Y + + A+NNAGEG     Y   T R  
Sbjct: 55  GVGSPYAETVRVDSKQRY---YSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSI 109

Query: 493 PQKPPSA 499
              P S 
Sbjct: 110 TSGPSSG 116

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 12/111 (10%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              P  P  + V         + WT        +  Y I     +           +  +
Sbjct: 15  SQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYII----GYGVGSPYAETVRVDSK 69

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
              Y+      IE  L   S Y   + A N  G G P   S    +    P
Sbjct: 70  QRYYS------IER-LESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINP--TTVHVTWRYVSPSFEEEPIIGYKVRV 533
           G    S    +        + P       + P    + ++W    P      + GY +  
Sbjct: 1   GSSGSSGPENDLD----ESQVPDQPSSLHVRPQTNCIIMSWT--PPLNPNIVVRGYIIGY 54

Query: 534 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
                      +T+          I  L     Y + + AF+N G+G     + T
Sbjct: 55  GVGSPYA----ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS----ISWEPLPREKQNAPNIYYK 324
           G    S P       +  P   PS +      +   +    +SW P P    N     Y 
Sbjct: 1   GSSGSSGPE-NDLDESQVP-DQPSSL-----HVRPQTNCIIMSWTP-PLN-PNIVVRGYI 51

Query: 325 IFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPG-PESEVV 381
           I +   +      ET++         +          + Y + ++A N+ G G P  E  
Sbjct: 52  IGYGVGSPYA---ETVRVDSKQRYYSIERLES----SSHYVISLKAFNNAGEGVPLYESA 104

Query: 382 TIFSAEDMPQVA 393
           T  S    P   
Sbjct: 105 TTRSITSGPSSG 116

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 66.7 bits (163), Expect = 9e-14
 Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 11/109 (10%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
             ++   +         + +TW           G  + + +    +D             
Sbjct: 9   ESLSGLSLKLVKKEPRQLELTWAGSRP---RNPGGNLSYELHVLNQDEEWH------QMV 59

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
                L+  LQPDT Y V+V      G GP S  +  RT    P  P S
Sbjct: 60  LEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT--SPPSGPSS 106

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP--IIGYKVRVWEVDQDMSRANDTIIP 549
           A      ++ +    P  + +TW   + S    P   + Y++ V   D++  +       
Sbjct: 8   AESLSGLSLKLVKKEPRQLELTW---AGSRPRNPGGNLSYELHVLNQDEEWHQ------- 57

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           +       +  L P   Y +RV   +  G G   SP   F+
Sbjct: 58  MVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPF-SPDHEFR 97

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           L ++W           N+ Y++    +++   Q           +     P     T Y 
Sbjct: 26  LELTWAGSRPRNPG-GNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ----P----DTTYI 76

Query: 364 VKVQAINDVGPGPESEVVTI 383
           V+V+ +  +GPGP S     
Sbjct: 77  VRVRTLTPLGPGPFSPDHEF 96

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)

Query: 176 VEGPPGLPG-GVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVI 233
             G   L G  +++V+       + W             Y++                  
Sbjct: 5   SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ------------- 51

Query: 234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
            +E  +        +   L P +TY  +V     LG G P SP  ++ T   
Sbjct: 52  DEEWHQMVLEPRVLLTK-LQPDTTYIVRVRTLTPLGPG-PFSPDHEFRTSPP 101

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
          +GG V       A PK +  W K+G  I    +      G    L I+     D   Y  
Sbjct: 22 KGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYV 80

Query: 61 TATNVHGMDESKGRLIVLHGPS 82
          TA    G ++    L V  GPS
Sbjct: 81 TA----GDEKCSTELFVRSGPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 18/105 (17%)

Query: 80  GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
           G ++ + L P   +     ++            +   W  NG  I         +     
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADP---KLEVKWYKNGQEIR-------PSTKYIF 56

Query: 140 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
              G    L I N    D  EY        G     T + V   P
Sbjct: 57  EHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           G  + + C    +P P + W K+   +    ++        ++  V  +  G Y C   
Sbjct: 17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------YMVPYVDLEHQGTYWCHVY 70

Query: 64 NVHGMDESKGRLIVLHGPS 82
          N     +SK   I++   +
Sbjct: 71 NDRDSQDSKKVEIIIDELN 89

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 22/103 (21%)

Query: 88  PPKITI-------AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
             +I +            L L+C A    +    Y W  N + + +              
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------ 48

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGL 182
             L  +        G Y C V +      S K  +I++    L
Sbjct: 49  KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 34/191 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFV-WKKDGNII------------------GSGGRRKIFENGN 44
            G +VT+     A  K  F+ W  +   +                    G R    ++ +
Sbjct: 12  LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71

Query: 45  LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRC 103
           L +S +  +D+G Y    +       S   L +L      +     ++       L L C
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131

Query: 104 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 163
           S    +  +V++ W   G  +          PN+ +        +   +   +Y C+ ++
Sbjct: 132 SVEDAD-DNVSFRWEALGNTL-------SSQPNLTV------SWDPRISSEQDYTCIAEN 177

Query: 164 TVGKISTKTTV 174
            V  +S   + 
Sbjct: 178 AVSNLSFSVSA 188

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKD-GNIIGS---GGRRKIFENGNLLISPVSRDDSGIYS 59
           EG    + C     P     W    G ++       R  +  +G L  S V   D+G+Y+
Sbjct: 366 EGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYT 423

Query: 60  CTATNVHGMDESKGRLIV----LHGPSYY 84
           C  TNV G   +   L V     H   ++
Sbjct: 424 CMVTNVAGNSNASAYLNVSTAGTHHHHHH 452

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DGGL 143
             P  + I+  R  +L+C          +  W   NG  + +   +    P I++ + G 
Sbjct: 357 DAPRDLNISEGRMAELKCRTPPM----SSVKWLLPNGTVLSHASRH----PRISVLNDGT 408

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           L  ++   +D G Y C+V +  G  +    + V    
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           +    P+ + +    PT++ ++W   +     + +  Y++   E   D      T+   G
Sbjct: 6   SVSSVPTKLEVVDATPTSLKISWD--AYYSSWQNVKYYRITYGETGGDSPVQEFTV--PG 61

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
               A I  L PG  Y + V A+     G   +  I+  
Sbjct: 62  YYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
                  P  +       T++ ++W+       +    +  +RI Y +         + +
Sbjct: 4   GSSVSSVPTKLEVVDATPTSLKISWDAYY----SSWQNVKYYRITYGETGGDSPVQEFTV 59

Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
                  A I GL+P   Y + V AY+    G E    +   YR
Sbjct: 60  PGYYST-ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
              +P  ++VV+   TS  I W    ++ + + +Y+I        T+         +E  
Sbjct: 7   VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRI--------TYGETGGDSPVQEFT 58

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNT 282
                  A+I   L P   Y   V A +    G   +   S  Y T
Sbjct: 59  VPGYYSTATISG-LKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 361
           L ISW+            YY+I + +        E     G    A +    P      +
Sbjct: 24  LKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP-GYYSTATISGLKP----GVD 76

Query: 362 YEVKVQAINDVGPGPE-SEVVTI 383
           Y + V A +   PG E +  ++I
Sbjct: 77  YTITVYAYDTFFPGYEPNSPISI 99

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 385 SAEDMPQVAPQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA 442
           S    P  AP+ +           I   W P      +  G +  + ++Y +  +    +
Sbjct: 3   SGSSGPD-APRNLQLSLPREAEGVIVGHWAP----PIHTHGLIREYIVEYSRSGSKMWAS 57

Query: 443 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
                R   N+  I  L  +T Y V+V A  + G G  S+     T + +   P S 
Sbjct: 58  Q----RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG--PSSG 108

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)

Query: 177 EGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
              P  P  +Q+      +      W         I  Y +    + +  W +       
Sbjct: 5   SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQR----- 59

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                        I+N L+  + Y  +V A    G G  S  
Sbjct: 60  ------AASNFTEIKN-LLVNTLYTVRVAAVTSRGIGNWSDS 94

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 8/100 (8%)

Query: 487 RTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 545
            +    P  P +  + +       +   W    P      I  Y V        M  +  
Sbjct: 2   SSGSSGPDAPRNLQLSLPREAEGVIVGHWA--PPIHTHGLIREYIVEYSRSGSKMWASQR 59

Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
                  +   +I +L     Y +RV A ++ G G  S  
Sbjct: 60  A-----ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDS 94

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           + +  P  AP  +     +  +  I     P    +     Y + + +     + S+   
Sbjct: 3   SGSSGP-DAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAA 61

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
                      I +    T Y V+V A+   G G  S+  +I + +   
Sbjct: 62  S------NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGG 142
              I ++    L L C+A TE  + + + W +   +  +      DL       +     
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 143 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
            L I   + +D G Y C   S +      T V V   P
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 13/91 (14%)

Query: 4   EGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSG-----------GRRKIFENGNLLISPV 50
            G  + + C           F W+   +                G         L I  V
Sbjct: 22  VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81

Query: 51  SRDDSGIYSCTATNVHGMDESKGRLIVLHGP 81
           +R D G+Y+C A++     ++   + V   P
Sbjct: 82  TRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 16/90 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----------------GRRKIFENGNLLI 47
            GG+V + C    +P P+  W  +G                                + I
Sbjct: 35  VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94

Query: 48  SPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
             +  +D+G Y C A+N    +       V
Sbjct: 95  DTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 14/100 (14%)

Query: 88  PPKITIAAHRNLQLRCSA-----------HTEELLDVAYIWTHNGVRIGNMDLNELETPN 136
           P         +++L C A              +  +       +G R+  + ++     +
Sbjct: 28  PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87

Query: 137 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
                  + I      D G YEC   +   +        V
Sbjct: 88  AA---STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 42/189 (22%)

Query: 4   EGGNVTIFCNPEAAPKPKFV------------WKKDGNIIGSGGRRK-----IFENGNLL 46
            G NVT+          + +            +  +G         K        NG L 
Sbjct: 13  TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72

Query: 47  ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 105
           I  VS++D G Y     +    D+ K  + V      YE +  P I      N  L C  
Sbjct: 73  IYNVSKEDRGDYYMRMLH-ETEDQWKITMEV------YEMVSKPMIYWEC-SNATLTCEV 124

Query: 106 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 165
                 DV          + +                   ++         ++C   + V
Sbjct: 125 LEGT--DVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRV 168

Query: 166 GKISTKTTV 174
            + S    V
Sbjct: 169 SQESEMEVV 177

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 12/121 (9%)

Query: 169 STKTTVIVEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWF 226
                      PG+P    V  ++H  S  I W     NG   I  Y +      N   +
Sbjct: 7   GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKW 66

Query: 227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 286
            +      +E            +  L P   Y  +V   ++ G    S            
Sbjct: 67  EMIYSGATRE---------HLCDR-LNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116

Query: 287 P 287
           P
Sbjct: 117 P 117

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVW 534
           G    S      T    P  P        I+  +  +TW    P       I  Y V   
Sbjct: 1   GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWD--PPKDNGGATINKYVV--- 55

Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
           E+ +  +     +I  G T +     L+PG  Y +RV   S+GG   +S  
Sbjct: 56  EMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSES 106

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQG-VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK 431
           G    S VV   +  D P   P         +S +  +TW+P +   +N    +  + ++
Sbjct: 1   GSSGSSGVVEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPK---DNGGATINKYVVE 56

Query: 432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
             +  N  +  + Y   T     L   L P   Y ++V   ++ G+   SE  L +T   
Sbjct: 57  MAEGSNGNKWEMIYSGATRE--HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAV 114

Query: 492 APQKPPS 498
           +   P S
Sbjct: 115 SG--PSS 119

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 25/130 (19%)

Query: 273 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYYKIFWRKKN 331
            SS   ++ T  DKP   P +    G        I+W+P P++   A    Y +   + +
Sbjct: 4   GSSGVVEFTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEMAEGS 61

Query: 332 DTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVTIF 384
           +           GN    +    +  +          Y ++V  I+D G    SE + + 
Sbjct: 62  N-----------GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110

Query: 385 SAEDMPQVAP 394
                P V+ 
Sbjct: 111 ----TPAVSG 116

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 67.7 bits (165), Expect = 4e-13
 Identities = 31/194 (15%), Positives = 49/194 (25%), Gaps = 33/194 (17%)

Query: 2   AGEGGNVTIFCNPE---AAPKPKFVWKKDGN-----IIGS------------GGRRKIFE 41
           A  G  VT+          P+ +  W K G      +IG              G   I  
Sbjct: 3   AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62

Query: 42  NGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 98
           + N   L+++  +    G Y C           +  L V   P        +        
Sbjct: 63  SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDFSV 121

Query: 99  LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADA 154
           L + C+ +      V   W       G           +    DG L      +      
Sbjct: 122 LTVTCTVNAFPHPHV--QWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176

Query: 155 GEYECVVKSTVGKI 168
               CV K+   + 
Sbjct: 177 LPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLIS---PVSRD 53
              +   +T+ C   A P P   W     +  +     G     ++G+L ++    + + 
Sbjct: 115 QFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP 174

Query: 54  DSGIYSCTATNVHGMDES 71
                +C   N       
Sbjct: 175 WHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           +   L +T A+ +  G Y C +K    +++ +  + V  P 
Sbjct: 65  NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 105

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
             G          + P     WK  G  + +    +I E+G    L++       +G  
Sbjct: 17 VFVGETAHFEI-ELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75

Query: 59 SCTATNVHGMDESKGRLIV 77
          S  A N      S   L V
Sbjct: 76 SFQAANTK----SAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 15/70 (21%)

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGK 167
           DV   W   G  +         +P+  I  DG    L + N      GE           
Sbjct: 33  DVHGQWKLKGQPLA-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ----AAN 81

Query: 168 ISTKTTVIVE 177
             +   + V+
Sbjct: 82  TKSAANLKVK 91

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 67.4 bits (164), Expect = 5e-13
 Identities = 44/217 (20%), Positives = 73/217 (33%), Gaps = 17/217 (7%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           PPG P   +    +K + T  W  G   G P T+Y +       +      +++ G    
Sbjct: 3   PPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGG 296
            + G++  S+      W TY   V A N++G            Y    D P +    +  
Sbjct: 62  CHFGKQYTSM------WRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQ 115

Query: 297 GGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 354
              +   L I W P  L   K     + Y+I  + +   E++     +         +I 
Sbjct: 116 PEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTE-----FKIL 170

Query: 355 SEFYYTEYEVKVQAINDVGPGPE-SEVVTIFSAEDMP 390
           S     +Y V+V+   D G     S    I    D  
Sbjct: 171 SLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDFT 207

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 11/178 (6%)

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
             +  W P            Y + + ++ +T          G              +  Y
Sbjct: 19  TFTCWWRP---GTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTY 75

Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSR----GFNSTAINVTWNPIELIR 418
            + V A N +G    S+ + +     +    P  +             + + W+P  LI 
Sbjct: 76  IMMVNATNQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLID 134

Query: 419 ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
                  + + I+   E   E    +   +T      I+ L P  KY V+V    + G
Sbjct: 135 LKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFK---ILSLHPGQKYLVQVRCKPDHG 189

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 37/211 (17%), Positives = 59/211 (27%), Gaps = 12/211 (5%)

Query: 389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 448
           +P   P+    R  N       W P           L         E    E   Y    
Sbjct: 2   LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSL---TYHREGETLMHECPDYITGG 58

Query: 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR---KAPQKPPSAVHIKGI 505
                           Y + V A N  G     E Y++ TY      P +    V     
Sbjct: 59  PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPED 118

Query: 506 NPTTVHVTWRY--VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP 563
               + + W    +         + Y++R+             I   G   +  I+ L P
Sbjct: 119 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA----EWEIHFAGQQTEFKILSLHP 174

Query: 564 GKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
           G++Y ++V    + G     SPA   Q+  +
Sbjct: 175 GQKYLVQVRCKPDHGYWSAWSPATFIQIPSD 205

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           G  + + C  E +      W K+G  +    R K+ + G    L+I+    +D G Y  
Sbjct: 21 LGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVF 78

Query: 61 TATNVHGMDESKGRLIVLHGPS 82
                       ++ V+ GPS
Sbjct: 79 APDA--YNVTLPAKVHVISGPS 98

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)

Query: 88  PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
             KI       T+   + + L+C        ++   WT NG+ +        E+  + + 
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQ-------ESDRLKVV 55

Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
             G +  L I NA   D G+Y     +    ++    V V   P 
Sbjct: 56  QKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYS 59
           A  G  +TI C+ +     K         +            NG+L    V  +D G+Y+
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYT 317

Query: 60  CTATNVHGMDESKGRLIVLHGPS 82
           C A      +     L V +   
Sbjct: 318 CYAMGETFNETLSVELKVYNFTL 340

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 10/112 (8%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
                      L +RC    +    +  +W           L++    ++++  G L   
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQ---GMTKVWVSPS---NEQVLSQGSNGSVSVRNGDLFFK 306

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 199
                D G Y C         +    + V             +    +A   
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHH----DTLNAAADPW 354

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 64.5 bits (157), Expect = 7e-13
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE---ETAVYYLSRTTRNWALIVGL 459
             T + VTW       +     + G+R+ Y +    +             T   A++V L
Sbjct: 28  TPTTVQVTWTV-----DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82

Query: 460 QPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
           +    Y +KV  Y N  +G +SE    RT  ++   P S 
Sbjct: 83  KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG--PSSG 120

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 502 IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI--IPVGNTLDADIV 559
              + PTTV VTW         + I GY+V   +     + ++       V     A +V
Sbjct: 24  PVVLTPTTVQVTWTVDRQP---QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80

Query: 560 DLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
           +L  G  Y ++V  + N   G  S    T +  EE
Sbjct: 81  NLKKGVTYEIKVRPYFNEFQGMDSES-KTVRTTEE 114

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 358
           + ++W       Q      Y++ +R+ +  +  S              ++P+E       
Sbjct: 32  VQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNL-------DAKVPTERSAVLVN 81

Query: 359 ---YTEYEVKVQAINDVGPGPESEVVTIFSAED 388
                 YE+KV+   +   G +SE  T+ + E+
Sbjct: 82  LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEE 114

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYS 59
           EG    + C   +       W   +G ++  G    R  +  +G L  + V+  D+G+Y+
Sbjct: 355 EGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYT 413

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPK 90
           C  +N  G   +   L V             
Sbjct: 414 CMVSNSVGNTTASATLNVT-------GTHHH 437

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLL 144
           + P  + +      +L+C A T      +  W       G +  +      I +   G L
Sbjct: 346 EPPADLNVTEGMAAELKCRASTSL---TSVSWITPN---GTVMTHGAYKVRIAVLSDGTL 399

Query: 145 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
             TN +  D G Y C+V ++VG  +   T+ V G  
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 9/110 (8%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
                P    V         + W       + +  Y +  R   +  W  +   V G E 
Sbjct: 5   SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTE- 62

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                  E  +   L+    YEF+++A       +PS+ +    +    P
Sbjct: 63  ------TELLVPG-LIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGP 105

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           +   PP  +      P  V + W    P    + + GY +   +  Q     +  +   G
Sbjct: 6   SGLSPPRGLVAV-RTPRGVLLHW--DPPELVPKRLDGYVLEGRQGSQGWEVLDPAVA--G 60

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
              +  +  L     Y  R++AF+       S+ A
Sbjct: 61  TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 62.7 bits (152), Expect = 4e-12
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 7   NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----------FENGNLLISPVSRDDSG 56
           +  I  + +  P P   W  +G+++                    +G L ++  +  ++G
Sbjct: 17  HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76

Query: 57  IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 89
            Y+  A N  G   +      +  P  +    P
Sbjct: 77  NYTLLAANPFGQASASIMAAFMDNPFEFNPEDP 109

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 7/93 (7%)

Query: 117 WTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 172
           W  NG  +        E      N  +  G L +   +  + G Y  +  +  G+ S   
Sbjct: 34  WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93

Query: 173 TVIVEGPPGLP---GGVQVVEVHKTSATIQWTD 202
                  P        +            +  +
Sbjct: 94  MAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE 126

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           EG    + C  E +      W K    +  G R  + ++G    L I  +  +D+G Y C
Sbjct: 33  EGATAVLRC--ELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC 90

Query: 61  TATNVHGMDESKGRLIVLHGPS 82
                 G + +   L V   PS
Sbjct: 91  MC----GKERTSAMLTVRAMPS 108

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 19/121 (15%)

Query: 67  GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
               +   L V   P  + +              LRC             W      +  
Sbjct: 5   SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK----MAPVEWWKGHETL-- 58

Query: 127 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 182
                 +    ++  DG    L+I      DAGEY C+     GK  T   + V   P  
Sbjct: 59  -----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPSG 109

Query: 183 P 183
           P
Sbjct: 110 P 110

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
            GEG +   +C   A+  P   W KD   +    +     NGN   L I+ V  DD G Y
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553

Query: 59  SCTATNVHGMDESKGRLIV 77
           +  A N +G  E    L V
Sbjct: 554 TVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 173 TVIVEGPPGLPGGVQVVEVHKTSATIQWT----DGATNGRPITHYKIIARTNWNSTWFNV 228
            V     P  P    +  +   +  + W     DG   G  +T+Y I  R     +W   
Sbjct: 3   MVADVPEPEPPRFPIIENILDEAVILSWKPPALDG---GSLVTNYTIEKREAMGGSWSPC 59

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
           ++            R   +    L     YEF++IA N+ G  +P  P+     P D+  
Sbjct: 60  AK-----------SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108

Query: 289 QAPSR 293
           +    
Sbjct: 109 RRRGY 113

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
           PP    I+ I    V ++W+   P+ +    +  Y +   E          +  P   + 
Sbjct: 12  PPRFPIIENILDEAVILSWK--PPALDGGSLVTNYTIEKREAM------GGSWSPCAKSR 63

Query: 555 D--ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598
                I  L  GK+Y  R++A +  G  +   P     +  ++  +
Sbjct: 64  YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKR 109

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
          E G     C  E  P     W+K    + + G+ +  + G    L IS + + DS  Y+C
Sbjct: 22 EKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC 80

Query: 61 TATNVHGMDESKGRLIV 77
                G  +S+ +L+V
Sbjct: 81 DI----GQAQSRAQLLV 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 15/72 (20%)

Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
            W    + +         +       +G    L I+    AD+  Y C     +G+  ++
Sbjct: 40  TWRKGLLEL-------RASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSR 88

Query: 172 TTVIVEGPPGLP 183
             ++V+G    P
Sbjct: 89  AQLLVQGRRSGP 100

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 64.8 bits (157), Expect = 4e-12
 Identities = 26/189 (13%), Positives = 60/189 (31%), Gaps = 14/189 (7%)

Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI---AVVRIPSEFY 358
             L   WEP   E  + P  +    +R + D ++Q +T+ +           +   +   
Sbjct: 20  NSLVCQWEP-GPE-THLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLL 77

Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP-----QVAPQGVFSRGFNSTAINVTWNP 413
           Y    + VQA N +G     ++               Q    G          + ++W P
Sbjct: 78  YQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKP 137

Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473
                +          ++Y  +       + +   ++++   + GL     Y +++    
Sbjct: 138 ----WKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIR 193

Query: 474 NAGEGPESE 482
           ++  G  S 
Sbjct: 194 SSLPGFWSP 202

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 60.2 bits (145), Expect = 2e-10
 Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 12/206 (5%)

Query: 179 PPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           PP  P  +  ++ +   S   QW  G     P +      R+  +  +   +      + 
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG--EPSSPSPQYNTPADKPY--QAPSR 293
            +            L+ +      V A N LG          P      + P        
Sbjct: 64  RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIG 120

Query: 294 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 353
                 + G L +SW+P             ++ ++ +      + TL  +         +
Sbjct: 121 PDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGA--NWTLVFHLPSSKDQFEL 176

Query: 354 PSEFYYTEYEVKVQAINDVGPGPESE 379
                   Y ++++ I    PG  S 
Sbjct: 177 CGLHQAPVYTLQMRCIRSSLPGFWSP 202

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 14/216 (6%)

Query: 389 MPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
            P  +P  +       + ++   W P           L   R +   +   +        
Sbjct: 3   YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62

Query: 448 RTTRN-WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIK--- 503
           +   N       L       + V A N  G     +  L+       + PP    +    
Sbjct: 63  KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLE-PPMLQALDIGP 121

Query: 504 ---GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 560
                 P  + ++W+       E      ++R     +  +      +P  +    ++  
Sbjct: 122 DVVSHQPGCLWLSWKP--WKPSEYMEQECELRYQPQLKGANWTLVFHLP-SSKDQFELCG 178

Query: 561 LSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 594
           L     Y +++    +   G  S  SP +  +   +
Sbjct: 179 LHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK 214

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 8/99 (8%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
             L  G  VV        + W     +       ++  +       + +  H+       
Sbjct: 115 QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS---- 170

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
              + +  +   L     Y  ++        G  S  SP
Sbjct: 171 ---KDQFELCG-LHQAPVYTLQMRCIRSSLPGFWSPWSP 205

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 4  EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
          EG + +  C     +     +W   G  +GS  R +    G    L++   +  D+G   
Sbjct: 22 EGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVV 81

Query: 60 CTATNVHGMDESKGRLIV 77
           +   +     SK  LIV
Sbjct: 82 FSVRGL----TSKASLIV 95

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 91  ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 146
           + +    +    C   + E      +WT  G  +G        +        G    L +
Sbjct: 18  MEVLEGESCSFECVL-SHESASDPAMWTVGGKTVG-------SSSRFQATRQGRKYILVV 69

Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 185
             A+ +DAGE        V  +++K ++IV    G   G
Sbjct: 70  REAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSSG 104

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
          A  G + T+ C   A  + +  W KDG  + S  + ++   G    L++    + ++G Y
Sbjct: 23 AEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81

Query: 59 SCTATNVHGMDESKGRLIV 77
          SC A       +   RL V
Sbjct: 82 SCEAGG----QQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)

Query: 67  GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 126
           G   S G+++       + +    +   A  +  L C    +   +V   W  +G ++  
Sbjct: 1   GSSGSSGKVVFAKEQPAHRE----VQAEAGASATLSCEV-AQAQTEV--TWYKDGKKLS- 52

Query: 127 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
                  +  + +   G    L +  A  A+AGEY C      G       + V G
Sbjct: 53  ------SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVAG 98

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              PG    + +      +A +QW         +  Y++       +    +     GK+
Sbjct: 5   SSGPG-RPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID---FGKD 60

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
              +T      +   L   +TY F++ A N  G GE      +  TP D  
Sbjct: 61  DQHFT------VTG-LHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPEDLS 102

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 463
                + W+P     + + G L+G+R++Y + D      + +          + GL   T
Sbjct: 20  MNTALLQWHP----PKELPGELLGYRLQYCRADEARPNTIDFGKDDQH--FTVTGLHKGT 73

Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
            Y  ++ A N AG G E E+ + RT       P S
Sbjct: 74  TYIFRLAAKNRAGLGEEFEKEI-RTPEDLS-GPSS 106

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
           +    P +P   + I      T  + W    P      ++GY+++    D+       TI
Sbjct: 3   SGSSGPGRPT--MMISTTAMNTALLQWH--PPKELPGELLGYRLQYCRADEARPN---TI 55

Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
               +     +  L  G  Y  R+ A +  G G      I 
Sbjct: 56  DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR 96

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             + W P P+E      + Y++ + + ++    +    +          +      T Y 
Sbjct: 23  ALLQWHP-PKE-LPGELLGYRLQYCRADEARPNTIDFGKDDQH----FTVTGLHKGTTYI 76

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMP 390
            ++ A N  G G E E   I + ED+ 
Sbjct: 77  FRLAAKNRAGLGEEFE-KEIRTPEDLS 102

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 65.3 bits (158), Expect = 1e-11
 Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 16/204 (7%)

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY---GNVGIAVVRIPSEFYY 359
            L   WEP P    + P  +    ++ + + + Q +++ +           +       Y
Sbjct: 115 SLICQWEPGPE--THLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLY 172

Query: 360 TEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF------SRGFNSTAINVTWNP 413
               + VQA N +G    S  + +   + +    P          +    +  + ++W P
Sbjct: 173 QNMGIWVQAENALGTS-MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEP 231

Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 473
                +          +++  +      A+            + GL P T Y +++    
Sbjct: 232 ----WQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIR 287

Query: 474 NAGEGPESERYLERTYRKAPQKPP 497
               G  S+       R   +   
Sbjct: 288 WPLPGHWSDWSPSLELRTTERAAA 311

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 31/306 (10%), Positives = 79/306 (25%), Gaps = 31/306 (10%)

Query: 4   EGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDS 55
            G  +T  C          P+P+ +W+    +   G ++++ +      + +  ++   +
Sbjct: 14  LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA 73

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 115
              SC+    + +       +    P         +      +L  +     E  L  ++
Sbjct: 74  F-LSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSF 132

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGL---LEITNASFADAGEYECVVKSTVGKIS--- 169
                  R       +     +  DG     +   +             ++ +G      
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192

Query: 170 ---TKTTVIVEGPPGLPGGVQVVEVHK---TSATIQWTDGATNGRPITHYKIIARTNWNS 223
                  V+   PP L       E          + W             ++  +     
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGE 252

Query: 224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-- 281
             + +   +  + +       +  +   L+P + Y  ++        G  S  SP     
Sbjct: 253 ASWALVGPLPLEAL-------QYELCG-LLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304

Query: 282 TPADKP 287
           T     
Sbjct: 305 TTERAA 310

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 62.6 bits (151), Expect = 9e-11
 Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 11/201 (5%)

Query: 403 NSTAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
            ++++   W P           L         +               +        L  
Sbjct: 112 TTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLL 171

Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP-----PSAVHIKGINPTTVHVTWRY 516
                + V A N  G     +  L+       + P       +          + ++W  
Sbjct: 172 YQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWE- 230

Query: 517 VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN 576
                        ++R      + S A    +P+      ++  L P   Y +++     
Sbjct: 231 -PWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL-QYELCGLLPATAYTLQIRCIRW 288

Query: 577 GGDGRMS--SPAITFQMGEEK 595
              G  S  SP++  +  E  
Sbjct: 289 PLPGHWSDWSPSLELRTTERA 309

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 20/163 (12%)

Query: 4   EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYS 59
           +   VTI C  N  A    ++    +G++      +           I  ++   +G YS
Sbjct: 20  KEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 76

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           C         E    L ++    Y      + P   + +   +   C   T       ++
Sbjct: 77  CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA---TSMFL 133

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
               G        + ++            +   + A  G Y C
Sbjct: 134 LLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 169

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
           G  VT +C  +      F+  K+G            +     + PV+    G Y C  + 
Sbjct: 116 GEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 173

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +       T++ ++W+            +  +RI Y +         + +  ++  
Sbjct: 7   VPTKLEVVAATPTSLLISWDASS-------SSVSYYRITYGETGGNSPVQEFTVPGSSST 59

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 490
            A I GL P   Y + V AY +  +   S       YR
Sbjct: 60  -ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ + +    PT++ ++W     S     +  Y++   E   +      T+   G++  
Sbjct: 7   VPTKLEVVAATPTSLLISW---DAS--SSSVSYYRITYGETGGNSPVQEFTV--PGSSST 59

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           A I  LSPG  Y + V A+ +  D   S    +  
Sbjct: 60  ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
              +P  ++VV    TS  I W   A++   +++Y+I        T+     +   +E  
Sbjct: 4   VSSVPTKLEVVAATPTSLLISWD--ASSS-SVSYYRI--------TYGETGGNSPVQEFT 52

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                  A+I   L P   Y   V A         S  
Sbjct: 53  VPGSSSTATISG-LSPGVDYTITVYAYYSYYDLYYSYS 89

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
             G               K  W++ G+ I +  +  +   G    L +  V   D G Y
Sbjct: 20 VAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSY 78

Query: 59 SCTATNVHGMDESKGRLIV 77
          +  A    G  + K  L V
Sbjct: 79 AVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 18/101 (17%)

Query: 81  PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
            S + + P  + +AA                 V   W   G  I         +    + 
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETERA---GVKVRWQRGGSDIS-------ASNKYGLA 57

Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
            +G    L +     AD G Y  +     G    K  + V 
Sbjct: 58  TEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            GG+VT+ C+        F+  K+  I       +IF+  +  +SPV+   +G Y+C  +
Sbjct: 37  RGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQE-SFNMSPVTTAHAGNYTCRGS 94

Query: 64  NVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
           + H        S   +I++ G      L   P   + +   + L+C +         +  
Sbjct: 95  HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM---FEHFFL 151

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
              G+      L       ++       I     A AG Y C
Sbjct: 152 HKEGISKDPSRLVGQIHDGVS--KANFSIGPMMLALAGTYRC 191

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 32/167 (19%), Positives = 47/167 (28%), Gaps = 18/167 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
            G  V + C  +      F   K+G             +G    N  I P+    +G Y 
Sbjct: 132 SGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYR 190

Query: 60  CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 113
           C  +  H   +    S    IV+ GP     L   P   + A  ++ L CS+        
Sbjct: 191 CYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SSYD 247

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
            Y  +    R G      L            +         G Y C 
Sbjct: 248 MYHLS----REGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCF 290

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 16/124 (12%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP-----ITHYKIIARTNWNS 223
           S+        P   P    V +V   S  + W       R         + I        
Sbjct: 5   SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64

Query: 224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
           ++  +                   +E  L P + Y+F++   +  G  E S       T 
Sbjct: 65  SYGVIYTGY----------ATRHVVEG-LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR 113

Query: 284 ADKP 287
              P
Sbjct: 114 ESGP 117

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S +      + +P   P           +I + W+  +   +  R       +++
Sbjct: 1   GSSGSSGMEPH---KVVPLSKPHPPVVGKVTHHSIELYWDLEQ---KEKRQGPQEQWLRF 54

Query: 433 WKEDNPEETAVYY-LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
             E+   +   Y  +        ++ GL+P T Y  ++   + +GE   S      T   
Sbjct: 55  SIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT--T 112

Query: 492 APQKPPSA 499
               P S 
Sbjct: 113 RESGPSSG 120

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
            ++  P   P    +  +   ++ + W       + +      +R    ++D    +  +
Sbjct: 10  PHKVVPLSKPHPPVVGKVTHHSIELYWDL-EQKEKRQGPQEQWLRFSIEEEDPKMHSYGV 68

Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
           I  G      +  L P   Y  R+   S  G+    SP ++     E    SG
Sbjct: 69  IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE-YSPVVSVATTRESGPSSG 120

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIF 326
           G    S   P    P  KP   P       GK+   SI   W+   +EK+  P   +  F
Sbjct: 1   GSSGSSGMEPHKVVPLSKP-HPPV-----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRF 54

Query: 327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
             ++ D +  S  +   G     VV        T Y+ +++  +  G    S VV++ + 
Sbjct: 55  SIEEEDPKMHSYGVIYTGYATRHVVEGLEPR--TLYKFRLKVTSPSGEYEYSPVVSVATT 112

Query: 387 EDMP 390
            +  
Sbjct: 113 RESG 116

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
           A     V + C     P  +  W KDG  +       + +      L++  V  +DSG Y
Sbjct: 25  AVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEY 83

Query: 59  SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
            C   +    + +   + V        + P +I 
Sbjct: 84  LCEIDD----ESASFTVTV-------TEPPVRII 106

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 91  ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 146
           +       + L C        +V   WT +G  +        E+P + +  +  +  L +
Sbjct: 23  VAAVRLERVVLTCEL-CRPWAEV--RWTKDGEEVV-------ESPALLLQKEDTVRRLVL 72

Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
                 D+GEY C     +   S   TV V  PP
Sbjct: 73  PAVQLEDSGEYLCE----IDDESASFTVTVTEPP 102

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 35/305 (11%), Positives = 81/305 (26%), Gaps = 34/305 (11%)

Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 361
             + + W+P P ++Q   N+ Y++      + ++++   +           +        
Sbjct: 26  AQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESK--------AVTILHMGFS 77

Query: 362 YEVKVQAINDVGPGPESEV-VTIFSAEDMPQVAPQ-----------GVFSRGFNSTAINV 409
             V+    ND      S     + +    P  +                       +++ 
Sbjct: 78  ASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHC 137

Query: 410 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
           TW       E+ +  L      + +E           +         +  +      V V
Sbjct: 138 TWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLV 197

Query: 470 MAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGY 529
              +        ++            PP  V  + I  T + + W     S        Y
Sbjct: 198 NGSSKHSAIRPFDQLFALHAIDQI-NPPLNVTAE-IEGTRMSIQWEK-PVSAFPIHCFDY 254

Query: 530 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGGDGRMS--S 584
           +V++        +            +A I  +    +Y ++V   ++      G  S  S
Sbjct: 255 EVKIHNTRNGYLQI------EKLMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWS 308

Query: 585 PAITF 589
             I  
Sbjct: 309 QPIYV 313

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
           +G  + +     A    +  W K+G  I  SG +      G    L IS  S  D   Y 
Sbjct: 30  KGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQ 88

Query: 60  CTATNVHGMDESKGRLIV 77
           C        ++    L V
Sbjct: 89  CVVGG----EKCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 70  ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 129
                +      ++ ++L P   ++    ++L      +   +V   W  NG  I     
Sbjct: 5   HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEV--KWLKNGQEI----- 56

Query: 130 NELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
            ++          G    L I+  S AD   Y+CV    VG     T + V+
Sbjct: 57  -QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 59.6 bits (144), Expect = 6e-11
 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 12/141 (8%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWR-------YVSPSFEEEPIIG 528
           G    S     + +               I   TV +TW          +       + G
Sbjct: 1   GSSGSSGDEETKAFEALLS-NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59

Query: 529 YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           Y+V +    +D        + VG   +  + DL P   YH +V A  N   G  S     
Sbjct: 60  YEVLISSTGKD---GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA-EI 115

Query: 589 FQMGEEKEFKSGSPALYSAST 609
           F     +      P +   S+
Sbjct: 116 FTTLSCEPDIPNPPRISGPSS 136

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 54.6 bits (131), Expect = 4e-09
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 21/141 (14%)

Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---------DGATNGRPITHYKII 216
           G    + T   E            ++   +  + W+            ++   +  Y+++
Sbjct: 4   GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63

Query: 217 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
             +      +      +G+E          ++ + L P   Y  KV A      G PS  
Sbjct: 64  ISSTGKDGKY--KSVYVGEET-------NITLND-LKPAMDYHAKVQAEYNSIKGTPSEA 113

Query: 277 SPQYNTPADKP-YQAPSRIGG 296
              + T + +P    P RI G
Sbjct: 114 E-IFTTLSCEPDIPNPPRISG 133

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 4/128 (3%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S      + E +         +    +  + +TW+P   +            +  
Sbjct: 1   GSSGSSGDEETKAFEALLS-NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59

Query: 433 WK---EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
           ++       ++     +         +  L+P   Y+ KV A  N+ +G  SE  +  T 
Sbjct: 60  YEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTL 119

Query: 490 RKAPQKPP 497
              P  P 
Sbjct: 120 SCEPDIPN 127

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 58.5 bits (141), Expect = 7e-11
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 15/89 (16%)

Query: 4   EGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFENGN---------LLIS 48
            GG++T       A     P   W K   +      G   ++ ++ +         L I+
Sbjct: 18  VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIV 77
                 +G Y C  +     D S   L V
Sbjct: 78  DAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 140
           P    +    ++          LL    + W              ++ L++       + 
Sbjct: 11  PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
              L IT+A  A  G Y C V +      +   + V
Sbjct: 71  LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 61.0 bits (148), Expect = 9e-11
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 15/162 (9%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSC 60
             G+V I C     A   + +  K+      G R K +   +   +I  +  + +G Y C
Sbjct: 22  LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQC 81

Query: 61  TATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 117
                H        L ++    Y +        + +    N+ L C   +  +    +  
Sbjct: 82  QYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTC--SSAHIPFDRFSL 139

Query: 118 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
              G      +L+  +  +         +       +G Y C
Sbjct: 140 AKEG------ELSLPQHQSGE-HPANFSLGPVDLNVSGIYRC 174

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            G N+++ C+    P  +F   K+G +     +       N  + PV  + SGIY C   
Sbjct: 119 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEH-PANFSLGPVDLNVSGIYRCYGW 177

Query: 64  NVHG 67
               
Sbjct: 178 YNRS 181

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 14/163 (8%)

Query: 4   EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYS 59
            G +VTI C    EA    ++   K+G+      +  +         I  ++   +G Y 
Sbjct: 18  RGNSVTIRCQGTLEAQ---EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYR 74

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           C   +  G  E    L ++    Y +      P   + +  N+ L+C +         +I
Sbjct: 75  CYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLR---FDRFI 131

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
            T  G    +  L+   TP+      L  +   + +      C
Sbjct: 132 LTEEGDHKLSWTLDSQLTPS-GQFQALFPVGPVTPSHRWMLRC 173

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYS 59
           G NVT+ C        +F+  ++G+   S                  + PV+     +  
Sbjct: 114 GENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLR 172

Query: 60  CTATNVHG 67
           C  +  H 
Sbjct: 173 CYGSRRHI 180

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 9/110 (8%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
               P+ +     +  A  V W             +   R+ Y   +             
Sbjct: 7   GLAPPRHLGFSDVSHDAARVFWEGAP-------RPVRLVRVTYVSSEGGHSGQTEAPGNA 59

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
           T   A++  L   T Y V+V      G        +      +P   PS+
Sbjct: 60  TS--AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPSS 107

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           +   PP  +    ++     V W     +    P+   +V     +   S         G
Sbjct: 6   SGLAPPRHLGFSDVSHDAARVFW---EGA--PRPVRLVRVTYVSSEGGHSG---QTEAPG 57

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           N   A +  LS    Y +RV     GG     +  +T
Sbjct: 58  NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVT 94

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
               P  +   +V   +A + W       RP+   ++   ++               E  
Sbjct: 7   GLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQT-------EAP 56

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
                  A +   L   +TY  +V      G     +        A  P   PS
Sbjct: 57  G--NATSAMLGP-LSSSTTYTVRVTCLYPGGGSSTLTGRVT-TKKAPSPSSGPS 106

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 4  EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYS 59
                  C  E +  K    W K+G  +    R  I   G    L+I  V  +D G Y+
Sbjct: 22 AAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79

Query: 60 CTATNVHGMDESKGRLIVL 78
                        +L  L
Sbjct: 80 FVPDGYAL--SLSAKLNFL 96

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 21/99 (21%)

Query: 88  PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
             ++       T+ A      +C    E    V   W  NGV +         +  I I 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDE---KVTGKWYKNGVEVR-------PSKRITIS 57

Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVI 175
             G    L I +    D G+Y  V       +S K   +
Sbjct: 58  HVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PP  + +  I  TT  VTW    P     PI G  V     +        T+    +   
Sbjct: 4   PPFNIKVTNITLTTAVVTW---QPP--ILPIEGILVTFGRKNDPSDET--TVDLTSSITS 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             + +L P   Y +R++A +        S   T
Sbjct: 57  LTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFT 89

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +       T   VTW P           + G  + + ++++P +     L+ +   
Sbjct: 4   PPFNIKVTNITLTTAVVTWQPPI-------LPIEGILVTFGRKNDPSDETTVDLTSSIT- 55

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +  L+P+T Y ++++A N     P   
Sbjct: 56  SLTLTNLEPNTTYEIRIVARNGQQYSPPVS 85

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++V  +  T+A + W        PI    +      + +     +  +   +   T 
Sbjct: 5   PFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPSDETTVD--LTSSITSLT- 58

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                + N L P +TYE +++A N   Y  P S +
Sbjct: 59  -----LTN-LEPNTTYEIRIVARNGQQYSPPVSTT 87

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 24/194 (12%), Positives = 45/194 (23%), Gaps = 24/194 (12%)

Query: 4   EGGNVTIFC---NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
            G N+T+ C             V  +    +               +          +SC
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159

Query: 61  TATNVHGMDESKG--------RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 112
                      +         +L     P+   QL     +       + CS      + 
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219

Query: 113 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVGKIS 169
            A +    G        ++   P +             + +  D G         +G  S
Sbjct: 220 EAQVHLALG--------DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS 271

Query: 170 TKT--TVIVEGPPG 181
            +T  TV +   P 
Sbjct: 272 QETLQTVTIYSFPA 285

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 15/94 (15%)

Query: 4   EGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFENGN---------LLIS 48
            G ++T     +A     KP   W K   +     +G   ++ E            + I 
Sbjct: 21  VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 80

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 82
               + +G Y C  T     D     L V     
Sbjct: 81  KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 7/107 (6%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 140
           P   T+    ++        E+LL    I W              ++ L E    +  + 
Sbjct: 14  PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 187
              ++I  A    AG Y C V       S    + V    G    + 
Sbjct: 74  TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCT 61
            G +VTI+C        ++   K+ +      +  +         I  ++ D +G Y C 
Sbjct: 18  WGNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76

Query: 62  ATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 118
             +  G  +    L ++   +Y +      P   + + +++ L C + +       ++  
Sbjct: 77  YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP---MDTFLLC 133

Query: 119 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
                   + L                ++  +    G Y C
Sbjct: 134 KERAAHPLLCLR--SEHGAQQHQAEFPMSPVTSVHGGTYRC 172

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
            G +VT+ C   + P   F+  K+         R             +SPV+    G Y 
Sbjct: 113 SGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171

Query: 60  CTATNVH 66
           C +++  
Sbjct: 172 CFSSHGF 178

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
              +P  ++VV    TS  I W    ++   + +Y+I       ++   V E  +     
Sbjct: 4   VSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSP--VQEFTVPYSSS 60

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
             T      I   L P   Y   V A  E   G     SP
Sbjct: 61  TAT------ISG-LSPGVDYTITVYAWGEDSAGYMFMYSP 93

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +       T++ ++W+            +  +RI Y +         + +  ++  
Sbjct: 7   VPTKLEVVAATPTSLLISWDA-----PMSSSSVYYYRITYGETGGNSPVQEFTVPYSSST 61

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
            A I GL P   Y + V A+     G    
Sbjct: 62  -ATISGLSPGVDYTITVYAWGEDSAGYMFM 90

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ + +    PT++ ++W           +  Y++   E   +      T+    ++  
Sbjct: 7   VPTKLEVVAATPTSLLISW---DAPMSSSSVYYYRITYGETGGNSPVQEFTV--PYSSST 61

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDG-RMSSPAITFQ 590
           A I  LSPG  Y + V A+     G       I+  
Sbjct: 62  ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 8/79 (10%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
                V + C   +       W KDG  +       +  +G    L++      DSG +
Sbjct: 22 FTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80

Query: 59 SCTATNVHGMDESKGRLIV 77
           C          +   + V
Sbjct: 81 ECRTEG----VSAFFGVTV 95

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 91  ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 146
           +T      + L C        D    W  +G ++        E+  + +  DG    L +
Sbjct: 20  LTFTTSERVVLTCELSRV---DFPATWYKDGQKV-------EESELLVVKMDGRKHRLIL 69

Query: 147 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 185
             A   D+GE+EC        +S    V V+ P G   G
Sbjct: 70  PEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPSSG 104

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +  +    T   +TW P           + G  + Y  +D P +     L+     
Sbjct: 5   APSQIEVKDVTDTTALITWMPP-------SQPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 497
              I  L+PDT+Y V +++         ++     T   A  +  
Sbjct: 58  -YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF-TTGLAAALEHH 100

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            PS + +K +  TT  +TW    P    +P+ G+++     D    R   TI    +   
Sbjct: 5   APSQIEVKDVTDTTALITW---MPP--SQPVDGFELTYGIKDVPGDRT--TIDLTEDENQ 57

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             I +L P   Y + +++         +    T
Sbjct: 58  YSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 90

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++V +V  T+A I W     +  P+  +++                     +D    
Sbjct: 6   PSQIEVKDVTDTTALITWM--PPSQ-PVDGFELTYGIKDVPGDR--------TTIDLTED 54

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
             + SI N L P + YE  +I+        P+  +  + T     
Sbjct: 55  ENQYSIGN-LKPDTEYEVSLISRRGDMSSNPAKET--FTTGLAAA 96

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 59.9 bits (144), Expect = 3e-10
 Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 7/188 (3%)

Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
           + W P          + Y + +      ++ +++     N     +   +  Y  +Y  +
Sbjct: 26  LQWTPPE--GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYAR 83

Query: 366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN---IR 422
           V+AI        +E    +   +     P+   +    S ++ +T             + 
Sbjct: 84  VRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVS 143

Query: 423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPE 480
            + I   +KY       ++   +    T +  ++  L+P+T Y V V ++          
Sbjct: 144 MQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQP 203

Query: 481 SERYLERT 488
           SE+   RT
Sbjct: 204 SEKQCART 211

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 49.5 bits (117), Expect = 7e-07
 Identities = 29/225 (12%), Positives = 56/225 (24%), Gaps = 27/225 (12%)

Query: 176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 235
           V G    P  +  + ++     +QWT           Y +         W N SE     
Sbjct: 5   VSGGLPKPANITFLSIN-MKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC---- 59

Query: 236 EVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 294
              R   R    +          Y  +V A          + S ++    +     P   
Sbjct: 60  ---RNINRTYCDLSAETSDYEHQYYARVRAIWGTKCS-KWAESGRFYPFLETQIGPPEVA 115

Query: 295 GGGGGKIGDLSISWEPLPREKQNA---------PNIYYKIFWRKKNDTEFQSETLKEYGN 345
                K   + ++     +               N+ Y +           S+ +  +  
Sbjct: 116 LTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH-- 173

Query: 346 VGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTIFSAED 388
                + +      T Y V V++           SE     + +D
Sbjct: 174 ----TLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD 214

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 25/201 (12%)

Query: 393 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
            P  +   S    +    + W P E     ++G  + + ++Y+     +           
Sbjct: 11  KPANITFLSINMKNV---LQWTPPE----GLQGVKVTYTVQYFIYGQKKWLNKSECRNIN 63

Query: 451 RNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS--------AV 500
           R +  +       + +YY +V A         +E      + +    PP         ++
Sbjct: 64  RTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSI 123

Query: 501 HIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV 559
            +    P         +  S ++    + Y V V     +          V N     + 
Sbjct: 124 SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSN----RTWSQCVTNH-TLVLT 178

Query: 560 DLSPGKRYHMRVLAFSNGGDG 580
            L P   Y + V +F  G   
Sbjct: 179 WLEPNTLYCVHVESFVPGPPR 199

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 20/163 (12%)

Query: 4   EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYS 59
           +   VTI C  N  A    ++    +G++      +           I  ++   +G YS
Sbjct: 17  KEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYS 73

Query: 60  CTATNVHGMDE-SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYI 116
           C         E S    +V+        L   P   + +   +   C   T       ++
Sbjct: 74  CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA---TSMFL 130

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
               G        + ++            +   + A  G Y C
Sbjct: 131 LLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 166

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 64
           G  VT +C  + A    F+  K+G            +     + PV+    G Y C  + 
Sbjct: 113 GEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 170

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 59.0 bits (142), Expect = 4e-10
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 16/187 (8%)

Query: 306 ISWEPLPREKQNAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 364
           + WE     K        Y  +   ++     + T               S   Y ++ +
Sbjct: 19  LQWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTLT----------ECDFSSLSKYGDHTL 68

Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRG 423
           +V+A          +    FS  D   + P G+      +   +      IE   E    
Sbjct: 69  RVRAEFADEHSDWVQ--ITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTM 126

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPES 481
           + + +   Y  +   + T   +      ++ ++  L+P T Y V+V  +       G  S
Sbjct: 127 KNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWS 186

Query: 482 ERYLERT 488
           E   E+T
Sbjct: 187 EPVCEQT 193

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 38/218 (17%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  V++  V+     +QW   A     +T +     +               ++    T 
Sbjct: 5   PENVRMNSVN-FKNILQWESPAFAKGQLT-FTAQYLSYRI-----------FQDKCMQTT 51

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 302
             E    + L  +  +  +V A       E S       +P D     P  +        
Sbjct: 52  LTECDFSS-LSKYGDHTLRVRAEFA---DEHSDWVQITFSPVDDTIIGPPGMQVEVLA-D 106

Query: 303 DLSISWEPLPREKQNAPNI----------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVR 352
            L + +   P+ +                Y   +W++  D +FQ     ++         
Sbjct: 107 CLHMRFLA-PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDF-------EV 158

Query: 353 IPSEFYYTEYEVKVQAINDV--GPGPESEVVTIFSAED 388
           + +   +T Y V+V+         G  SE V   +  D
Sbjct: 159 LRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD 196

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 58.6 bits (141), Expect = 5e-10
 Identities = 23/185 (12%), Positives = 50/185 (27%), Gaps = 13/185 (7%)

Query: 306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 365
           + W+P      N  +  Y + ++     +++++            +   +      Y  +
Sbjct: 25  LQWQPGRALTGN--SSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGR 82

Query: 366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL 425
           V+A +       S         +     P    ++   S  + +    +    +  +   
Sbjct: 83  VRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVS 142

Query: 426 IGH------RIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GE 477
           I        R+        +E  VY           I  L P + Y V    Y       
Sbjct: 143 IEDYYELLYRVFIINNSLEKEQKVY---EGAHRAVEIEALTPHSSYCVVAEIYQPMLDRR 199

Query: 478 GPESE 482
              SE
Sbjct: 200 SQRSE 204

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 23/200 (11%)

Query: 393 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 450
            PQ V   SR F++    + W P       + G    + ++Y      +         T 
Sbjct: 10  KPQRVQFQSRNFHNI---LQWQPGR----ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQ 62

Query: 451 RNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 508
                +          YY +V A +       S       + +    PP     +     
Sbjct: 63  ELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL 122

Query: 509 TVHVTW--------RYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 560
            V +          +  + S E+   + Y+V +     +     +  +  G     +I  
Sbjct: 123 LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLE----KEQKVYEGAHRAVEIEA 178

Query: 561 LSPGKRYHMRVLAFSNGGDG 580
           L+P   Y +    +    D 
Sbjct: 179 LTPHSSYCVVAEIYQPMLDR 198

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 35/223 (15%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
                 P  VQ    +     +QW  G       + Y +  +      W N  +      
Sbjct: 5   THESLKPQRVQFQSRN-FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCW---- 59

Query: 237 VDRYTGRKEASIENV-LVPWSTYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPS 292
               T      + +        Y  +V A   G+   +      +P + T  D P    +
Sbjct: 60  ---GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116

Query: 293 RIGGGGGKIGDLSISWEPLPREKQNAP----------NIYYKIFWRKKNDTEFQSETLKE 342
           ++       G L +         +              + Y++F    N  E + +  + 
Sbjct: 117 QVN------GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKVYEG 169

Query: 343 YGNVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 383
                   V I +   ++ Y V  +    +       SE   +
Sbjct: 170 AHR----AVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCV 208

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 59.4 bits (143), Expect = 5e-10
 Identities = 30/243 (12%), Positives = 62/243 (25%), Gaps = 17/243 (6%)

Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIR 418
                +      D              +  +  +    V    FN   +N TW       
Sbjct: 6   LNTTILTPNGNEDTTAD-FFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSE-- 62

Query: 419 ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
                  + +  K    D  ++ + Y  S    +   +   +        V   +     
Sbjct: 63  PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPR 122

Query: 479 PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 538
            ++ + L+      P   P  + +  ++ + + + W     +      + + V+      
Sbjct: 123 RQATQMLKLQNLVIP-WAPENLTLHKLSESQLELNWNNRFLNH----CLEHLVQYRTDWD 177

Query: 539 DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGGDGRMS--SPAITFQMGE 593
                  T   V       +  +   KRY  RV        G     S  S  I +    
Sbjct: 178 HSW----TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNT 233

Query: 594 EKE 596
            KE
Sbjct: 234 SKE 236

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           G +V + C    A  P   W KD   I    +  +   G    L+I   S  D+G Y+C
Sbjct: 22 PGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTC 80

Query: 61 TATNVHGMDESKGRLIV 77
                   +S   L V
Sbjct: 81 EVEA----SKSTASLHV 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 25/107 (23%)

Query: 88  PPKIT-------IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 139
           P  I        +A   +++LRC   +     V   W  +   I        ++   ++ 
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPV--HWLKDRKAI-------RKSQKYDVV 57

Query: 140 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
            +G +  L I  AS  DAGEY C V+++     +  ++ VE     P
Sbjct: 58  CEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGP 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 4  EGGNVTIFCNPEAA-PKPKFVWKKDGNII----GSGGRRKIFENGN---LLISPVSRDDS 55
           G  V +    E +    + +W K+G  +        R +  ++G    L+ S V ++D 
Sbjct: 22 VGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDR 79

Query: 56 GIYSCTATNVHGMDESKGRLIV 77
          G Y           + +  LIV
Sbjct: 80 GRYQVITNG----GQCEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 17/104 (16%)

Query: 85  EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
              P  I        +     +++      E       +W  NGV +   D  +      
Sbjct: 5   SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE---GAQVMWMKNGVELTREDSFKARY-RF 60

Query: 138 NIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
             DG    L  ++    D G Y+ +          +  +IVE  
Sbjct: 61  KKDGKRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 12/125 (9%)

Query: 464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE 523
            ++     Y +  +  E+       ++ +    P+ + +    PT++ ++W         
Sbjct: 4   HHHHHSSDYKDDDDKGENL-----YFQGSVSDVPTKLEVVAATPTSLLISW---DAP--A 53

Query: 524 EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 583
             +  Y++   E   +      T+   G+   A I  L PG  Y + V A +        
Sbjct: 54  VTVRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111

Query: 584 SPAIT 588
           S  I+
Sbjct: 112 SKPIS 116

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 13/130 (10%)

Query: 361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN 420
            +        D     E+        +      P  +       T++ ++W+        
Sbjct: 4   HHHHHSSDYKDDDDKGEN-----LYFQGSVSDVPTKLEVVAATPTSLLISWDAPA----- 53

Query: 421 IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
               +  +RI Y +         + +  +    A I GL+P   Y + V A         
Sbjct: 54  --VTVRYYRITYGETGGNSPVQEFTVPGSKST-ATISGLKPGVDYTITVYAVTGLRLMLA 110

Query: 481 SERYLERTYR 490
             + +   YR
Sbjct: 111 GSKPISINYR 120

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 12/109 (11%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
             +          +P  ++VV    TS  I W   A     + +Y+I       ++   V
Sbjct: 18  KGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSP--V 72

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            E  +       T      I   L P   Y   V A   L      S  
Sbjct: 73  QEFTVPGSKSTAT------ISG-LKPGVDYTITVYAVTGLRLMLAGSKP 114

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)

Query: 2   AGEGGNVTIFC----NPEAAPKP-KFVWKKDGNIIGS---------------GGRRKIFE 41
              G N+TI C      +         W+ +   I                   R ++ +
Sbjct: 13  VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72

Query: 42  ------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 95
                 N  L I+ V   D+G+Y C  +   G D  +  + V   P         +    
Sbjct: 73  DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPV 130

Query: 96  HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFA 152
               +L C A      +V  IWT +      +   +  T N   +  L  +T     +  
Sbjct: 131 TSEHELTCQAEGYPKAEV--IWTSSD---HQVLSGKTTTTNSKREEKLFNVTSTLRINTT 185

Query: 153 DAGEYECVVKSTVGKISTKTTVIVEGPP 180
               + C  +    + +    +++   P
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPELP 213

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLIS-----PVSRDDSGI 57
                 + C  E  PK + +W   D  ++         +    L +      ++   + I
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189

Query: 58  YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
           + CT   +   +     L++   P      P + T
Sbjct: 190 FYCTFRRLDPEENHTAELVIPELPL--AHPPNERT 222

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 35/178 (19%)

Query: 88  PPK-ITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRI-----GNMDLNE------- 131
           P     +    N+ + C        +L  +   W      I     G  DL         
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66

Query: 132 ---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 188
              L    +++    L+IT+    DAG Y C++ S  G    + TV V  P        +
Sbjct: 67  RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRIL 125

Query: 189 VEVHKTS-------------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 233
           V    TS             A + WT   ++ + ++       +      FNV+  + 
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTS--SDHQVLSGKTTTTNSKREEKLFNVTSTLR 181

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN---LLISPVSRDDSGIY 58
           G  V + C   +       W K+G  I  G   R +I   G    L+I   ++ D+  Y
Sbjct: 21 CGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEY 79

Query: 59 SCTATNVHGMDESKGRLIV 77
          S   T      +S  +L V
Sbjct: 80 SVMTTG----GQSSAKLSV 94

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 117 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 174
           W  NG  I     +      I ++G    L I  A+ ADA EY  +         +   +
Sbjct: 40  WFKNGEEIIPGPKSRYR---IRVEGKKHILIIEGATKADAAEYSVM----TTGGQSSAKL 92

Query: 175 IVEGPPGLPGG 185
            V+   G   G
Sbjct: 93  SVDLKSGPSSG 103

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 58
            EGG  T+ C   +   P   W    N++  G +  + + G    L++  +   DSG Y
Sbjct: 20 VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78

Query: 59 SCTATNVHGMDESKGRLIVLHGPS 82
          SC+     G   +   L V   PS
Sbjct: 79 SCSF----GDQTTSATLTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 15/72 (20%)

Query: 116 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 171
            W +    +             ++  +G +  L + N    D+G Y C      G  +T 
Sbjct: 40  KWCYGNNVL-------RPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTS 88

Query: 172 TTVIVEGPPGLP 183
            T+ V   P  P
Sbjct: 89  ATLTVTALPSGP 100

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
            PP +    ++      + T+ W     +   I+ Y++          F    + +   +
Sbjct: 17  NPPSIR--EELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQANFISLYNSVDSWM 72

Query: 238 DRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 292
                ++   ++   L   + Y F V A N+ G         +  T +      PS
Sbjct: 73  IVPNIKQNHYTVHG-LQSGTRYIFIVKAINQAGSRNSEPTRLK--TNSQPFKSGPS 125

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 374 PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNP----------IELIRENIRG 423
            G   E +   +A + P +  +   +   +   I V W            ++      + 
Sbjct: 3   SGSSGEGLDYLTAPNPPSIREELCTA---SHDTITVHWISDDEFSISSYELQYTIFTGQA 59

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
                    +        +   +    +N   + GLQ  T+Y   V A N AG    SE 
Sbjct: 60  N--------FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEP 110

Query: 484 YLERTYRKAPQKPPSA 499
              +T  +  +  PS+
Sbjct: 111 TRLKTNSQPFKSGPSS 126

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 14/118 (11%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV---- 531
           G    S   L   Y  AP  P     +   +  T+ V W           I  Y++    
Sbjct: 1   GSSGSSGEGL--DYLTAPNPPSIREELCTASHDTITVHWISDDEF----SISSYELQYTI 54

Query: 532 ---RVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
              +   +    S  +  I+P        +  L  G RY   V A +  G    S P 
Sbjct: 55  FTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPT 111

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 17/187 (9%)

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE--TLKEYGNVGIAVVRIPSEFY-- 358
           DL   WE             Y   ++ +++                      +P+     
Sbjct: 36  DLVCFWEE--AASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSS 93

Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELI 417
           +   E++V A +    G       I   E +   AP G+       S  + + W P    
Sbjct: 94  FVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPP--- 146

Query: 418 RENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV--MAYNNA 475
            E      I + +               +    R   ++  L+  T+Y   V       +
Sbjct: 147 PETPMTSHIRYEVDVSAGQGAGSVQRVEIL-EGRTECVLSNLRGRTRYTFAVRARMAEPS 205

Query: 476 GEGPESE 482
             G  SE
Sbjct: 206 FGGFWSE 212

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 24/230 (10%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRI 430
            P P  +      A  +    P+ +  F+       +   W        +       +  
Sbjct: 3   FPPPNPDPKFESKAALLAARGPEELLCFTERLED--LVCFWEE----AASAGVGPGQYSF 56

Query: 431 KYWKEDNPEETA----VYYLSRTTRNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERY 484
            Y  ED P +              R W  +            ++V A + A       R 
Sbjct: 57  SYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPR---YHRV 113

Query: 485 LERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN 544
           +          P   V         V + W    P       I Y+V V       + + 
Sbjct: 114 IHINEVVLLDAPVGLVARLADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQG--AGSV 170

Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS----SPAITFQ 590
             +  +    +  + +L    RY   V A              S  ++  
Sbjct: 171 QRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLL 220

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 17/218 (7%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII-ARTNWNSTWFNVSEHVIGKEV 237
               P  +             W + A+ G     Y       +       + +    +  
Sbjct: 20  AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 297
            R+      +       +   E +V A +    G P      +             +   
Sbjct: 80  VRFWCSLPTA---DTSSFVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARL 132

Query: 298 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 357
             + G + + W P P E     +I Y++                  G        + +  
Sbjct: 133 ADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT---ECVLSNLR 188

Query: 358 YYTEYEVKVQAINDVGP-----GPESEVVTIFSAEDMP 390
             T Y   V+A              SE V++ +  D+ 
Sbjct: 189 GRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDLD 226

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  +    ++  ++ + W           +  Y+V     +  +        P G    
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQG-----QVSRYRVTYSSPEDGIHEL--FPAPDGEEDT 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           A++  L PG  Y + V+A  +  +   S P I 
Sbjct: 57  AELQGLRPGSEYTVSVVALHDDME---SQPLIG 86

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+G+     +  +I + W   +       G++  +R+ Y   ++               
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQ-------GQVSRYRVTYSSPEDGIHELFPAPDGEEDT 56

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479
            A + GL+P ++Y V V+A ++  E  
Sbjct: 57  -AELQGLRPGSEYTVSVVALHDDMESQ 82

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P G+   +V   S  I W   +  G  ++ Y++   +  +             E D    
Sbjct: 5   PKGLAFTDVDVDSIKIAWE--SPQG-QVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAE- 58

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
                ++  L P S Y   V+A ++    +P  
Sbjct: 59  -----LQG-LRPGSEYTVSVVALHDDMESQPLI 85

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 9/93 (9%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  +  K + P T  +TW             GY +               I+  G    
Sbjct: 10  APRDLEAKEVTPRTALLTWTEPPV-----RPAGYLLSFHTPGGQTQ----EILLPGGITS 60

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             ++ L P   Y+ R+ A          S + T
Sbjct: 61  HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 93

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP+ + ++        +TW            R  G+ + +       +  +     T+  
Sbjct: 10  APRDLEAKEVTPRTALLTWTEP-------PVRPAGYLLSFHTPGGQTQEILLPGGITS-- 60

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              ++GL P T Y  ++ A       P   
Sbjct: 61  -HQLLGLFPSTSYNARLQAMWGQSLLPPVS 89

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++  EV   +A + WT+          Y +   T    T     E ++   +  +  
Sbjct: 11  PRDLEAKEVTPRTALLTWTEPPV---RPAGYLLSFHTPGGQTQ----EILLPGGITSHQ- 62

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                +   L P ++Y  ++ A        P S S
Sbjct: 63  -----LLG-LFPSTSYNARLQAMWGQSLLPPVSTS 91

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 18/167 (10%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
            ++ +W+     +    N+    +++  ++ + Q  +   +     +  ++  +  +   
Sbjct: 14  YMNCTWQS--SSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQ 71

Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIR 422
              VQ  +   P  ++  +       +P  AP+ +     + + + + WN          
Sbjct: 72  TFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNN------RFL 124

Query: 423 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
              + H ++Y  + +   T     S   R+   +  +    +Y  +V
Sbjct: 125 NHCLEHLVQYRTDWDHSWTEQ---SVDYRHKFSLPSVDGQKRYTFRV 168

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 16/200 (8%)

Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
           FN   +N TW              + +  K    D  ++ + Y  S    +   +   + 
Sbjct: 10  FNVEYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEI 67

Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF 521
                  V   +      ++ + L+      P   P  + +  ++ + + + W     + 
Sbjct: 68  HLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLTLHKLSESQLELNWNNRFLNH 126

Query: 522 EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGG 578
                + + V+             T   V       +  +   KRY  RV        G 
Sbjct: 127 ----CLEHLVQYRTDWDHSW----TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 178

Query: 579 DGRMS--SPAITFQMGEEKE 596
               S  S  I +     KE
Sbjct: 179 AQHWSEWSHPIHWGSNTSKE 198

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 21/187 (11%), Positives = 51/187 (27%), Gaps = 16/187 (8%)

Query: 306 ISWEPLPREKQNAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYE 363
           + W P+    +    ++ Y+  + +   T                   +  +      Y 
Sbjct: 24  LMWSPVIAPGETVYYSVEYQGEY-ESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYN 82

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
           ++V+A         S +           +   G+     +   + +    +        G
Sbjct: 83  LRVRATLGSQTSAWSILKH-PFNRQSTILTRPGMEITK-DGFHLVIELEDL--------G 132

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPES 481
                 + YW+ +   E  V  + R+      +  ++P   Y VK   +  A       S
Sbjct: 133 PQFEFLVAYWRREPGAEEHVKMV-RSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFS 191

Query: 482 ERYLERT 488
           +      
Sbjct: 192 QTECVEV 198

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 18/208 (8%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  + V+  +     + W+     G    +Y +  +  + S +   S   I       T 
Sbjct: 10  PQQLSVLSTN-MKHLLMWSPVIAPG-ETVYYSVEYQGEYESLY--TSHIWIPSSWCSLTE 65

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 302
             E  + + +     Y  +V A         S     +N  +    +    I   G  + 
Sbjct: 66  GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL- 124

Query: 303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 362
              I  E L          +   +WR++   E   + ++  G      V + +      Y
Sbjct: 125 --VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSGGI----PVHLETMEPGAAY 173

Query: 363 EVKVQAINDV--GPGPESEVVTIFSAED 388
            VK Q            S+   +    +
Sbjct: 174 CVKAQTFVKAIGRYSAFSQTECVEVQGE 201

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 22/194 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA-----VYYLS 447
           APQ +     N   + + W+P+    E +      + ++Y  E     T+       + S
Sbjct: 9   APQQLSVLSTNMKHL-LMWSPVIAPGETV-----YYSVEYQGEYESLYTSHIWIPSSWCS 62

Query: 448 RTTRNW-ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 506
            T      +   +     Y ++V A   +     S        +      P       I 
Sbjct: 63  LTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPG----MEIT 118

Query: 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 566
               H+            P   + V  W   ++        +     +   +  + PG  
Sbjct: 119 KDGFHLVIELEDL----GPQFEFLVAYWR--REPGAEEHVKMVRSGGIPVHLETMEPGAA 172

Query: 567 YHMRVLAFSNGGDG 580
           Y ++   F      
Sbjct: 173 YCVKAQTFVKAIGR 186

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 12/99 (12%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
                 P  + +      S  + WT     G  + HY +                 +   
Sbjct: 5   SSGRSPPSNLALASETPDSLQVSWT--PPLG-RVLHYWLTYAPASGLGP--EKSVSVPGA 59

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
               T      + + L   + Y   V A    G  E  S
Sbjct: 60  RSHVT------LPD-LQAATKYRVLVSAIYAAGRSEAVS 91

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +        ++ V+W P         GR++ + + Y             +     +
Sbjct: 10  PPSNLALASETPDSLQVSWTPPL-------GRVLHYWLTYAPASGLGPEKSVSVPGARSH 62

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
              +  LQ  TKY V V A   AG           T + A    PS+
Sbjct: 63  -VTLPDLQAATKYRVLVSAIYAAGRSEAV----SATGQTACPSGPSS 104

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           + + PPS + +    P ++ V+W   +P      ++ Y +                +P G
Sbjct: 6   SGRSPPSNLALASETPDSLQVSW---TPP--LGRVLHYWLTYAPASGL-GPEKSVSVP-G 58

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
                 + DL    +Y + V A    G     S
Sbjct: 59  ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVS 91

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 21/159 (13%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
               VT+ C         +  +K  +        +  +   L I  + R  +G Y C+  
Sbjct: 21  LEKPVTLRCQGPP-GVDLYRLEKLSS-------SRYQDQAVLFIPAMKRSLAGRYRCSYQ 72

Query: 64  NVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 120
           N         +L ++    + +      P   +++  ++ L+C           +     
Sbjct: 73  NGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG---FDQFALYKE 129

Query: 121 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
           G      D    + P          I   + A +G Y C
Sbjct: 130 G------DPAPYKNPE-RWYRASFPIITVTAAHSGTYRC 161

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
            GG+VT+ C        +F   K+G+        + +   +  I  V+   SG Y C + 
Sbjct: 107 SGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYR-ASFPIITVTAAHSGTYRCYSF 164

Query: 64  NVHG 67
           +   
Sbjct: 165 SSRD 168

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +       T+I V+W P           + G+RI Y   + P E     +  ++ +
Sbjct: 4   APTDLQVTNVTDTSITVSWTPP-------SATITGYRITYTPSNGPGEPKELTVPPSSTS 56

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              I GL P  +Y V V A  +  E P   
Sbjct: 57  -VTITGLTPGVEYVVSVYALKDNQESPPLV 85

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  +QV  V  TS T+ WT    +   IT Y+I    +         E  +       T 
Sbjct: 5   PTDLQVTNVTDTSITVSWT--PPSA-TITGYRITYTPSNGPGE--PKELTVPPSSTSVT- 58

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                I   L P   Y   V A  +     P   +
Sbjct: 59  -----ITG-LTPGVEYVVSVYALKDNQESPPLVGT 87

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ + +  +  T++ V+W   +P      I GY++     +       +  +P  ++  
Sbjct: 4   APTDLQVTNVTDTSITVSW---TPP--SATITGYRITYTPSNGP-GEPKELTVP-PSSTS 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             I  L+PG  Y + V A  +  +        T
Sbjct: 57  VTITGLTPGVEYVVSVYALKDNQESPPLVGTQT 89

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 14/87 (16%)

Query: 5   GGNVTIFCNPEAAPKP--KFVWKKDGNII-----------GSGGRRKIFENGNLLISPVS 51
           G +V+  C+  ++      F W  D   +            + G   +     L +  V 
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 52  RDDSGIYSCTATNVHGMDESKG-RLIV 77
               G Y C  +N  G   S    L +
Sbjct: 85  FTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 49.7 bits (118), Expect = 9e-08
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----ELETPNINIDGG 142
           P   +     ++   CSA +     + + W  +   + + ++        +   +     
Sbjct: 17  PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTT 76

Query: 143 LLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 176
           +L + N  F   G Y+CV+ +  G   S    + +
Sbjct: 77  ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 22/168 (13%)

Query: 4   EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGI 57
               V + C  +        F+  ++G    +        +G    N  I P+ +D +G 
Sbjct: 20  SEETVILQCWSDVRFQ---HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGT 76

Query: 58  YSCTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELL 111
           Y C  +  H   +    S    IV+ G      L   P  T+ A  ++ L CS+ +    
Sbjct: 77  YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS--- 133

Query: 112 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
              Y  +  G                       +         G Y C
Sbjct: 134 YDMYHLSREGEAHERRFSA----GPKVNGTFQADFPLGPATHGGTYRC 177

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 12/113 (10%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
            G +VT+ C+  +     +   ++G             NG    +  + P +    G Y 
Sbjct: 120 AGESVTLSCSSRS-SYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYR 176

Query: 60  CTATNVHGMDESKGR-----LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 107
           C  +      E         + V   PS     P + +        L  +A  
Sbjct: 177 CFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQ 229

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 51
           EGG   + C  +        W            +K   +             ++ +S VS
Sbjct: 20  EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIVLHGP 81
             D G Y+C+      +  SK  L VL  P
Sbjct: 80  LSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 78  LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN- 136
           + G      L   +T+       L C     +   +   W++   +    D  +    N 
Sbjct: 3   VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNR 60

Query: 137 ---INIDGG--LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
              +        + +++ S +D G+Y C +  T+   ++K  + V G P
Sbjct: 61  IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 10/110 (9%)

Query: 385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           S    P   P+ +         +++TW P              + ++        E    
Sbjct: 3   SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAGAT--------HYLVRCSPASPKGEEEER 54

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ 494
            +    R   L+ GL+P   Y V V +        E+     RT    P 
Sbjct: 55  EVQ-VGRPEVLLDGLEPGRDYEVSVQSLRGPEGS-EARGIRARTPTSGPS 102

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
            P  PP A+ +  + P TVH+TW+             Y VR            +  + VG
Sbjct: 7   GPLPPPRALTLAAVTPRTVHLTWQ------PSAGATHYLVRCSPASPK-GEEEEREVQVG 59

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
              +  +  L PG+ Y + V +           
Sbjct: 60  RP-EVLLDGLEPGRDYEVSVQSLRGPEGSEARG 91

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 19/119 (15%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S+ ++     P   P  + +  V   +  + W          THY +             
Sbjct: 2   SSGSSG----PLPPPRALTLAAVTPRTVHLTWQ----PSAGATHYLV--------RCSPA 45

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           S     +E +   GR E  ++  L P   YE  V +       E      +  TP   P
Sbjct: 46  SPKGEEEEREVQVGRPEVLLDG-LEPGRDYEVSVQSLRGPEGSEARGIRAR--TPTSGP 101

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 53.0 bits (126), Expect = 4e-08
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%)

Query: 2   AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
              G +  + C    A       W+     +G+           L +   S   +G   C
Sbjct: 19  VALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTVRNASLSAAGTRVC 76

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 106
             +      +   +L+V   P    QL          + ++ C+AH
Sbjct: 77  VGSCGGRTFQHTVQLLVYAFP---NQLTVSPAALVPGDPEVACTAH 119

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 9/93 (9%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ +    +      + W    P   + P+  Y ++V                 G+ +D
Sbjct: 10  GPTQLRALNLTEGFAVLHW---KPP--QNPVDTYDIQVTAPGAP----PLQAETPGSAVD 60

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             + DL     Y   V           +S   T
Sbjct: 61  YPLHDLVLHTNYTATVRGLRGPNLTSPASITFT 93

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 15/118 (12%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  + +         + W P        +  +  + I+      P   A    S     
Sbjct: 10  GPTQLRALNLTEGFAVLHWKPP-------QNPVDTYDIQVTAPGAPPLQAETPGSAVD-- 60

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTV 510
              +  L   T Y   V           +             + P  +  K + P+  
Sbjct: 61  -YPLHDLVLHTNYTATVRGLRGPNLTSPAS-----ITFTTGLEAPRDLEAKEVTPSGP 112

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
            P  P  ++ + + +  A + W        P+  Y I              +        
Sbjct: 7   GPDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPGAPPL----QAETPGSAV 59

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
            Y       + + LV  + Y   V          P+S +  + T  + P
Sbjct: 60  DYP------LHD-LVLHTNYTATVRGLRGPNLTSPASIT--FTTGLEAP 99

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)

Query: 4   EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYS 59
           +G  VT+ C    E     ++   ++        R   ++ + G   I  ++ + +G Y 
Sbjct: 18  QGSPVTLRCQGGQETQ---EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74

Query: 60  CTATNVHGM--DESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAY 115
           C   +      + S    +V+ G      L   P   + +  N+ L+C +         +
Sbjct: 75  CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA---FDGF 131

Query: 116 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 160
           I    G       LN            +  +   S +    Y C 
Sbjct: 132 ILCKEGEDEHPQCLNSQPHAR-GSSRAIFSVGPVSPSRRWWYRCY 175

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIY 58
            GGNVT+ C+        F+  K+G                       + PVS      Y
Sbjct: 114 SGGNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWY 172

Query: 59  SCTATNVH 66
            C A + +
Sbjct: 173 RCYAYDSN 180

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 49.9 bits (119), Expect = 8e-08
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+ +       T++ ++W+          G    +RI Y +         + +      
Sbjct: 6   VPRDLEVVAATPTSLLISWDSGR-------GSYQYYRITYGETGGNSPVQEFTVPGPVHT 58

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
            A I GL+P   Y + V A  +     +       +
Sbjct: 59  -ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  + +    PT++ ++W              Y++   E   + S   +  +P G    
Sbjct: 6   VPRDLEVVAATPTSLLISW---DSG--RGSYQYYRITYGETGGN-SPVQEFTVP-GPVHT 58

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
           A I  L PG  Y + V A ++           
Sbjct: 59  ATISGLKPGVDYTITVYAVTDHKPHADGPHTY 90

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 27/119 (22%), Positives = 37/119 (31%), Gaps = 19/119 (15%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           G   +P  ++VV    TS  I W  G        +Y+I       ++   V E  +   V
Sbjct: 2   GVSDVPRDLEVVAATPTSLLISWDSGRG---SYQYYRITYGETGGNSP--VQEFTVPGPV 56

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ-------YNTPADKPYQ 289
              T      I   L P   Y   V A  +         +         Y T  DKP Q
Sbjct: 57  HTAT------ISG-LKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 10/200 (5%)

Query: 172 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 231
              +     G P   +     + + +  WTD   +G        +            ++ 
Sbjct: 22  NPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY--TRRNTQEWTQE 79

Query: 232 VIGKEVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
                     G        +       Y  K+ +       +  S               
Sbjct: 80  WKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNW 139

Query: 291 PSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 348
                   G   D+ + WE       ++    + Y++ +++ N+T++     K    +  
Sbjct: 140 TLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-----KMMDPILT 194

Query: 349 AVVRIPSEFYYTEYEVKVQA 368
             V + S     EYEV+V++
Sbjct: 195 TSVPVYSLKVDKEYEVRVRS 214

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 15/176 (8%)

Query: 302 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--EYGNVGIAVVRIPSEF-- 357
              S  W               ++F+ ++N  E+  E  +  +Y + G       S F  
Sbjct: 44  ETFSCHWTD-EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTS 102

Query: 358 YYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGV----FSRGFNSTAINVTWNP 413
               Y +K+ +        + +  ++                   S       I V W  
Sbjct: 103 IAIPYCIKLTSNGGTV---DEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEA 159

Query: 414 IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 469
                      ++ + ++Y + +  +   +  +  T+     +  L+ D +Y V+V
Sbjct: 160 PRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVP---VYSLKVDKEYEVRV 212

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 15/231 (6%)

Query: 372 VGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL-IGHRI 430
           +   P S        +      P+    R       +  W           G + + +  
Sbjct: 11  LSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTR 70

Query: 431 KYWKEDNPEETAVYYLSRTTRNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
           +  +E   E            N              Y +K+ +     +  +     E  
Sbjct: 71  RNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVD-EKCFSVDEIV 129

Query: 489 YRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP----IIGYKVRVWEVDQDMSRAN 544
               P      +    +      +  R+ +P   +      ++ Y+++  EV++      
Sbjct: 130 QPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET----K 185

Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGE 593
             ++    T    +  L   K Y +RV +      G     S  +   + +
Sbjct: 186 WKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLPQ 235

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP+ +        ++ ++W   +              I+Y + +   E     +  + R+
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAPD-------AAFDSFMIQYQESEKVGEAINLTVPGSERS 56

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              + GL+P T+Y V +             
Sbjct: 57  -YDLTGLKPGTEYTVSIYGVKGGHRSNPLS 85

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  + +  +   ++ ++W              + ++  E ++     N T+   G+   
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAPD-----AAFDSFMIQYQESEKVGEAINLTV--PGSERS 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
            D+  L PG  Y + +     G      S
Sbjct: 57  YDLTGLKPGTEYTVSIYGVKGGHRSNPLS 85

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 12/93 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  + V EV + S  + WT  A +      + I  + +            +      Y  
Sbjct: 5   PKNLVVSEVTEDSLRLSWT--APDA-AFDSFMIQYQESEKVGE--AINLTVPGSERSYD- 58

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
                +   L P + Y   +          P S
Sbjct: 59  -----LTG-LKPGTEYTVSIYGVKGGHRSNPLS 85

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 13/91 (14%)

Query: 4   EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKI-----------FENGNLLISPVS 51
           EG  +T+ C           W    G  I       +               ++ +  V+
Sbjct: 15  EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIVLHGPS 82
             D G+Y C   +   +   + ++IVL    
Sbjct: 75  LQDEGVYKCLHYS-DSVSTKEVKVIVLATMK 104

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----D 140
                IT+   + L L+C     +   + ++ T +G  I   +   L+     +     +
Sbjct: 6   NHTETITVEEGQTLTLKCVTSLRKNSSLQWL-TPSGFTIFLNEYPVLKNSKYQLLHHSAN 64

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 200
              + + N +  D G Y+C+   +    + +  VIV                        
Sbjct: 65  QLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEF---------------- 107

Query: 201 TDGATNGRPITHY 213
               ++ RP+ H+
Sbjct: 108 CRYPSHWRPLEHH 120

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 59
               V + C  +      F+  ++G    +        +G    N  IS +++D +G Y 
Sbjct: 21  SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79

Query: 60  CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 113
           C  +  H   +    S    IV+ G      L   P  T+ A  N+ L CS+ +      
Sbjct: 80  CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS---YD 136

Query: 114 AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYEC 159
            Y  +  G      + +E   P      G    +         G Y C
Sbjct: 137 MYHLSREG------EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
               VA     +    +++  V+W             + G R++Y   +  +E     L 
Sbjct: 4   GSHLVATSESVT-EITASSFVVSWVSAS-------DTVSGFRVEYELSEEGDEPQYLDLP 55

Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
            T      I  L P  KY V V   +  GE        + T
Sbjct: 56  STA-TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
             ++  +  I  ++  V+W  VS S   + + G++V     ++        +     +  
Sbjct: 8   VATSESVTEITASSFVVSW--VSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATS-- 60

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
            +I DL PG++Y + V   S  G+    S  ++
Sbjct: 61  VNIPDLLPGRKYIVNVYQISEDGE---QSLILS 90

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKE 236
           G   +     V E+  +S  + W   +     ++ +++    +             +   
Sbjct: 4   GSHLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEP---QYLDLPST 57

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 279
                      I + L+P   Y   V   +E G       + Q
Sbjct: 58  ATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLILSTSQ 93

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 48.6 bits (115), Expect = 5e-07
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 51
            GG V + C  +        W          G ++   +             ++ IS V+
Sbjct: 52  AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVA 111

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
             D G Y+C+      +  +K  + VL  P       P I
Sbjct: 112 LADEGEYTCSI-FTMPVRTAKSLVTVLGIPQ-----KPII 145

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 60  CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 119
             + ++   D+ K    +       +      T+ A   + L+C    ++  D +  W++
Sbjct: 17  MDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC--QVKDHEDSSLQWSN 74

Query: 120 NGVRI-GNMDLNELETPNINIDGG-----LLEITNASFADAGEYECVVKSTVGKISTKTT 173
              +     +   L    I +         + I+N + AD GEY C +  T+   + K+ 
Sbjct: 75  PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133

Query: 174 VIVEGPPGLP 183
           V V G P  P
Sbjct: 134 VTVLGIPQKP 143

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 12/170 (7%)

Query: 428 HRIKYWKEDNPEETAVYYLSRTTRN---WALIVG-LQPDTKYYVKVMAYNNAGEGPESER 483
            R+ Y       E                 L++  +     Y + + A            
Sbjct: 33  LRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLW---KGS 89

Query: 484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY-VSPSFEEEPIIGYKVRVWEVDQDMSR 542
           +    + K     P  + +      T+ +TW     P       + Y V +W  +     
Sbjct: 90  FKPSEHVKPR--APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADF 147

Query: 543 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQ 590
               +  +  +L      L  G  Y  RV A++   +   S  SP+  + 
Sbjct: 148 RIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 197

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 13/144 (9%)

Query: 252 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE-P 310
           +V    Y   + AG +L +     PS        KP +AP  +         L ++W  P
Sbjct: 68  VVSADNYTLDLWAGQQLLWKGSFKPSEHV-----KP-RAPGNLTVHTNVSDTLLLTWSNP 121

Query: 311 LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAI 369
            P +     ++ Y +    +ND       +     +  ++    S       Y  +V+A 
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPA--DFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 179

Query: 370 NDVGPGPESE---VVTIFSAEDMP 390
                   SE        ++   P
Sbjct: 180 AQAYNTTWSEWSPSTKWHNSYREP 203

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 49/205 (23%)

Query: 4   EGGNVTIFCNPEAAPKPKFV-WKKDG-----------------------NIIGSGGRRKI 39
            G +V + C P        + W                           +  G     ++
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73

Query: 40  FENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSY---YEQLPPKITIAA 95
              G L+++     D   Y C       G  E+  RL V   P              +  
Sbjct: 74  DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133

Query: 96  HRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGN----MDLNELETPNINIDGGL--- 143
                  C++                W  NG R+           + +  +    GL   
Sbjct: 134 SAQEIATCNSRN------GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187

Query: 144 ---LEITNASFADAGEYECVVKSTV 165
              L +          + C    ++
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSL 212

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 26/200 (13%), Positives = 62/200 (31%), Gaps = 19/200 (9%)

Query: 402 FNSTAINVTWNPIELIRENIRGRLIGHRIKYW--KEDNPEETAVYYLSRTTRNWALIVGL 459
            +   I+  W+           +    ++  W  +    +   +  +S+ +    LI+G 
Sbjct: 13  NSRAQISCVWSQDGA------LQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILG- 65

Query: 460 QPDTKYYVKVMAYN---NAGEGPESERYLERTYRKAPQ---KPPSAVHIKGINPTTVHVT 513
            PD++    V          EG        + ++         P ++ +  +     +++
Sbjct: 66  APDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNIS 125

Query: 514 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA 573
           W     S   E  + ++ R          A    +         +  L+P  +Y  +V  
Sbjct: 126 WEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE-WICLETLTPDTQYEFQVRV 184

Query: 574 FSNGGD-GRMS--SPAITFQ 590
               G+    S  S  + F+
Sbjct: 185 KPLQGEFTTWSPWSQPLAFR 204

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 3/173 (1%)

Query: 307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 366
            W      +  +  ++     R+   T       +      + +    S+   T   V +
Sbjct: 21  VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTL 80

Query: 367 QAINDVGPGPESEVVTIFSAEDMPQ-VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL 425
           + +   G       +  F   +  + +AP  +      +   N++W   +    +   R 
Sbjct: 81  RVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQAS--HYFERH 138

Query: 426 IGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 478
           +    +     +  E A     +  + W  +  L PDT+Y  +V      GE 
Sbjct: 139 LEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 48/189 (25%)

Query: 5   GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTAT 63
           G +V + C  +        W+K+G  +     +      +L++   S  +DSG Y C   
Sbjct: 14  GTSVELTCPLD--SDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVCYTP 65

Query: 64  N------------VHGMDESKGRLIVL-------HGPSYYEQLPPKITIAAHRN-----L 99
                        V   D++K                   +    K  +    +     +
Sbjct: 66  ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSV 125

Query: 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 159
            L C    +        W  +G  I  ++  +              + N +    G Y+C
Sbjct: 126 LLTCGLTDKT-----IKWLKDGSIISPLNATKNT----------WNLGNNAKDPRGTYQC 170

Query: 160 VVKSTVGKI 168
                    
Sbjct: 171 QGAKETSNP 179

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
             G+V + C           W KDG+II      K        +   ++D  G Y C   
Sbjct: 121 GDGSVLLTCG---LTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGA 173

Query: 64  N 64
            
Sbjct: 174 K 174

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 33/301 (10%), Positives = 72/301 (23%), Gaps = 52/301 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTA 62
            G  V + C  +   +    W  D          ++  +G  L I      D+G Y+C  
Sbjct: 20  PGEMVVLTC--DTPEEDGITWTLDQ-------SSEVLGSGKTLTIQVKEFGDAGQYTCHK 70

Query: 63  TN-----VHGMDESKGRLIVLHGPSYYEQLPPKIT----IAAHRNLQLRCSAHTEELLDV 113
                     +   K   I        ++ P   T     A + + +  C   T    D+
Sbjct: 71  GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL 130

Query: 114 AYIWT----HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE----------YEC 159
            +        +  +        L    +  D    E +     D+               
Sbjct: 131 TFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMV 190

Query: 160 VVKSTVGKISTKTTVIVE--GPPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI- 215
                +      ++  +     P  P  +Q+  +  +    + W    T   P +++ + 
Sbjct: 191 DAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250

Query: 216 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 273
             +     +                             ++        V A +       
Sbjct: 251 FCVQVQGKSKREKKDRVFTDKTSAT-------------VICRKNASISVRAQDRYYSSSW 297

Query: 274 S 274
           S
Sbjct: 298 S 298

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 357 FYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL 416
                 EV V A++ +     +    I      P            NS  + V+W   + 
Sbjct: 181 EESLPIEVMVDAVHKLKYEQYTSSFFIRDI-IKPDPPKNLQLKPLKNSRQVEVSWEYPDT 239

Query: 417 IRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG 476
                    +   ++   +   E+    +  +T+        +       + V A +   
Sbjct: 240 WSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS------ATVICRKNASISVRAQDRYY 293

Query: 477 EGPESE 482
               SE
Sbjct: 294 SSSWSE 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 54/360 (15%), Positives = 102/360 (28%), Gaps = 123/360 (34%)

Query: 254 PWSTYEFKVIAGNELGYGEP-------SSPSPQYNTPADKPYQA---------PSRI--- 294
           P  T E +  +     Y E        +    +YN    +PY           P++    
Sbjct: 97  PIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 295 -GGGG-GKIGDLSISW---EPLPREKQNAPNIYYKIFW---RKKNDTEFQSETLKE-YGN 345
            G  G GK      +W   +      +    + +KIFW   +  N  E   E L++    
Sbjct: 156 DGVLGSGK------TWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 346 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNST 405
           +              +       I+ +    ++E+  +  ++               N  
Sbjct: 209 IDPNWTSRSDHSSNIKLR-----IHSI----QAELRRLLKSKPYE------------NCL 247

Query: 406 AI--NVTWNPIELIRE-NIRGR-LIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 461
            +  NV  N  +     N+  + L+                      TTR   +   L  
Sbjct: 248 LVLLNV-QNA-KAWNAFNLSCKILL----------------------TTRFKQVTDFLSA 283

Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK-PPSAVHIKGINPTTVHVTWRYVSPS 520
            T  ++ +  ++      E +  L +     PQ  P         NP       R +S  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---LTTNP-------RRLS-- 331

Query: 521 FEEEPIIGYKVRV----WE----VDQDMSRANDTIIPVGNTLDADIVDLSPG---KRYHM 569
                II   +R     W+    V+ D          +   +++ +  L P    K +  
Sbjct: 332 -----IIAESIRDGLATWDNWKHVNCD---------KLTTIIESSLNVLEPAEYRKMFDR 377

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 49.2 bits (116), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 6   GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
               + C  E+     + W+   N+  S        N  L I  ++    G Y C A 
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 41/203 (20%)

Query: 2   AGEGGNVTIFC----NPEAAPKPKFVWKKDGNII---GSG---------GRRKIFENGN- 44
                  T+ C    + E   + +  W+K+  ++    SG          R       N 
Sbjct: 6   KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65

Query: 45  -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR---NLQ 100
            ++I  +   D G Y C           +  L  +      +   P I+          +
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125

Query: 101 LRCSAH------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASF 151
           + CS                  W  NG  +         T + + +  L  ++   + + 
Sbjct: 126 IICSTSGGFPEPH-------LSWLENGEEL----NAINTTVSQDPETELYAVSSKLDFNM 174

Query: 152 ADAGEYECVVKSTVGKISTKTTV 174
                + C++K    +++     
Sbjct: 175 TTNHSFMCLIKYGHLRVNQTFNW 197

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 43/207 (20%)

Query: 4   EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSG-----------------GRRKI 39
           EG  V + C       +  ++P     W +DG I                     GR ++
Sbjct: 14  EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73

Query: 40  F-----ENGNLLISPVSRDDSGIYSC---TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
                 +N +L I     +D+G Y        +V    +     + +        +    
Sbjct: 74  LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133

Query: 92  TIAAHRNLQLRCSAHT--EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 149
            + + R  +L CS     E    + + WT N +                     L +T  
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---------PLDPETTRSSELTLTPR 184

Query: 150 SFADAGEYECVVKSTVGKISTKTTVIV 176
                    C +K    +++T+ TV +
Sbjct: 185 PEDHGTNLTCQMKRQGAQVTTERTVQL 211

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 24/111 (21%)

Query: 1   YAGEGGNVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFE------------NGN 44
               G NVT+  +        +  W    +   +     + K FE            +G 
Sbjct: 15  TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74

Query: 45  LLISPVSRDDSGIYSCTATNVHG-MDESKGRLIVLHGPSYYEQLP-PKITI 93
           L IS V ++D+  Y        G   E K +L V       + +P P I I
Sbjct: 75  LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV------LDPVPKPVIKI 119

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 44.0 bits (103), Expect = 9e-06
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 5  GGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCT 61
          G  V + C     P  + +W+ +   IG     +    +  +L +   S  + SG Y C 
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78

Query: 62 ATNVHGMDES 71
                 D +
Sbjct: 79 PRGSKPEDAN 88

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 47.5 bits (111), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 18  PKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 76
              +  WK     +     +  +    NLLI  +S  DSG+Y C +      +++  +++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVV 618

Query: 77  VLHGPSYYEQLPPKITIA 94
             H      ++ PK  +A
Sbjct: 619 AKHVLE--VKVVPKPVVA 634

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 18/89 (20%), Positives = 23/89 (25%), Gaps = 15/89 (16%)

Query: 4   EGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFENGN---------LLIS 48
            G +  +           KP   W K   +     SG R    E+ N         L I 
Sbjct: 26  TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIV 77
            V   D G Y          D     + V
Sbjct: 86  KVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYI------WTHNGVRIG-NMDLNELETPNINID 140
           P  +++   ++  +    + +EL D   I      W   G + G      E      N+ 
Sbjct: 19  PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY 78

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 179
              L I      D G Y   VK+     S    + VE P
Sbjct: 79  TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFV--WKKDGNIIGS-------------GGRRKIFENGNL 45
            A +GG++ + C+  +         W++   ++                 R        L
Sbjct: 14  SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73

Query: 46  LISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPS 82
            +  ++ +D+G Y C   T   G    +  L VL    
Sbjct: 74  TLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
            G       + V +V  +S  + W            + +       ST       ++ +E
Sbjct: 6   SGSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQRE 62

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
           +     R  A + + L   + Y   +         +   
Sbjct: 63  LMVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQ 100

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 15/143 (10%)

Query: 42  NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR--NL 99
              L I  V+  DSG Y C   +    +++   L V    S        + +  ++   +
Sbjct: 82  KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGS-----DLHVDVKGYKDGGI 136

Query: 100 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGE 156
            L C +           W++N        +  +E P +    GL  +        +    
Sbjct: 137 HLECRST-GWYPQPQIQWSNNKGEN----IPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191

Query: 157 YECVVKSTVGKISTKTTVIVEGP 179
             C ++S++  +    ++ +  P
Sbjct: 192 VSCTIRSSLLGLEKTASISIADP 214

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 26/207 (12%), Positives = 61/207 (29%), Gaps = 16/207 (7%)

Query: 307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEV 364
             E       +   + ++  + +  D        +   N   A     +    +  +   
Sbjct: 17  ILEM-WNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMADDIF 75

Query: 365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWN-PIELIRENIRG 423
            VQ  +  G     E  +   AE +    P  V      S    ++W    E     +  
Sbjct: 76  SVQITDQSG-QYSQECGSFLLAESIKPAPPFDV--TVTFSGQYQISWRSDYEDPAFYMLK 132

Query: 424 RLIGHRIKYWKEDNPEETAVYYL---SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE 480
             + + ++Y    +P   +         +     L +  + D+ Y ++V A    G   +
Sbjct: 133 GKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQ 192

Query: 481 ------SERYLERTYRKAPQKPPSAVH 501
                 S+  + +T  +  ++     H
Sbjct: 193 GTWSEWSDPVIFQTQSEELKEHHHHHH 219

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} Length = 105

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 4  EGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           G  VT+ C+    P+         +G +     + K  +      +  + +D+G Y C
Sbjct: 18 LGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 18/171 (10%), Positives = 47/171 (27%), Gaps = 11/171 (6%)

Query: 307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 366
            W P+P+    + +  Y++   +     + S +                 ++   Y  +V
Sbjct: 23  HWTPIPQ---QSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79

Query: 367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW-----NPIELIRENI 421
           +A++       +   T FS +++                   +        P +   E+I
Sbjct: 80  RAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESI 139

Query: 422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY 472
                 + I   K             +       ++      ++ V+V   
Sbjct: 140 FSHFREYEIAIRKVPGQFTFTH---KKVKHEQFSLLTSGEVGEFCVQVKPS 187

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT-TVHVTWRYVSPS 520
                 K       GE   + + ++ T    P + P  + +          VT+      
Sbjct: 82  KFLLIGKSNICVKVGEKSLTCKKIDLTTIVKP-EAPFDLSVVYREGANDFVVTFNTSHLQ 140

Query: 521 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN-GGD 579
            +   ++ + V   +   +       +      L      L P   Y ++V +  +    
Sbjct: 141 KKYVKVLMHDVAYRQEKDENKWT--HVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFK 198

Query: 580 GRMS--SPAITFQMGEEKE 596
           G  S  SP+  F+  E   
Sbjct: 199 GFWSEWSPSYYFRTPEINN 217

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus} Length = 102

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 5  GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
          G  VT+ C  + +         +KDG+                 I PV+   +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 16/124 (12%)

Query: 358 YYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELI 417
               Y  +V A++  G           S +    + P  V       + I +  +P    
Sbjct: 71  LTELYYARVTAVSAGGRSATKMTDRFSSLQHT-TLKPPDVTCISKVRS-IQMIVHPTPTP 128

Query: 418 RENIRGRLIGHR---------IKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK 468
                G  +            ++       +           +      GL PDT++   
Sbjct: 129 IRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMH-----LGGKQREYEFFGLTPDTEFLGT 183

Query: 469 VMAY 472
           +M  
Sbjct: 184 IMIL 187

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus} Length = 118

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 5   GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           G  VT+ C  + +         +KDG+                 I PV+   +G YSC  
Sbjct: 23  GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIY 82

Query: 63  TNVHGMDESKGRL-IVLHGPSYYEQLPPKIT 92
           +      E    L + +   +  +   P  T
Sbjct: 83  SKGITWSERSKTLELKVIKENVIQTPAPGPT 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	626
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	100.0
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	100.0
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	100.0
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.98
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.97
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.97
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.97
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.97
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.97
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.97
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.96
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.96
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.96
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.96
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.95
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.95
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.95
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.94
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.94
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.94
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.94
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.94
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.94
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.94
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.94
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.94
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.93
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.93
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.93
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.93
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.93
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.93
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.93
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.93
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.93
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.93
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.93
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.93
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.93
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.93
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.93
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.93
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.93
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.93
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.93
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.93
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.93
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.93
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.92
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.92
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.92
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.92
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.92
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.92
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.92
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.92
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.92
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.92
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.92
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.92
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.92
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.92
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.92
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.92
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.92
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.91
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.91
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.91
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.91
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.91
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.91
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.91
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.91
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.91
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.91
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.91
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.91
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.91
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.91
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.91
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.91
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.91
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.91
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.9
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.9
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.9
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.9
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.9
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.9
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.9
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.9
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.9
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.9
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.9
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.9
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.9
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.89
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.89
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.89
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.89
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.89
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.89
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.89
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.89
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.89
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.89
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.89
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.89
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.88
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.88
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.88
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.88
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.88
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.88
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.88
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.88
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.88
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.88
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.88
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.88
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.88
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.88
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.88
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.88
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.88
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.88
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.88
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.87
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.87
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.87
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.87
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.87
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.87
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.87
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.87
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.87
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.87
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.87
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.86
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.86
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.86
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.86
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.86
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.86
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.86
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.85
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.85
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.85
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.85
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.85
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.85
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.85
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.85
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.85
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.85
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.85
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.85
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.84
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.84
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.84
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.84
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.84
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.84
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.84
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.84
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.84
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.84
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.84
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.83
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.83
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.83
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.83
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.83
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.83
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.83
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.83
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.83
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.83
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.83
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.83
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.83
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.83
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.83
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.83
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.82
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.82
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.82
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.82
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.82
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.82
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.82
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.82
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.82
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.82
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.82
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.82
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.82
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.82
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.81
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.81
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.81
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.81
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.81
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.81
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.81
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.81
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.81
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.8
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.8
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.8
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.8
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.8
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.8
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.8
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.79
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.79
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.79
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.79
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.79
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.79
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.79
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.79
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.79
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.78
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.78
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.78
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.78
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.78
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.78
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.78
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.77
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.77
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.77
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.77
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.77
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.77
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.77
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.77
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.77
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.76
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.76
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.76
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.75
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.75
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.75
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.75
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.75
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.75
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.75
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.75
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.75
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.75
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.74
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.74
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.73
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.73
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.73
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.73
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.72
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.72
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.72
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.72
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.71
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	99.71
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.7
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.7
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.7
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.7
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.69
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.69
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.69
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.69
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.69
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.69
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.69
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.69
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.69
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.68
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.67
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.67
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.67
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.67
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.67
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.66
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.66
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.66
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.66
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.66
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.65
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.65
1he7_A	126	High affinity nerve growth factor receptor; transf	99.64
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.64
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.64
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.64
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.64
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.64
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.64
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.64
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.63
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.63
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.63
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.63
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.62
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.62
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.62
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.62
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.62
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.61
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.61
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.61
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.61
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.61
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.61
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.61
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.6
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.6
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.6
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.6
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.6
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.6
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.59
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.59
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.59
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.59
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	99.59
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.58
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.58
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.58
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.58
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.58
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.58
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.58
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.58
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.58
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.58
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.58
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.58
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.58
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.58
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.58
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.58
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.57
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.57
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.57
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.57
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.57
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.57
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.56
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.56
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.56
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.56
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.56
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.56
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.56
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.56
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.56
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.56
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.55
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.55
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.55
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.55
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.55
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.54
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.54
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.54
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.54
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.54
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.54
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.53
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.53
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.53
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.53
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.53
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.52
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.52
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.52
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.52
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.52
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.52
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.52
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.52
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.52
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.52
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.52
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.51
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.51
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.51
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.51
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.51
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.51
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.51
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.51
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.51
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.51
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.51
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.5
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.5
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.5
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.5
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.5
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.49
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.49
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.49
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.49
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.49
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.49
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.48
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.48
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.48
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.48
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.48
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.48
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.48
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.48
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.48
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.48
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.48
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.48
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.47
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.47
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.47
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.47
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.47
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.47
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.47
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.47
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.47
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.47
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.46
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.46
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.46
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.46
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.46
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.46
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.45
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.45
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.45
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.45
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.45
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.45
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.45
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.45
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.44
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.44
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.44
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.44
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.44
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.44
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.44
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.44
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.44
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.44

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-56  Score=474.71  Aligned_cols=551  Identities=18%  Similarity=0.216  Sum_probs=350.9

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCC-CCCEEEEEEEEcCCCCceeeE-EEEEE--
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKG-RLIVL--   78 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~-~l~v~--   78 (626)
                      ..+.+++|.|.+.|.|.|.|.|.|+|..+..-.      .+.|.|..+.. +..+.|+|++.|..|...... .+.+.  
T Consensus        89 ~~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~  162 (731)
T 2v5y_A           89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWN------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPC  162 (731)
T ss_dssp             SCSEEEEEEEEETTCCCCSEEEEECCCCCSSCE------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCC
T ss_pred             CCcceEEEEEecCCCCccceeEEEeCCcCCcee------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccc
Confidence            456799999999999999999999998774322      23466766533 345899999988888754432 22221  


Q ss_pred             -eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEe--eCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         79 -HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        79 -~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                       .+|.+.  .+.+..+.+|++++|.|.+.|.|.|.+. .|+  +||..+...........+   ..+.|.|.+++..|+|
T Consensus       163 ~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p~i~-~W~~~~~g~~l~~~~~~~~~~~~---~~~~l~I~~~~~~d~g  236 (731)
T 2v5y_A          163 TRTPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDR-LWLQGIDVRDAPLKEIKVTSSRR---FIASFNVVNTTKRDAG  236 (731)
T ss_dssp             SSSCEEC--CCCCEEEETTSCEEEEEEEESCCCTTCE-EEEEESSSCCEEEEEEEECCSSE---EEEEEEECSCCTTTCE
T ss_pred             ccccccc--cccceEEeCCCcEEEEEEeCCCCCCcee-EEEecCCCccccccceEEecccc---ceEEEEEcccccccCe
Confidence             245544  3568999999999999999999998763 377  788877543210000011   2368999999999999


Q ss_pred             eEEEEEEeCCCc-eEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCC-CCCcccEEEEEEeecCCCCceEeeccee
Q psy12061        156 EYECVVKSTVGK-ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVI  233 (626)
Q Consensus       156 ~Y~C~a~n~~g~-~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~w~~~~~~~~  233 (626)
                      .|+|.|.|..|. .+..+.|.|..+|.+|..+.+...+..++.|.|.++.. ++.++..|.|+++.. ...|.....   
T Consensus       237 ~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~---  312 (731)
T 2v5y_A          237 KYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSWNDRQP---  312 (731)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES-SSSCEEEEE---
T ss_pred             EEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEEC-CCCceEEec---
Confidence            999999999998 78889999999999999999988899999999997653 347899999999875 456754322   


Q ss_pred             eeeeeccCCceeEEEEeeccCCceEEEEEEEe--cCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeC
Q psy12061        234 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAG--NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPL  311 (626)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~--n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~  311 (626)
                             .....+.+.+ |.+++.|.|+|.|.  |..|.+.++... .+.+....|+.+|.++.+...+.+++.|+|+++
T Consensus       313 -------~~~~~~~i~~-L~p~t~Y~~~V~A~~~N~~G~s~~S~~~-~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p  383 (731)
T 2v5y_A          313 -------VDSTSYKIGH-LDPDTEYEISVLLTRPGEGGTGSPGPAL-RTRTKCADPMRGPRKLEVVEVKSRQITIRWEPF  383 (731)
T ss_dssp             -------CCSSEEEECS-CCTTCEEEEEEEEECSSTTCSCCBCCCE-EEECCCCCCSCCCEEEEEEEECSSCEEEEEECC
T ss_pred             -------cCcceEEEeC-CCCCCEEEEEEEEEecCCCccccCCCcE-EeeecCCCCCCCCceeEEEeccCCeEEEEEECC
Confidence                   1224566655 99999999999999  999999877764 567777788889999999988999999999985


Q ss_pred             CCCCcccCcceEEEEEEecCCCcceeeee-eeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCC
Q psy12061        312 PREKQNAPNIYYKIFWRKKNDTEFQSETL-KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP  390 (626)
Q Consensus       312 ~~~~~~~~~~~y~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p  390 (626)
                      .....++.+.+|.|+|+......+..... ..........+.+.+|.|++.|.|+|+|.|..|.|. |..+.++|.+.+|
T Consensus       384 ~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P  462 (731)
T 2v5y_A          384 GYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLP  462 (731)
T ss_dssp             CHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCC
T ss_pred             CcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCC
Confidence            43334567889999999876433322111 111223445688999999999999999999999985 8889999999888


Q ss_pred             CCCC-CceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc------cceEEEEecCccceEEEeCCccCc
Q psy12061        391 QVAP-QGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE------ETAVYYLSRTTRNWALIVGLQPDT  463 (626)
Q Consensus       391 ~~~p-~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~------~~~~~~~~~~~~~~~~i~~L~p~t  463 (626)
                      ..+| ..+.... ..+++.|+|++|...    +|.|.+|.|+|+......      .............++.+.+|+|++
T Consensus       463 ~~p~~~~~~~~~-~~~si~l~W~~P~~~----~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t  537 (731)
T 2v5y_A          463 GAVPTESIQGST-FEEKIFLQWREPTQT----YGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGT  537 (731)
T ss_dssp             CCCCTTTCEEEE-ETTEEEEECCCCSCC----SSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTE
T ss_pred             CCCCcceEEeee-cCCeEEEEEcCCCCC----CCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCC
Confidence            8555 3565553 578999999998643    377999999998765431      112222334556679999999999


Q ss_pred             eEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEE-EeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc
Q psy12061        464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH-IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR  542 (626)
Q Consensus       464 ~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~-~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~  542 (626)
                      .|.|+|+|+|..|.|+++. ..++|...+|..|+.... ....+.+++.|+|.  +|.+.+++|.+|.|.|+..+.....
T Consensus       538 ~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~--pp~~~~g~I~~Y~v~~~~~~~~~~~  614 (731)
T 2v5y_A          538 TYSFTIRASTAKGFGPPAT-NQFTTKISAPSMPAYELETPLNQTDNTVTVMLK--PAHSRGAPVSVYQIVVEEERPRRTK  614 (731)
T ss_dssp             EEEEEEEEEETTEEEEEEE-EEEECCCCCCCC------------------------------------------------
T ss_pred             EEEEEEEEEeCCccCCCcc-cEEEcCCCCCCCCCcccccccccCCceEEEEEe--CCCCCCCceEEEEEEEEecCCCCCc
Confidence            9999999999999999884 778898888775443332 23457889999999  6778899999999988765432100


Q ss_pred             c----cc---------------------------------eeeec--CccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        543 A----ND---------------------------------TIIPV--GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       543 ~----~~---------------------------------~~~~~--~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      .    ..                                 .+...  .....|.+..|+|++.|.|+|+|++.+|.|..+
T Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aa~~~p~~~~~~~~~~vg~~~~~~~~~n~~L~p~~~Y~i~v~A~s~~g~~~~~  694 (731)
T 2v5y_A          615 KTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKI  694 (731)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCcccccCHHHHhhcCCcceEEEEcChhhCcccCCEEECCCCeECCEECCCCCCCCceEEEEEEEEecCCCcEe
Confidence            0    00                                 00000  011233456699999999999999999999988


Q ss_pred             CCcE
Q psy12061        584 SPAI  587 (626)
Q Consensus       584 ~~~~  587 (626)
                      +.+.
T Consensus       695 ~~v~  698 (731)
T 2v5y_A          695 DCVQ  698 (731)
T ss_dssp             ----
T ss_pred             eeEE
Confidence            6544

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-51  Score=430.26  Aligned_cols=542  Identities=15%  Similarity=0.201  Sum_probs=371.8

Q ss_pred             CCCCceEEEEeeeC-------CCCCCeeEEEeCCEEccCCCcEEEccC--CcEEEccCCCCCCEEEEEEEEcC--CCCce
Q psy12061          2 AGEGGNVTIFCNPE-------AAPKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCTATNV--HGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-------g~p~p~i~W~~~~~~i~~~~~~~~~~~--g~L~i~~v~~~d~G~Y~C~a~n~--~g~~~   70 (626)
                      +.+|++++|.|.+.       +.|.+.|.|++||..|... ++.+..+  .+|.|.++...|++ |.|.+...  .....
T Consensus        15 v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~-~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~~~~~~~~   92 (589)
T 3l5h_A           15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASLNIQ-LTCNILTFGQLEQNV   92 (589)
T ss_dssp             CCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGG-GCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCTTCC-CCC
T ss_pred             EeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChH-HccccCCcEeEEEEecCCCccee-eEEecccCCCcccEE
Confidence            57899999999997       6778899999999878643 2233322  36999999998866 77887642  12233


Q ss_pred             eeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccC--CcceeE--EEeeCCEEeccccCCccCCCeeE---ecCCe
Q psy12061         71 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE--LLDVAY--IWTHNGVRIGNMDLNELETPNIN---IDGGL  143 (626)
Q Consensus        71 ~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p--~p~~~i--~W~~~~~~~~~~~~~~~~~~~~~---~~~~~  143 (626)
                      ..+.|.|..+|.    +|.++.+..-..-.+.|.+....  .+...+  .+...+...          ....   .....
T Consensus        93 ~~~~l~v~~pP~----~P~nl~c~~~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~----------~~c~~~~~~~~~  158 (589)
T 3l5h_A           93 YGITIISGLPPE----KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKF----------ADCKAKRDTPTS  158 (589)
T ss_dssp             CCCCCCC-CCCC----CCEEEEEEEETTSCEEEEEECCSCCSSCEEEEECCBCSSSBC----------CCEECBTTBSSC
T ss_pred             EeEEEeccCCCC----CCEeeEEEECCCceEEEEECCCCcCCcCceEEEEEEEcCCCc----------ccCCCCCCCcEE
Confidence            455666655552    34445444332233444443321  111111  111111000          0010   01234


Q ss_pred             EEEe-ecCCCCCEeEEEEEEeCCCceE-EEEEEEEe--CCCCCCCceEEE--EEeccceEEEEecCCCCCCcccEEEEEE
Q psy12061        144 LEIT-NASFADAGEYECVVKSTVGKIS-TKTTVIVE--GPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIA  217 (626)
Q Consensus       144 l~i~-~~~~~d~g~Y~C~a~n~~g~~~-~~~~l~v~--~~P~~p~~~~~~--~~~~~~~~l~W~~~~~~~~~~~~y~v~~  217 (626)
                      ..|. ++.....+.|+|.|.|..|... ....+...  .+|.+|.++.+.  ....+++.|+|++|...+..+..|.|++
T Consensus       159 c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~  238 (589)
T 3l5h_A          159 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY  238 (589)
T ss_dssp             CBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEE
T ss_pred             EEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEE
Confidence            4444 5666778899999999999752 23333322  378999999884  4678999999998876666789999999


Q ss_pred             eecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCC--cccCCCCCCCCCCceeE
Q psy12061        218 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPADKPYQAPSRIG  295 (626)
Q Consensus       218 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~--~~~~~~~~p~~~p~~~~  295 (626)
                      +..+...|..+.....      ......+.+.+ |.|++.|.|+|+|.|..|.+.++..+.  .+.+....|..+|..+.
T Consensus       239 ~~~~~~~w~~~~~~~~------~~~~~~~~i~~-L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~  311 (589)
T 3l5h_A          239 RTKDASTWSQIPPEDT------ASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWY  311 (589)
T ss_dssp             EETTCSCCBCCCTTSS------CSCCSEEEECS-CCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEE
T ss_pred             CCCCCCCcEEEccccC------cCceeEEEECC-CCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEE
Confidence            9988888876532110      01223555655 999999999999999999877654433  34677777767887655


Q ss_pred             ee----cCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecC
Q psy12061        296 GG----GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND  371 (626)
Q Consensus       296 ~~----~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~  371 (626)
                      ..    ..+.+++.|.|+++++...++.+.+|+|+|+..+. .+.....      ....+++  |.+++.|.|+|.|.|.
T Consensus       312 ~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~-~~~~~~~------~~~~~~~--l~~~~~Y~~~V~A~n~  382 (589)
T 3l5h_A          312 KIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-HLQNYTV------NATKLTV--NLTNDRYLATLTVRNL  382 (589)
T ss_dssp             ECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTS-CCCBCCC------SSSCCEE--CCCSSCCCEEEEEEBT
T ss_pred             EeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCC-Cceeecc------CCceEEE--EeCCCCEEEEEEEEeC
Confidence            33    45678999999987777888999999999976553 2322111      1122223  7799999999999999


Q ss_pred             CCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc--eEEEEecC
Q psy12061        372 VGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET--AVYYLSRT  449 (626)
Q Consensus       372 ~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~--~~~~~~~~  449 (626)
                      .|.|.++..... +....++.+|.++.+... .+++.|+|++|..       .+.+|.|+|+........  ........
T Consensus       383 ~G~~~~s~~~~~-~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~-------~i~~Y~v~~~~~~~~~~~~~~~~~~~~~  453 (589)
T 3l5h_A          383 VGKSDAAVLTIP-ACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE-------SVKKYILEWCVLSDKAPCITDWQQEDGT  453 (589)
T ss_dssp             TBCCCCCCCCCC-CTTCCCCSCCCSCEEEEC-SSSEEEECCCCSS-------CCSCBCCEEEEECSSSCCCEEECCBCSS
T ss_pred             CccCCCeEEEee-cccccCCCCcceEEEEEC-CCeEEEEEECCCC-------CccEEEEEEEECCCCCCCccCcEEeeCC
Confidence            999988764322 222223446668887755 6899999999863       378999999877654321  11112233


Q ss_pred             ccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeE
Q psy12061        450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGY  529 (626)
Q Consensus       450 ~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y  529 (626)
                      ....+.+.+|.|++.|.|+|+|+|..|.|..+ ...+.|.+..|..+| ++.+...+.+++.|+|+++++.+.+|.|.+|
T Consensus       454 ~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~-~~~~~t~~~~P~~pp-~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y  531 (589)
T 3l5h_A          454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNY  531 (589)
T ss_dssp             CCEEECCSCCCSSSEEEEEECBEETTEECCCE-EEEEESSCCCCSSCC-CCCEECCCSSCBEEBCCCCCHHHHCSCEEEE
T ss_pred             cceEEehhccccCcEEEEEEEEEeCCcccCCE-EEEEEeccCCCCCCC-eEEEeecccceEEEEecCCCHHHcCccceeE
Confidence            34456679999999999999999999988775 466778888887655 7888888999999999965567788999999


Q ss_pred             EEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        530 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       530 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      .|+|+..++..    .........+.+.+.+|.|++.|.|+|+|.|.+| |++|.+ +.|+|.
T Consensus       532 ~v~~~~~~~~~----~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-~~~S~~-~~~~T~  588 (589)
T 3l5h_A          532 TIFYRTIIGNE----TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPE-FTFTTP  588 (589)
T ss_dssp             EECCBCSSCCC----CCEEECTTCCBCCBCSCCSSCCEECCEEEEETTE-EEECCC-CEECCC
T ss_pred             EEEEEeCCCCe----EEEEeCCcccEEEecCCCCCCEEEEEEEEEeCCC-CCCCCC-eEEecC
Confidence            99887655432    2445667889999999999999999999999999 888854 556654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=6.1e-46  Score=367.35  Aligned_cols=358  Identities=23%  Similarity=0.363  Sum_probs=287.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEccC-----CCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIGS-----GGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i~~-----~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+  |..|..     +.|+.+..   +++|.|.+++.+|+|.|+|.|.|..|....
T Consensus        12 ~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   91 (389)
T 2jll_A           12 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK   91 (389)
T ss_dssp             EETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcce
Confidence            46899999999999999999999999  998864     46777754   347999999999999999999999999988


Q ss_pred             eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEe
Q psy12061         72 KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEIT  147 (626)
Q Consensus        72 ~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~  147 (626)
                      .+.|.|..+|.+.. ++....+..|++++|.|.+.+.|.|  .+.|+|+|..+.....     .++..    ....|.|.
T Consensus        92 ~~~l~V~~~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~i~W~~~g~~l~~~~~-----~~~~~~~~~~~~~L~i~  163 (389)
T 2jll_A           92 SMYLDIEYAPKFIS-NQTIYYSWEGNPINISCDVKSNPPA--SIHWRRDKLVLPAKNT-----TNLKTYSTGRKMILEIA  163 (389)
T ss_dssp             EEEEEEEEEEEECC-SCCEEEECTTCCEEEEECEEEESCC--EEEEEETTEESSCTTC-----TTEEEEECSSCEEEEEC
T ss_pred             EEEEEEEeCCEEec-CcceEEeccCCEEEEEEEEEecCCC--eEEEEECCccCCcccC-----ceEEEeccCCEEEEEEC
Confidence            99999998887765 4555688999999999999999875  5699999999875421     12222    24579999


Q ss_pred             ecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCC-CCCCcccEEEEEEeecCCCCce
Q psy12061        148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWF  226 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~w~  226 (626)
                      ++...|+|.|+|.|.|..|..+..+.+.+..+|.+|.++.+......++.|.|.++. .++.++..|.|+++..+...|.
T Consensus       164 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~  243 (389)
T 2jll_A          164 PTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWK  243 (389)
T ss_dssp             CCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCE
T ss_pred             CCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccE
Confidence            999999999999999999999999999999999999999998889999999999765 4456889999999998888887


Q ss_pred             EeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEE
Q psy12061        227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI  306 (626)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l  306 (626)
                      .....         .....+.+.+ |.+++.|.|+|.|.|..|.+.++... .+.+.+..++.+|. +.....+.+++.|
T Consensus       244 ~~~~~---------~~~~~~~i~~-l~~~~~y~~~v~A~N~~G~~~~s~~~-~~~t~~~~~p~~p~-~~~~~~~~~~v~l  311 (389)
T 2jll_A          244 IVRSH---------GVQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKIE-IFQTLPVREPSPPS-IHGQPSSGKSFKL  311 (389)
T ss_dssp             EEECS---------TTCSEEEECS-CCTTCEEEEEEEEEESSCBCCCCCCE-EEECCCCCCCCCCC-EEEEEETTTEEEE
T ss_pred             Eeecc---------CCcceEEECC-ccCCCEEEEEEEEEcCCccCCCCcce-EEEecCCCCCCCCc-cccccCcCCEEEE
Confidence            54321         1223566655 99999999999999999998877764 45555555556674 5555568899999


Q ss_pred             EEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEc
Q psy12061        307 SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFS  385 (626)
Q Consensus       307 ~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t  385 (626)
                      +|.+  +.+.++++.+|.|+|+..+...|...... .  .....+.+.+|.|++.|.|+|+|.|..|.|.+|.. .+.|
T Consensus       312 ~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~--~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~-~~~T  384 (389)
T 2jll_A          312 SITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKV-Q--GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY-EFSM  384 (389)
T ss_dssp             EECC--CCCCSSCCCEEEEEEEC-----CCBCCEE-C--TTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE-EEEC
T ss_pred             EEEC--CCCCCCcccEEEEEEEeCCCCcceeEeec-c--CCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee-EecC
Confidence            9998  56778899999999998766666532211 1  12346789999999999999999999999998865 5555

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=2.7e-44  Score=375.25  Aligned_cols=458  Identities=14%  Similarity=0.182  Sum_probs=323.3

Q ss_pred             CCCceEEecCCcEEEEEEecc-------cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHT-------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~-------~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      .|++..+..|++++|.|.+..       .+.+  .|.|++||..+.....     ..+....+.|.|.++...|++ |+|
T Consensus         9 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~--~i~W~~~~~~i~~~~~-----~~~~~~~~~l~i~~~~~~~~~-y~C   80 (589)
T 3l5h_A            9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN--YIVWKTNHFTIPKEQY-----TIINRTASSVTFTDIASLNIQ-LTC   80 (589)
T ss_dssp             SCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTT--TCCCBCSSSBSCGGGC-----BCCSSSCCBCCCCCCCSSCCC-CCC
T ss_pred             ecCCCEEeCCCCEEEEEEEeCccCcccccccc--ceEEEeCCEECChHHc-----cccCCcEeEEEEecCCCccee-eEE
Confidence            467788999999999999984       3444  4589999987765421     112223568999999988765 779


Q ss_pred             EEEeC--CCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeee
Q psy12061        160 VVKST--VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV  237 (626)
Q Consensus       160 ~a~n~--~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~  237 (626)
                      .+...  .+.....+.|.+..+|.+|.++.|......++.++|+++.+. .....|.|+++.... .|..+...      
T Consensus        81 ~~~~~~~~~~~~~~~~l~v~~pP~~P~nl~c~~~~~~~~~~~W~~~~~~-~~~~~y~l~~~~~~~-~~~~c~~~------  152 (589)
T 3l5h_A           81 NILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRET-HLETNFTLKSEWATH-KFADCKAK------  152 (589)
T ss_dssp             C-CCTTCC-CCCCCCCCCC-CCCCCCEEEEEEEETTSCEEEEEECCSCC-SSCEEEEECCBCSSS-BCCCEECB------
T ss_pred             ecccCCCcccEEEeEEEeccCCCCCCEeeEEEECCCceEEEEECCCCcC-CcCceEEEEEEEcCC-CcccCCCC------
Confidence            88642  223356678888899999999999999999999999987644 457899998765432 22221110      


Q ss_pred             eccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEe--ecCCcCeEEEEEeeCCCCC
Q psy12061        238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG--GGGKIGDLSISWEPLPREK  315 (626)
Q Consensus       238 ~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~--~~~~~~~v~l~W~~~~~~~  315 (626)
                        ......+.+..+|.+++.|.|+|.|.|..|.+.+...  .+.+....++.+|.++.+  ...+.+++.|+|++  +..
T Consensus       153 --~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~--~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~--p~~  226 (589)
T 3l5h_A          153 --RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHI--NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSI  226 (589)
T ss_dssp             --TTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCE--EECGGGSEECCCCCSCEEECTTTCTTCEEEECCC--CGG
T ss_pred             --CCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccE--EEccccEEEcCCCceEEEEecCCCCCeEEEEeCC--CCC
Confidence              0122344454359999999999999999997643221  233333334578888888  45678999999998  444


Q ss_pred             cccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCC---CccEEEEccCCCCCC
Q psy12061        316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE---SEVVTIFSAEDMPQV  392 (626)
Q Consensus       316 ~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~---s~~~~~~t~~~~p~~  392 (626)
                      .++.+..|.|+|+..+...|....... .......+.+.+|.|++.|.|+|+|.|..|.|.+   |....+.|.+..|..
T Consensus       227 ~~~~~~~Y~v~~~~~~~~~w~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~  305 (589)
T 3l5h_A          227 KSVIILKYNIQYRTKDASTWSQIPPED-TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK  305 (589)
T ss_dssp             GGTSCEEEEEEEEETTCSCCBCCCTTS-SCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCS
T ss_pred             CCeeeEEEEEEECCCCCCCcEEEcccc-CcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCC
Confidence            567889999999998877787543211 1123456789999999999999999999987665   566677888888877


Q ss_pred             CCCceEEE----eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        393 APQGVFSR----GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       393 ~p~~~~~~----~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      +|..+...    ..+.+++.|.|+++.....  +|.|.+|.|.|+..+.....     .......+  ..|.+++.|.|+
T Consensus       306 ~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~--~g~i~~Y~v~~~~~~~~~~~-----~~~~~~~~--~~l~~~~~Y~~~  376 (589)
T 3l5h_A          306 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEA--NGKILDYEVTLTRWKSHLQN-----YTVNATKL--TVNLTNDRYLAT  376 (589)
T ss_dssp             CCCEEEECCSCSSTTSCCEEEEECCCCTTTS--SSCCCEEEEEECCTTSCCCB-----CCCSSSCC--EECCCSSCCCEE
T ss_pred             CCcEEEEeecCcCCCcceEEEEEeeCCchhc--cCceeeEEEEEecCCCCcee-----eccCCceE--EEEeCCCCEEEE
Confidence            88766543    3567899999998654333  48899999998655443221     12222333  448999999999


Q ss_pred             EEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc-cccee
Q psy12061        469 VMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR-ANDTI  547 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~-~~~~~  547 (626)
                      |+|.|..|.|+.+... +.+....++.||.++.+... .+++.|+|+  +|.   ..+.+|.|+|+..+..... .....
T Consensus       377 V~A~n~~G~~~~s~~~-~~~~~~~~~~p~~~l~~~~~-~~si~l~W~--~p~---~~i~~Y~v~~~~~~~~~~~~~~~~~  449 (589)
T 3l5h_A          377 LTVRNLVGKSDAAVLT-IPACDFQATHPVMDLKAFPK-DNMLWVEWT--TPR---ESVKKYILEWCVLSDKAPCITDWQQ  449 (589)
T ss_dssp             EEEEBTTBCCCCCCCC-CCCTTCCCCSCCCSCEEEEC-SSSEEEECC--CCS---SCCSCBCCEEEEECSSSCCCEEECC
T ss_pred             EEEEeCCccCCCeEEE-eecccccCCCCcceEEEEEC-CCeEEEEEE--CCC---CCccEEEEEEEECCCCCCCccCcEE
Confidence            9999999999888543 33333334556778877755 689999999  443   2788999998876654221 11222


Q ss_pred             eecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      ........+.+.+|.|++.|.|+|+|+|..|.|.++
T Consensus       450 ~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~  485 (589)
T 3l5h_A          450 EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE  485 (589)
T ss_dssp             BCSSCCEEECCSCCCSSSEEEEEECBEETTEECCCE
T ss_pred             eeCCcceEEehhccccCcEEEEEEEEEeCCcccCCE
Confidence            333445567779999999999999999999999875

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=345.08  Aligned_cols=415  Identities=18%  Similarity=0.284  Sum_probs=293.7

Q ss_pred             CCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCC-CceEEEEEeccceEEEEecCCC-CCCcccEEEEEEeecCC-----
Q psy12061        150 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-GGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWN-----  222 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p-~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~-----  222 (626)
                      ...+.|.+.| +.|..|..=......+...|.+| .++.+...+.+++.|+|+++.+ ++.++. |.|+++....     
T Consensus       131 d~~c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~  208 (680)
T 1zlg_A          131 DNECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSE  208 (680)
T ss_pred             cccCCCcccc-ccccccccccccceeeecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCc
Confidence            3457888888 56667764222333357889999 8999999999999999998854 356666 9999987632     


Q ss_pred             ---CCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCC-CCCCCCceeEeec
Q psy12061        223 ---STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD-KPYQAPSRIGGGG  298 (626)
Q Consensus       223 ---~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~-~p~~~p~~~~~~~  298 (626)
                         ..|..+..          .....+.+.+ |.|++.|.|+|.|.|..|.+.++.....+++... .++.+|.++.+..
T Consensus       209 ~~~~~w~~v~~----------~~~~~~~i~~-L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~  277 (680)
T 1zlg_A          209 DDATHWQTVAQ----------TTDERVQLTD-IRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLAN  277 (680)
T ss_pred             cccCceEEEEe----------cCCCeEEeCC-CCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeee
Confidence               46766533          1223456655 9999999999999999995545554445566444 5678899999887


Q ss_pred             C--CcC---eEEEEEeeCCCCCcccCcceEEEEEEec-C------CCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        299 G--KIG---DLSISWEPLPREKQNAPNIYYKIFWRKK-N------DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       299 ~--~~~---~v~l~W~~~~~~~~~~~~~~y~i~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      .  +.+   ++.|+|++  +...++++.+|+|+|+.. +      ...|.....    ......+++.+|.|++.|.|+|
T Consensus       278 ~~~~~~g~~sv~l~W~p--P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~l~~L~p~t~Y~~~V  351 (680)
T 1zlg_A          278 STVNSDGSVTVTIVWDL--PEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTT----DGFQNSVILEKLQPDCDYVVEL  351 (680)
T ss_pred             eeecCCCceEEEEEecC--CCCCCCceeEEEEEEEecccccccCCccceEEEEE----cCCeeEEEeCCCCCCCEEEEEE
Confidence            7  677   99999998  445678999999999832 1      123443322    1234678899999999999999


Q ss_pred             EEecCCCCCCCCcc---EEEEccCCCCCCCCCceEEEeeecceEEE-----------EeeeccccccccceeeEEEEEEE
Q psy12061        367 QAINDVGPGPESEV---VTIFSAEDMPQVAPQGVFSRGFNSTAINV-----------TWNPIELIRENIRGRLIGHRIKY  432 (626)
Q Consensus       367 ~a~n~~g~~~~s~~---~~~~t~~~~p~~~p~~~~~~~~~~~si~l-----------~W~~~~~~~~~~~~~i~~Y~v~~  432 (626)
                      +|.|..|.|.+|..   +.+.|....|.  |.++.+...+.+++.|           +|.+|...     +.+.+|.|.|
T Consensus       352 ~A~n~~G~g~~S~~~~~v~~~T~~~~P~--p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~-----~~~~~y~v~w  424 (680)
T 1zlg_A          352 QAITYWGQTRLKSAKVSLHFTSTHATNN--KEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQ-----DGQLQVKVYW  424 (680)
T ss_pred             EEEECCCcCCCCCCceeEEEECCCCCCC--ccccccccccCccccccccccCCCccccccCCccc-----CCcceEEEEE
Confidence            99999999988877   77888777775  7788888888888877           99988532     2356888888


Q ss_pred             EecCCCccce------------------EEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecC----
Q psy12061        433 WKEDNPEETA------------------VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR----  490 (626)
Q Consensus       433 ~~~~~~~~~~------------------~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~----  490 (626)
                      +..+......                  ..........++.|.+|+|++.|.|+|+|.|..|.|+.. ...|.|..    
T Consensus       425 ~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~-~~~f~T~~~~~~  503 (680)
T 1zlg_A          425 KKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAE-AVFFTTPPCSAL  503 (680)
T ss_pred             eCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCcc-ccceeCCCcccc
Confidence            6655321000                  001123345679999999999999999999999966421 12222211    


Q ss_pred             -------------CCC-----CCCCce----EEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCc--cccce
Q psy12061        491 -------------KAP-----QKPPSA----VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS--RANDT  546 (626)
Q Consensus       491 -------------~~p-----~~~p~~----l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~--~~~~~  546 (626)
                                   ..|     +.+|.+    +.+...+.+ +.|+|++| ..+.+|.|++|.|+|+.......  .....
T Consensus       504 ~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP-~~~~ng~I~gY~V~y~~~~~~~~~~~~~~~  581 (680)
T 1zlg_A          504 KGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT-GHFSWKMA-KANLYQPMTGFQVTWAEVTTESRQNSLPNS  581 (680)
T ss_pred             ccCCccccccCCCCccccccccCCccccceeEEEeccCce-EEEEecCC-CCCCCCCceeEEEEEEEccCCCccccccce
Confidence                         112     156777    566666666 99999952 23458999999999876533211  11111


Q ss_pred             -----eeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecccc
Q psy12061        547 -----IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK  595 (626)
Q Consensus       547 -----~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~  595 (626)
                           ....++.+++.|.+|.|++.|.|+|+|+|.+|.|+. .+ ..+++....
T Consensus       582 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~-~~~~T~~~~  633 (680)
T 1zlg_A          582 IISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TI-KTFRTPELP  633 (680)
T ss_pred             eeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cc-eEEECCCCC
Confidence                 122356789999999999999999999999999997 33 557666543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=346.44  Aligned_cols=493  Identities=15%  Similarity=0.147  Sum_probs=328.9

Q ss_pred             CEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCce---EEecC------CcEEEEEEecccCCcceeEEEeeCCEEec
Q psy12061         55 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI---TIAAH------RNLQLRCSAHTEELLDVAYIWTHNGVRIG  125 (626)
Q Consensus        55 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~---~v~~g------~~~~l~C~~~~~p~p~~~i~W~~~~~~~~  125 (626)
                      +|.|.++-... +.....|.|.--.   +.......+   .-+.|      .+++|.|.+.|.|.|.+  .|.|+|..+.
T Consensus        45 ~g~y~~~~~s~-~~~~~~a~l~sp~---~~~~~~~c~~F~y~m~G~~~~~~g~l~v~c~~~g~P~p~i--~W~k~g~~~~  118 (731)
T 2v5y_A           45 SGSFMLVNASG-RPEGQRAHLLLPQ---LKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNP--IWNISGDPTR  118 (731)
T ss_dssp             SSEEEEEECTT-CCTTCEEEEEEEE---ECCSSCCEEEEEEEEECSSSSCSEEEEEEEEETTCCCCSE--EEEECCCCCS
T ss_pred             cccEEEEECcC-CCCCCEEEEEeCc---cCCCCCcEEEEEEEecCCCCCCcceEEEEEecCCCCccce--eEEEeCCcCC
Confidence            58898877664 4334556655321   111011111   22333      48999999999998855  8999998864


Q ss_pred             cccCCccCCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCCceEEE-EEEEEeCCCCCCC---ceEEEEEeccceEEEE
Q psy12061        126 NMDLNELETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKISTK-TTVIVEGPPGLPG---GVQVVEVHKTSATIQW  200 (626)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~~~~~-~~l~v~~~P~~p~---~~~~~~~~~~~~~l~W  200 (626)
                      .-            ....+.|..+...+ .+.|+|.+.|..|..... +.+.....+.+|.   ...+.......+.|.|
T Consensus       119 ~~------------~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~~~~~~~v~~G~~v~l~C  186 (731)
T 2v5y_A          119 TW------------NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQC  186 (731)
T ss_dssp             SC------------EEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEECCCCCEEEETTSCEEEEE
T ss_pred             ce------------eEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccccccceEEeCCCcEEEEE
Confidence            31            12245565542333 478899888887764322 1222221122221   1123344567789999


Q ss_pred             ecCCCCCCcccEEEEEEeecCC-CCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCc
Q psy12061        201 TDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ  279 (626)
Q Consensus       201 ~~~~~~~~~~~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~  279 (626)
                      ...... .+...+.... .++. ..+...      ...........+.|.+ |.+.+.|.|+|.|.|..|.+........
T Consensus       187 ~~~g~P-~p~i~~W~~~-~~g~~l~~~~~------~~~~~~~~~~~l~I~~-~~~~d~g~Y~c~A~n~~G~~~s~~~~l~  257 (731)
T 2v5y_A          187 SAIGRT-VAGDRLWLQG-IDVRDAPLKEI------KVTSSRRFIASFNVVN-TTKRDAGKYRCMIRTEGGVGISNYAELV  257 (731)
T ss_dssp             EEESCC-CTTCEEEEEE-SSSCCEEEEEE------EECCSSEEEEEEEECS-CCTTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EeCCCC-CCceeEEEec-CCCccccccce------EEeccccceEEEEEcc-cccccCeEEEEEEECCCCCcceeeEEEE
Confidence            864322 2222221111 1111 111100      0000000123556655 9999999999999999997433332223


Q ss_pred             ccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcce
Q psy12061        280 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY  359 (626)
Q Consensus       280 ~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~  359 (626)
                      +...+.+ +.+|..   ...+.+++.|.|.++ ...+++++..|.|+|+..+ ..|......     ....+.+.+|.|+
T Consensus       258 V~~~P~~-~~~p~~---~~~~~~~v~l~w~~~-~~~g~~~i~~Y~v~~~~~~-~~~~~~~~~-----~~~~~~i~~L~p~  326 (731)
T 2v5y_A          258 VKEPPVP-IAPPQL---ASVGATYLWIQLNAN-SINGDGPIVAREVEYCTAS-GSWNDRQPV-----DSTSYKIGHLDPD  326 (731)
T ss_dssp             EECCCCB-SSCCEE---EEECSSCEEEECCCS-SBSSCSCCCEEEEEEEESS-SSCEEEEEC-----CSSEEEECSCCTT
T ss_pred             EecCCCC-CCCcce---eccCCceEEEEeCCc-ccCCCCccEEEEEEEEECC-CCceEEecc-----CcceEEEeCCCCC
Confidence            3333322 234433   334678999999973 3345588999999999864 556543221     2356789999999


Q ss_pred             eEEEEEEEEe--cCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCC
Q psy12061        360 TEYEVKVQAI--NDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN  437 (626)
Q Consensus       360 ~~Y~~~v~a~--n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~  437 (626)
                      +.|.|+|.|.  |..|.+.+|....+++.+..|+.+|.++++...+.+++.|+|+++.....  ++.+.+|.|+|+....
T Consensus       327 t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~--~~~~~~y~v~y~~~~~  404 (731)
T 2v5y_A          327 TEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVT--RCHSYNLTVHYCYQVG  404 (731)
T ss_dssp             CEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHH--CSSSCEEEEEEEEESS
T ss_pred             CEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccc--cceeeeEEEEEEEccC
Confidence            9999999999  99999999999999999988988999999999999999999999864332  2567899999987764


Q ss_pred             CccceE---EEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCC-ceEEEeeeCCCEEEEE
Q psy12061        438 PEETAV---YYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP-SAVHIKGINPTTVHVT  513 (626)
Q Consensus       438 ~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p-~~l~~~~~~~~~~~l~  513 (626)
                      ......   ..........+++.+|+|++.|.|+|+|.|..|.|+ |..+.++|.+.+|..+| ..+.... ..+++.|+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~~~~~~~~-~~~si~l~  482 (731)
T 2v5y_A          405 GQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGST-FEEKIFLQ  482 (731)
T ss_dssp             SSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCCCCCCTTTCEEEE-ETTEEEEE
T ss_pred             CCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCCCCCCcceEEeee-cCCeEEEE
Confidence            332211   113334556799999999999999999999999985 88899999999887665 3565543 46899999


Q ss_pred             EeecCCCCCCCceeeEEEEEEEeccCCc-----cccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEE
Q psy12061        514 WRYVSPSFEEEPIIGYKVRVWEVDQDMS-----RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT  588 (626)
Q Consensus       514 W~~~~~~~~~~~i~~Y~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~  588 (626)
                      |+  +|...+|.|.+|.|+|+..+....     ..........+.+++.+.+|.|++.|.|+|+|+|..|.|++| . +.
T Consensus       483 W~--~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s-~-~~  558 (731)
T 2v5y_A          483 WR--EPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-T-NQ  558 (731)
T ss_dssp             CC--CCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEE-E-EE
T ss_pred             Ec--CCCCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCc-c-cE
Confidence            99  567788999999999987664311     112234456778899999999999999999999999999988 3 44


Q ss_pred             Eeecc
Q psy12061        589 FQMGE  593 (626)
Q Consensus       589 ~~~~~  593 (626)
                      +++..
T Consensus       559 ~~T~~  563 (731)
T 2v5y_A          559 FTTKI  563 (731)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            55554

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=100.00  E-value=1.4e-37  Score=304.50  Aligned_cols=363  Identities=19%  Similarity=0.272  Sum_probs=268.5

Q ss_pred             CCCCCCceEEEEEecc-ceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCce
Q psy12061        179 PPGLPGGVQVVEVHKT-SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST  257 (626)
Q Consensus       179 ~P~~p~~~~~~~~~~~-~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  257 (626)
                      ||.+|.++++...... ++.|+|+++.  +..+.+|.|+++..+...|.......       ......+.+.+ |.+++.
T Consensus         1 Pp~~P~~l~~~~~~~~~sv~l~W~~~~--~~~i~~Y~v~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~-L~p~t~   70 (368)
T 1fnf_A            1 PLSPPTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQGNSLEEVV-------HADQSSCTFDN-LSPGLE   70 (368)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCS--CSSCCEEEEEEEETTTCSSCCEEEEE-------CTTCCEEECCC-CCTTSC
T ss_pred             CCCCCcceEEEecCCCcEEEEEEeCCC--CCCceEEEEEEEECCCCCCceeEEEe-------cCCcCEEEECC-CCCCCE
Confidence            6889999999887776 5999999875  35689999999986554332111111       02233455555 999999


Q ss_pred             EEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCC-Ccce
Q psy12061        258 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQ  336 (626)
Q Consensus       258 y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~-~~~~  336 (626)
                      |.|+|+|.|..|.+.+...    .+...+  .+|.++.+...+.+++.|+|++++    ++.+.+|.|+|+..+. ..|.
T Consensus        71 Y~~~V~a~~~~g~s~~~~~----~~~~~~--~~p~~l~~~~~~~~si~l~W~~p~----~~~~~~Y~v~~~~~~~~~~~~  140 (368)
T 1fnf_A           71 YNVSVYTVKDDKESVPISD----TIIPAV--PPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVA  140 (368)
T ss_dssp             EEEEEEEEETTEECCCEEE----EECCCC--CCCEEEEEESCCSSCEEEEEECCT----TCCCSEEEEEEEETTCTTCCE
T ss_pred             EEEEEEEEcCCCccCceee----eecCCC--cCCceeEEEEcCCCeEEEEeeCCC----CCCCcEEEEEEEECCCCCccE
Confidence            9999999999997764322    222222  378899999889999999999842    3678999999998663 3454


Q ss_pred             eeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccc
Q psy12061        337 SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL  416 (626)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~  416 (626)
                      .....    .....+.+.+|.|++.|.|+|+|.|..|.+.+.... ..+   .| .+|.++.+...+.+++.|+|+++. 
T Consensus       141 ~~~~~----~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~-~~~---~~-~~P~~l~~~~~~~~sv~l~W~~p~-  210 (368)
T 1fnf_A          141 ELSIS----PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR-QKT---GL-DSPTGIDFSDITANSFTVHWIAPR-  210 (368)
T ss_dssp             EEEEC----TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEE-EEC---CC-CCCEEEEEESCCSSEEEEEEECCS-
T ss_pred             EEEcC----CCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeEee-ecC---CC-CCCCccEEEEccCCEEEEEEeCCC-
Confidence            43322    134567899999999999999999999876543221 222   23 378899999889999999999874 


Q ss_pred             cccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCC
Q psy12061        417 IRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP  496 (626)
Q Consensus       417 ~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~  496 (626)
                            +.+.+|.|+|+..+...... ..........+.+.+|.|++.|.|+|+|.|..|.|+.+.. ...    .++.+
T Consensus       211 ------~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~-~~~----t~p~~  278 (368)
T 1fnf_A          211 ------ATITGYRIRHHPEHFSGRPR-EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-QQS----TVSDV  278 (368)
T ss_dssp             ------SCCSEEEEEEECSCCSSCCE-EEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE-EEE----CCCCS
T ss_pred             ------CCcCEEEEEEecCCCCCCcc-EEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc-ccc----CCCCC
Confidence                  45889999998766533222 2233455567999999999999999999999998876532 222    23457


Q ss_pred             CceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEec
Q psy12061        497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN  576 (626)
Q Consensus       497 p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~  576 (626)
                      |.++.+...+.+++.|+|+  ++.   +.+.+|.|+|+..++...  ........+.+.+.+.+|.|++.|.|+|+|+|.
T Consensus       279 P~~l~~~~~~~~sv~l~W~--~p~---~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~  351 (368)
T 1fnf_A          279 PRDLEVVAATPTSLLISWD--APA---VTVRYYRITYGETGGNSP--VQEFTVPGSKSTATISGLKPGVDYTITVYAVTG  351 (368)
T ss_dssp             CEEEEEEEEETTEEEEEEE--CCS---SCCSEEEEEEEETTCCSC--CEEEEEETTCCEEEECSCCTTCCEEEEEEEECC
T ss_pred             CCeeEEEecCCCEEEEEee--CCC---CccceEEEEEEECCCCCc--cEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCC
Confidence            8899998889999999999  443   248899999876654321  223445667889999999999999999999999


Q ss_pred             CCCCCCCCCcEEEe
Q psy12061        577 GGDGRMSSPAITFQ  590 (626)
Q Consensus       577 ~G~g~~s~~~~~~~  590 (626)
                      .|.|++|+..+.++
T Consensus       352 ~G~g~~s~~~~~i~  365 (368)
T 1fnf_A          352 RGDSPASSKPISIN  365 (368)
T ss_dssp             CSSSCCBCCCEEEE
T ss_pred             CCcCcccCceeeee
Confidence            99999987555443

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=100.00  E-value=7.2e-37  Score=300.21  Aligned_cols=357  Identities=18%  Similarity=0.257  Sum_probs=268.6

Q ss_pred             CCCCCCceEEEEEecc-ceEEEEecCCCCCCcccEEEEEEeecCCCC--ceEeecceeeeeeeccCCceeEEEEeeccCC
Q psy12061        179 PPGLPGGVQVVEVHKT-SATIQWTDGATNGRPITHYKIIARTNWNST--WFNVSEHVIGKEVDRYTGRKEASIENVLVPW  255 (626)
Q Consensus       179 ~P~~p~~~~~~~~~~~-~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  255 (626)
                      |+.+|.++++...+.. ++.|+|+++..  ..+.+|.|+++......  +....  .       ......+.+.+ |.++
T Consensus         2 P~~~P~~l~~~~~~~~~sv~l~W~~~~~--~~~~~Y~v~~~~~~~~~~~~~~~~--~-------~~~~~~~~i~~-L~p~   69 (375)
T 3t1w_A            2 PLSPPTNLHLEANPDTGVLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEEV--V-------HADQSSCTFDN-LSPG   69 (375)
T ss_dssp             CCCCCEEEEEEEETTTTEEEEEEECCSC--SSCCEEEEEEEETTCTTSCCEEEE--E-------ETTCCEEEECC-CCTT
T ss_pred             CCCCCCccEEEecCCCeEEEEEEeCCCC--CCeeeEEEEEEECCCCCCcceeEE--c-------CCCccEEEEcC-CcCC
Confidence            6889999999998888 99999998754  35889999998865422  21110  0       02334566655 9999


Q ss_pred             ceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcc
Q psy12061        256 STYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF  335 (626)
Q Consensus       256 ~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~  335 (626)
                      +.|.|+|+|.|..|.+.+..    ..+....|  +|.++.+...+.+++.|+|+++.    ++.+.+|.|+|+..+....
T Consensus        70 t~Y~~~V~a~~~~g~s~~~~----~~~~~~~p--~p~~l~~~~~~~~si~l~W~~~~----~~~i~~Y~v~~~~~~~~~~  139 (375)
T 3t1w_A           70 LEYNVSVYTVKDDKESVPIS----DTIIPEVP--QLTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIP  139 (375)
T ss_dssp             CCEEEEEEEEETTEECCCEE----EEECCCCC--CCSCCEEECCCSSEEEEECCCCC----CTTEEEEEEEEEESSSCCS
T ss_pred             CEEEEEEEEEcCCCCCCcEE----eeEcCCCC--CCceEEEEecCCCeEEEEEECCC----CCCceEEEEEEEECCCCCc
Confidence            99999999999988765433    22333344  47889998889999999999832    4678999999998764322


Q ss_pred             eeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeecc
Q psy12061        336 QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE  415 (626)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~  415 (626)
                      ......   ......+.+.+|.|++.|.|+|+|.|..|.|.++.. ...+   .|+ +|.++.+...+.+++.|+|+++.
T Consensus       140 ~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~-~~~t---~~~-~p~~l~~~~~~~~si~l~W~~p~  211 (375)
T 3t1w_A          140 IFEDFV---DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL-TQQT---AVP-PPTDLRFTNIGPDTMRVTWAPPP  211 (375)
T ss_dssp             CEEEEE---CTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE-EEEC---CCC-CCEEEEEESCCSSCEEEEEECCS
T ss_pred             eeEEEc---CCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee-eeec---CCC-CCceeEEEecccCEEEEEEcCCC
Confidence            211111   123456789999999999999999999998887663 3444   333 78899999889999999999874


Q ss_pred             ccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCC
Q psy12061        416 LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK  495 (626)
Q Consensus       416 ~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~  495 (626)
                      .      +.+.+|.|+|+..+...... ..........+.+.+|.|++.|.|+|+|.|..|.|..+. ..+.|    ++.
T Consensus       212 ~------~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t----~p~  279 (375)
T 3t1w_A          212 S------IDLTNFLVRYSPVKNEEDVA-ELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKT----GLD  279 (375)
T ss_dssp             S------CCCCEEEEEEEEGGGTTCCE-EEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC----CCC
T ss_pred             C------CCccEEEEEEEeCCCCCCcE-EEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEec----CCC
Confidence            2      55889999998776443222 223344557799999999999999999999999887653 33444    234


Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.++.+...+.+++.|+|+  +|   .+.+.+|.|+|+..+...  ...........+.+.+.+|.|++.|.|+|+|+|
T Consensus       280 ~P~~l~~~~~~~~sv~l~W~--~p---~~~~~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~  352 (375)
T 3t1w_A          280 SPTGIDFSDITANSFTVHWI--AP---RATITGYRIRHHPEHFSG--RPREDRVPHSRNSITLTNLTPGTEYVVSIVALN  352 (375)
T ss_dssp             CCEEEEEESCCSSCEEEEEE--CC---SSCCSEEEEEEEETTCCS--SCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCccEeeeccCCEEEEEEC--CC---CcceeeEEEEEEECCCCC--cceeEEcCCCccEEEECCCCCCCEEEEEEEEEC
Confidence            78899998889999999999  44   378899999988765421  133455567788999999999999999999999


Q ss_pred             cCCCCCCCC
Q psy12061        576 NGGDGRMSS  584 (626)
Q Consensus       576 ~~G~g~~s~  584 (626)
                      ..|.|++..
T Consensus       353 ~~G~s~p~s  361 (375)
T 3t1w_A          353 GREESPLLI  361 (375)
T ss_dssp             TTEECCCEE
T ss_pred             CCCCCCcee
Confidence            999998663

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.9e-35  Score=292.14  Aligned_cols=367  Identities=15%  Similarity=0.141  Sum_probs=255.8

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      +.+..+.+|++++|.|.+.+.|.|.  |.|+|+  |..+.......  ..++..    ..+.|.|.+++.+|+|.|+|.|
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~--v~W~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   82 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPE--ITWKRAVDGFTFTEGDKSL--DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA   82 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCE--EEEEETTTTEEECC--CCS--SSSEEEEECSSEEEEEEESCCGGGCEEEEEEE
T ss_pred             cCceEEeCCCeEEEEEEeecccCCe--EEEEeCCCCceeccCcCCC--CCeEEEeccCCcceEEEcccChhhCEEEEEEE
Confidence            5677888899999999999998774  589999  88886532111  234443    3468999999999999999999


Q ss_pred             EeCCCceEEEEEEEEeCCCCCCCceEE-EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee-----
Q psy12061        162 KSTVGKISTKTTVIVEGPPGLPGGVQV-VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK-----  235 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~-----  235 (626)
                      .|..|..+..+.|.|..+|........ .......+.|.|....   .+.  ..+.|.        +.+..+...     
T Consensus        83 ~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g---~p~--~~i~W~--------~~g~~l~~~~~~~~  149 (389)
T 2jll_A           83 ASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS---NPP--ASIHWR--------RDKLVLPAKNTTNL  149 (389)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEE---ESC--CEEEEE--------ETTEESSCTTCTTE
T ss_pred             EeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEe---cCC--CeEEEE--------ECCccCCcccCceE
Confidence            999999999999999887753322222 2233445566664311   111  122222        211111000     


Q ss_pred             eeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCC
Q psy12061        236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREK  315 (626)
Q Consensus       236 ~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~  315 (626)
                      ..........+.+.+ +.+.+.|.|+|.|.|..|.......   . .. ..++.+|.++.+......++.|.|.+ +...
T Consensus       150 ~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~N~~G~~~~~~~---l-~v-~~~P~~P~~~~~~~~~~~~~~l~w~~-p~~~  222 (389)
T 2jll_A          150 KTYSTGRKMILEIAP-TSDNDFGRYNCTATNHIGTRFQEYI---L-AL-ADVPSSPYGVKIIELSQTTAKVSFNK-PDSH  222 (389)
T ss_dssp             EEEECSSCEEEEECC-CSTTSSEEEEEEEEETTEEEEEEEE---E-EE-CCCCCCCEEEEEEEECSSCEEEEEEC-CSCC
T ss_pred             EEeccCCEEEEEECC-CChhhCEEEEEEEEcCCCcEEEEEE---E-Ee-cCCCCCCcceEEeeccCCEEEEEEeC-CCCC
Confidence            000001223456655 9999999999999999997532211   1 11 22335777788777778899999997 2344


Q ss_pred             cccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCC
Q psy12061        316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ  395 (626)
Q Consensus       316 ~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~  395 (626)
                      .+.++..|.|+|+..+...|......    .....+.+.+|.+++.|.|+|.|.|..|.+.+|....+.+.+..|+.+| 
T Consensus       223 ~g~pi~~y~v~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p-  297 (389)
T 2jll_A          223 GGVPIHHYQVDVKEVASEIWKIVRSH----GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-  297 (389)
T ss_dssp             TTSCEEEEEEEEEETTCSCCEEEECS----TTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCC-
T ss_pred             CCcceEEEEEEEEECCCcccEEeecc----CCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCC-
Confidence            55678899999999887777643321    2335678999999999999999999999999999988888777666567 


Q ss_pred             ceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCC
Q psy12061        396 GVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA  475 (626)
Q Consensus       396 ~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~  475 (626)
                      .+.....+.+++.|+|+++.+.    ++.+.+|.|+|+..+...+.... ........+.+.+|+|++.|.|+|+|.|..
T Consensus       298 ~~~~~~~~~~~v~l~W~~p~~~----~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~  372 (389)
T 2jll_A          298 SIHGQPSSGKSFKLSITKQDDG----GAPILEYIVKYRSKDKEDQWLEK-KVQGNKDHIILEHLQWTMGYEVQITAANRL  372 (389)
T ss_dssp             CEEEEEETTTEEEEEECCCCCC----SSCCCEEEEEEEC-----CCBCC-EECTTCCEEEECSCCTTCEEEEEEEEEC-C
T ss_pred             ccccccCcCCEEEEEEECCCCC----CCcccEEEEEEEeCCCCcceeEe-eccCCcceEEeCCcCCCCEEEEEEEEEcCC
Confidence            5667778899999999987643    36799999999875554433221 223455679999999999999999999999


Q ss_pred             CCCCCCccEEEeec
Q psy12061        476 GEGPESERYLERTY  489 (626)
Q Consensus       476 g~s~~s~~~~~~t~  489 (626)
                      |.|++|.. .++|.
T Consensus       373 G~s~~s~~-~~~T~  385 (389)
T 2jll_A          373 GYSEPTVY-EFSMP  385 (389)
T ss_dssp             CBCCCEEE-EEECC
T ss_pred             cCCCceee-EecCC
Confidence            99998864 66665

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=280.09  Aligned_cols=268  Identities=25%  Similarity=0.355  Sum_probs=220.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEc--cCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIF--ENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~--~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+ .++.+.  .++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        16 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   95 (305)
T 2nzi_A           16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE   95 (305)
T ss_dssp             ECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEE
Confidence            578999999999999999999999999998754 455543  344  799999999999999999999999888888999


Q ss_pred             EEeCCceee----eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEee-c
Q psy12061         77 VLHGPSYYE----QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITN-A  149 (626)
Q Consensus        77 v~~~p~~~~----~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~-~  149 (626)
                      |..+|.+..    ..+....+..|++++|.|.+.+.|.|  .+.|++++..+.....     ..+..  ....|.|.+ +
T Consensus        96 V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~  168 (305)
T 2nzi_A           96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLIDNNGH-----YQVIVTRSFTSLVFPNGV  168 (305)
T ss_dssp             ECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCC--EEEEEESSSBCCSSSS-----CEEEECSSEEEEEETTCC
T ss_pred             EecCCccCCCccccccccEEecCCCEEEEEEEECCCCCC--EEEEEECCEECCCCCc-----EEEEEcCCceEEEEecCC
Confidence            977665432    12356788999999999999999887  5689999988865421     11211  346899999 9


Q ss_pred             CCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCC-CCCCcccEEEEEEeecCCCCceEe
Q psy12061        150 SFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNV  228 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~w~~~  228 (626)
                      ...|+|.|+|.|.|..|..+..+.|.|..+|.+|.++.+......++.|+|.+|. +++.++..|.++++......|...
T Consensus       169 ~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~  248 (305)
T 2nzi_A          169 ERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRV  248 (305)
T ss_dssp             CSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEE
T ss_pred             ccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEEC
Confidence            9999999999999999999999999999999999999998889999999999864 455689999999999888899876


Q ss_pred             ecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCC
Q psy12061        229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP  287 (626)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p  287 (626)
                      ....          ...+.+.+ |.+++.|.|+|.|.|..|.+.++..+..+.+.+..|
T Consensus       249 ~~~~----------~~~~~i~~-l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p  296 (305)
T 2nzi_A          249 GQAR----------ETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKT  296 (305)
T ss_dssp             EEES----------SSEEEECS-CCSSCEEEEEEEEEETTEECCCCCCCCCEECCC---
T ss_pred             cccc----------CceEEecC-CCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCccc
Confidence            5431          33566655 999999999999999999999998877676655544

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=100.00  E-value=5.2e-36  Score=296.07  Aligned_cols=376  Identities=13%  Similarity=0.105  Sum_probs=187.5

Q ss_pred             CCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEE
Q psy12061        180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE  259 (626)
Q Consensus       180 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~  259 (626)
                      ..+|.++++... ..++.|+|+++.++..++. |.|+++..+...|..........     .....+... +|.++..|.
T Consensus         8 l~~P~nv~~~~~-~~~~~L~W~p~~~~~~~i~-Y~V~y~~~~~~~W~~~~~c~~~~-----~~~~~~t~~-~l~~~~~Y~   79 (414)
T 3se4_A            8 LKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQNIT-----STKCNFSSL-KLNVYEEIK   79 (414)
T ss_dssp             ---CCCCCEEEE-TTEEEEC----------CE-EEEEEEESSCCCCEEEEEEEEES-----CSCEECCSS-CCCTTSCEE
T ss_pred             CCCCceeEEEEE-CCceEEEEcCCCCCCCCeE-EEEEEEECCCCCcEECcCccCCC-----CCEEECCcc-cccCCCcEE
Confidence            456889999776 4678999999877666776 99999987778897653221110     111122222 389999999


Q ss_pred             EEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCc-----ccCcceEEEEEEecCCCc
Q psy12061        260 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ-----NAPNIYYKIFWRKKNDTE  334 (626)
Q Consensus       260 ~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~-----~~~~~~y~i~~~~~~~~~  334 (626)
                      |||+|.| .+.+.++... .+......+..+|. +.+.... +++.|+|+ +....+     ++.+.+|+|.|+..+...
T Consensus        80 ~rV~A~n-~~~S~~s~~~-~~~~~~~~~~~pP~-v~~~~~~-~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~  154 (414)
T 3se4_A           80 LRIRAEK-ENTSSWYEVD-SFTPFRKAQIGPPE-VHLEAED-KAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGV  154 (414)
T ss_dssp             EEEEEEE-TTEEEEEECC-CBCHHHHCCCCCCE-EEEEECS-SCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCC
T ss_pred             EEEEEee-CCcCCCEecC-ceeecccceeCCCe-EEEEEcC-CEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCc
Confidence            9999999 6555443221 22221122334554 6665544 68999999 432321     356889999999887544


Q ss_pred             ceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecC--CCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEee
Q psy12061        335 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND--VGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWN  412 (626)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~  412 (626)
                      ....  .    .....+.+.+|.|++.|.|+|+|.|.  .|.|.+|....+.|.++.|..+|.++.+...+ .++.|+|+
T Consensus       155 ~~~~--~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~  227 (414)
T 3se4_A          155 EERI--E----NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWD  227 (414)
T ss_dssp             EEEE--E----EECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEE
T ss_pred             eEEE--e----cCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEec-CCeEEEEC
Confidence            2221  1    12345789999999999999999994  68888898888888887777789999988665 67999999


Q ss_pred             eccccccccceeeEEEEEEEEec--------CCCccceEEEEecCccceEEEe-CCccCceEEEEEEEeeCCCCCCCCcc
Q psy12061        413 PIELIRENIRGRLIGHRIKYWKE--------DNPEETAVYYLSRTTRNWALIV-GLQPDTKYYVKVMAYNNAGEGPESER  483 (626)
Q Consensus       413 ~~~~~~~~~~~~i~~Y~v~~~~~--------~~~~~~~~~~~~~~~~~~~~i~-~L~p~t~Y~v~V~a~~~~g~s~~s~~  483 (626)
                      ++..        ..+|.|+|+..        +...+.............+.+. +|.+++.|.|+|+|.|..|.|++|..
T Consensus       228 pp~~--------~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~  299 (414)
T 3se4_A          228 YTYA--------NMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE  299 (414)
T ss_dssp             CSSS--------SCEEEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCC
T ss_pred             CCCC--------CeEEEEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCccccccc
Confidence            9641        23999999863        1111111000011223456676 69999999999999999999999998


Q ss_pred             EEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCC------CceeeEEEEEEEeccCCccccceeeecCccceEE
Q psy12061        484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE------EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDAD  557 (626)
Q Consensus       484 ~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~------~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (626)
                      ..|.|.++.+++||. +.+... .+++.|.|++  |...+      +.+.+|.|.|+..+....   ..  ...+.+.+.
T Consensus       300 ~~~~t~~~~~~~pP~-l~~~~~-~~si~v~W~~--P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~---~~--~~~~~~~~~  370 (414)
T 3se4_A          300 IKFDTEIQAFLLPPV-FNIRSL-SDSFHIYIGA--PKQSGNTPVIQDYPLIYEIIFWENTSNAE---RK--IIEKKTDVT  370 (414)
T ss_dssp             EEEETTCC------------------------------------------------------------------------
T ss_pred             ccccchhccccCCCe-EEEEEC-CCeEEEEEEC--CCCccccchhhcCCeEEEEEEEECCCCce---EE--EEecCCeEE
Confidence            999999998888887 887754 5799999995  44333      467899999887654321   11  124667899


Q ss_pred             ecCCCCCceEEEEEEEEec----CCCCCCCCCcEEEeecc
Q psy12061        558 IVDLSPGKRYHMRVLAFSN----GGDGRMSSPAITFQMGE  593 (626)
Q Consensus       558 l~~L~p~~~Y~~~V~a~~~----~G~g~~s~~~~~~~~~~  593 (626)
                      |.+|+|++.|.|+|+|++.    .|.|++|.+ +++++.+
T Consensus       371 l~~L~p~t~Y~~~V~A~~~~~~~~g~g~~S~~-~~~~T~~  409 (414)
T 3se4_A          371 VPNLKPLTVYCVKARAHTMDEKLNKSSVFSDA-VCEKTKP  409 (414)
T ss_dssp             ----------------------------------------
T ss_pred             eCCCCCCCeEEEEEEEEecccccCCCCCCCCC-EeEEeCC
Confidence            9999999999999999993    589999965 5566643

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=286.36  Aligned_cols=454  Identities=15%  Similarity=0.175  Sum_probs=289.0

Q ss_pred             CCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCC-CceEEe--cCCcEEEEEEeccc--CCcc-eeEEEeeC-CEE
Q psy12061         51 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIA--AHRNLQLRCSAHTE--ELLD-VAYIWTHN-GVR  123 (626)
Q Consensus        51 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~-~~~~v~--~g~~~~l~C~~~~~--p~p~-~~i~W~~~-~~~  123 (626)
                      ..++.|.+.| +.|..|..=......+...|    .+| .++.+.  ..+.++|.+....+  ..+. ..|.|... +..
T Consensus       131 d~~c~g~~~C-c~n~cG~~C~~P~~~~~~~P----~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~Y~V~~r~~~g~~  205 (680)
T 1zlg_A          131 DNECSGVKKC-CSNGCGHTCQVPKTLYKGVP----LKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIH  205 (680)
T ss_pred             cccCCCcccc-ccccccccccccceeeeccc----ccccccceEEeccCceEEEEEeCCCCCCCCCEEEEEEEEECCCCC
Confidence            3567888988 55666653222222232222    234 444443  45668888775321  1121 22334332 210


Q ss_pred             eccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEEEEEEeCCCc---eEEEEEEEEe---CCCCCCCceEEEEE--ecc
Q psy12061        124 IGNMDLNELETPNIN-IDGGLLEITNASFADAGEYECVVKSTVGK---ISTKTTVIVE---GPPGLPGGVQVVEV--HKT  194 (626)
Q Consensus       124 ~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~---~~~~~~l~v~---~~P~~p~~~~~~~~--~~~  194 (626)
                      .........  ..+. .....+.|.++.....+.|++.|.|..|.   .+....+...   .+|.+|.++++...  +.+
T Consensus       206 ~~~~~~~~w--~~v~~~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~  283 (680)
T 1zlg_A          206 PSEDDATHW--QTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSD  283 (680)
T ss_pred             cCccccCce--EEEEecCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCC
Confidence            000000000  1111 23457889999999999999999998882   2223333332   57889999999877  777


Q ss_pred             ---ceEEEEecCCCCCCcccEEEEEEeec-C------CCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEE
Q psy12061        195 ---SATIQWTDGATNGRPITHYKIIARTN-W------NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIA  264 (626)
Q Consensus       195 ---~~~l~W~~~~~~~~~~~~y~v~~~~~-~------~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a  264 (626)
                         ++.|+|++|...+.++.+|.|+++.. .      ...|......         .....+.+.+ |.+++.|.|+|.|
T Consensus       284 g~~sv~l~W~pP~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~l~~-L~p~t~Y~~~V~A  353 (680)
T 1zlg_A          284 GSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTD---------GFQNSVILEK-LQPDCDYVVELQA  353 (680)
T ss_pred             CceEEEEEecCCCCCCCceeEEEEEEEecccccccCCccceEEEEEc---------CCeeEEEeCC-CCCCCEEEEEEEE
Confidence               99999998876678899999999832 1      1234432211         1223555555 9999999999999


Q ss_pred             ecCCccCCCCCCC--CcccCCCCCCCCCCceeEeecCCcCeEEE-----------EEeeCCCCCcccCcceEEEEEEecC
Q psy12061        265 GNELGYGEPSSPS--PQYNTPADKPYQAPSRIGGGGGKIGDLSI-----------SWEPLPREKQNAPNIYYKIFWRKKN  331 (626)
Q Consensus       265 ~n~~g~~~~s~~~--~~~~~~~~~p~~~p~~~~~~~~~~~~v~l-----------~W~~~~~~~~~~~~~~y~i~~~~~~  331 (626)
                      .|..|.+..+...  ..+.+....|.  |.++.+...+.+++.|           .|.++.  . ...+.+|+|.|+..+
T Consensus       354 ~n~~G~g~~S~~~~~v~~~T~~~~P~--p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~--~-~~~~~~y~v~w~~~~  428 (680)
T 1zlg_A          354 ITYWGQTRLKSAKVSLHFTSTHATNN--KEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPF--Y-QDGQLQVKVYWKKTE  428 (680)
T ss_pred             EECCCcCCCCCCceeEEEECCCCCCC--ccccccccccCccccccccccCCCccccccCCc--c-cCCcceEEEEEeCCC
Confidence            9999998776652  24556666553  7788887777788876           999842  2 234668899888665


Q ss_pred             CCc-------ceeee---------eeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEcc---------
Q psy12061        332 DTE-------FQSET---------LKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA---------  386 (626)
Q Consensus       332 ~~~-------~~~~~---------~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~---------  386 (626)
                      ...       |....         ...........+.+.+|.|++.|.|+|+|.|..|.+... ...+.+.         
T Consensus       429 ~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~-~~~f~T~~~~~~~~~~  507 (680)
T 1zlg_A          429 DPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAE-AVFFTTPPCSALKGKS  507 (680)
T ss_pred             CCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCcc-ccceeCCCccccccCC
Confidence            321       10000         000011234567899999999999999999999965421 1111111         


Q ss_pred             --------CCCCC-----CCCCc----eEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc---c-eEEE
Q psy12061        387 --------EDMPQ-----VAPQG----VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE---T-AVYY  445 (626)
Q Consensus       387 --------~~~p~-----~~p~~----~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~---~-~~~~  445 (626)
                              ...|.     .+|.+    +.+...+.+ +.|+|++|....   +|.|.+|.|+|+.......   . ....
T Consensus       508 ~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP~~~~---ng~I~gY~V~y~~~~~~~~~~~~~~~~~  583 (680)
T 1zlg_A          508 HKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT-GHFSWKMAKANL---YQPMTGFQVTWAEVTTESRQNSLPNSII  583 (680)
T ss_pred             ccccccCCCCccccccccCCccccceeEEEeccCce-EEEEecCCCCCC---CCCceeEEEEEEEccCCCccccccceee
Confidence                    11121     46777    566656555 999999986432   4789999999987643321   0 0000


Q ss_pred             ----EecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCC
Q psy12061        446 ----LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF  521 (626)
Q Consensus       446 ----~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~  521 (626)
                          .......++.|.+|+|++.|.|+|+|.|..|.|+. ....++|...+|. +|..+.+....    .|+|++ +...
T Consensus       584 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P~-~P~~l~v~~~~----~l~W~p-P~~~  656 (680)
T 1zlg_A          584 SQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELPPS-SAHRSHLKHRH----PHHYKP-SPER  656 (680)
T ss_pred             ecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCCCC-CCCCCeEEecc----ceeECC-CCCC
Confidence                11234567999999999999999999999999988 7788899887665 67778776543    899995 3344


Q ss_pred             CCCceeeEEEEEEEecc
Q psy12061        522 EEEPIIGYKVRVWEVDQ  538 (626)
Q Consensus       522 ~~~~i~~Y~i~~~~~~~  538 (626)
                      .+.+|.+|.+.|.....
T Consensus       657 ~G~~I~~~~~~~~~~~~  673 (680)
T 1zlg_A          657 YGKPIPNPLLGLDSTRT  673 (680)
T ss_pred             CCCccceeeEEEeeccc
Confidence            56788899998865443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.3e-31  Score=275.34  Aligned_cols=524  Identities=15%  Similarity=0.174  Sum_probs=287.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..|....++.+...   ++|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        17 v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~   96 (570)
T 3b43_A           17 AAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK   96 (570)
T ss_dssp             ECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEEC
Confidence            56899999999999999999999999999987777776543   369999999999999999999999998888888775


Q ss_pred             e--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         79 H--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        79 ~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      .  .|+.+...+.+..+..|++++|.|.+.+.|.|  ++.|+|||..+......   ..........|.|.++..+|+|.
T Consensus        97 ~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~  171 (570)
T 3b43_A           97 ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPL--QVSWYKDGELLKDDANL---QTSFIHNVATLQILQTDQSHVGQ  171 (570)
T ss_dssp             CCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSC--EEEEEETTEECCCCSSE---EEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCCCCCcccccCCCeEecCCCeEEEEEEEccCCCC--EEEEEECCEECcCCCCE---EEEEECCEEEEEECcCChHHCEE
Confidence            4  23333345677888999999999999998876  56999999998754200   00111234689999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCCCCCCCceEE-----EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecc
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGPPGLPGGVQV-----VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH  231 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~-----~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~  231 (626)
                      |+|.|.|..|..+..+.|.+.....+|. +..     .......+.|.|....   .+..  .+.        |.+.+..
T Consensus       172 Y~C~a~n~~g~~~~~~~l~v~~~~~pp~-~~~~p~~~~v~~G~~~~l~C~~~g---~p~p--~i~--------W~k~g~~  237 (570)
T 3b43_A          172 YNCSASNPLGTASSSAKLTLSEHEVPPF-FDLKPVSVDLALGESGTFKCHVTG---TAPI--KIT--------WAKDNRE  237 (570)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCCCCCE-EEECCCCBCCBSBSCEEEEEEEES---SSCC--EEE--------EEETTEE
T ss_pred             EEEEEEeCCcEEEEEEEEEEcCCCCCCc-cccCCceeEecCCCeEEEEEEEEE---CCCC--EEE--------EEECCEE
Confidence            9999999999998888888876443331 111     1122344555555321   1111  122        2222111


Q ss_pred             eeeee---eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEE
Q psy12061        232 VIGKE---VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISW  308 (626)
Q Consensus       232 ~~~~~---~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W  308 (626)
                      +....   .........+.+.+ +...+.+.|+|.|.|..|....+... .+..++......+....+.  ....+.|..
T Consensus       238 i~~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~a~N~~g~~~~~~~l-~V~~~p~~~~~~~~~~~v~--~g~~~~l~C  313 (570)
T 3b43_A          238 IRPGGNYKMTLVENTATLTVLK-VTKGDAGQYTCYASNVAGKDSCSAQL-GVQEPPRFIKKLEPSRIVK--QDEHTRYEC  313 (570)
T ss_dssp             CCTTSSEEEEEETTEEEEEESS-BCGGGCEEEEEEEEETTEEEEEEEEE-CCBCCCEEEECCCSBCCEE--SSCEEEEEE
T ss_pred             CcCCCcEEEEEECCEEEEEEcc-cCcccCEEEEEEEECCCCcEEEEEEE-EeecCCcccccCCCccEEc--CCCcEEEEE
Confidence            11000   00001223455655 89999999999999998864322211 1111100000000011111  224455655


Q ss_pred             eeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCC
Q psy12061        309 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED  388 (626)
Q Consensus       309 ~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  388 (626)
                      ...    + .+.  -.+.|.+.+..--...............+.+.++.......|+|.|.|..|....+..+.+...+.
T Consensus       314 ~~~----g-~P~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  386 (570)
T 3b43_A          314 KIG----G-SPE--IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV  386 (570)
T ss_dssp             EEE----S-SSS--CEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCE
T ss_pred             EEe----e-CCC--CEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCe
Confidence            541    1 111  156676655110000000000011234566778887778889999999998754444443332221


Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC--ccceEEEEecCccceEEEeCCccCceEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP--EETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      ... .|..+.+  .....+.|.......+.         -.+.|.+.+..  ...............+.|.++.....-.
T Consensus       387 ~~~-~~~~~~~--~~G~~v~l~C~~~g~P~---------p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~  454 (570)
T 3b43_A          387 FRK-KPHPVET--LKGADVHLECELQGTPP---------FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE  454 (570)
T ss_dssp             ECS-CCCCEEE--CTTCCEEEEEEEESSSS---------CCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             eec-CCCceee--cCCCEEEEEEEEecCCC---------CEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEE
Confidence            111 2333322  22334444443221110         11233222211  0011111112222346788888777777


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEE----EeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCc-
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH----IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS-  541 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~----~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~-  541 (626)
                      ++..|.|..|....+..+.+..       +|..+.    ........+.|.-.-  ....  .+   .|.|+..+.... 
T Consensus       455 Y~C~A~N~~G~~~~~~~l~v~~-------~P~~~~~~~~~~~~~g~~~~l~c~~--~g~p--~~---~v~W~k~~~~~~~  520 (570)
T 3b43_A          455 YQCKASNDVGSDTCVGSITLKA-------PPRFVKKLSDISTVVGEEVQLQATI--EGAE--PI---SVAWFKDKGEIVR  520 (570)
T ss_dssp             EEEEEECSSCEEEEEEEEEECC-------CCEEEECCCCBCCBTTCCEEEEEEE--ESCS--SC---CCEEEETTEECCC
T ss_pred             EEEEEEECCCeEEEEEEEEecc-------CCcccccCCCceecCCCeEEEEEEE--ecCC--CC---EEEEEeCCeEecc
Confidence            7888999988643222222211       221111    011122334443331  0000  00   122222221110 


Q ss_pred             -cccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCC
Q psy12061        542 -RANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGR  581 (626)
Q Consensus       542 -~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~  581 (626)
                       .....+..........|.++.+...=.+...|.|..|...
T Consensus       521 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  561 (570)
T 3b43_A          521 ESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE  561 (570)
T ss_dssp             CTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEE
T ss_pred             CCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEE
Confidence             0011112223445677888888777777888999988654

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=100.00  E-value=8.4e-33  Score=260.76  Aligned_cols=268  Identities=15%  Similarity=0.203  Sum_probs=204.3

Q ss_pred             CCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCC
Q psy12061        299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES  378 (626)
Q Consensus       299 ~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s  378 (626)
                      .+.+++.|.|+++++...++.+.+|.|+|+..+.... ....      .  ...+.+|.|++.|.|+|.|.|..|.|.++
T Consensus        20 ~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~-~~~~------~--~~~~~~l~p~t~Y~~~V~A~n~~G~s~~s   90 (290)
T 3l5i_A           20 QGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-NYTV------N--ATKLTVNLTNDRYLATLTVRNLVGKSDAA   90 (290)
T ss_dssp             TTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCE-EEEE------S--SSEEEEEECSSCEEEEEEEEESSCBCCCE
T ss_pred             CCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCce-eEec------C--CcEEEEEcCCceEEEEEEEEcCCCCCCCc
Confidence            3468999999986666788999999999998764322 1111      1  12356788999999999999999998765


Q ss_pred             ccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc--ceEEEEecCccceEEE
Q psy12061        379 EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE--TAVYYLSRTTRNWALI  456 (626)
Q Consensus       379 ~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~~i  456 (626)
                      ... ..+....|+.+|.++.+...+ +++.|+|+++..       .+.+|.|+|+.......  .............+.+
T Consensus        91 ~~~-~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~-------~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (290)
T 3l5i_A           91 VLT-IPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE-------SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLR  161 (290)
T ss_dssp             EEE-ECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS-------CCCEEEEEEEEECSSSCCCCEEEEEETTCSEEECC
T ss_pred             eEE-eecccccCCCccceeEEEeCC-CeEEEEEeCCCC-------CCCcEEEEEEECCCCCCCCcCeEEccCCCcceEEe
Confidence            322 222222445477778777654 799999999863       48899999987765532  1122233455566788


Q ss_pred             eCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEe
Q psy12061        457 VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEV  536 (626)
Q Consensus       457 ~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~  536 (626)
                      .+|+|++.|.|+|+|+|..|.|+ +..+.+.|.+..|..+| .+.+...+.+++.|+|+++++.+.+|.|.+|.|+|+..
T Consensus       162 ~~L~p~t~Y~~~V~A~n~~g~g~-~~~~~~~t~~~~P~~~p-~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~  239 (290)
T 3l5i_A          162 GNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI  239 (290)
T ss_dssp             SCCCTTCEEEEEEEEEETTEECC-CEEEEEESSCCCCSSCC-CEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEET
T ss_pred             cCcCCccEEEEEEEEEeCCcccc-cEEEEeEccccCCCCCC-eeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeC
Confidence            99999999999999999999888 45566778888887666 77788889999999999766777899999999998876


Q ss_pred             ccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        537 DQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      ++.    ..........+++.|.+|.|++.|.|+|+|+|.+| |++| +.+.|+|.
T Consensus       240 ~~~----~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s-~~~~~~T~  289 (290)
T 3l5i_A          240 IGN----ETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDG-PEFTFTTP  289 (290)
T ss_dssp             TSC----CEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEEC-CCEEEECC
T ss_pred             CCC----eEEEEeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCC-CceEeecC
Confidence            543    23445577888999999999999999999999999 8777 44667764

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2e-28  Score=258.07  Aligned_cols=499  Identities=15%  Similarity=0.127  Sum_probs=302.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   79 (626)
                      +.+|+.++|.|.+.| |.|.|.|+|||..+..+.|+.+.. +++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus       123 v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  201 (642)
T 1e07_A          123 VEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY  201 (642)
T ss_pred             EecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEe
Confidence            357899999999999 899999999999998888887765 45799999999999999999999988743 457899987


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      +|......|....+.+|++++|.|.+.+.|.|  .+.|++||..+..              +..|.|.+++.+|+|.|+|
T Consensus       202 ~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~--~i~W~~~g~~i~~--------------~~~L~i~~~~~~d~G~Y~C  265 (642)
T 1e07_A          202 GPDAPTISPLNTSYRSGENLNLSCHAASNPPA--QYSWFVNGTFQQS--------------TQELFIPNITVNNSGSYTC  265 (642)
T ss_pred             CCCCcEEecCCcccccCCEEEEEEEcCCCCCc--EEEEEECCeEccc--------------CCceEEecccccCCeEEEE
Confidence            77665556777889999999999999888876  5699999988742              3579999999999999999


Q ss_pred             EEEeCCCceEE--EEEEEEeCCCCCCCce---EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceee
Q psy12061        160 VVKSTVGKIST--KTTVIVEGPPGLPGGV---QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG  234 (626)
Q Consensus       160 ~a~n~~g~~~~--~~~l~v~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~  234 (626)
                      .|.|..|....  .+.|.|..+|..|...   .........+.|.|.....   +.   .+.|..++.        .+..
T Consensus       266 ~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~---p~---~v~W~~~g~--------~l~~  331 (642)
T 1e07_A          266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ---NT---TYLWWVNNQ--------SLPV  331 (642)
T ss_pred             EEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCC---Cc---cEEEEECCc--------cCCC
Confidence            99999887644  4566676655444210   0112234568888885422   21   233333221        1110


Q ss_pred             ee-eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCC
Q psy12061        235 KE-VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPR  313 (626)
Q Consensus       235 ~~-~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~  313 (626)
                      .. .........+.+.+ +...+.+.|+|.|.|..|..........+...+..+...|....+..  ...+.|.....  
T Consensus       332 ~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~--g~~~~l~C~~~--  406 (642)
T 1e07_A          332 SPRLQLSNDNRTLTLLS-VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRP--GVNLSLSCHAA--  406 (642)
T ss_pred             cCCEEEeCCCCEEEEec-cCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecC--CCcEEEEEEcC--
Confidence            00 00001223566666 89999999999999998854322111122222222222333333332  34566666541  


Q ss_pred             CCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCC
Q psy12061        314 EKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVA  393 (626)
Q Consensus       314 ~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~  393 (626)
                        +.. ..  .+.|.+.+..      ..     ....+.+.++.+.....|+|.|.|..|....+..+.+..... +. +
T Consensus       407 --g~p-~~--~i~W~~~g~~------~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~-~~-~  468 (642)
T 1e07_A          407 --SNP-PA--QYSWLIDGNI------QQ-----HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE-LP-K  468 (642)
T ss_pred             --ccC-CC--eEEEEECCEE------cC-----CCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEecc-CC-C
Confidence              111 11  5677665511      00     113466788888888899999999998766555444433221 11 2


Q ss_pred             CCce---EEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEE
Q psy12061        394 PQGV---FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVM  470 (626)
Q Consensus       394 p~~~---~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~  470 (626)
                      |...   .........+.|.+.....          .-.+.|+..+.................+.|.++.......++..
T Consensus       469 p~i~~~~~~~v~~g~~v~l~C~~~~~----------~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  538 (642)
T 1e07_A          469 PSISSNNSKPVEDKDAVAFTCEPEAQ----------NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCG  538 (642)
T ss_pred             ceEecCCceeecCCCeEEEEEECCCC----------CcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEE
Confidence            2110   1112245567777765421          12344444332211111111112234588888888777777888


Q ss_pred             EeeCCCCCCC-CccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeee
Q psy12061        471 AYNNAGEGPE-SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP  549 (626)
Q Consensus       471 a~~~~g~s~~-s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~  549 (626)
                      |.|..|.... +..+.+...+..+...|.+..+  .....+.|...  ....+  ..   .|.|+..+....        
T Consensus       539 a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v--~~g~~~~l~C~--~~g~p--~p---~v~W~~~g~~i~--------  601 (642)
T 1e07_A          539 IQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY--LSGANLNLSCH--SASNP--SP---QYSWRINGIPQQ--------  601 (642)
T ss_pred             eEcCCCCccCCCEEEEEEeCCCcceecCCceeE--EcCCcEEEEEE--eccCC--CC---eEEEEECCEECc--------
Confidence            8898875322 2223333222222222333332  23456677766  21111  11   344443322110        


Q ss_pred             cCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       550 ~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                        ......|.++.+...-.|+..|.|..|....+
T Consensus       602 --~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s  633 (642)
T 1e07_A          602 --HTQVLFIAKITPNNNGTYACFVSNLATGRNNS  633 (642)
T ss_pred             --cCceEEECcccccCCeEEEEEEEecccCccee
Confidence              12357788888888888999999999976544

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.7e-30  Score=268.85  Aligned_cols=342  Identities=18%  Similarity=0.303  Sum_probs=220.4

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc---cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~---~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      .+|+.++|.|.+.|.|+|+|.|+|||..|..+.++...   ..++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus       114 ~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  193 (570)
T 3b43_A          114 TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE  193 (570)
T ss_dssp             ETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcC
Confidence            46999999999999999999999999999876665432   235799999999999999999999999988888888764


Q ss_pred             --CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCE
Q psy12061         80 --GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAG  155 (626)
Q Consensus        80 --~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g  155 (626)
                        .|+.+...|.+..+.+|++++|.|.+.+.|.|  ++.|+|+|..+....     ..++..  ....|.|.+++.+|+|
T Consensus       194 ~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p--~i~W~k~g~~i~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G  266 (570)
T 3b43_A          194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI--KITWAKDNREIRPGG-----NYKMTLVENTATLTVLKVTKGDAG  266 (570)
T ss_dssp             CCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCC--EEEEEETTEECCTTS-----SEEEEEETTEEEEEESSBCGGGCE
T ss_pred             CCCCCccccCCceeEecCCCeEEEEEEEEECCCC--EEEEEECCEECcCCC-----cEEEEEECCEEEEEEcccCcccCE
Confidence              45555556778889999999999999999876  569999999986542     112222  3468999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCCCCCce--EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeeccee
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPGLPGGV--QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI  233 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~--~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~  233 (626)
                      .|+|.|.|..|..+..+.|.|..+|.....+  .........+.|.|...   +.+...  +.        |.+.+..+.
T Consensus       267 ~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~---g~P~p~--v~--------W~k~~~~l~  333 (570)
T 3b43_A          267 QYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG---GSPEIK--VL--------WYKDETEIQ  333 (570)
T ss_dssp             EEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEE---SSSSCE--EE--------EEETTEECC
T ss_pred             EEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEe---eCCCCE--EE--------EeECCEECC
Confidence            9999999999999999999998877421110  00112334455555532   111111  12        222211110


Q ss_pred             ee---eeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEee
Q psy12061        234 GK---EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEP  310 (626)
Q Consensus       234 ~~---~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~  310 (626)
                      ..   ..........+.+.+ +...+.+.|+|.|.|..|....+... .+..++.. ...|..+.+..+  ..+.|....
T Consensus       334 ~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~a~N~~g~~~~~~~l-~V~~~P~~-~~~~~~~~~~~G--~~v~l~C~~  408 (570)
T 3b43_A          334 ESSKFRMSFVESVAVLEMYN-LSVEDSGDYTCEAHNAAGSASSSTSL-KVKEPPVF-RKKPHPVETLKG--ADVHLECEL  408 (570)
T ss_dssp             CSSSEEEEEETTEEEEEEES-CCGGGCEEEEEEEEBTTBCCEEEEEE-CEECCCEE-CSCCCCEEECTT--CCEEEEEEE
T ss_pred             CCCcEEEEEECCEEEEEECC-CCcccCEEEEEEEEeCCCEEEEEEEE-EecCCCee-ecCCCceeecCC--CEEEEEEEE
Confidence            00   000011223456655 99999999999999999865432221 12211111 123334444333  445555554


Q ss_pred             CCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        311 LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       311 ~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                      .    +. +.  -.|.|.+.+..-..........+.....+.+.++.......|.|.|.|..|...
T Consensus       409 ~----g~-P~--p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  467 (570)
T 3b43_A          409 Q----GT-PP--FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT  467 (570)
T ss_dssp             E----SS-SS--CCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             e----cC-CC--CEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            1    11 11  145666655110000000111111234577888888888899999999998654

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=100.00  E-value=5e-33  Score=299.38  Aligned_cols=506  Identities=15%  Similarity=0.166  Sum_probs=276.3

Q ss_pred             CCcEEEccCCCCCCEEEEE--EEEcCCCCc-eeeEEEEEEeCCc-eeeeCCCceEEecCCcEEE--EEEecccCCcceeE
Q psy12061         42 NGNLLISPVSRDDSGIYSC--TATNVHGMD-ESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQL--RCSAHTEELLDVAY  115 (626)
Q Consensus        42 ~g~L~i~~v~~~d~G~Y~C--~a~n~~g~~-~~~~~l~v~~~p~-~~~~~~~~~~v~~g~~~~l--~C~~~~~p~p~~~i  115 (626)
                      +|+|.|....    |. .|  .+.+..+.. .....|.|..... .....++++.+..|+.+.+  .|.+.-... .++.
T Consensus       337 ~G~L~I~~~~----g~-~~~~~~~~~l~~v~~Itg~L~i~~~~~l~~l~~~~nL~~I~g~~~~~~~~~l~~~~n~-~l~~  410 (897)
T 2dtg_E          337 NGSLIINIRG----GN-NLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQ-NLRQ  410 (897)
T ss_dssp             SSCCEECCCC----CS-STHHHHHHHHTTCCEESSCEEEESCTTCSBGGGGTTCCEECCTTCBTTTEEEEEESCT-TCCB
T ss_pred             CcEEEEEEcC----CC-CccHHHHhhccCcEEEeEEEEEEEeccccchhhccCccEEcCeeccCCCEEEEEEecc-Chhh
Confidence            5778887542    21 33  122344444 4456788875333 2234577888888988643  355443222 3444


Q ss_pred             EEeeCCEEeccccCCccCCCeeEec-CCeEEEeecCCC--CCEeEEEEEE-----eCCCceEEEEEEEEeCCCCCCCceE
Q psy12061        116 IWTHNGVRIGNMDLNELETPNINID-GGLLEITNASFA--DAGEYECVVK-----STVGKISTKTTVIVEGPPGLPGGVQ  187 (626)
Q Consensus       116 ~W~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~--d~g~Y~C~a~-----n~~g~~~~~~~l~v~~~P~~p~~~~  187 (626)
                      .|.++.+.+...      .+++.+. +..|-+..+..-  ..|.|.+...     ...|..        ..-...|.+++
T Consensus       411 l~~~~~~~l~i~------~G~v~i~~n~~LC~~~i~~~~~~~g~~~~~~~~di~~~tNgd~--------~~C~~~~~~l~  476 (897)
T 2dtg_E          411 LWDWSKHNLTIT------QGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQ--------ASCENELLKFS  476 (897)
T ss_dssp             SCCTTSCCCBCS------SCEEEEESBTTSCHHHHHHHHHHTTCSSSCCSSSBCSTTBSTT--------CCCSCCBCCCS
T ss_pred             hCccccCceEEc------cCEEEEEeCCcccccccccHHHhcCCcccccccceehhhcCCc--------cccccceeEEE
Confidence            688776544321      1333332 222222211110  1233333110     011110        00113466888


Q ss_pred             EEEEeccceEEEEecCCC-CCCcccEEEEEEeec--------------CCCCceEeecceeeeeee-ccCCceeEEEEee
Q psy12061        188 VVEVHKTSATIQWTDGAT-NGRPITHYKIIARTN--------------WNSTWFNVSEHVIGKEVD-RYTGRKEASIENV  251 (626)
Q Consensus       188 ~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~--------------~~~~w~~~~~~~~~~~~~-~~~~~~~~~i~~~  251 (626)
                      +...+++++.|+|++|.. ++.++.+|.|+++..              +...|............. .......+.+.+ 
T Consensus       477 v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~-  555 (897)
T 2dtg_E          477 YIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRG-  555 (897)
T ss_dssp             EEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECS-
T ss_pred             EEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeCC-
Confidence            899999999999999864 456899999998865              234676543322111000 000123455555 


Q ss_pred             ccCCceEEEEEEE-ecCCcc----CCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEE
Q psy12061        252 LVPWSTYEFKVIA-GNELGY----GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIF  326 (626)
Q Consensus       252 l~~~~~y~~~v~a-~n~~g~----~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~  326 (626)
                      |.|++.|.|+|+| .|..|.    +.++... .+++...+| .+|.++.+...+.+++.|+|++  +...++.+.+|+|+
T Consensus       556 L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v-~~~T~~~~P-s~P~~l~~~~~s~tsI~LsW~p--P~~~nG~I~~Y~V~  631 (897)
T 2dtg_E          556 LKPWTQYAIFVKTLVTFSDERRTYGAKSDII-YVQTDATNP-SVPLDPISVSNSSSQIILKWKP--PSDPNGNITHYLVF  631 (897)
T ss_dssp             CCSSCBCCBEEEECCCCCSSCCCCCCBCCCB-CCBCCCCCC-CCCEEEEEEECSSSCEEEEEEC--CCCSSSSCSEEECC
T ss_pred             CCCCcEEEEEEEEEEeccCCccccCCccceE-EEECCCCCC-cCCcceEEEeCCCCEEEEEEeC--CCCCCCCeeEEEEE
Confidence            9999999999999 999987    4445443 566766666 5899999999999999999998  45677889999999


Q ss_pred             EEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecce
Q psy12061        327 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTA  406 (626)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~s  406 (626)
                      |+..+......     ..+    ......|.|++.|.++|.|.+..+.+..+......+....|. .|..+. ...+.++
T Consensus       632 ~~~~~~~~~~~-----~~~----~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~-~p~~~~-~~~~~~s  700 (897)
T 2dtg_E          632 WERQAEDSELF-----ELD----YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPK-TDSQIL-KELEESS  700 (897)
T ss_dssp             EEEECCCCSCT-----TCS----SSCSCCCCCC-----------------------------------------------
T ss_pred             EEECCCCccce-----ecc----cccCCCcCCccccceeeecccccCcccccccccCCCccCCcC-cccchh-hhhhhhh
Confidence            98765322110     000    112345789999999999999877655443222222233444 333443 4567789


Q ss_pred             EEEEeeeccccccccceeeEEEE---EEEEe--cCC----CccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCC
Q psy12061        407 INVTWNPIELIRENIRGRLIGHR---IKYWK--EDN----PEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE  477 (626)
Q Consensus       407 i~l~W~~~~~~~~~~~~~i~~Y~---v~~~~--~~~----~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~  477 (626)
                      +.++|+.+....      +..+.   .++..  ..+    ......  .......++++.+|+|++.|.|+|+|.|..|.
T Consensus       701 ~~~~W~~~~~n~------v~~~~p~~~r~~l~~~~n~t~~~~~~~~--~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~  772 (897)
T 2dtg_E          701 FRKTFEDYLHNV------VFVPRPSRKRRSLGDVGNAGNNEEHRPF--EKVVNKESLVISGLRHFTGYRIELQACNQDTP  772 (897)
T ss_dssp             -----------------------------------------CCSCS--CEECSCSEEEECSSCSSCEEEECCEEESCSSS
T ss_pred             eeeeEEEccCce------EEccCCCcccccccccccccCccccceE--EecCCceEEEECCCCCCcEEEEEEEEEeCCCC
Confidence            999999765311      11110   00000  000    000000  11234467999999999999999999999998


Q ss_pred             CCC---CccEEEeecCC-CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCcc
Q psy12061        478 GPE---SERYLERTYRK-APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT  553 (626)
Q Consensus       478 s~~---s~~~~~~t~~~-~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~  553 (626)
                      ++.   +..+.++|.+. .++.+|.++++...+.+++.|+|+  +|...+|.|.+|.|+|+..+................
T Consensus       773 g~~~s~s~~v~~~T~~~~~~p~~P~~l~~~~~~~~sv~LsW~--~P~~~nG~I~~Y~V~y~~~~~~~~~~~~~~~~~~~~  850 (897)
T 2dtg_E          773 EERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQ--EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALE  850 (897)
T ss_dssp             SCCBCCCCCEEEECCCCCCCCCCCCCCCCCSSSSSCCCCCCC--CCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCT
T ss_pred             CCCCCCCceeEEeccCccCCCCCCcceEEEeCCCCEEEEEEC--CCCCCCCCEEEEEEEEEECCCcceEEEEeeeeeccc
Confidence            764   55677888753 334578888888888999999999  667789999999999876654211111111123467


Q ss_pred             ceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecccc
Q psy12061        554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK  595 (626)
Q Consensus       554 ~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~  595 (626)
                      +.+.+.+|.|+ .|.|+|+|.|.+|.|++|+++ .|++.+.+
T Consensus       851 ~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v-~~~T~~~p  890 (897)
T 2dtg_E          851 RGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPT-YFYVTDYL  890 (897)
T ss_dssp             TCCCCCSCCSS-EECCCCCEEETTBCCCCCCCC-EECCCCCC
T ss_pred             CcEEECCCCCC-cEEEEEEEEeCCcccCCCCCE-EEEeCCCC
Confidence            78999999999 699999999999999999765 57666543

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.98  E-value=9.1e-30  Score=239.75  Aligned_cols=267  Identities=19%  Similarity=0.281  Sum_probs=205.2

Q ss_pred             CCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEE
Q psy12061        284 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEY  362 (626)
Q Consensus       284 ~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y  362 (626)
                      ..+++.+|.++.+...+.+++.|+|+++     ++.+.+|.|+|+..+ ...|......    .....+.+.+|.|++.|
T Consensus        17 ~~~~p~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y   87 (290)
T 3r8q_A           17 QGPAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKEINLA----PDSSSVVVSGLMVATKY   87 (290)
T ss_dssp             ---CCCCCEEEEEEEECSSCEEEEEECC-----SSCCCEEEEEEEESSSSSCCEEEEEC----TTCCEEEECSCCSSCEE
T ss_pred             eCCCCCCCCceEEEECCCCEEEEEEeCC-----CCCeeEEEEEEEeCCCCCceEEEEcC----CCccEEEeCCCCCCCEE
Confidence            3455678999999999999999999983     357899999999876 4455544332    13456789999999999


Q ss_pred             EEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce
Q psy12061        363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA  442 (626)
Q Consensus       363 ~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~  442 (626)
                      .|+|+|.|..|.+.++. ..+.+.+.. . +|.++.+...+.+++.|+|+++.       +.+.+|.|+|+..+..... 
T Consensus        88 ~~~V~a~~~~g~s~~s~-~~~~t~~~~-~-~P~~l~~~~~~~~sv~l~W~~p~-------~~~~~Y~v~~~~~~~~~~~-  156 (290)
T 3r8q_A           88 EVSVYALKDTLTSRPAQ-GVVTTLENV-S-PPRRARVTDATETTITISWRTKT-------ETITGFQVDAVPANGQTPI-  156 (290)
T ss_dssp             EEEEEEEETTEECCCEE-EEEECCCCC-C-CCEEEEEEEECSSCEEEEEECCS-------CCCCEEEEEEEESSSCCCE-
T ss_pred             EEEEEEEeCCCCCCCcc-eeEecCCCC-C-CCceeEEEEcCCCeEEEEEeCCC-------CcccEEEEEEEECCCCcce-
Confidence            99999999999988764 445554443 3 78899999999999999999873       4588999999876654322 


Q ss_pred             EEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCC
Q psy12061        443 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE  522 (626)
Q Consensus       443 ~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~  522 (626)
                       ..........+.+.+|.|++.|.|+|+|.|..|.|.... +.+.|.    +.+|.++.+...+.+++.|+|++  |.  
T Consensus       157 -~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t~----p~~P~~l~~~~~~~~sv~l~W~~--p~--  226 (290)
T 3r8q_A          157 -QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVV-IDASTA----IDAPSNLRFLATTPNSLLVSWQP--PR--  226 (290)
T ss_dssp             -EEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECC----CCCCEEEEEEEEETTEEEEEEEC--CS--
T ss_pred             -EEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEE-EEecCC----CCCCCccEEEeeCCCEEEEEEeC--CC--
Confidence             223345566799999999999999999999998876542 334443    34788999998999999999994  43  


Q ss_pred             CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        523 EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       523 ~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                       +.+.+|.|+|+..+....  ..........+++.+.+|.|++.|.|+|+|++..|.|++.
T Consensus       227 -~~~~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  284 (290)
T 3r8q_A          227 -ARITGYIIKYEKPGSPPR--EVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL  284 (290)
T ss_dssp             -SCCCEEEEEEECTTSCCE--ECSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             -CcccEEEEEEEeCCCCcc--eeEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCcc
Confidence             578999999876544321  1112334577899999999999999999999999988743

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.97  E-value=2.9e-30  Score=244.42  Aligned_cols=277  Identities=15%  Similarity=0.181  Sum_probs=201.8

Q ss_pred             CCCceEEecCCcEEEEEEeccc-------CCcceeEEEeeCCEEeccccCCccCCCeeEe-cCCeEEEeecCCCCCEeEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTE-------ELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYE  158 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~-------p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .|++..+..|++++|.|.+.+.       |.|  .|.|+|||..+....      .++.. ..+.|.|.+++..| |.|+
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p--~i~W~~~g~~i~~~~------~~~~~~~~~~L~i~~~~~~~-g~Y~   80 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN--YIVWKTNHFTIPKEQ------YTIINRTASSVTFTDIASLN-IQLT   80 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGG--GEEEEETTEECCGGG------CEEEETTEEEEEECSCCCSE-EEEE
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChh--heEEEECCEECChhh------eeeeCCcEEEEEEcCcCCCc-eEEE
Confidence            4677889999999999999974       444  569999999886432      11111 13579999999885 9999


Q ss_pred             EEEEeCCCc--eEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeee
Q psy12061        159 CVVKSTVGK--ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE  236 (626)
Q Consensus       159 C~a~n~~g~--~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~  236 (626)
                      |.|.|..+.  ....+.|.+..+|.+|.++.+...+.+++.|+|+++.+++. ...|.|+++..+...|.-...      
T Consensus        81 C~a~~~g~~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~~-~~~Y~v~~~~~~~~~~~~~~~------  153 (303)
T 1i1r_A           81 CNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAK------  153 (303)
T ss_dssp             EEEEETTTEEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECCCEECC------
T ss_pred             EecccCCCcceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCCC-CcCEEEEEEecCCCCccCCCc------
Confidence            999885322  23456788899999999999988888999999999877654 579999998654332221110      


Q ss_pred             eeccCCceeEEEEeec-cCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecC--CcCeEEEEEeeCCC
Q psy12061        237 VDRYTGRKEASIENVL-VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG--KIGDLSISWEPLPR  313 (626)
Q Consensus       237 ~~~~~~~~~~~i~~~l-~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~--~~~~v~l~W~~~~~  313 (626)
                         ......+.+.+ | .+++.|.|+|.|.|..|.+.++..  .+.+....++.+|.++.+...  +.+++.|+|++  +
T Consensus       154 ---~~~~~~~~i~~-L~~p~t~Y~f~V~A~N~~G~~~s~~~--~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~--p  225 (303)
T 1i1r_A          154 ---RDTPTSCTVDY-STVYFVNIEVWVEAENALGKVTSDHI--NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--P  225 (303)
T ss_dssp             ---SSCTTEEECSS-CCCTTSCEEEEEEEEETTEEEECCCE--EECGGGGEECCCCEEEEEECCSSSSSCEEEEEEC--C
T ss_pred             ---CCCceEEEECC-cCcccccEEEEEEEEcCCCCcccCCE--EECHHHeEecCCCcceEEEEecCCCCEEEEEECC--C
Confidence               01223555554 9 899999999999999998753322  222222345578888887643  67899999998  3


Q ss_pred             CCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCC---CccEEEEccCC
Q psy12061        314 EKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE---SEVVTIFSAED  388 (626)
Q Consensus       314 ~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~---s~~~~~~t~~~  388 (626)
                      ...++.+.+|.|+|+..+...|....... .......+.+.+|.|++.|.|+|+|.|..|.|.+   |..+.++|.++
T Consensus       226 ~~~~~~i~~Y~v~y~~~~~~~w~~~~~~~-~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~  302 (303)
T 1i1r_A          226 SIKSVIILKYNIQYRTKDASTWSQIPPED-TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED  302 (303)
T ss_dssp             GGGGTSCEEEEEEEEETTCSSCEECCGGG-GCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred             CCCCcccEEEEEEEEeCCCCCceEEcccc-CCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence            44567899999999998877787543211 0123346889999999999999999999987655   56677777654

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.97  E-value=3.5e-29  Score=235.07  Aligned_cols=260  Identities=15%  Similarity=0.193  Sum_probs=200.0

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEEEEE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK  365 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~  365 (626)
                      ++.+|.++.+...+.+++.|+|+++.     +.+.+|.|+|+... ...|.....    ......+.+.+|.|++.|.|+
T Consensus        14 ~p~~P~~l~~~~~~~~sv~l~W~~~~-----~~~~~Y~v~~~~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y~~~   84 (283)
T 1tdq_A           14 VIDGPTQILVRDVSDTVAFVEWTPPR-----AKVDFILLKYGLVGGEGGKTTFRL----QPPLSQYSVQALRPGSRYEVS   84 (283)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCS-----SCCSEEEEEEEESSSSCCCEEEEE----CTTCSEEEECSCCTTCEEEEE
T ss_pred             CCCCCcEEEEEecCCCeEEEEEECCC-----CceeEEEEEEEEecCCCCcEEEEe----CCCCCEEEecCCCCCCEEEEE
Confidence            45788999999889999999999832     56889999998654 344433322    123456789999999999999


Q ss_pred             EEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEE
Q psy12061        366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY  445 (626)
Q Consensus       366 v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~  445 (626)
                      |+|.|..|.+.+ ....+.+   .| .+|.++++...+.+++.|+|+++.       +.+.+|.|+|+..+.......  
T Consensus        85 V~a~~~~g~s~~-~~~~~~t---~p-~~P~~l~~~~~~~~sv~l~W~~p~-------~~i~~Y~v~~~~~~~~~~~~~--  150 (283)
T 1tdq_A           85 ISAVRGTNESDA-SSTQFTT---EI-DAPKNLRVGSRTATSLDLEWDNSE-------AEAQEYKVVYSTLAGEQYHEV--  150 (283)
T ss_dssp             EEEEETTEECCC-EEEEEEC---CC-CCCEEEEEEEECSSCEEEEEECCS-------SCCSEEEEEEEETTCCCCEEE--
T ss_pred             EEEECCCCCCCC-eeEEEEC---CC-CCCCceEEEecCCCeEEEEecCCC-------CCccEEEEEEEeCCCCcceEE--
Confidence            999998887653 3333444   23 378899999999999999999886       348899999987765433222  


Q ss_pred             EecCc---cceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCC
Q psy12061        446 LSRTT---RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE  522 (626)
Q Consensus       446 ~~~~~---~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~  522 (626)
                      .....   ...+.+.+|+|++.|.|+|+|.|..|.|.... ..+.+.   | .+|.++.+...+.+++.|+|+  ++   
T Consensus       151 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t~---~-~~P~~l~~~~~~~~sv~l~W~--~p---  220 (283)
T 1tdq_A          151 LVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT-MNARTE---L-DSPRDLMVTASSETSISLIWT--KA---  220 (283)
T ss_dssp             EEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECC---C-CCCEEEEEEEECSSCEEEEEE--CC---
T ss_pred             ECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE-EEecCC---C-CCCCccEEeEecCCEEEEEEe--CC---
Confidence            22233   56799999999999999999999988765432 223332   2 367899999989999999999  43   


Q ss_pred             CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        523 EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       523 ~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      ++.+.+|.|+|+..++.    ..........+.+.+.+|.|++.|.|+|+|+|..|.|+++
T Consensus       221 ~~~i~~Y~v~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~  277 (283)
T 1tdq_A          221 SGPIDHYRITFTPSSGI----SSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES  277 (283)
T ss_dssp             CSCCSEEEEEEECSSSC----CEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             CCcccEEEEEEEcCCCC----eeEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCCCcce
Confidence            47889999998765543    2344556788899999999999999999999999998866

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.97  E-value=1.4e-29  Score=240.81  Aligned_cols=281  Identities=14%  Similarity=0.164  Sum_probs=201.6

Q ss_pred             CCceEEecCCcEEEEEEeccc--CC-cceeEEEeeCCEEeccccCCccCCCeeEecC---CeEEEeecCCCCCEeEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTE--EL-LDVAYIWTHNGVRIGNMDLNELETPNINIDG---GLLEITNASFADAGEYECVV  161 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~--p~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      |++..+..|++++|.|.+.+.  +. |...|.|++||..+.....      +....+   +.|.|.+++..|+|.|.|.+
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~------~~~~~~~~~~~L~i~~~~~~d~g~y~c~~   80 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQ------QRLSDGTQESIITLPHLNHTQAFLSCSLN   80 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEE------CCCSSSCCCEEEEESCCCSSEEEEEEEEE
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccce------EEEecCeEEEEEEEeccCCCccceEEeee
Confidence            457789999999999999997  21 2245699999998754321      111122   57999999999999999998


Q ss_pred             EeCCCceEEEEEEEEeCCCCCCCceEEEEEe-ccceEEEEecCCCCCCcccEEEEEEeecCC------CCceEeecceee
Q psy12061        162 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVH-KTSATIQWTDGATNGRPITHYKIIARTNWN------STWFNVSEHVIG  234 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~-~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~------~~w~~~~~~~~~  234 (626)
                      .+..+.....+.|.+..+|.+|.++.|.... ..++.++|+++.+++.+ ..|.|+++..+.      ..|..+..    
T Consensus        81 ~~~~~~~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~-~~Y~l~~~~~~~~~~~~~~~~~~~~~----  155 (313)
T 2d9q_B           81 WGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLP-TSFTLKSFKSRGNCQTQGDSILDCVP----  155 (313)
T ss_dssp             SSSSEEEEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCTTSCSCCCCEEEECC----
T ss_pred             cCCCceeEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCc-eeEEEEEEecCCCcccCCcccccCCC----
Confidence            7766666778899999999999999998774 68999999998775554 579999886542      12222211    


Q ss_pred             eeeeccCCceeEEEEe-eccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecC------CcCeEEEE
Q psy12061        235 KEVDRYTGRKEASIEN-VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG------KIGDLSIS  307 (626)
Q Consensus       235 ~~~~~~~~~~~~~i~~-~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~------~~~~v~l~  307 (626)
                           ..+...+.+.. +|.+++.|.|+|.|.|..|.+.+. .. .+.+....++.+|.++.+...      +.+++.|+
T Consensus       156 -----~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~-~~-~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~  228 (313)
T 2d9q_B          156 -----KDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSP-QL-CLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLS  228 (313)
T ss_dssp             -----CTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECC-CE-EECGGGGEECCCCEEEECCC-------CCSCEEEE
T ss_pred             -----CCCCcEEEECccccccceeEEEEEEEECCCCCccCc-cE-EEehhheeccCcCceeEEEEecccccCCCCeEEEE
Confidence                 12223444432 499999999999999999986322 21 233333345578888887765      46899999


Q ss_pred             EeeCCCCCcccCcceEEEEEE-ecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCC---CCCccEEE
Q psy12061        308 WEPLPREKQNAPNIYYKIFWR-KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG---PESEVVTI  383 (626)
Q Consensus       308 W~~~~~~~~~~~~~~y~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~---~~s~~~~~  383 (626)
                      |+++.  ..+..+.+|+|+|+ ..+...|......   ......+.+.+|.|++.|.|+|+|.|..|.|   .||..+.+
T Consensus       229 W~~p~--~~~~~~l~Y~v~y~~~~~~~~w~~~~~~---~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~  303 (313)
T 2d9q_B          229 WEPWQ--PGLHINQKCELRHKPQRGEASWALVGPL---PLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLEL  303 (313)
T ss_dssp             EECCG--GGTTSCEEEEEEEEESSSCCCCEEEEEE---CSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEE
T ss_pred             ECCCC--CCCceeEEEEEEEccCCCCCCcEEcccc---cCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccce
Confidence            99843  33344579999999 5666778765332   1234678899999999999999999987766   46777888


Q ss_pred             EccCCCCC
Q psy12061        384 FSAEDMPQ  391 (626)
Q Consensus       384 ~t~~~~p~  391 (626)
                      +|.+++|.
T Consensus       304 ~T~~~~P~  311 (313)
T 2d9q_B          304 RTTERAAA  311 (313)
T ss_dssp             CCCC----
T ss_pred             eCCccCCC
Confidence            88887664

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.97  E-value=5.9e-28  Score=236.17  Aligned_cols=350  Identities=15%  Similarity=0.165  Sum_probs=243.1

Q ss_pred             CCCceEEec-CC--cEEEEEEeccc-CCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEE
Q psy12061         87 LPPKITIAA-HR--NLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        87 ~~~~~~v~~-g~--~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      +|.++.+.. ++  .+.|.+....+ +.....|.|...+..-....     ..........+.|.++.....+.|++.|.
T Consensus         4 ~P~~l~~~~~~~~~sv~l~W~~~~~~~i~~Y~v~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   78 (368)
T 1fnf_A            4 PPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSL-----EEVVHADQSSCTFDNLSPGLEYNVSVYTV   78 (368)
T ss_dssp             CCEEEEEEECSSSSCEEEEEECCSCSSCCEEEEEEEETTTCSSCCE-----EEEECTTCCEEECCCCCTTSCEEEEEEEE
T ss_pred             CCcceEEEecCCCcEEEEEEeCCCCCCceEEEEEEEECCCCCCcee-----EEEecCCcCEEEECCCCCCCEEEEEEEEE
Confidence            455655553 22  37888876542 22223344544321100000     00112245678899999999999999999


Q ss_pred             eCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCC-CCceEeecceeeeeeeccC
Q psy12061        163 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYT  241 (626)
Q Consensus       163 n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~  241 (626)
                      |..|..... ...+...+.+|.++.+...+..++.|+|+++..  ..+.+|.|+++.... ..|......         .
T Consensus        79 ~~~g~s~~~-~~~~~~~~~~p~~l~~~~~~~~si~l~W~~p~~--~~~~~Y~v~~~~~~~~~~~~~~~~~---------~  146 (368)
T 1fnf_A           79 KDDKESVPI-SDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPS--IDLTNFLVRYSPVKNEEDVAELSIS---------P  146 (368)
T ss_dssp             ETTEECCCE-EEEECCCCCCCEEEEEESCCSSCEEEEEECCTT--CCCSEEEEEEEETTCTTCCEEEEEC---------T
T ss_pred             cCCCccCce-eeeecCCCcCCceeEEEEcCCCeEEEEeeCCCC--CCCcEEEEEEEECCCCCccEEEEcC---------C
Confidence            998854332 334444555888999988899999999998733  568899999987654 345443211         2


Q ss_pred             CceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcc
Q psy12061        242 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI  321 (626)
Q Consensus       242 ~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~  321 (626)
                      ....+.+.+ |.+++.|.|+|+|.|..|.+.+...  ..    ..++.+|.++.+...+.+++.|+|+++.     +.+.
T Consensus       147 ~~~~~~i~~-L~p~t~Y~~~V~a~~~~g~s~~~~~--~~----~~~~~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~  214 (368)
T 1fnf_A          147 SDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPLRG--RQ----KTGLDSPTGIDFSDITANSFTVHWIAPR-----ATIT  214 (368)
T ss_dssp             TCCEEEECS-CCTTCEEEEEEEEEETTEECCCEEE--EE----ECCCCCCEEEEEESCCSSEEEEEEECCS-----SCCS
T ss_pred             CcceEEecC-CCCCCEEEEEEEEEeCCCCCCCeEe--ee----cCCCCCCCccEEEEccCCEEEEEEeCCC-----CCcC
Confidence            233555555 9999999999999999997654221  11    2233578899998888999999999832     5688


Q ss_pred             eEEEEEEecCC-CcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEE
Q psy12061        322 YYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSR  400 (626)
Q Consensus       322 ~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~  400 (626)
                      +|.|+|+..+. ..+......    .....+.+.+|.|++.|.|+|+|.|..|.+.++.. ...+   .|. +|.++.+.
T Consensus       215 ~Y~v~~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~-~~~t---~p~-~P~~l~~~  285 (368)
T 1fnf_A          215 GYRIRHHPEHFSGRPREDRVP----HSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-QQST---VSD-VPRDLEVV  285 (368)
T ss_dssp             EEEEEEECSCCSSCCEEEEEE----TTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE-EEEC---CCC-SCEEEEEE
T ss_pred             EEEEEEecCCCCCCccEEEeC----CCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc-cccC---CCC-CCCeeEEE
Confidence            99999987763 233322221    23356788999999999999999999998776532 2222   333 78899999


Q ss_pred             eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCC
Q psy12061        401 GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE  480 (626)
Q Consensus       401 ~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~  480 (626)
                      ..+.+++.|+|+++..       .+.+|.|+|+..+...... ..........+.+.+|+|++.|.|+|+|.|..|.|++
T Consensus       286 ~~~~~sv~l~W~~p~~-------~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~  357 (368)
T 1fnf_A          286 AATPTSLLISWDAPAV-------TVRYYRITYGETGGNSPVQ-EFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA  357 (368)
T ss_dssp             EEETTEEEEEEECCSS-------CCSEEEEEEEETTCCSCCE-EEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCC
T ss_pred             ecCCCEEEEEeeCCCC-------ccceEEEEEEECCCCCccE-EEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcc
Confidence            8999999999998863       3789999998766543222 2233455677999999999999999999999999987


Q ss_pred             Cc
Q psy12061        481 SE  482 (626)
Q Consensus       481 s~  482 (626)
                      +.
T Consensus       358 s~  359 (368)
T 1fnf_A          358 SS  359 (368)
T ss_dssp             BC
T ss_pred             cC
Confidence            75

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.97  E-value=8.9e-28  Score=235.47  Aligned_cols=352  Identities=16%  Similarity=0.179  Sum_probs=246.6

Q ss_pred             eCCCceEEec--CC-cEEEEEEeccc-CCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEE
Q psy12061         86 QLPPKITIAA--HR-NLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        86 ~~~~~~~v~~--g~-~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      .+|.++.+..  .. .+.|.+..... +.....+.|...+..-....     ..........+.|.++.....+.|++.|
T Consensus         4 ~~P~~l~~~~~~~~~sv~l~W~~~~~~~~~~Y~v~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   78 (375)
T 3t1w_A            4 SPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSL-----EEVVHADQSSCTFDNLSPGLEYNVSVYT   78 (375)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEECCSCSSCCEEEEEEEETTCTTSCCE-----EEEEETTCCEEEECCCCTTCCEEEEEEE
T ss_pred             CCCCccEEEecCCCeEEEEEEeCCCCCCeeeEEEEEEECCCCCCcce-----eEEcCCCccEEEEcCCcCCCEEEEEEEE
Confidence            3566666653  33 57777765432 12223355554332100000     0112225578999999999999999999


Q ss_pred             EeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCc-eEeecceeeeeeecc
Q psy12061        162 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW-FNVSEHVIGKEVDRY  240 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w-~~~~~~~~~~~~~~~  240 (626)
                      .|..|............+| +|.++.+...+.+++.|+|+++.  +..+.+|.|+++..+...+ .....         .
T Consensus        79 ~~~~g~s~~~~~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~--~~~i~~Y~v~~~~~~~~~~~~~~~~---------~  146 (375)
T 3t1w_A           79 VKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFEDFV---------D  146 (375)
T ss_dssp             EETTEECCCEEEEECCCCC-CCSCCEEECCCSSEEEEECCCCC--CTTEEEEEEEEEESSSCCSCEEEEE---------C
T ss_pred             EcCCCCCCcEEeeEcCCCC-CCceEEEEecCCCeEEEEEECCC--CCCceEEEEEEEECCCCCceeEEEc---------C
Confidence            9987754443333333444 58899998999999999999874  3578999999987654322 21111         0


Q ss_pred             CCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCc
Q psy12061        241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN  320 (626)
Q Consensus       241 ~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~  320 (626)
                      .....+.+.+ |.+++.|.|+|+|.|..|.+.++..  ...+   .+ .+|.++.+...+.+++.|+|++++    ++.+
T Consensus       147 ~~~~~~~i~~-L~p~t~Y~~~V~a~~~~g~s~~s~~--~~~t---~~-~~p~~l~~~~~~~~si~l~W~~p~----~~~i  215 (375)
T 3t1w_A          147 SSVGYYTVTG-LEPGIDYDISVITLINGGESAPTTL--TQQT---AV-PPPTDLRFTNIGPDTMRVTWAPPP----SIDL  215 (375)
T ss_dssp             TTCCEEEEEC-CCTTCEEEEEEEEEETTEECCCEEE--EEEC---CC-CCCEEEEEESCCSSCEEEEEECCS----SCCC
T ss_pred             CCcceEEEeC-CCCCCEEEEEEEEEeCCcccCCeee--eeec---CC-CCCceeEEEecccCEEEEEEcCCC----CCCc
Confidence            2334566655 9999999999999999998876653  2333   22 378899998888999999999832    3668


Q ss_pred             ceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEE
Q psy12061        321 IYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFS  399 (626)
Q Consensus       321 ~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~  399 (626)
                      .+|.|+|+..+ ...|......    .....+.+.+|.|++.|.|+|+|.|..|.|.++. ....+   .|. +|.++.+
T Consensus       216 ~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t---~p~-~P~~l~~  286 (375)
T 3t1w_A          216 TNFLVRYSPVKNEEDVAELSIS----PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKT---GLD-SPTGIDF  286 (375)
T ss_dssp             CEEEEEEEEGGGTTCCEEEEEC----TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCC-CCEEEEE
T ss_pred             cEEEEEEEeCCCCCCcEEEEcC----CCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEec---CCC-CCCccEe
Confidence            99999999876 3444433322    1335678999999999999999999999876543 33344   333 7889999


Q ss_pred             EeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCC
Q psy12061        400 RGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP  479 (626)
Q Consensus       400 ~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~  479 (626)
                      ...+.+++.|+|++|.       +.+.+|.|+|+..+..... ...........+.+.+|+|++.|.|+|+|.|..|.|+
T Consensus       287 ~~~~~~sv~l~W~~p~-------~~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~  358 (375)
T 3t1w_A          287 SDITANSFTVHWIAPR-------ATITGYRIRHHPEHFSGRP-REDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESP  358 (375)
T ss_dssp             ESCCSSCEEEEEECCS-------SCCSEEEEEEEETTCCSSC-EEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             eeccCCEEEEEECCCC-------cceeeEEEEEEECCCCCcc-eeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCC
Confidence            8889999999999874       5588999999887653222 2233345566799999999999999999999999987


Q ss_pred             CCc
Q psy12061        480 ESE  482 (626)
Q Consensus       480 ~s~  482 (626)
                      +..
T Consensus       359 p~s  361 (375)
T 3t1w_A          359 LLI  361 (375)
T ss_dssp             CEE
T ss_pred             cee
Confidence            653

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.97  E-value=3.8e-28  Score=228.88  Aligned_cols=276  Identities=14%  Similarity=0.158  Sum_probs=202.6

Q ss_pred             CCCCCCCceEEEEEe-----ccceEEEEecC--CCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEe
Q psy12061        178 GPPGLPGGVQVVEVH-----KTSATIQWTDG--ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN  250 (626)
Q Consensus       178 ~~P~~p~~~~~~~~~-----~~~~~l~W~~~--~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~  250 (626)
                      .+|..|.++......     .+++.|.|+++  .+.+..+.+|.|+++..+...+ ...           ..  ...+..
T Consensus         2 ~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~-~~~-----------~~--~~~~~~   67 (290)
T 3l5i_A            2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-NYT-----------VN--ATKLTV   67 (290)
T ss_dssp             CCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCE-EEE-----------ES--SSEEEE
T ss_pred             CCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCce-eEe-----------cC--CcEEEE
Confidence            467777787664332     58999999973  3456788999999988654332 110           01  123434


Q ss_pred             eccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEec
Q psy12061        251 VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK  330 (626)
Q Consensus       251 ~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~  330 (626)
                       |.+++.|.|+|.|.|..|.+.++..  ........++.++.++.+.... +++.|+|+++.  .   .+.+|.|+|+..
T Consensus        68 -l~p~t~Y~~~V~A~n~~G~s~~s~~--~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~--~---~i~~Y~v~~~~~  138 (290)
T 3l5i_A           68 -NLTNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPR--E---SVKKYILEWCVL  138 (290)
T ss_dssp             -EECSSCEEEEEEEEESSCBCCCEEE--EECCTTCCCCCCCEEEEEEEET-TEEEEEEECCS--S---CCCEEEEEEEEE
T ss_pred             -EcCCceEEEEEEEEcCCCCCCCceE--EeecccccCCCccceeEEEeCC-CeEEEEEeCCC--C---CCCcEEEEEEEC
Confidence             9999999999999999998865532  1222222455677788776654 69999999842  2   689999999987


Q ss_pred             CCCc-----ceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecc
Q psy12061        331 NDTE-----FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNST  405 (626)
Q Consensus       331 ~~~~-----~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~  405 (626)
                      +...     |...     .......+.+.+|.|++.|.|+|+|.|..|.|. +......+.+..|..+| .+.+...+.+
T Consensus       139 ~~~~~~~~~~~~~-----~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~-~~~~~~~t~~~~P~~~p-~~~~~~~~~~  211 (290)
T 3l5i_A          139 SDKAPCITDWQQE-----DGTVHRTYLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGP-TVRTKKVGKN  211 (290)
T ss_dssp             CSSSCCCCEEEEE-----ETTCSEEECCSCCCTTCEEEEEEEEEETTEECC-CEEEEEESSCCCCSSCC-CEEEEEECSS
T ss_pred             CCCCCCCcCeEEc-----cCCCcceEEecCcCCccEEEEEEEEEeCCcccc-cEEEEeEccccCCCCCC-eeeEeeccCC
Confidence            6332     3222     123445677899999999999999999999887 45666678888887555 7788888999


Q ss_pred             eEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEE
Q psy12061        406 AINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYL  485 (626)
Q Consensus       406 si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~  485 (626)
                      ++.|+|+++.....  +|.|.+|.|+|+..+...   ..........++++.+|+|++.|.|+|+|.|..| |+.|..+.
T Consensus       212 sv~l~W~~~~~~~~--~g~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~  285 (290)
T 3l5i_A          212 EAVLEWDQLPVDVQ--NGFIRNYTIFYRTIIGNE---TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFT  285 (290)
T ss_dssp             CEEEEECCCCHHHH--SSCCCEEEEEEEETTSCC---EEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEE
T ss_pred             EEEEEEcCCChhcc--CCEEEEEEEEEEeCCCCe---EEEEeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceE
Confidence            99999996543222  378999999998765432   1223355667799999999999999999999999 88888888


Q ss_pred             Eeec
Q psy12061        486 ERTY  489 (626)
Q Consensus       486 ~~t~  489 (626)
                      ++|.
T Consensus       286 ~~T~  289 (290)
T 3l5i_A          286 FTTP  289 (290)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            8875

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.96  E-value=2.8e-28  Score=235.96  Aligned_cols=310  Identities=12%  Similarity=0.131  Sum_probs=167.7

Q ss_pred             cCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCC-cCeEEEEEeeCCC-CCcccCcceEEEEEEec
Q psy12061        253 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK-IGDLSISWEPLPR-EKQNAPNIYYKIFWRKK  330 (626)
Q Consensus       253 ~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~-~~~v~l~W~~~~~-~~~~~~~~~y~i~~~~~  330 (626)
                      .-...|.+.+.+.|..|.+.....        ..++.||.++.+...+ .+++.|+|+++.. +..++.+..|+|+|+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~   76 (380)
T 3lb6_C            5 CLAVGCLYTFLISTTFGCTSSSDT--------EIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNI   76 (380)
T ss_dssp             ----------------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEET
T ss_pred             EEehhhhhhheeecccccccCCcc--------cccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCC
Confidence            345677888888998885522221        2234789999998765 6899999999554 23456789999999998


Q ss_pred             CCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecC----CCCCCCCccEEEEc---cCCCCCCCCCceEEEeee
Q psy12061        331 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND----VGPGPESEVVTIFS---AEDMPQVAPQGVFSRGFN  403 (626)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~----~g~~~~s~~~~~~t---~~~~p~~~p~~~~~~~~~  403 (626)
                      +.+.|+.....   +  ......  +..+..|.|||+|.|.    .|.|.+|......+   .++.|+.+|.++++...+
T Consensus        77 ~~~~w~~~~~~---~--~~~~~~--~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~  149 (380)
T 3lb6_C           77 GSETWKTIITK---N--LHYKDG--FDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYN  149 (380)
T ss_dssp             TCSSCEEEEES---S--SEEEEE--CCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEET
T ss_pred             CCCcceEEEec---c--EEEEEe--ecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECC
Confidence            87788876543   1  122223  3448999999999976    67777776554443   567888899999999999


Q ss_pred             cceEEEEeeeccccccccceeeEEEEEEEEecCCCccce--EEEEecCccceEEEe--CCccCceEEEEEEEeeCCCCCC
Q psy12061        404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA--VYYLSRTTRNWALIV--GLQPDTKYYVKVMAYNNAGEGP  479 (626)
Q Consensus       404 ~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~~~~~~i~--~L~p~t~Y~v~V~a~~~~g~s~  479 (626)
                      .+.+.++|+++...     +...+|.|+|+..+......  ......+......+.  ++.+++.|.|+|.|.|..|.++
T Consensus       150 ~~~l~csW~p~~~~-----~~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~  224 (380)
T 3lb6_C          150 WQYLLCSWKPGIGV-----LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIR  224 (380)
T ss_dssp             TTEEEEEEECC-----------CCEEEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CC
T ss_pred             CcEEEEEEcCCCCC-----CCCccEEEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeec
Confidence            99999999987643     34678999998765432211  111121222234444  5688899999999999888655


Q ss_pred             CCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCC-CCceeeEEEEEEEeccCCccccceeeecCccceEEe
Q psy12061        480 ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADI  558 (626)
Q Consensus       480 ~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~-~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l  558 (626)
                      . ....+.+.+.+++.||.++++...+.+++.|+|++  |... .+.+.+|+|+|+..+..+    ..... .  .++.+
T Consensus       225 s-~~~~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~--P~~~~~~~~l~Yev~y~~~~~~w----~~~~~-~--~~~~l  294 (380)
T 3lb6_C          225 S-SYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSI--PLGPIPARCFDYEIEIREDDTTL----VTATV-E--NETYT  294 (380)
T ss_dssp             C-EEEEECGGGSCCCCCCEEEEEC-------CEEEEC--CSSSCCSTTEEEEECC------------CCEE-S--SSCC-
T ss_pred             c-ccEEEcHHHcccCCCCceEEEEEcCCCeEEEEECC--CCCCCCcceEEEEEEEEeCCCCc----eEecc-c--ceEEE
Confidence            3 34567777777778999999987788899999995  4333 357789999998753321    11111 1  25778


Q ss_pred             cC-CCCCceEEEEEEEEec-----CC-CCCCCCCcEEEeecc
Q psy12061        559 VD-LSPGKRYHMRVLAFSN-----GG-DGRMSSPAITFQMGE  593 (626)
Q Consensus       559 ~~-L~p~~~Y~~~V~a~~~-----~G-~g~~s~~~~~~~~~~  593 (626)
                      .+ |+|++.|.|+|+|...     .| .|+||++ +.|.+.+
T Consensus       295 ~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~-~~~~t~~  335 (380)
T 3lb6_C          295 LKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDK-QCWEGED  335 (380)
T ss_dssp             -----------CCEEEEECTTTCSSCCCCCCCCC--------
T ss_pred             eCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCC-EEEeCCC
Confidence            88 9999999999999954     23 2566654 4566654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.96  E-value=4.9e-28  Score=227.71  Aligned_cols=249  Identities=21%  Similarity=0.342  Sum_probs=186.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.+.|.|+|+|..+..+.++.+..   +++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        17 ~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~   96 (284)
T 2rik_A           17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ   96 (284)
T ss_dssp             EETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEcc
Confidence            5689999999999999999999999999998777666542   3479999999999999999999999998888999999


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEe
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGE  156 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~  156 (626)
                      .+|.+...++....+..|++++|.|.+.+.|.+  .+.|++++..+.....     .+..  .....|.|.+++.+|+|.
T Consensus        97 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~  169 (284)
T 2rik_A           97 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKDETEIQESSK-----FRMSFVESVAVLEMYNLSVEDSGD  169 (284)
T ss_dssp             CCCEEEECCCSEEEEETTCCEEEEEEEESSSCC--EEEEEETTEECCCSSS-----EEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCCcccccCCCceEecCCceEEEEEEEeeeCCC--EEEEEECCEECcCCCc-----EEEEEcCCEEEEEECCCCcccCEE
Confidence            999888777777889999999999999998776  5699999999875421     1222  234679999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCCCCCCCceE-EEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK  235 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~  235 (626)
                      |+|.|.|..|..+..+.|.|..+|....... ........+.|.|...   +.+..  .+.|..++        ..+...
T Consensus       170 Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~~--~v~W~~~~--------~~~~~~  236 (284)
T 2rik_A          170 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ---GTPPF--QVSWHKDK--------RELRSG  236 (284)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECB---SSSCC--EEEEEETT--------EEECBT
T ss_pred             EEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEE---ecCCC--EEEEEECC--------EECcCC
Confidence            9999999999999999999998885432211 1223455678888743   22222  23332221        111000


Q ss_pred             e---eeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        236 E---VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       236 ~---~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      .   .........+.+.+ +...+.+.|+|.|.|..|..
T Consensus       237 ~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~  274 (284)
T 2rik_A          237 KKYKIMSENFLTSIHILN-VDSADIGEYQCKASNDVGSY  274 (284)
T ss_dssp             TTEEEEEETTEEEEEECS-CCGGGCEEEEEEEEETTEEE
T ss_pred             CCEEEEEcCCEEEEEEcC-CCcccCEEEEEEEEeCCCce
Confidence            0   00001122455555 88999999999999999854

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.96  E-value=5.4e-27  Score=220.11  Aligned_cols=270  Identities=17%  Similarity=0.186  Sum_probs=198.4

Q ss_pred             EEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecC-CCCceEeecceeeeeeeccCCceeEEEEee
Q psy12061        173 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW-NSTWFNVSEHVIGKEVDRYTGRKEASIENV  251 (626)
Q Consensus       173 ~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (626)
                      .+....+|.+|.++.+...+.+++.|+|+++.   ..+.+|.|+++... ...|......         .....+.+.+ 
T Consensus         8 ~~~~~~~p~~P~~l~~~~~~~~sv~l~W~~~~---~~~~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~~i~~-   74 (283)
T 1tdq_A            8 GGGGIPVIDGPTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFRLQ---------PPLSQYSVQA-   74 (283)
T ss_dssp             ----CCSSCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSSCCCEEEEEC---------TTCSEEEECS-
T ss_pred             ccccccCCCCCcEEEEEecCCCeEEEEEECCC---CceeEEEEEEEEecCCCCcEEEEeC---------CCCCEEEecC-
Confidence            34456789999999999999999999999876   46889999997643 3344222110         2334556655 


Q ss_pred             ccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC
Q psy12061        252 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN  331 (626)
Q Consensus       252 l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~  331 (626)
                      |.+++.|.|+|+|.|..|.+.+...  .+.+    ++.+|.++.+...+.+++.|+|+++.     +.+.+|.|+|+..+
T Consensus        75 L~p~t~Y~~~V~a~~~~g~s~~~~~--~~~t----~p~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~  143 (283)
T 1tdq_A           75 LRPGSRYEVSISAVRGTNESDASST--QFTT----EIDAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLA  143 (283)
T ss_dssp             CCTTCEEEEEEEEEETTEECCCEEE--EEEC----CCCCCEEEEEEEECSSCEEEEEECCS-----SCCSEEEEEEEETT
T ss_pred             CCCCCEEEEEEEEECCCCCCCCeeE--EEEC----CCCCCCceEEEecCCCeEEEEecCCC-----CCccEEEEEEEeCC
Confidence            9999999999999999887643221  2222    34678899998888999999999832     56899999999877


Q ss_pred             CCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEe
Q psy12061        332 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTW  411 (626)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W  411 (626)
                      ...+........ ......+.+.+|.|++.|.|+|+|.|..|.+.... ....+   .|+ +|.++.+...+.+++.|+|
T Consensus       144 ~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t---~~~-~P~~l~~~~~~~~sv~l~W  217 (283)
T 1tdq_A          144 GEQYHEVLVPKG-IGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT-MNART---ELD-SPRDLMVTASSETSISLIW  217 (283)
T ss_dssp             CCCCEEEEEECC-SSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCC-CCEEEEEEEECSSCEEEEE
T ss_pred             CCcceEEECCCC-CcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE-EEecC---CCC-CCCccEEeEecCCEEEEEE
Confidence            655543333210 01156788999999999999999999988765432 22222   233 7789999999999999999


Q ss_pred             eeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCc
Q psy12061        412 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE  482 (626)
Q Consensus       412 ~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~  482 (626)
                      +++.       +.+.+|.|+|+..+...   ...........+.+.+|+|++.|.|+|+|.|..|.|+.+.
T Consensus       218 ~~p~-------~~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~  278 (283)
T 1tdq_A          218 TKAS-------GPIDHYRITFTPSSGIS---SEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLEST  278 (283)
T ss_dssp             ECCC-------SCCSEEEEEEECSSSCC---EEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             eCCC-------CcccEEEEEEEcCCCCe---eEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCCCccee
Confidence            9864       55889999998765432   2223345567799999999999999999999999887654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=3.7e-25  Score=233.23  Aligned_cols=505  Identities=13%  Similarity=0.160  Sum_probs=293.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-------------------CCcEEEccCCcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------------GGRRKIFENGNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-------------------~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++++|.|...+.+.+.|.|+|+......                   .+|..+..+++|.|.+++.+|+|.|+|.+
T Consensus        11 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~~~D~G~Y~C~~   90 (642)
T 1e07_A           11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHV   90 (642)
T ss_pred             ccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccCCcEEECCCCcccCcEEEEEE
Confidence            67999999999987777789999995432110                   24666677889999999999999999999


Q ss_pred             EcCC-CCceeeEEEEEEeCC--ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe
Q psy12061         63 TNVH-GMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI  139 (626)
Q Consensus        63 ~n~~-g~~~~~~~l~v~~~p--~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  139 (626)
                      .+.. +.....+.|.|...+  +.+.. +....+..|+.++|.|.+.+ |.  ..+.|+++|..+....     ...+..
T Consensus        91 ~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~--~~v~W~~~g~~l~~~~-----~~~~~~  161 (642)
T 1e07_A           91 IKSDLVNEEATGQFRVYPELPKPSISS-NNSKPVEDKDAVAFTCEPET-QD--ATYLWWVNNQSLPVSP-----RLQLSN  161 (642)
T ss_pred             EcCCCeEEEEEEEEEecccCCCCcEEc-cCceeEecCCcEEEEEECCC-CC--eeEEEEECCeECCCCC-----ceEEcC
Confidence            9864 444566778886632  22222 33467889999999999998 54  4679999999986542     112223


Q ss_pred             cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCCCCCCCce--EEEEEeccceEEEEecCCCCCCcccEEEEE
Q psy12061        140 DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGV--QVVEVHKTSATIQWTDGATNGRPITHYKII  216 (626)
Q Consensus       140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~~--~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~  216 (626)
                      .++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|..|...  .........+.|.|...   +.+...  + 
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~---g~p~~~--i-  235 (642)
T 1e07_A          162 GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA---SNPPAQ--Y-  235 (642)
T ss_pred             CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcC---CCCCcE--E-
Confidence            46799999999999999999999988864 566888888766544211  01123456777888752   222222  2 


Q ss_pred             EeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCc-ccCCCCCCCCCCceeE
Q psy12061        217 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ-YNTPADKPYQAPSRIG  295 (626)
Q Consensus       217 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~-~~~~~~~p~~~p~~~~  295 (626)
                             .|.+.+..+        .....+.+.+ +...+.+.|+|.|.|..|....+..... +...+..|...+....
T Consensus       236 -------~W~~~g~~i--------~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~  299 (642)
T 1e07_A          236 -------SWFVNGTFQ--------QSTQELFIPN-ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN  299 (642)
T ss_pred             -------EEEECCeEc--------ccCCceEEec-ccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCce
Confidence                   233322221        1122456655 8999999999999999875433222111 1111111100011111


Q ss_pred             eecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCC
Q psy12061        296 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG  375 (626)
Q Consensus       296 ~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~  375 (626)
                      ... ....+.|.+....    . +   ..+.|...+..--........  .....+.+.++.......|+|.|.|..|..
T Consensus       300 ~~~-~g~~v~l~C~~~~----~-p---~~v~W~~~g~~l~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  368 (642)
T 1e07_A          300 PVE-DEDAVALTCEPEI----Q-N---TTYLWWVNNQSLPVSPRLQLS--NDNRTLTLLSVTRNDVGPYECGIQNELSVD  368 (642)
T ss_pred             eEe-cCCcEEEEEECCC----C-C---ccEEEEECCccCCCcCCEEEe--CCCCEEEEeccCcccCeeEEEEEeCCCCCc
Confidence            111 1245788887621    1 1   256676665211000011110  112356777888888889999999998864


Q ss_pred             CCCcc--EEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccce
Q psy12061        376 PESEV--VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW  453 (626)
Q Consensus       376 ~~s~~--~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~  453 (626)
                      . +..  +.+...+..+...|....+  .....+.|.......+.         -.+.|...+...         .....
T Consensus       369 ~-s~~~~l~V~~~p~~~~~~~~~~~~--~~g~~~~l~C~~~g~p~---------~~i~W~~~g~~~---------~~~~~  427 (642)
T 1e07_A          369 H-SDPVILNVLYGPDDPTISPSYTYY--RPGVNLSLSCHAASNPP---------AQYSWLIDGNIQ---------QHTQE  427 (642)
T ss_pred             c-eeeEEEEEEcCCCCCeecCCceEe--cCCCcEEEEEEcCccCC---------CeEEEEECCEEc---------CCCce
Confidence            3 322  2333222222212222222  23445555554422110         134443332111         11234


Q ss_pred             EEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEE----EeeeCCCEEEEEEeecCCCCCCCceeeE
Q psy12061        454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH----IKGINPTTVHVTWRYVSPSFEEEPIIGY  529 (626)
Q Consensus       454 ~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~----~~~~~~~~~~l~W~~~~~~~~~~~i~~Y  529 (626)
                      +.|.++.+.....++..|.|..|....+..+.+......  .+| .+.    ........+.|.+..  .    ++  .-
T Consensus       428 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~--~~p-~i~~~~~~~v~~g~~v~l~C~~--~----~~--~~  496 (642)
T 1e07_A          428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKP-SISSNNSKPVEDKDAVAFTCEP--E----AQ--NT  496 (642)
T ss_pred             EEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC--CCc-eEecCCceeecCCCeEEEEEEC--C----CC--Cc
Confidence            788888888888888999999887655544444333211  122 111    122245678888882  2    11  12


Q ss_pred             EEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCC
Q psy12061        530 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGR  581 (626)
Q Consensus       530 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~  581 (626)
                      .+.|+..+..... ............+.|.++.......|+..|.|..|...
T Consensus       497 ~i~W~~~g~~l~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  547 (642)
T 1e07_A          497 TYLWWVNGQSLPV-SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANR  547 (642)
T ss_pred             EEEEEECCEeCCC-CCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCcc
Confidence            3444443332211 11222222345788888888888888999999988543

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.96  E-value=3.8e-28  Score=228.14  Aligned_cols=286  Identities=15%  Similarity=0.110  Sum_probs=186.1

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.++.+... ...+.|+|+++  .+.++.+. |.|+|+..+...|...............++...|.+++.|.|||+|
T Consensus         5 ~~P~nv~~~~~-n~~~iL~W~pp--~~~~~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A   80 (306)
T 3s98_A            5 KSPQKVEVDII-DDNFILRWNRS--DESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRA   80 (306)
T ss_dssp             ---CCCEEEEE-TTEEEEECC----------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEE
T ss_pred             CCCcEeEEEEE-CCeEEEEEcCC--CCCCCCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEE
Confidence            47888888765 45688999983  34445565 9999999877788754222111222333444457899999999999


Q ss_pred             ecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeecccccc--ccceeeEEEEEEEEecCCCccceEEEE
Q psy12061        369 INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE--NIRGRLIGHRIKYWKEDNPEETAVYYL  446 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~--~~~~~i~~Y~v~~~~~~~~~~~~~~~~  446 (626)
                      .| .|.|.++....+.+....+.++|. +.+.... ++|.|+|+|+...+.  ..+|.+.+|.|.||+.+......  . 
T Consensus        81 ~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~-~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~--~-  154 (306)
T 3s98_A           81 EK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAED-KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEER--I-  154 (306)
T ss_dssp             EC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEECS-SCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEE--E-
T ss_pred             Ee-CCcCCCEeeeeEechhhCccCCCe-EEEEEcC-CEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEE--E-
Confidence            99 888877766666665555555674 7776544 689999996543211  01478999999999887654322  1 


Q ss_pred             ecCccceEEEeCCccCceEEEEEEEee--CCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCC
Q psy12061        447 SRTTRNWALIVGLQPDTKYYVKVMAYN--NAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE  524 (626)
Q Consensus       447 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~--~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~  524 (626)
                       ......+.|.+|+|++.|.|+|+|.+  ..|.|++|..+.+.|..+.|+.+|.++.+...+ +++.|+|++  +.... 
T Consensus       155 -~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~~-~s~~l~W~~--p~~~~-  229 (306)
T 3s98_A          155 -ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDY--TYANM-  229 (306)
T ss_dssp             -EEECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEEC--SSSSC-
T ss_pred             -ecccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEec-CEEEEEeCC--CCCcE-
Confidence             12345699999999999999999999  678999999999999988888899999987655 789999994  43222 


Q ss_pred             ceeeEEEEEEEec-----cCCccccce--eeecCccceEEecC-CCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        525 PIIGYKVRVWEVD-----QDMSRANDT--IIPVGNTLDADIVD-LSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       525 ~i~~Y~i~~~~~~-----~~~~~~~~~--~~~~~~~~~~~l~~-L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                         +|.+.|...-     ......+..  .......+.+.+.+ |.+...|.|||+|.|..|.|.+|+. ..|.++.
T Consensus       230 ---~~~v~~~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~~~s~~s~~-~~~~~~~  302 (306)
T 3s98_A          230 ---TFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE-IKFDTEI  302 (306)
T ss_dssp             ---EEEEEEEEGGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEEEEEECSSCBCCCCCC-EEEEC--
T ss_pred             ---EEEEEEehhhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEEEEEccCCCccccccc-cccCccc
Confidence               4555544210     100111111  11233556777777 3455599999999999999999964 5677653

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.96  E-value=6.5e-27  Score=220.23  Aligned_cols=264  Identities=20%  Similarity=0.249  Sum_probs=198.5

Q ss_pred             CCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecC-CCCceEeecceeeeeeeccCCceeEEEEeeccCCc
Q psy12061        178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW-NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS  256 (626)
Q Consensus       178 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  256 (626)
                      .+|.+|.++.+...+.+++.|+|+++.   ..+.+|.|+++..+ ...|......         .....+.+.+ |.+++
T Consensus        19 ~~p~~P~~l~~~~~~~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~~i~~-L~p~t   85 (290)
T 3r8q_A           19 PAIPAPTDLKFTQVTPTSLSAQWTPPN---VQLTGYRVRVTPKEKTGPMKEINLA---------PDSSSVVVSG-LMVAT   85 (290)
T ss_dssp             -CCCCCEEEEEEEECSSCEEEEEECCS---SCCCEEEEEEEESSSSSCCEEEEEC---------TTCCEEEECS-CCSSC
T ss_pred             CCCCCCCceEEEECCCCEEEEEEeCCC---CCeeEEEEEEEeCCCCCceEEEEcC---------CCccEEEeCC-CCCCC
Confidence            467889999999999999999999873   36889999998765 3455443221         2233555655 99999


Q ss_pred             eEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcce
Q psy12061        257 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ  336 (626)
Q Consensus       257 ~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~  336 (626)
                      .|.|+|+|.|..|.+.++..  .+.+...+  .+|.++.+...+.+++.|+|+++     ++.+.+|.|+|+..+...+.
T Consensus        86 ~Y~~~V~a~~~~g~s~~s~~--~~~t~~~~--~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~  156 (290)
T 3r8q_A           86 KYEVSVYALKDTLTSRPAQG--VVTTLENV--SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPI  156 (290)
T ss_dssp             EEEEEEEEEETTEECCCEEE--EEECCCCC--CCCEEEEEEEECSSCEEEEEECC-----SCCCCEEEEEEEESSSCCCE
T ss_pred             EEEEEEEEEeCCCCCCCcce--eEecCCCC--CCCceeEEEEcCCCeEEEEEeCC-----CCcccEEEEEEEECCCCcce
Confidence            99999999999998876642  34444333  57889999888899999999983     35689999999987644333


Q ss_pred             eeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccc
Q psy12061        337 SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL  416 (626)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~  416 (626)
                      ....    ......+.+.+|.|++.|.|+|+|.|..|.+.+. .....+   .|. +|.++.+...+.+++.|+|++|. 
T Consensus       157 ~~~~----~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~-~~~~~t---~p~-~P~~l~~~~~~~~sv~l~W~~p~-  226 (290)
T 3r8q_A          157 QRTI----KPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV-VIDAST---AID-APSNLRFLATTPNSLLVSWQPPR-  226 (290)
T ss_dssp             EEEE----CTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEEC---CCC-CCEEEEEEEEETTEEEEEEECCS-
T ss_pred             EEec----CCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE-EEEecC---CCC-CCCccEEEeeCCCEEEEEEeCCC-
Confidence            2222    1234467899999999999999999999887643 233333   244 78899999899999999999876 


Q ss_pred             cccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCC
Q psy12061        417 IRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE  480 (626)
Q Consensus       417 ~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~  480 (626)
                            +.+.+|.|+|+..+...... ..........+.+.+|+|++.|.|+|+|.+..|.|++
T Consensus       227 ------~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          227 ------ARITGYIIKYEKPGSPPREV-VPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             ------SCCCEEEEEEECTTSCCEEC-SSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             ------CcccEEEEEEEeCCCCccee-EeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence                  35889999998765543211 1122345567999999999999999999999998764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=6.1e-26  Score=246.10  Aligned_cols=520  Identities=16%  Similarity=0.118  Sum_probs=292.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEE------ccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNI------IGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~------i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..      +....+... .+++|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus       260 v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  338 (816)
T 3dmk_A          260 YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ-VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL  338 (816)
T ss_dssp             ECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceEe-ccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEE
Confidence            46899999999999999999999995432      223344433 46789999999999999999999999988888888


Q ss_pred             EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         76 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        76 ~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      .|..+|.+.. .|....+.+|++++|.|.+.+.|.+  .+.|+|||..+..             ..+.|.|.+++.+|+|
T Consensus       339 ~V~~~~~~~~-~~~~~~v~~G~~v~l~C~~~g~p~~--~v~W~k~g~~~~~-------------~~~~L~i~~v~~~d~G  402 (816)
T 3dmk_A          339 TVTAPLSAKI-DPPTQTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAIGH-------------SESVLRIESVKKEDKG  402 (816)
T ss_dssp             EECEEEEEEE-ESSEEECCTTSCEEEEEEEEEECCC--EEEEEETTEECSC-------------CSSEEEESSCCGGGCE
T ss_pred             EEcCCCceee-CCCceEecCCCCEEEEEEEeccCCC--EEEEEECCEECCC-------------CCCEEEEcCCCHHHCE
Confidence            8876665544 4678889999999999999999876  5689999998854             2457999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCCCCCceE----EEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecc
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ----VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH  231 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~----~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~  231 (626)
                      .|+|.|.|..|.....+.|.+.....+|....    ........+.|.|....   .+..  .+.|..++..-  .....
T Consensus       403 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g---~p~p--~v~W~~~g~~l--~~~~~  475 (816)
T 3dmk_A          403 MYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGG---NPTP--EISWELDGKKI--ANNDR  475 (816)
T ss_dssp             EEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEEC---SSCC--EEEEEETTEEC--CSCTT
T ss_pred             EEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEec---CCCC--EEEEEECCEEC--CCCCC
Confidence            99999999999888888888865444442111    11223445666665321   1111  12222211100  00000


Q ss_pred             eeeeeeeccCCc--eeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEe
Q psy12061        232 VIGKEVDRYTGR--KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE  309 (626)
Q Consensus       232 ~~~~~~~~~~~~--~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~  309 (626)
                      ..........+.  ..+.+.+ +...+.+.|+|.|.|..|....+... .+...+..  ..+....+..  ...+.|.+.
T Consensus       476 ~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l-~V~~~p~~--~~~~~~~v~~--G~~v~l~C~  549 (816)
T 3dmk_A          476 YQVGQYVTVNGDVVSYLNITS-VHANDGGLYKCIAKSKVGVAEHSAKL-NVYGLPYI--RQMEKKAIVA--GETLIVTCP  549 (816)
T ss_dssp             EEEEEEECTTSCEEEEEEESS-CCTTTCEEEEEEEEETTEEEEEEEEE-EECSSCEE--CCCCCEEEET--TCCEEEECC
T ss_pred             cccccEEecCCCcEEEEEEee-ccccCCEEEEEEEEECCCeEEEEEEE-EEecCCee--EccCCeEEec--CCeEEEEEE
Confidence            000000000111  1344544 88999999999999998865332221 11111111  1222233332  356777776


Q ss_pred             eCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCc-ceeEEEEEEEEecCCCCCCC-CccEEEEccC
Q psy12061        310 PLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQAINDVGPGPE-SEVVTIFSAE  387 (626)
Q Consensus       310 ~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-p~~~Y~~~v~a~n~~g~~~~-s~~~~~~t~~  387 (626)
                      ..  .   .+  .-.+.|.+.+............   ....+.+.++. ......|+|.|.|..|.... +..+.+...+
T Consensus       550 ~~--g---~p--~~~i~W~k~~~~l~~~~~~~~~---~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p  619 (816)
T 3dmk_A          550 VA--G---YP--IDSIVWERDNRALPINRKQKVF---PNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP  619 (816)
T ss_dssp             EE--C---SS--EEEEEEEETTEESCCSTTEEEC---TTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCC
T ss_pred             ec--C---CC--CCEEEEEECCeEcccCCceEEe---cCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCC
Confidence            51  1   11  1267777665111000000001   11246677775 46677889999999885431 1112222222


Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc---ceEEEEecCccceEEEeCCccCce
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE---TAVYYLSRTTRNWALIVGLQPDTK  464 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p~t~  464 (626)
                      ......+....  ......+.|.+.......        ...+.|...+....   .............+.|.++.....
T Consensus       620 ~~~~~~~~~~~--~~~G~~v~L~C~~~~~~~--------~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~  689 (816)
T 3dmk_A          620 RIIPFAFEEGP--AQVGQYLTLHCSVPGGDL--------PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHA  689 (816)
T ss_dssp             CCBCCCCCSSC--EESSCEEEEEEBCCCSSS--------CCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGC
T ss_pred             ccccccccccc--cCCCCeEEEEEEEeCCCC--------CCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhC
Confidence            11111112222  234567778876542111        12344444332211   111112223334588999999888


Q ss_pred             EEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc-
Q psy12061        465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA-  543 (626)
Q Consensus       465 Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~-  543 (626)
                      ..++..|.|..|....+..+.+...+... ..|.+..+  .....+.|.-..  ...   +.  -.|.|...+...... 
T Consensus       690 G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~-~~~~~~~v--~~G~~v~l~C~~--~g~---P~--p~i~W~k~~~~~~~~~  759 (816)
T 3dmk_A          690 GNFTCHARNLAGHQQFTTPLNVYVPPRWI-LEPTDKAF--AQGSDAKVECKA--DGF---PK--PQVTWKKAVGDTPGEY  759 (816)
T ss_dssp             EEEEEEEECSSCEEEEEEEECEEEEEEEE-ECCCCEEE--ETTCCEEEECEE--EEE---SC--CEEECCEECSSSTTCC
T ss_pred             EEEEEEEEeCCccEEEEEEEEEEeCCcee-eeccccee--cCCCcEEEEEEE--ecC---CC--CeEEEEecCCCCCccc
Confidence            89999999988865433333332221111 12223222  223344444331  000   00  023333322211000 


Q ss_pred             -----cceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        544 -----NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       544 -----~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                           ......  ......|.++.+...=.++..|.|..|.+..+
T Consensus       760 ~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  802 (816)
T 3dmk_A          760 KDLKKSDNIRV--EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSA  802 (816)
T ss_dssp             BCCCCBTTEEE--ETTEEEECSCCGGGCEEEEEEEECSSSSCEEE
T ss_pred             cccccCCCEEe--cCCEEEECcCChhhCeEEEEEEEeCCCCCcEE
Confidence                 001111  22357888888888888889999999987633

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=3.8e-27  Score=255.55  Aligned_cols=431  Identities=18%  Similarity=0.182  Sum_probs=257.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe--
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH--   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--   79 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..+...       ++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..  
T Consensus       355 v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  427 (816)
T 3dmk_A          355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF  427 (816)
T ss_dssp             CCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSS
T ss_pred             ecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------CCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcccc
Confidence            578999999999999999999999999998643       45699999999999999999999999888888887742  


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC----CeEEEeecCCCCCE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFADAG  155 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~g  155 (626)
                      .|+.+...+....+.+|++++|.|.+.+.|.|  .+.|+++|..+........  ......+    ..|.|.+++.+|+|
T Consensus       428 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~v~W~~~g~~l~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G  503 (816)
T 3dmk_A          428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP--EISWELDGKKIANNDRYQV--GQYVTVNGDVVSYLNITSVHANDGG  503 (816)
T ss_dssp             CCCEEEEECCCEEECSSSCEEEEEEEECSSCC--EEEEEETTEECCSCTTEEE--EEEECTTSCEEEEEEESSCCTTTCE
T ss_pred             CCCceEecCcceEEcCCCCEEEEEEEecCCCC--EEEEEECCEECCCCCCccc--ccEEecCCCcEEEEEEeeccccCCE
Confidence            34444445677889999999999999999887  5699999999865421000  0000111    36999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK  235 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~  235 (626)
                      .|+|.|.|..|..+..+.|.|..+|...............+.|.|...   +.+..  .+.|..+        +..+...
T Consensus       504 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~---g~p~~--~i~W~k~--------~~~l~~~  570 (816)
T 3dmk_A          504 LYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVA---GYPID--SIVWERD--------NRALPIN  570 (816)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEE---CSSEE--EEEEEET--------TEESCCS
T ss_pred             EEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEec---CCCCC--EEEEEEC--------CeEcccC
Confidence            999999999999999999999988743222222334566777777642   12222  2333322        2211111


Q ss_pred             eeeccCCceeEEEEeecc-CCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCC
Q psy12061        236 EVDRYTGRKEASIENVLV-PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE  314 (626)
Q Consensus       236 ~~~~~~~~~~~~i~~~l~-~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~  314 (626)
                      ..........+.+.+ +. ..+.+.|+|.|.|..|..........+...+......+....+.  ....+.|.+....  
T Consensus       571 ~~~~~~~~~~l~i~~-v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~--~G~~v~L~C~~~~--  645 (816)
T 3dmk_A          571 RKQKVFPNGTLIIEN-VERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQ--VGQYLTLHCSVPG--  645 (816)
T ss_dssp             TTEEECTTSEEEESS-CCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEE--SSCEEEEEEBCCC--
T ss_pred             CceEEecCCeEEEEe-cCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccC--CCCeEEEEEEEeC--
Confidence            111111223455555 65 58899999999999885422111111112221111111222222  2467888887521  


Q ss_pred             CcccCcceEEEEEEecCCCcce--eeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCC
Q psy12061        315 KQNAPNIYYKIFWRKKNDTEFQ--SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQV  392 (626)
Q Consensus       315 ~~~~~~~~y~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~  392 (626)
                        +.+.  ..+.|...+.....  ...... .......+.+.++.......|+|.|.|..|....+..+.+...+..-. 
T Consensus       646 --~~~~--~~i~W~~~g~~l~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~-  719 (816)
T 3dmk_A          646 --GDLP--LNIDWTLDGQAISEDLGITTSR-VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWIL-  719 (816)
T ss_dssp             --SSSC--CEEEEEETTBCCCGGGTCEEEE-ETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEE-
T ss_pred             --CCCC--CEEEEEECCeEcCCCCCeeEEE-cCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceee-
Confidence              1111  25667766521100  000010 111335677888888889999999999988765444443332211111 


Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc--------ceEEEEecCccceEEEeCCccCce
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE--------TAVYYLSRTTRNWALIVGLQPDTK  464 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~L~p~t~  464 (626)
                      .|....+  .....+.|.-.....+.         -.|.|...+....        ......   ....+.|.++.....
T Consensus       720 ~~~~~~v--~~G~~v~l~C~~~g~P~---------p~i~W~k~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~  785 (816)
T 3dmk_A          720 EPTDKAF--AQGSDAKVECKADGFPK---------PQVTWKKAVGDTPGEYKDLKKSDNIRV---EEGTLHVDNIQKTNE  785 (816)
T ss_dssp             CCCCEEE--ETTCCEEEECEEEEESC---------CEEECCEECSSSTTCCBCCCCBTTEEE---ETTEEEECSCCGGGC
T ss_pred             eccccee--cCCCcEEEEEEEecCCC---------CeEEEEecCCCCCccccccccCCCEEe---cCCEEEECcCChhhC
Confidence            2222222  12333444333211000         0233322211100        000011   122477888888777


Q ss_pred             EEEEEEEeeCCCCCCCC
Q psy12061        465 YYVKVMAYNNAGEGPES  481 (626)
Q Consensus       465 Y~v~V~a~~~~g~s~~s  481 (626)
                      -.++..|.|..|....+
T Consensus       786 G~Y~C~a~N~~G~~~~~  802 (816)
T 3dmk_A          786 GYYLCEAINGIGSGLSA  802 (816)
T ss_dssp             EEEEEEEECSSSSCEEE
T ss_pred             eEEEEEEEeCCCCCcEE
Confidence            77788899999875433

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.96  E-value=5.3e-27  Score=209.29  Aligned_cols=200  Identities=23%  Similarity=0.304  Sum_probs=160.7

Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEE
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      ++|+.+|.++++...+.+++.|+|++|.......++.+.+|.|+|+..+........  .......+.+.+|+|++.|.|
T Consensus         2 d~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~   79 (211)
T 3p4l_A            2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN--ANATTLSYLVTGLKPNTLYEF   79 (211)
T ss_dssp             -CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEE--EEESSSEEEECSCCTTCEEEE
T ss_pred             CCCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEE--eCCCceEEEecCcCCCCEEEE
Confidence            467779999999999999999999998654333347799999999876654333222  234556799999999999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC--CCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN--PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND  545 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~--~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~  545 (626)
                      +|+|.|..|.|++|..+.++|.+..|+.+|.++++...+  .+++.|+|+  +|...+|.|.+|.|+|+..+........
T Consensus        80 ~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~~~~~  157 (211)
T 3p4l_A           80 SVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAEIHDWV  157 (211)
T ss_dssp             EEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEE--CCTTCCSCCCEEEEEEESCTTSCGGGSE
T ss_pred             EEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEEC--CCCCCCCCEEEEEEEEEECCCCCCCceE
Confidence            999999999999999999999999888799999988874  789999999  5677889999999998765544322223


Q ss_pred             eeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       546 ~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      ......+.+.+.|.+|.|++.|.|+|+|+|..|.|++|+++ .+.+.
T Consensus       158 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v-~~~~~  203 (211)
T 3p4l_A          158 IEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV-QFRTP  203 (211)
T ss_dssp             EEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCE-EEECC
T ss_pred             EEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE-EccCc
Confidence            34456788999999999999999999999999999999765 45554

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.96  E-value=5.8e-27  Score=223.56  Aligned_cols=274  Identities=14%  Similarity=0.161  Sum_probs=194.8

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .++..+.+..|++++|.|.+.+.+. ...|.|++++..+...      ..+....++.|.|.+++..|+|.|+|.   ..
T Consensus        11 ~p~~~v~~~~G~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~   80 (325)
T 1n26_A           11 VARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGSH------PSRWAGMGRRLLLRSVQLHDSGNYSCY---RA   80 (325)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTC-CSEEEEEEECSSSSCC------CEEEEEESSEEEECSCCGGGCEEEEEE---SS
T ss_pred             cCCCcEECCCCCcEEEEeCCCCCCC-CceEEEEECCccCCcc------ccccccccceEEecccchhhCeEeEEE---eC
Confidence            3455566689999999999987652 2467999988765221      134445678999999999999999999   37


Q ss_pred             CceEEEEEEEEeCCCCCCCceEEEE-EeccceEEEEecCCCCCCcccEEEEEEeec-CC--CCc-eEeecceeeeeeecc
Q psy12061        166 GKISTKTTVIVEGPPGLPGGVQVVE-VHKTSATIQWTDGATNGRPITHYKIIARTN-WN--STW-FNVSEHVIGKEVDRY  240 (626)
Q Consensus       166 g~~~~~~~l~v~~~P~~p~~~~~~~-~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~-~~--~~w-~~~~~~~~~~~~~~~  240 (626)
                      |.....+.|.|..+|..|. +.|.. ....++.+.|+++.+++ ....|.+.++.. +.  ..| ..+..       ...
T Consensus        81 g~~~~~~~L~V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~-~~~~y~l~~~~~~~~~~~~~~~~c~~-------~~~  151 (325)
T 1n26_A           81 GRPAGTVHLLVDVPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPS-LTTKAVLLVRKFQNSPAEDFQEPCQY-------SQE  151 (325)
T ss_dssp             SSCSCEEEEEECCCCCCCC-CEEEBSSTTSCEEEEECCSSCCC-TTCEEEEEEEEESSSSCEEEEEEEEE-------ETT
T ss_pred             CEEeeeEEEEeccCCCCCc-eeEEeecCCCcEEEEECCCCCCC-CCceEEEEEEEccCCCCCcccccCCC-------CCC
Confidence            8888899999999999998 88763 33678999999876655 347899887754 21  122 11110       001


Q ss_pred             CCceeEEEEeecc-CCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCC--cCeEEEEEeeCCCCCcc
Q psy12061        241 TGRKEASIENVLV-PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK--IGDLSISWEPLPREKQN  317 (626)
Q Consensus       241 ~~~~~~~i~~~l~-~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~--~~~v~l~W~~~~~~~~~  317 (626)
                      .+...+.+.. +. +++.|.|+|.|.|..|.+.. ... .+......++.+|.++.+...+  .+++.|+|+++...+.+
T Consensus       152 ~~~~~c~i~~-~~~~~~~Y~f~v~A~N~~G~~~s-~~~-~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~  228 (325)
T 1n26_A          152 SQKFSCQLAV-PEGDSSFYIVSMCVASSVGSKFS-KTQ-TFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSS  228 (325)
T ss_dssp             TTEEEEEECC-CTTCCCEEEEEEEEEETTEEEEC-CCE-EEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCS
T ss_pred             CCCEEEEECC-CcccCcEEEEEEEEEcCCCCccc-CcE-EEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCC
Confidence            2333455544 54 78999999999999997642 221 2233333445788899887654  36999999995443356


Q ss_pred             cCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCC---ccEEEEc
Q psy12061        318 APNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES---EVVTIFS  385 (626)
Q Consensus       318 ~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s---~~~~~~t  385 (626)
                      +.+.+|.|+|+..+...|......    .....+.+.+|.|++.|.|+|+|.|..|.|.||   ..+..++
T Consensus       229 ~~~~~Y~V~yr~~~~~~W~~~~~~----~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~  295 (325)
T 1n26_A          229 FYRLRFELRYRAERSKTFTTWMVK----DLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP  295 (325)
T ss_dssp             SSCEEEEEEEEETTCSCCEEEECG----GGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECC
T ss_pred             cEeEEEEEEEEeCCCCCCEEEccc----CCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceec
Confidence            678999999999887788765432    123467899999999999999999988866555   4444443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=1.5e-24  Score=226.07  Aligned_cols=451  Identities=16%  Similarity=0.126  Sum_probs=257.1

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEeCCEEcc--------------CCCcEEEcc---CC--cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIG--------------SGGRRKIFE---NG--NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~i~--------------~~~~~~~~~---~g--~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++++|.|.+.+.|.|   .|.|+|++..+.              ..+|+.+..   +|  +|.|.+++.+|+|.|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~   91 (585)
T 2ocw_A           12 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYK   91 (585)
T ss_pred             EecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEE
Confidence            6789999999999998754   899999885321              135666653   33  5999999999999999


Q ss_pred             EEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc----c-c-CCccC
Q psy12061         60 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN----M-D-LNELE  133 (626)
Q Consensus        60 C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~----~-~-~~~~~  133 (626)
                      |.|.|..|.....+.|.|..+|.+.. .+....+.+|++++|.|.+.+.+++ ..+.|+|++.....    . . .....
T Consensus        92 C~~~n~~~~~~~~~~l~V~~~p~~~~-~~~~~~v~~G~~v~l~C~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~  169 (585)
T 2ocw_A           92 CGLGINSRGLSFDVSLEVSQGPGLLN-DTKVYTVDLGRTVTINCPFKTENAQ-KRKSLYKQIGLYPVLVIDSSGYVNPNY  169 (585)
T ss_pred             EEcccCCCCceEEEEEEEecCccccC-CCccEEEEcCCCEEEEEEecCCCCC-ccEEEEECCCCCceEEecCCcccCccc
Confidence            99999998888889999988887654 5788899999999999999976543 35699998764211    0 0 00000


Q ss_pred             CCeeEe--cCC-----eEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCC
Q psy12061        134 TPNINI--DGG-----LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN  206 (626)
Q Consensus       134 ~~~~~~--~~~-----~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~  206 (626)
                      ..++.+  .+.     .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|  |..+.  ......+.|.|..... 
T Consensus       170 ~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~--p~~~~--~~~G~~v~l~C~~~~~-  244 (585)
T 2ocw_A          170 TGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE--PELVY--EDLRGSVTFHCALGPE-  244 (585)
T ss_pred             cCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC--CceeE--EcCCCcEEEEEEcCCC-
Confidence            123322  222     79999999999999999999999999999999998754  32222  2345567777774211 


Q ss_pred             CCcccEEEEEEe-ecCCC---CceE-------eecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCC-
Q psy12061        207 GRPITHYKIIAR-TNWNS---TWFN-------VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS-  274 (626)
Q Consensus       207 ~~~~~~y~v~~~-~~~~~---~w~~-------~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s-  274 (626)
                       .+. .-.+.+. .++..   ....       ......... ....+...+.+.+ +...+.+.|+|.|.|. |....+ 
T Consensus       245 -~~~-~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~L~i~~-v~~~d~G~Y~C~a~n~-g~~~~~~  319 (585)
T 2ocw_A          245 -VAN-VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP-QDKDGSFSVVITG-LRKEDAGRYLCGAHSD-GQLQEGS  319 (585)
T ss_pred             -CCC-ceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeec-cCCCcEEEEEEcc-CChhhCEEEEEEEEcC-CCccccC
Confidence             111 1122222 11110   0000       000000000 0001222566665 9999999999999995 333211 


Q ss_pred             --C-CCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEe--cCCC-cce------------
Q psy12061        275 --S-PSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK--KNDT-EFQ------------  336 (626)
Q Consensus       275 --~-~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~--~~~~-~~~------------  336 (626)
                        . ....+...+..+ ..|..+.+..+  ..+.|.+...  . ...+...|.+.|.+  .+.. ...            
T Consensus       320 ~~~~~~l~V~~~p~~~-~~~~~~~~~~G--~~v~l~C~~~--~-~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~  393 (585)
T 2ocw_A          320 PIQAWQLFVNEESTIP-RSPTVVKGVAG--SSVAVLCPYN--R-KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG  393 (585)
T ss_pred             ceeeEEEEEecccccc-cCCcceEEEeC--CcEEEEEecC--C-CCCccEEEEEEEEccCCCCCceeeeecceeecccCC
Confidence              1 111122222222 23445554443  4466666541  1 11223345556665  3320 000            


Q ss_pred             eeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccc
Q psy12061        337 SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIEL  416 (626)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~  416 (626)
                      ..............+.|.++.......|+|.| |..|....+..+.+...+.... .|..+.  ......+.|.+.....
T Consensus       394 r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~-~~~~~~--v~~G~~v~L~C~~~~~  469 (585)
T 2ocw_A          394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK-VPGNVT--AVLGETLKVPCHFPCK  469 (585)
T ss_pred             CEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccc-cCCcee--EecCCcEEEEEEecCC
Confidence            00000000123345778888877777888888 8776543333333332111111 233333  3345667888865421


Q ss_pred             cccccceeeEEEEEEEEecCCCccc-------eEEEEe--cCccceEEEeCCccCceEEEEEEEeeCCCCCC
Q psy12061        417 IRENIRGRLIGHRIKYWKEDNPEET-------AVYYLS--RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP  479 (626)
Q Consensus       417 ~~~~~~~~i~~Y~v~~~~~~~~~~~-------~~~~~~--~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~  479 (626)
                      ...     .-.+.|.|...+.....       ......  ......+.|.++.....-.++..|.|..|.+.
T Consensus       470 ~~~-----~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  536 (585)
T 2ocw_A          470 FSS-----YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGE  536 (585)
T ss_pred             CCC-----CccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccE
Confidence            100     11345666554422100       001111  12224578888888766677788889887644

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.95  E-value=6.3e-27  Score=229.75  Aligned_cols=340  Identities=19%  Similarity=0.266  Sum_probs=202.3

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccC-CCCCCEEEEEEEEcCCCCce-eeEEEEEE
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPV-SRDDSGIYSCTATNVHGMDE-SKGRLIVL   78 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v-~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~   78 (626)
                      .+|+.++|.|.+.|.|.|+|.|+|||.+|...  .++. ..+|+|.|.++ +.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus        21 ~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~-~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~   99 (384)
T 3kld_A           21 SEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYS-VVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA   99 (384)
T ss_dssp             CSCSEEEECCEEEEESCCEEEEEETTEECCC----CEE-EETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEE-EECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEe
Confidence            58999999999999999999999999999743  3444 35778888876 67899999999999999854 45788887


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEY  157 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y  157 (626)
                      ..+.+...++....+.+|+.+.|.|.+.... +.+.+.|++++.++....      .+.. ..++.|.|.+++.+|+|.|
T Consensus       100 ~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~------~~~~~~~~~~L~I~~v~~~D~G~Y  172 (384)
T 3kld_A          100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHS-GELSYAWIFNEYPSYQDN------RRFVSQETGNLYIAKVEKSDVGNY  172 (384)
T ss_dssp             EECCCSCCCCCCEEEEETCCEEECCCCCSEE-SCEEEEEEETTEECCCSS------SEEECTTTCCEEESSCCGGGCEEE
T ss_pred             cccccccCCCCceeEEcCCCeEEecCCCCCC-CCeEEEEEECCCCCEeec------cEEEEcCCCcEEEeecCHHHCceE
Confidence            7776666566778999999999999754322 235779999998875332      2222 3567899999999999999


Q ss_pred             EEEEEeCCCceEE---EEEEEEeC-------CCC----CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCC
Q psy12061        158 ECVVKSTVGKIST---KTTVIVEG-------PPG----LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS  223 (626)
Q Consensus       158 ~C~a~n~~g~~~~---~~~l~v~~-------~P~----~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~  223 (626)
                      +|.|.|..|....   ...+.+..       +|.    .|..+  .......+.|.|..             ...+....
T Consensus       173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~--~~~~G~~v~l~C~~-------------~g~P~p~i  237 (384)
T 3kld_A          173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV--PAEKGTTVKLECFA-------------LGNPVPTI  237 (384)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEE--EEETTSCEEEEEEE-------------EEESCCEE
T ss_pred             EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCce--EecCCCcEEEEEEE-------------eecCCCcE
Confidence            9999999876432   11222210       010    11111  11223344444442             11111112


Q ss_pred             CceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCe
Q psy12061        224 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD  303 (626)
Q Consensus       224 ~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~  303 (626)
                      .|.+..................+.|.+ +...+.+.|+|.|.|..|........ .+...+.. ...+.+..+...  ..
T Consensus       238 ~W~k~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~l-~v~~~P~~-~~~~~~~~v~~g--~~  312 (384)
T 3kld_A          238 LWRRADGKPIARKARRHKSNGILEIPN-FQQEDAGSYECVAENSRGKNVAKGQL-TFYAQPNW-VQIINDIHVAME--ES  312 (384)
T ss_dssp             EEEETTCCCCCTTCEECTTSCEEEECS-CCGGGCEEEEEEEEETTEEEEEEEEE-EEEEEEEE-EECCCCEEECTT--CC
T ss_pred             EEEeCCCccccccceecCCCcEEEECC-CChhhCEEEEEEEEcCCCeEEEEEEE-EEecCCcc-ccCCCceEecCC--CC
Confidence            232211110000000011223466655 99999999999999999865322211 11111100 012223333332  34


Q ss_pred             EEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccE
Q psy12061        304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV  381 (626)
Q Consensus       304 v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  381 (626)
                      +.|.....    + .+.-  .|.|.+.+..-........    ....+.|..+.......|+|.|.|..|....+..+
T Consensus       313 v~l~C~~~----g-~P~p--~i~W~k~g~~l~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L  379 (384)
T 3kld_A          313 VFWECKAN----G-RPKP--TYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL  379 (384)
T ss_dssp             EEEECEEE----E-ESCC--EEEEEETTEECCCBTTEEE----ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEeECC----c-cCCC--eEEEEECCEECCCCccEEE----eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEE
Confidence            55544431    1 1111  4667666521100000010    11256788888778888999999999875433333

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.95  E-value=1.4e-25  Score=221.73  Aligned_cols=365  Identities=13%  Similarity=0.159  Sum_probs=224.5

Q ss_pred             CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCC------------CCceEeecceeeeeeeccCCceeEEEE
Q psy12061        182 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN------------STWFNVSEHVIGKEVDRYTGRKEASIE  249 (626)
Q Consensus       182 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~------------~~w~~~~~~~~~~~~~~~~~~~~~~i~  249 (626)
                      +|.++.|.......+++.|+++.+.... ..|.+.++....            ..|.......        .....+.+.
T Consensus         5 ~~~~l~C~~~~~~~~~C~W~~~~~~~~~-~~~~l~y~~~~~~~~~~~C~~~~~~~~~~~~~~~--------~~~~~C~~~   75 (419)
T 2gys_A            5 PLQTLRCYNDYTSHITCRWADTQDAQRL-VNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPR--------CVPRRCVIP   75 (419)
T ss_dssp             HHHHCEEEECSSSEEEEEEEEEHHHHTT-CCEEEEEEEETTEEEECCEEECSCCTTSCCCSSS--------EEEEEEEEE
T ss_pred             cCCCceEEeCCCEEEEEEeeCCcCCCCc-ccEEEEeecCCcCCccceeccccCcccccCCCCC--------ccccEeEeC
Confidence            4668889888888999999976432222 346666653211            1111110000        001233332


Q ss_pred             -eeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCc----ccCcceEE
Q psy12061        250 -NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ----NAPNIYYK  324 (626)
Q Consensus       250 -~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~----~~~~~~y~  324 (626)
                       ..+.....|.|+|+|.|..|...      .+.......+.||.++.+.... ..+.|+|++++....    ......|.
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~  148 (419)
T 2gys_A           76 CQSFVVTDVDYFSFQPDRPLGTRL------TVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFE  148 (419)
T ss_dssp             CSCCCTTCEEEEEEEESSCCCEEE------EEEGGGSBCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEE
T ss_pred             CcceeeecccEEEEeCCccccccc------eEcHHHcccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEE
Confidence             12455678999999988776432      2233333455789999887755 699999999654332    13568899


Q ss_pred             EEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCC------CCCCCccEEEEccCCCCCCCCCceE
Q psy12061        325 IFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG------PGPESEVVTIFSAEDMPQVAPQGVF  398 (626)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g------~~~~s~~~~~~t~~~~p~~~p~~~~  398 (626)
                      |+|+..+ ..|...... ..+.....+.+.+|.|++.|.|+|+|.+..|      .|.||..+.+.+.+..|. +|.++.
T Consensus       149 v~yr~~~-~~w~~~~~~-~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~-~p~~l~  225 (419)
T 2gys_A          149 VVYKRLQ-DSWEDAAIL-LSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEA-QPQNLE  225 (419)
T ss_dssp             EEEEETT-SCSTTCEEE-EESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTT-SCEEEE
T ss_pred             EEEccCC-CChhheeee-cccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccC-CCceEE
Confidence            9999886 677655432 1122223333448999999999999999642      345677888888887765 899999


Q ss_pred             EEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-----ccce---EEEEecC------ccceEEEeCCccCce
Q psy12061        399 SRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-----EETA---VYYLSRT------TRNWALIVGLQPDTK  464 (626)
Q Consensus       399 ~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-----~~~~---~~~~~~~------~~~~~~i~~L~p~t~  464 (626)
                      +...+.+.+.+.|+++....    + -.+|.|+|+.....     ....   .......      ....+.+.+|.+.+.
T Consensus       226 c~~~~~~~l~c~W~~~~~~~----~-~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~  300 (419)
T 2gys_A          226 CFFDGAAVLSCSWEVRKEVA----S-SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQ  300 (419)
T ss_dssp             EEECSSSEEEEEEEEEHHHH----T-TCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCE
T ss_pred             EEECCceEEEeEEECCCCCC----C-ceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCE
Confidence            99888999999999863211    1 13599998765321     1110   1111101      112466788899999


Q ss_pred             EEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccc
Q psy12061        465 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN  544 (626)
Q Consensus       465 Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~  544 (626)
                      |.|+|.|.+..+        .+.....+.+.|| .+.+.. ..+.+.|+|++|.....+ .+.+|+|.|+..+..+.. .
T Consensus       301 y~i~V~a~~~~~--------~~~~~~~v~p~PP-~l~v~~-~~~~l~l~W~~P~~~~~~-~~l~Yev~y~~~~~~w~~-~  368 (419)
T 2gys_A          301 YIVSVQPRRAEK--------HIKSSVNIQMAPP-SLQVTK-DGDSYSLRWETMKMRYEH-IDHTFEIQYRKDTATWKD-S  368 (419)
T ss_dssp             EEEEEEECCCCE--------EEEGGGSBCCCCC-EEEEC----CCCEEEEEC---------CEEEEEEEECSSSCSTT-S
T ss_pred             EEEEEEEccCCc--------cccceEEEEECCC-CeEEEE-eCCeEEEEECCCcccccc-cceEEEEEEEcCCCCcce-e
Confidence            999999875432        1222333345566 566555 478999999953222223 567999999876543221 1


Q ss_pred             ceeeecCccceEEecCCCCCceEEEEEEEEecCC--CCCCC
Q psy12061        545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG--DGRMS  583 (626)
Q Consensus       545 ~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G--~g~~s  583 (626)
                      ...... +.+.+.|.+|+|++.|.|+|+|.+..|  .|.+|
T Consensus       369 ~~~~~~-~~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS  408 (419)
T 2gys_A          369 KTETLQ-NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWS  408 (419)
T ss_dssp             CEEEEE-SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCC
T ss_pred             eccccc-cccEEEeccCCCCCeEEEEEEEEEcCCCCCCccC
Confidence            122222 678899999999999999999999874  45343

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.95  E-value=1.2e-26  Score=228.97  Aligned_cols=286  Identities=15%  Similarity=0.118  Sum_probs=191.1

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.++.+.... ..+.|+|+++  .+.++++. |.|+|+..+...|...............++..+|.+++.|.|||+|
T Consensus         9 ~~P~nv~~~~~~-~~~~L~W~p~--~~~~~~i~-Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~A   84 (414)
T 3se4_A            9 KSPQKVEVDIID-DNFILRWNRS--DESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRA   84 (414)
T ss_dssp             --CCCCCEEEET-TEEEEC------------CE-EEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEEE
T ss_pred             CCCceeEEEEEC-CceEEEEcCC--CCCCCCeE-EEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEEE
Confidence            467888887654 5789999994  34455666 9999998777788754322222223445556678999999999999


Q ss_pred             ecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccc---cceeeEEEEEEEEecCCCccceEEE
Q psy12061        369 INDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN---IRGRLIGHRIKYWKEDNPEETAVYY  445 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~  445 (626)
                      .| .+.+.++....+.+....+.++| .+.+... .+++.|+|+ |...+..   .++.+.+|.|.||+.+......   
T Consensus        85 ~n-~~~S~~s~~~~~~~~~~~~~~pP-~v~~~~~-~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~~~---  157 (414)
T 3se4_A           85 EK-ENTSSWYEVDSFTPFRKAQIGPP-EVHLEAE-DKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVEER---  157 (414)
T ss_dssp             EE-TTEEEEEECCCBCHHHHCCCCCC-EEEEEEC-SSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCEEE---
T ss_pred             ee-CCcCCCEecCceeecccceeCCC-eEEEEEc-CCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCceEE---
Confidence            99 66655544333333333444466 4776654 468999999 6533210   2357889999999887654322   


Q ss_pred             EecCccceEEEeCCccCceEEEEEEEeeC--CCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCC
Q psy12061        446 LSRTTRNWALIVGLQPDTKYYVKVMAYNN--AGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE  523 (626)
Q Consensus       446 ~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~--~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~  523 (626)
                       .......+.|.+|.|++.|.|+|+|.|.  .|.|+.|....+.|.++.|..+|.++.+...+ +++.|.|++  |.   
T Consensus       158 -~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~p--p~---  230 (414)
T 3se4_A          158 -IENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDY--TY---  230 (414)
T ss_dssp             -EEEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEEC--SS---
T ss_pred             -EecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECC--CC---
Confidence             1234456999999999999999999994  68888888888888887787889999988765 679999994  32   


Q ss_pred             CceeeEEEEEEEec-----cCCcccccee--eecCccceEEec-CCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        524 EPIIGYKVRVWEVD-----QDMSRANDTI--IPVGNTLDADIV-DLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       524 ~~i~~Y~i~~~~~~-----~~~~~~~~~~--~~~~~~~~~~l~-~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +. .+|.|+|+...     .+....+..+  ......+.+.+. +|.+++.|.|+|+|+|..|.|++|+. ..|.+...
T Consensus       231 ~~-~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~-~~~~t~~~  307 (414)
T 3se4_A          231 AN-MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE-IKFDTEIQ  307 (414)
T ss_dssp             SS-CEEEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCC-EEEETTCC
T ss_pred             CC-eEEEEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCccccccc-ccccchhc
Confidence            22 39999998631     0000011111  112234566675 69999999999999999999999965 45655543

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.94  E-value=9.5e-26  Score=200.10  Aligned_cols=196  Identities=19%  Similarity=0.257  Sum_probs=152.6

Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCccceEEEeCCccCceEE
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      +.|. +|.++++.. +.+++.|+|+++.+.+    +.|.+|.|+|+..... .+.............+.+ +|+|++.|.
T Consensus         4 ~~P~-~P~~~~~~~-~~~sv~l~W~~p~~~~----~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~   76 (205)
T 1cfb_A            4 DVPN-APKLTGITC-QADKAEIHWEQQGDNR----SPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYT   76 (205)
T ss_dssp             CCCC-CCEEEEEEE-CSSEEEEEEECCCCTT----SCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEE
T ss_pred             cCCC-CCCCcEEEe-cCCEEEEEEECcccCC----CceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEE
Confidence            4455 899999999 9999999999985432    6799999999765432 232222233344455776 999999999


Q ss_pred             EEEEEeeCCCCCCCC-ccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc
Q psy12061        467 VKVMAYNNAGEGPES-ERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND  545 (626)
Q Consensus       467 v~V~a~~~~g~s~~s-~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~  545 (626)
                      |+|+|.|..|.|+++ ....++|.+..|+.+|.++++...+.+++.|+|++++..+.+|.|.+|.|+|+..+....  ..
T Consensus        77 ~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~--~~  154 (205)
T 1cfb_A           77 FRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAA--WE  154 (205)
T ss_dssp             EEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCC--CE
T ss_pred             EEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCC--cE
Confidence            999999999999988 568899999999888999999988999999999954433788999999999887655421  22


Q ss_pred             ee-eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        546 TI-IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       546 ~~-~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      .. ......+.+.|.+|.|++.|.|+|+|+|..|.|++++..+.+++.
T Consensus       155 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~  202 (205)
T 1cfb_A          155 NNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG  202 (205)
T ss_dssp             EEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESS
T ss_pred             EEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecC
Confidence            22 223367899999999999999999999999999965444545554

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.94  E-value=6.1e-26  Score=225.14  Aligned_cols=341  Identities=19%  Similarity=0.284  Sum_probs=214.0

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccC--CCcEEEccCCcEEEccC-----CCCCCEEEEEEEEcCCCCc--ee
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPV-----SRDDSGIYSCTATNVHGMD--ES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~--~~~~~~~~~g~L~i~~v-----~~~d~G~Y~C~a~n~~g~~--~~   71 (626)
                      +.+|++++|.|.+.+ .|.+.|.|+|||..+..  ..+..+..+++|.|.++     +.+|+|.|+|.|.|..+..  ..
T Consensus        33 v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~  112 (403)
T 3laf_A           33 TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR  112 (403)
T ss_dssp             ECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECC
T ss_pred             EecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEE
Confidence            578999999999977 58889999999999863  57888888999999998     6779999999999754432  33


Q ss_pred             eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC
Q psy12061         72 KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF  151 (626)
Q Consensus        72 ~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  151 (626)
                      .+.+.|..+|.+. ..+....+.+|++++|.|.+.+.|.+  .+.|+|++..+....   .........++.|.|.+++.
T Consensus       113 ~~~l~v~~p~~~~-~~~~~~~~~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~  186 (403)
T 3laf_A          113 TAKVMVAGPLRFL-SQTESITAFMGDTVLLKCEVIGDPMP--TIHWQKNQQDLNPIP---GDSRVVVLPSGALQISRLQP  186 (403)
T ss_dssp             CEEEEECCCCEEC-SCCCCEEEETTSCEEECCCEECSSCC--EEEEEESSSBCCCCT---TCCSEEECTTSCEEECSCCG
T ss_pred             EEEEEecCCCccc-cCCCcEEEEcCCeEEEEEEEcccCCC--eEEEEECCEeccccC---CceEEEEcCCceEEEccccc
Confidence            4677776655554 45778899999999999999998876  569999998875321   01122334567999999999


Q ss_pred             CCCEeEEEEEEeCCCce-EEEEEEEEeCCCCCCCceEEE-------EEeccceEEEEecCCCCCCcccEEEEEEeecCCC
Q psy12061        152 ADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVV-------EVHKTSATIQWTDGATNGRPITHYKIIARTNWNS  223 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~~~~~-------~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~  223 (626)
                      +|+|.|+|.+.|..|.. +..+.+.+...|..+..+...       ......+.|.|..             ...+....
T Consensus       187 ~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-------------~~~p~~~~  253 (403)
T 3laf_A          187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-------------SGYPPPSF  253 (403)
T ss_dssp             GGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE-------------EEESCCEE
T ss_pred             ccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc-------------CCCCCCeE
Confidence            99999999999988764 466788888777654333221       1223445555442             22122222


Q ss_pred             CceEeecceeeee-eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcC
Q psy12061        224 TWFNVSEHVIGKE-VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG  302 (626)
Q Consensus       224 ~w~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~  302 (626)
                      .|.+....+.... .........+.+.+ +...+.+.|+|.|.|..|....+... .+..++.. ...|.+..+..  ..
T Consensus       254 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l-~V~~~p~~-~~~~~~~~~~~--g~  328 (403)
T 3laf_A          254 TWLRGEEVIQLRSKKYSLLGGSNLLISN-VTDDDSGTYTCVVTYKNENISASAEL-TVLVPPWF-LNHPSNLYAYE--SM  328 (403)
T ss_dssp             EEEETTEECCCSSSSEEEETTTEEEECS-CCGGGCEEEEEEEEETTEEEEEEEEE-EEEEEEEE-EECCCCEECCT--TC
T ss_pred             EEEECCeeccCCCceEEECCccEEEEeC-CCHHHCEEEEEEEEcCCCceEEEEEE-EEECCCcE-eecCcceEEec--CC
Confidence            3443322211100 00001223456655 99999999999999998854322221 11111110 11233333333  23


Q ss_pred             eEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        303 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       303 ~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                      .+.|.....    +. +..  .+.|.+.+............   ....+.+.++.......|+|.|.|..|...
T Consensus       329 ~v~l~C~~~----g~-p~p--~v~W~~~g~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  392 (403)
T 3laf_A          329 DIEFECAVS----GK-PVP--TVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQ  392 (403)
T ss_dssp             CEEECCEEE----EE-SCC--EEEEEETTEECCCSSSEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEEEEEe----ec-cCC--EEEEEECCEECCCCCcEEEe---cCccEEEeccccccCEEEEEEEEcCCceEE
Confidence            455555431    11 111  46776665211000000000   112466778877777889999999988754

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.94  E-value=2.9e-26  Score=202.36  Aligned_cols=163  Identities=20%  Similarity=0.343  Sum_probs=130.5

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|+.++|.|.+.+ .|.|+|.|+|||.+|..+.++.+..++     +|.|.+++.+|+|.|+|.|.|  |.....+.+
T Consensus        14 v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~   91 (207)
T 3rbs_A           14 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTV   91 (207)
T ss_dssp             ECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEEEE
T ss_pred             EEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEEEE
Confidence            578999999999964 799999999999999887777775443     599999999999999999999  554544444


Q ss_pred             EEE---------------------eCCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCCccC
Q psy12061         76 IVL---------------------HGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELE  133 (626)
Q Consensus        76 ~v~---------------------~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~  133 (626)
                      .+.                     .+|.+... + +..+.+|++++|.|.+.+. |.|  +|.|+|||.++....     
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~-~~~v~~g~~v~l~C~v~g~~P~p--~i~W~k~g~~l~~~~-----  162 (207)
T 3rbs_A           92 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-L-SWEVTGECNVLLKCKVANIKKET--HIVWYKDEREISVDE-----  162 (207)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE-E-EEEEETTTEEEEEEEEESCCTTC--EEEEEETTEEECCCC-----
T ss_pred             EEEccchhhhcccccccccccccCCCCceEec-C-CcEEcCCCcEEEEEEEeCCCCCC--EEEEEECCEECCCCC-----
Confidence            321                     14554443 2 4788999999999999998 776  558999999997642     


Q ss_pred             CCeeEe--cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        134 TPNINI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       134 ~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                        ++..  ....|.|.+++.+|+|.|+|.|.|..|..+..+.|..+
T Consensus       163 --~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          163 --KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             --CCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             --ceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence              2222  23469999999999999999999999999999888653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.94  E-value=6.5e-26  Score=202.67  Aligned_cols=175  Identities=26%  Similarity=0.500  Sum_probs=144.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc-CCCcEEEcc--CC--cEEEccCCC-CCCEEEEEEEEcCCCC-ceeeEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFE--NG--NLLISPVSR-DDSGIYSCTATNVHGM-DESKGR   74 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~-~~~~~~~~~--~g--~L~i~~v~~-~d~G~Y~C~a~n~~g~-~~~~~~   74 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+. ...++.+..  +|  +|.|.+++. +|+|.|+|.|.|..|. ....+.
T Consensus        18 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~   97 (212)
T 2yd1_A           18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADAT   97 (212)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEE
T ss_pred             EecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEE
Confidence            5789999999999999999999999999997 556666643  33  699999999 9999999999999998 677889


Q ss_pred             EEEEeCC------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEee
Q psy12061         75 LIVLHGP------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN  148 (626)
Q Consensus        75 l~v~~~p------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  148 (626)
                      |.|...+      +.+...+....+..|++++|.|.+.+.|.|  .+.|++++..+....      .++...++.|.|.+
T Consensus        98 l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~------~~~~~~~~~L~i~~  169 (212)
T 2yd1_A           98 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSN------PRYSLKDGFLQIEN  169 (212)
T ss_dssp             EEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCC--EEEEEETTEECCTTS------TTEEEETTEEEECS
T ss_pred             EEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCC--eEEEEECCeEcccCC------CeEEccCCeEEEcc
Confidence            9998752      233345677889999999999999999877  469999999987542      45566778999999


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEE-EEEEEeCCCCCCC
Q psy12061        149 ASFADAGEYECVVKSTVGKISTK-TTVIVEGPPGLPG  184 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~-~~l~v~~~P~~p~  184 (626)
                      ++.+|+|.|+|.|.|..|..... +.|.|...+..+.
T Consensus       170 v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~~  206 (212)
T 2yd1_A          170 SREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK  206 (212)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C--
T ss_pred             CChhhCEEEEEEeecCCCceeEEEEEEEEEecccccc
Confidence            99999999999999999998765 8999998776553

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.94  E-value=1e-25  Score=221.60  Aligned_cols=335  Identities=18%  Similarity=0.229  Sum_probs=206.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCC-CCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDES-KGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~-~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|+|.|+|||..|...  .++.+ .+++|.|.++.. +|+|.|+|.|.|..|...+ .+.|.|
T Consensus        19 ~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~-~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v   97 (382)
T 1cs6_A           19 GSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL-VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF   97 (382)
T ss_dssp             TCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE-ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEe-eCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEe
Confidence            368999999999999999999999999998743  55554 578899999997 9999999999999887544 578888


Q ss_pred             EeCCceeeeCCCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCee-EecCCeEEEeecCCCCCE
Q psy12061         78 LHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNI-NIDGGLLEITNASFADAG  155 (626)
Q Consensus        78 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g  155 (626)
                      ...|.+...++....+.+|++++|.|.+. +.|.  ..+.|++++..+....    ...+. ...++.|.|.+++.+|+|
T Consensus        98 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~--~~i~W~~~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G  171 (382)
T 1cs6_A           98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA--LSYRWLLNEFPNFIPA----DGRRFVSQTTGNLYIAKTEASDLG  171 (382)
T ss_dssp             EEECCCCSSCCCCEEEETTSCEEECCCCCSEESC--CEEEEEESSTTCBCCC----CSSEEECTTTCCEEESSCCGGGCE
T ss_pred             eccccccccCCCceEEecCCcEEEEeCCCCCCCC--cEEEEEECCCcccccc----CceEEEecCceEEEEEeeCcccCe
Confidence            77777666667788999999999999964 4454  4679999987653211    01122 224578999999999999


Q ss_pred             eEEEEEEeCCCceEE-----EEEEEEeCC------CC----CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeec
Q psy12061        156 EYECVVKSTVGKIST-----KTTVIVEGP------PG----LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTN  220 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~-----~~~l~v~~~------P~----~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~  220 (626)
                      .|+|.+.|..|....     .+.|.+...      |.    .|..  ........+.|.|...             ..+.
T Consensus       172 ~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~--~~~~~G~~v~l~C~~~-------------g~p~  236 (382)
T 1cs6_A          172 NYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD--TYALTGQMVTLECFAF-------------GNPV  236 (382)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSE--EEEETTCCEEEECEEE-------------EESC
T ss_pred             eEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCc--eEEeCCCeEEEEEEEc-------------cCCC
Confidence            999999998864332     234554321      10    1111  1222344555555421             1111


Q ss_pred             CCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCC
Q psy12061        221 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK  300 (626)
Q Consensus       221 ~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~  300 (626)
                      ....|.+....+..   ........+.+.+ +...+.+.|+|.|.|..|........ .+...+... ..+....+..+ 
T Consensus       237 ~~i~W~~~~~~~~~---~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l-~V~~~p~~~-~~~~~~~~~~g-  309 (382)
T 1cs6_A          237 PQIKWRKLDGSQTS---KWLSSEPLLHIQN-VDFEDEGTYECEAENIKGRDTYQGRI-IIHAQPDWL-DVITDTEADIG-  309 (382)
T ss_dssp             CEEEEEECCSCCSC---CCSBSSSEEEECS-CCGGGCEEEEEEEEETTEEEEEEEEE-EEEEEEEEE-ECCCCEEEETT-
T ss_pred             CEEEEEECCccccc---EEecCCcEEEEcc-CChhhCEEEEEEEEcCCCeEEEEEEE-EEecCCCcc-cCCCccEEcCC-
Confidence            11233332222111   0012233556655 89999999999999998864322111 111111100 12223333332 


Q ss_pred             cCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCC
Q psy12061        301 IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE  377 (626)
Q Consensus       301 ~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~  377 (626)
                       ..+.|.....    +. +..  .+.|.+.+...........    ....+.+.++.......|+|.|.|..|....
T Consensus       310 -~~~~l~C~~~----g~-p~p--~v~W~~~g~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  374 (382)
T 1cs6_A          310 -SDLRWSCVAS----GK-PRP--AVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTVYA  374 (382)
T ss_dssp             -CCEEEECEEE----EE-SCC--EEEEEETTEECCCCSSEEE----ETTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             -CeEEEEEEee----ee-cCC--EEEEEECCEECCCCceEEE----ECCEEEECcCCcccCEEEEEEEEeCCCeEEE
Confidence             3455555441    11 111  4667666511100000010    1125778888888888899999999887543

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.94  E-value=9.8e-26  Score=204.30  Aligned_cols=194  Identities=25%  Similarity=0.365  Sum_probs=156.4

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      .|+.+|.++++...+.+++.|+|+++.       +.+.+|.|+|+..+.........  .....++.+.+|+|++.|.|+
T Consensus         4 ~p~~~P~~l~~~~~~~~si~l~W~~p~-------g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~   74 (234)
T 3f7q_A            4 MDLGAPQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLL--DSKVPSVELTNLYPYCDYEMK   74 (234)
T ss_dssp             -CCCCCEEEEEEECSSSCEEEEEECCS-------SCCCEEEEEEEETTSCGGGCEEE--EESSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCcceEEEEcCCCEEEEEEECCC-------CccceEEEEEEECCCCccceEEE--cCCccEEEECCCCCCCEEEEE
Confidence            456699999999999999999999972       56899999998776554333222  245566999999999999999


Q ss_pred             EEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc--cc-
Q psy12061        469 VMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA--ND-  545 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~--~~-  545 (626)
                      |+|+|..|.|++|..+.++|.+..|. +|.++++...+.+++.|+|+  +|...+|.|.+|.|+|+..+......  .. 
T Consensus        75 V~A~n~~G~g~~s~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~  151 (234)
T 3f7q_A           75 VCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWA--EPAETNGEITAYEVCYGLVNDDNRPIGPMKK  151 (234)
T ss_dssp             EEEEETTEECCCCCCEEEECCCCCCC-CCCCCEEEECSSSCEEEECC--CCSCCSSCCCEEEEEEEEBCTTSCBSSCCEE
T ss_pred             EEEEeCCCcCCCCCeEEEEcCCCCCC-CCCccEEEEecCCEEEEEEc--CCCCCCCceeEEEEEEEECCCCCCccCcceE
Confidence            99999999999999999999988886 57799999999999999999  56778899999999988765542211  11 


Q ss_pred             eeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       546 ~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      ........+.+.|.+|.|++.|.|+|+|+|..|.|++|++.+.+++.+.
T Consensus       152 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~  200 (234)
T 3f7q_A          152 VLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPK  200 (234)
T ss_dssp             CCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCC
T ss_pred             EEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCC
Confidence            1223345678999999999999999999999999999865555666543

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.94  E-value=8.2e-26  Score=212.26  Aligned_cols=281  Identities=11%  Similarity=0.064  Sum_probs=181.1

Q ss_pred             CCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEe-eccCCceE
Q psy12061        180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN-VLVPWSTY  258 (626)
Q Consensus       180 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~~~y  258 (626)
                      ..+|.++++... ..++.|+|+++.++..++. |.|+++..+...|........       .....+.+.. .|.++..|
T Consensus         4 l~~P~nv~~~~~-n~~~iL~W~pp~~~~~~v~-Y~V~y~~~~~~~W~~~~~c~~-------~~~~~c~lt~~~l~~~~~Y   74 (306)
T 3s98_A            4 LKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQN-------ITSTKCNFSSLKLNVYEEI   74 (306)
T ss_dssp             ----CCCEEEEE-TTEEEEECC--------CE-EEEEEEESSCSSCEECTTCSS-------BSSSEEECCC---CTTSCE
T ss_pred             CCCCcEeEEEEE-CCeEEEEEcCCCCCCCCeE-EEEEEEECCCCCcEECCCccC-------CCCCEEEccccccCCCCcE
Confidence            457899999755 5668899999876656665 999999988888987533221       1112222221 27899999


Q ss_pred             EEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCc-----ccCcceEEEEEEecCCC
Q psy12061        259 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ-----NAPNIYYKIFWRKKNDT  333 (626)
Q Consensus       259 ~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~-----~~~~~~y~i~~~~~~~~  333 (626)
                      .|||+|.| .|.+.++... .+.+....+..+|. +.+.... .+|.|.|+| +...+     ++.+.+|.|.|+..+..
T Consensus        75 ~~rV~A~n-~~~S~~s~~~-~f~~~~~~~~~pP~-v~~~~~~-~si~v~w~P-~~~~~~~~~~~g~~l~Y~v~y~~~~~~  149 (306)
T 3s98_A           75 KLRIRAEK-ENTSSWYEVD-SFTPFRKAQIGPPE-VHLEAED-KAIVIHISP-GTKDSVMWALDGLSFTYSLVIWKNSSG  149 (306)
T ss_dssp             EEEEEEEC-SSCEEEEECC-CBCHHHHCBCCCCE-EEEEECS-SCEEEEEEC-C---CCCC-----CCEEEEEEEETTTC
T ss_pred             EEEEEEEe-CCcCCCEeee-eEechhhCccCCCe-EEEEEcC-CEEEEEEEC-CCCCCcceeccCCcEEEEEEEEECCCC
Confidence            99999999 7766544332 33333333445664 6666544 689999995 33221     46789999999987743


Q ss_pred             c-ceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEec--CCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEE
Q psy12061        334 E-FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIN--DVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVT  410 (626)
Q Consensus       334 ~-~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n--~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~  410 (626)
                      . |. .  .    .....+.|.+|.|++.|.|+|+|.+  ..|.|.+|....+.|..+.|..+|.++.+... .+++.|+
T Consensus       150 ~~~~-~--~----~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~-~~s~~l~  221 (306)
T 3s98_A          150 VEER-I--E----NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ-NQNYVLK  221 (306)
T ss_dssp             CCEE-E--E----EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEE-TTEEEEE
T ss_pred             CeEE-E--e----cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEe-cCEEEEE
Confidence            3 33 1  1    1234678999999999999999999  67899999999999988888889999998765 5789999


Q ss_pred             eeeccccccccceeeEEEEEEEEe--------cCCCccceEEEEecCccceEEEeCC-ccCceEEEEEEEeeCCCCCCCC
Q psy12061        411 WNPIELIRENIRGRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNWALIVGL-QPDTKYYVKVMAYNNAGEGPES  481 (626)
Q Consensus       411 W~~~~~~~~~~~~~i~~Y~v~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~v~V~a~~~~g~s~~s  481 (626)
                      |+++....        +|.+.+..        .+...+.............+.+.++ .+...|.|||+|.|..|.|.+|
T Consensus       222 W~~p~~~~--------~~~v~~~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~~~s~~s  293 (306)
T 3s98_A          222 WDYTYANM--------TFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS  293 (306)
T ss_dssp             EECSSSSC--------EEEEEEEEGGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEEEEEECSSCBCCCC
T ss_pred             eCCCCCcE--------EEEEEEehhhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEEEEEccCCCccccc
Confidence            99875321        44444432        1122221100011233455778874 4656999999999999999999


Q ss_pred             ccEEEeecC
Q psy12061        482 ERYLERTYR  490 (626)
Q Consensus       482 ~~~~~~t~~  490 (626)
                      ....|.|..
T Consensus       294 ~~~~~~~~~  302 (306)
T 3s98_A          294 EEIKFDTEI  302 (306)
T ss_dssp             CCEEEEC--
T ss_pred             cccccCccc
Confidence            999988763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=211.37  Aligned_cols=170  Identities=24%  Similarity=0.444  Sum_probs=131.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc--cCC---cEEEccCCC-CCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG---NLLISPVSR-DDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~--~~g---~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+... ++.+.  .+|   +|.|.+++. +|+|.|+|.|.|..|.....+.|
T Consensus        18 v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   96 (304)
T 2yd9_A           18 GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKL   96 (304)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEE
T ss_pred             ecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEE
Confidence            568999999999999999999999999998643 44443  333   599999998 99999999999999998888999


Q ss_pred             EEEeCC------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee-EecCCeEEEee
Q psy12061         76 IVLHGP------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI-NIDGGLLEITN  148 (626)
Q Consensus        76 ~v~~~p------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~  148 (626)
                      .|...+      +.+...|....+..|++++|.|.+.+.|.|  .+.|++++..+.....    ..++ ...++.|.|.+
T Consensus        97 ~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~k~~~~~~~~~~----~~~~~~~~~~~L~i~~  170 (304)
T 2yd9_A           97 TVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSAS----NGRIKQLRSGALQIES  170 (304)
T ss_dssp             EEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCC--EEEEEETTEECCGGGG----TTSEEECTTSCEEECS
T ss_pred             EEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCC--eEEEEECCEECcCCCC----cceEEeCCCeEEEEcc
Confidence            998752      233345677889999999999999999876  5699999999875421    1222 34567999999


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEE-EEEEEeC
Q psy12061        149 ASFADAGEYECVVKSTVGKISTK-TTVIVEG  178 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~-~~l~v~~  178 (626)
                      ++.+|+|.|+|.|.|..|..... +.|.|..
T Consensus       171 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~  201 (304)
T 2yd9_A          171 SEETDQGKYECVATNSAGVRYSSPANLYVRV  201 (304)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCcccCEEEEEEEEeCCCCEEeccEEEEEEe
Confidence            99999999999999999976543 5666654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.94  E-value=9.8e-26  Score=223.67  Aligned_cols=248  Identities=22%  Similarity=0.356  Sum_probs=179.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc---CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~---~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+.   ...+..+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.+.|
T Consensus       133 ~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v  212 (403)
T 3laf_A          133 AFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI  212 (403)
T ss_dssp             EETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEE
T ss_pred             EEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEE
Confidence            4689999999999999999999999999884   45677777788999999999999999999999888744 5678888


Q ss_pred             EeCCce-----eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC
Q psy12061         78 LHGPSY-----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA  152 (626)
Q Consensus        78 ~~~p~~-----~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  152 (626)
                      ...|..     +...+....+.+|++++|.|.+.+.|.|  .+.|++++..+....     .......++.|.|.+++.+
T Consensus       213 ~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~-----~~~~~~~~~~L~i~~~~~~  285 (403)
T 3laf_A          213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP--SFTWLRGEEVIQLRS-----KKYSLLGGSNLLISNVTDD  285 (403)
T ss_dssp             ECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCC--EEEEEETTEECCCSS-----SSEEEETTTEEEECSCCGG
T ss_pred             ecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCC--eEEEEECCeeccCCC-----ceEEECCccEEEEeCCCHH
Confidence            776642     3345777889999999999999998876  569999999886542     1223346678999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCCCC---CCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEee
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGPPG---LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS  229 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~  229 (626)
                      |+|.|+|.|.|..|..+..+.|.|..+|.   .|.+..  ......+.|.|...             ..+.....|.+.+
T Consensus       286 d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~--~~~g~~v~l~C~~~-------------g~p~p~v~W~~~g  350 (403)
T 3laf_A          286 DSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY--AYESMDIEFECAVS-------------GKPVPTVNWMKNG  350 (403)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE--CCTTCCEEECCEEE-------------EESCCEEEEEETT
T ss_pred             HCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceE--EecCCeEEEEEEEe-------------eccCCEEEEEECC
Confidence            99999999999999999999999987663   222221  12233444444421             1111112233322


Q ss_pred             cceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                      ..+.............+.+.. +...+.+.|+|.|.|..|...
T Consensus       351 ~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~  392 (403)
T 3laf_A          351 DVVIPSDYFQIVGGSNLRILG-VVKSDEGFYQCVAENEAGNAQ  392 (403)
T ss_dssp             EECCCSSSEEEETTTEEEESS-CCGGGCEEEEEEEEETTEEEE
T ss_pred             EECCCCCcEEEecCccEEEec-cccccCEEEEEEEEcCCceEE
Confidence            221111100111223456655 889999999999999998653

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.94  E-value=2.8e-25  Score=228.09  Aligned_cols=256  Identities=13%  Similarity=0.083  Sum_probs=176.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCE-EEEEEEEcCCCCcee-eEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHGMDES-KGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~-~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.+.|.|+| ||..+..+.++.+..++.|.|.+++.+|+| .|+|.|.|..|...+ .+.|.|.
T Consensus       126 v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  205 (524)
T 2ec8_A          126 GKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR  205 (524)
T ss_dssp             EETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEE
T ss_pred             EEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEE
Confidence            5689999999999997778999988 899998888888888889999999999999 999999998777644 7888887


Q ss_pred             ---eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEe--ccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         79 ---HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI--GNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        79 ---~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                         ..|+.+...+....+.+|++++|.|.+.+.|.|. ++.|++++..+  .................+.|.|.+++.+|
T Consensus       206 ~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D  284 (524)
T 2ec8_A          206 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND  284 (524)
T ss_dssp             CCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTC-EEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTT
T ss_pred             eCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcE-EEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHH
Confidence               2334444457778999999999999999988764 47999999883  22210000001112345789999999999


Q ss_pred             CEeEEEEEEeCCCceEEEEEEEEeCCCCCCCc----eEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEee
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGG----VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS  229 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~----~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~  229 (626)
                      +|.|+|.|.|..|..+..+.|.|..+|.....    ..........+.|.|..... ..+.   .+.        |.+.+
T Consensus       285 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~-P~p~---~v~--------W~k~g  352 (524)
T 2ec8_A          285 SGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAF-PKPE---HQQ--------WIYMN  352 (524)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEE-SCCC---EEE--------EESSS
T ss_pred             CEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeec-CCCc---EEE--------EEECC
Confidence            99999999999999999999999887643211    11222334456666653110 1111   122        22222


Q ss_pred             cceeeee--eec------cCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        230 EHVIGKE--VDR------YTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       230 ~~~~~~~--~~~------~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ..+....  ...      +.....+.+.+ +...+.+.|+|.|.|..|..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~  401 (524)
T 2ec8_A          353 RTFTDKWEDYPKSENESNIRYVSELHLTR-LKGTEGGTYTFLVSNSDVNA  401 (524)
T ss_dssp             CBCSSSBCCEESCCSSSCCEEEEEEEECS-CCGGGCEEEEEEEECSSCEE
T ss_pred             eeccCCccceeEEccCCCceeEEEEEEee-cCcccCeEEEEEEEecCceE
Confidence            2111100  000      00123455655 89999999999999999864

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.93  E-value=5.2e-26  Score=218.23  Aligned_cols=258  Identities=17%  Similarity=0.105  Sum_probs=167.2

Q ss_pred             CCCCCceEEEEeeeCCC---------CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCE-EEEEEEEcCCCCce
Q psy12061          1 YAGEGGNVTIFCNPEAA---------PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHGMDE   70 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~---------p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g~~~   70 (626)
                      +|.+|++++|.|.+.+.         |.+.|.|+|++..+....++  ..+++|.|.+++.+|+| .|+|.|.|..|...
T Consensus        40 ~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~  117 (329)
T 3oq3_B           40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCV  117 (329)
T ss_dssp             EECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTSCEE
T ss_pred             EEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCCcee
Confidence            36899999999999884         56799999999887654444  45789999999999999 99999999998755


Q ss_pred             eeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccC-CcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec
Q psy12061         71 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA  149 (626)
Q Consensus        71 ~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  149 (626)
                      ....+.|...|+....++....+.+|++++|.|.+.+.| .|  .+.|+|++..+....      .++...++.|.|.++
T Consensus       118 ~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~--~i~W~k~~~~l~~~~------~~~~~~~~~L~I~~v  189 (329)
T 3oq3_B          118 QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN--NITWYKNNQELIIDG------TKYSQSGQNLIIHNP  189 (329)
T ss_dssp             EEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCC--EEEEEETTEECCCSS------SSEEEETTEEEECSC
T ss_pred             eEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCc--eEEEEECCccCCCCC------ceEecCCCEEEEeec
Confidence            555445555443333333334467899999999999988 55  569999999985432      455555799999999


Q ss_pred             CCCCCEeEEEEEEeC--CCceEE----EEEEEEeCCCCCCC----ceEEEEEeccceEEEEecCCCCCCcccEEEEEEee
Q psy12061        150 SFADAGEYECVVKST--VGKIST----KTTVIVEGPPGLPG----GVQVVEVHKTSATIQWTDGATNGRPITHYKIIART  219 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~--~g~~~~----~~~l~v~~~P~~p~----~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~  219 (626)
                      +.+|+|.|+|.|.|.  .|....    .+.|.|..+|....    ...........+.|.|........+. ...+.|..
T Consensus       190 ~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~-~i~v~W~~  268 (329)
T 3oq3_B          190 ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVD-DVLIDWEN  268 (329)
T ss_dssp             CGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTT-CCEEEEEC
T ss_pred             ChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCC-CcEEEEEE
Confidence            999999999999997  654433    37788887763211    01122223445566665322110000 01233332


Q ss_pred             cCCCCceEeecceeeeeeecc-CCceeEEEEeeccCCceE-EEEEEEecCCccC
Q psy12061        220 NWNSTWFNVSEHVIGKEVDRY-TGRKEASIENVLVPWSTY-EFKVIAGNELGYG  271 (626)
Q Consensus       220 ~~~~~w~~~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~y-~~~v~a~n~~g~~  271 (626)
                      .+..-. .............. .....+.|.+ +...+.+ .|+|.|.|..|..
T Consensus       269 ~g~~i~-~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~~Y~C~a~N~~G~~  320 (329)
T 3oq3_B          269 PSGWII-GLDFGVYSILTSSGGITEATLYFEN-VTEEYIGNTYTCRGHNYYFDK  320 (329)
T ss_dssp             TTSCBC-CBCSSEEEEEEEETTEEEEEEEESS-CCGGGTTCEEEEEEECSSCEE
T ss_pred             CCeeee-ccCCceeeeecccCceeEeEEEEEe-ccHHHCCCcEEEEEEecCCce
Confidence            221100 00000000000000 0123455544 8889999 9999999998854

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=1.7e-25  Score=196.83  Aligned_cols=170  Identities=30%  Similarity=0.422  Sum_probs=142.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+.. +.++.+..++ +|.|.+++.+|+|.|+|.+.|..|. ....+.|.|.
T Consensus        19 ~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   98 (192)
T 2iep_A           19 ALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK   98 (192)
T ss_dssp             EETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             eeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE
Confidence            56899999999999999999999999999875 5677776665 5999999999999999999999888 4556788888


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .+|.+.. ++....+..|++++|.|.+.+.|.+  .+.|++++..+....      ......++.|.|.++..+|+|.|+
T Consensus        99 ~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~  169 (192)
T 2iep_A           99 MKPKITR-PPINVKIIEGLKAVLPCTTMGNPKP--SVSWIKGDSALRENS------RIAVLESGSLRIHNVQKEDAGQYR  169 (192)
T ss_dssp             EEEEEEE-CCCCEEEETTSCEEECCEEEEESCC--EEEEEETTEECCCCS------SEEECTTSCEEESSCCGGGCEEEE
T ss_pred             eCCcccc-CCcceEEeCCCcEEEEEEEeccCCc--eEEEEeCCEEccCCC------cEEEecCCcEEEecCChhhCEEEE
Confidence            8777655 5678899999999999999999876  569999999987542      222335678999999999999999


Q ss_pred             EEEEeCCCce-EEEEEEEEeCCC
Q psy12061        159 CVVKSTVGKI-STKTTVIVEGPP  180 (626)
Q Consensus       159 C~a~n~~g~~-~~~~~l~v~~~P  180 (626)
                      |.|.|..|.. +..+.|.|..+|
T Consensus       170 C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          170 CVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEcCCCcEEEEEEEEEEEeCC
Confidence            9999999987 557888888765

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.93  E-value=5.8e-25  Score=207.49  Aligned_cols=248  Identities=19%  Similarity=0.272  Sum_probs=175.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|. .|.|+| +|..+..+.++.+..+|   +|.|.+++.+|+|.|+|.|.|..|... ....|.
T Consensus        16 v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~   94 (291)
T 2wim_A           16 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE   94 (291)
T ss_dssp             EETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEE
Confidence            568999999999999875 999999 88888888888887766   799999999999999999999988763 456788


Q ss_pred             EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCE
Q psy12061         77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAG  155 (626)
Q Consensus        77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g  155 (626)
                      |..+|.+.. .+....+.+|++++|.|.+.+.|.+  .+.|++++..+....     ..++. ..++.|.|.+++..|+|
T Consensus        95 v~~~~~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G  166 (291)
T 2wim_A           95 IYQKLTFRE-VVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTIS-----DNRFAMLANNNLQILNINKSDEG  166 (291)
T ss_dssp             EECCCBCCS-CCCSEEEETTSCEEECCCCBCSSCC--EEEEECC----CBCC-----CSSEEECTTSCEEETTCCGGGCE
T ss_pred             ecCCcceEe-CCCChhhcCCCCEEEEEEEccCCCC--EEEEEECCccccccC-----CceEEEccCCCEEEEecchhhCE
Confidence            877776554 4667889999999999999998876  469999998876421     13333 35678999999999999


Q ss_pred             eEEEEEEeCCCce--EEEEEEEEeCCCCCCCce---EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeec
Q psy12061        156 EYECVVKSTVGKI--STKTTVIVEGPPGLPGGV---QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSE  230 (626)
Q Consensus       156 ~Y~C~a~n~~g~~--~~~~~l~v~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~  230 (626)
                      .|+|.+.|..+..  ...+.+.+..+|......   .........+.|.|...   +.+...  +.|..++        .
T Consensus       167 ~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~---g~p~p~--v~W~~~g--------~  233 (291)
T 2wim_A          167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS---GSPEPA--ISWFRNG--------K  233 (291)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCC---CBSCCE--EEEEETT--------E
T ss_pred             EEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEee---cCCCCe--EEEEECC--------E
Confidence            9999999987543  456677777777543211   12223456677887753   222222  2332222        1


Q ss_pred             ceeeee-eeccCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        231 HVIGKE-VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       231 ~~~~~~-~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                      .+.... .........+.+.+ +...+.+.|+|.|.|..|...
T Consensus       234 ~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~N~~G~~~  275 (291)
T 2wim_A          234 LIEENEKYILKGSNTELTVRN-IINSDGGPYVCRATNKAGEDE  275 (291)
T ss_dssp             ECCCTTTEEECSTTCEEEEES-CCSTTCEEEEEEEEETTEEEE
T ss_pred             ECcCCccEEEcCCccEEEEee-CCcccCEEEEEEEEECCCcee
Confidence            111000 00011233566766 999999999999999999664

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.93  E-value=6.6e-25  Score=207.13  Aligned_cols=249  Identities=20%  Similarity=0.283  Sum_probs=169.3

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEe-CCEEccC-CCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCCC-ceeeE
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKK-DGNIIGS-GGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGM-DESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~-~~~~i~~-~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~   73 (626)
                      +.+|++++|.|.+.|.| .+.|.|+| ||..+.. ..++.+..    +++|.|.+++.+|+|.|+|.|.|..|. ....+
T Consensus        14 v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~   93 (291)
T 1qz1_A           14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV   93 (291)
T ss_dssp             EETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEE
T ss_pred             EeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEE
Confidence            56899999999999987 68999999 8888864 45666543    347999999999999999999999865 44567


Q ss_pred             EEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         74 RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        74 ~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                      .|.|..+|.+.. .|....+.+|++++|.|.+.+.|.|  .+.|++++..+....    ........++.|.|.+++.+|
T Consensus        94 ~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d  166 (291)
T 1qz1_A           94 NVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDVILKK----DVRFIVLSNNYLQIRGIKKTD  166 (291)
T ss_dssp             EEEEECCSEEEE-CCSSEEEETTSCEEECCEEECSSCC--EEEEEETTSCSSTTC----CTTEEECTTSCEEETTCCGGG
T ss_pred             EEEeeccccccC-CCCcccccCCCeEEEEEEeccCCCC--EEEEEECCEEcccCC----CceEEEccCCcEEEccCcccc
Confidence            888877766554 5778889999999999999999876  569999998875431    012223466799999999999


Q ss_pred             CEeEEEEEEeCCCce--EEEEEEEEeCCCCCCC---ceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEe
Q psy12061        154 AGEYECVVKSTVGKI--STKTTVIVEGPPGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV  228 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~--~~~~~l~v~~~P~~p~---~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~  228 (626)
                      +|.|+|.|.|..+..  ...+.|.|..+|....   ...........+.|.|....   .+.          ....|.+.
T Consensus       167 ~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g---~p~----------p~i~W~~~  233 (291)
T 1qz1_A          167 EGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADG---FPE----------PTMSWTKD  233 (291)
T ss_dssp             CEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEE---ESC----------CEEEEEET
T ss_pred             CeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEE---eCC----------CcEEEEEC
Confidence            999999999976433  4556677765553211   11111223344555554211   111          11122222


Q ss_pred             ecceeeee-----eeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        229 SEHVIGKE-----VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       229 ~~~~~~~~-----~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      +..+....     .........+.+.+ +...+.+.|+|.|.|..|..
T Consensus       234 g~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~  280 (291)
T 1qz1_A          234 GEPIENEEEDDEKHIFSDDSSELTIRN-VDKNDEAEYVCIAENKAGEQ  280 (291)
T ss_dssp             TEECCCC--CCSSEEECTTSCEEEECS-CCGGGCEEEEEEEEETTEEE
T ss_pred             CEECcCCCCCCcceEEcCCCcEEEEEe-cChhcCEEEEEEEEeCCCce
Confidence            22111100     00001223466655 89999999999999999854

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.93  E-value=1.4e-25  Score=220.23  Aligned_cols=165  Identities=30%  Similarity=0.541  Sum_probs=143.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|.|.|.+.|+| ++.++... ......+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       217 ~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~  295 (384)
T 3kld_A          217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARK-ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ  295 (384)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT-CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             ecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc-ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC
Confidence            4579999999999999999999999 55566443 333445678999999999999999999999999999999999888


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.+.. .+.+..+..|+++.|.|.+.|.|.|.  |.|+|||..+...       .++...++.|.|.+++.+|+|.|+|.
T Consensus       296 P~~~~-~~~~~~v~~g~~v~l~C~~~g~P~p~--i~W~k~g~~l~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~  365 (384)
T 3kld_A          296 PNWVQ-IINDIHVAMEESVFWECKANGRPKPT--YRWLKNGDPLLTR-------DRIQIEQGTLNITIVNLSDAGMYQCV  365 (384)
T ss_dssp             EEEEE-CCCCEEECTTCCEEEECEEEEESCCE--EEEEETTEECCCB-------TTEEEETTEEEESSCCGGGCEEEEEE
T ss_pred             Ccccc-CCCceEecCCCCEEEEeECCccCCCe--EEEEECCEECCCC-------ccEEEeCCEEEEeecChhhCEEEEEE
Confidence            87765 46788999999999999999999874  5899999998653       45667788999999999999999999


Q ss_pred             EEeCCCceEEEEEEEEe
Q psy12061        161 VKSTVGKISTKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~  177 (626)
                      |.|..|...+++.|.|.
T Consensus       366 A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          366 AENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             EEeCCceEEeceEEEEe
Confidence            99999999999999885

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.93  E-value=7.8e-25  Score=215.90  Aligned_cols=342  Identities=16%  Similarity=0.203  Sum_probs=209.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe-CCEEccCC-CcEEEccCCcEEEccCCCCC------CEEEEEEEEcCCCCc-eee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSG-GRRKIFENGNLLISPVSRDD------SGIYSCTATNVHGMD-ESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~i~~~-~~~~~~~~g~L~i~~v~~~d------~G~Y~C~a~n~~g~~-~~~   72 (626)
                      +.+|+.++|.|.+.|.|.|+|.|+| ||.++... ....+..+|+|.|.+++.+|      +|.|+|.|.|..|.. ...
T Consensus        16 ~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~   95 (388)
T 2v5m_A           16 FSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD   95 (388)
T ss_dssp             EETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCC
T ss_pred             EEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecc
Confidence            4589999999999999999999999 88888643 33355678899999999987      999999999999874 346


Q ss_pred             EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCC-cceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC
Q psy12061         73 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF  151 (626)
Q Consensus        73 ~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  151 (626)
                      +.|.|..+|.+.. .+....+.+|++++|.|.+.+.+. +...+.|++++..+...... .........++.|.|.+++.
T Consensus        96 ~~v~v~~~p~~~~-~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~  173 (388)
T 2v5m_A           96 VHVRAVVAQYYEA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE-YDGKYLVLPSGELHIREVGP  173 (388)
T ss_dssp             EEEEEECCCCCCC-BCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSC-BTTTEEECTTSCEEESSCCG
T ss_pred             eEEEEcccccccc-CccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccC-CCCcEEEccCCcEEEecCCc
Confidence            7888877776655 466788999999999999988754 33578999998877532210 11122234567999999999


Q ss_pred             CCC-EeEEEEEEeCCCceE-EE---EEEEEeCC-----CCCCC---ceEEEEEeccceEEEEecCCCCCCcccEEEEEEe
Q psy12061        152 ADA-GEYECVVKSTVGKIS-TK---TTVIVEGP-----PGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR  218 (626)
Q Consensus       152 ~d~-g~Y~C~a~n~~g~~~-~~---~~l~v~~~-----P~~p~---~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~  218 (626)
                      +|+ |.|+|.+.|..+... ..   ..|.|..+     |..|.   ... .......+.|.|...   +.+...  +.|.
T Consensus       174 ~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~-~v~~G~~v~l~C~~~---g~p~p~--v~W~  247 (388)
T 2v5m_A          174 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL-ELMVAHTISLLCPAQ---GFPAPS--FRWY  247 (388)
T ss_dssp             GGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE-EEETTSCEEECCCCE---EESCCE--EEEE
T ss_pred             cccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce-EEeeCCcEEEEEECC---CCCCCE--EEEE
Confidence            999 999999999865432 21   35666654     21111   111 122345666666532   111111  2222


Q ss_pred             ecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeec
Q psy12061        219 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG  298 (626)
Q Consensus       219 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~  298 (626)
                      ..+...-....... .....  .....+.+.+ +...+.+.|+|.|.|..|........ .+..++. ....|....+..
T Consensus       248 ~~~~~~~~~~~~~~-~~~~~--~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l-~V~~~p~-~~~~~~~~~v~~  321 (388)
T 2v5m_A          248 KFIEGTTRKQAVVL-NDRVK--QVSGTLIIKD-AVVEDSGKYLCVVNNSVGGESVETVL-TVTAPLS-AKIDPPTQTVDF  321 (388)
T ss_dssp             EECTTSSCEEECCC-SSSEE--EETTEEEESS-CCGGGCEEEEEEEECSSCEEEEEEEE-EEEEEEE-EEEESSEEEECT
T ss_pred             ecCCCCcccccccc-cCcee--cccCEEEECc-CCHHHCeEEEEEEecCCCceeEEEEE-EEeCCCc-cccCCCcEEecC
Confidence            21110000000000 00000  0112455555 89999999999999999864222111 1111110 011223333333


Q ss_pred             CCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       299 ~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                      +  ..+.|.....    +.. ..  .+.|.+.+..      +.    .....+.|.++.......|+|.|.|..|...
T Consensus       322 g--~~~~l~C~~~----g~p-~p--~i~W~~~g~~------i~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  380 (388)
T 2v5m_A          322 G--RPAVFTCQYT----GNP-IK--TVSWMKDGKA------IG----HSESVLRIESVKKEDKGMYQCFVRNDRESAE  380 (388)
T ss_dssp             T--SCEEEEEEEE----EEC-CC--EEEEEETTEE------CS----CCSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             C--CCEEEEEEec----ccc-CC--eEEEEECCEE------Cc----cCCCEEEEecCChhhCEEEEEEEEcCCCcEE
Confidence            3  4556655541    111 11  5677766511      00    0123577888888888889999999988654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.93  E-value=5.9e-25  Score=216.88  Aligned_cols=241  Identities=10%  Similarity=0.026  Sum_probs=146.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC--CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~--g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      |.+|++++|.|.+.|.|.|.|.|++++..+....+......  .+|.|.+|+.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        60 V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  139 (423)
T 3qs7_E           60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN  139 (423)
T ss_dssp             ECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-
T ss_pred             EecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec
Confidence            57999999999999999999999999988754222111111  2599999999999999999999999888888998876


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      +|.+...  ....+..|+.++|.|.+.|.|.|.  |.|+|++..+.....  .....+......|     ...|+|.|+|
T Consensus       140 ~p~~~~~--~p~~~~~~~~~~L~C~a~G~P~P~--i~W~k~~~~~~~~~~--~~~~~~~~~~~~l-----~~~d~G~Y~C  208 (423)
T 3qs7_E          140 TLLYTLR--RPYFRKMENQDALVCISESVPEPI--VEWVLCDSQGESCKE--ESPAVVKKEEKVL-----HELFGTDIRC  208 (423)
T ss_dssp             ----CEE--EEEEEECSSSSCEEEEEEESSCCE--EEEEEC---------------CEEECCSEE-----CCCCSSCEEE
T ss_pred             Ccccccc--CCcEeccCCceEEEEEEeeecCCe--EEEEECCCCCccccc--cccccccccceEE-----ecccCeEEEE
Confidence            6654322  223456788999999999999885  589999876532110  0001111112222     5789999999


Q ss_pred             EEEeCCCceEE-EEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee---
Q psy12061        160 VVKSTVGKIST-KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK---  235 (626)
Q Consensus       160 ~a~n~~g~~~~-~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~---  235 (626)
                      .|.|..|.... .+.|.|..+|..|.. .........+.|.|........+    .|.        |.+.+..+...   
T Consensus       209 ~A~N~~G~~~~~~~~l~V~~~p~~~~~-~~~v~~G~~v~L~C~~~g~~p~p----~i~--------W~k~g~~l~~~~~~  275 (423)
T 3qs7_E          209 CARNELGRECTRLFTIDLNQTPQTTLP-QLFLKVGEPLWIRCKAVHVNHGF----GLT--------WELENKALEEGNYF  275 (423)
T ss_dssp             EEECSSCEEEEECEEEESSSCCCSSTT-EEEEETTSCEEEEEEEEESSSCC----CEE--------EEESSSBCCGGGEE
T ss_pred             EEEcCCCCcceeeEEEEEecCCccCCC-ceEEeCCCeEEEEEEEEcCCCCc----EEE--------EEECCEEcccccee
Confidence            99999998654 367777766654322 22234455666666642111111    122        22222111000   


Q ss_pred             eeec------cCCceeEEEEeeccCCceEEEEEEEecC
Q psy12061        236 EVDR------YTGRKEASIENVLVPWSTYEFKVIAGNE  267 (626)
Q Consensus       236 ~~~~------~~~~~~~~i~~~l~~~~~y~~~v~a~n~  267 (626)
                      ....      ......+.|.+ +...+.+.|+|.|.|.
T Consensus       276 ~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          276 EMSTYSTNRTMIRILFAFVSS-VARNDTGYYTCSSSKH  312 (423)
T ss_dssp             EEEEEETTTEEEEEEEEEESS-CCTTTCEEEEEEETTE
T ss_pred             ecccccCCceeEEEEEEEEee-cCHHHCEEEEEEEecC
Confidence            0000      01112355555 8999999999999998

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.93  E-value=6.2e-25  Score=199.04  Aligned_cols=222  Identities=21%  Similarity=0.293  Sum_probs=163.2

Q ss_pred             CCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEE
Q psy12061        286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK  365 (626)
Q Consensus       286 ~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~  365 (626)
                      .|+.+|.++.+...+.+++.|+|+++     ++.+.+|.|+|+..+...+......    .....+.+.+|.|++.|.|+
T Consensus         4 ~p~~~P~~l~~~~~~~~si~l~W~~p-----~g~i~~Y~v~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~~   74 (234)
T 3f7q_A            4 MDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLD----SKVPSVELTNLYPYCDYEMK   74 (234)
T ss_dssp             -CCCCCEEEEEEECSSSCEEEEEECC-----SSCCCEEEEEEEETTSCGGGCEEEE----ESSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCcceEEEEcCCCEEEEEEECC-----CCccceEEEEEEECCCCccceEEEc----CCccEEEECCCCCCCEEEEE
Confidence            35678999999999999999999983     3578999999998764443322222    23456889999999999999


Q ss_pred             EEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc----
Q psy12061        366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET----  441 (626)
Q Consensus       366 v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~----  441 (626)
                      |+|.|..|.|.+|....++|.+..|. +|.++++...+.+++.|+|++|...    +|.+.+|.|+|+..+.....    
T Consensus        75 V~A~n~~G~g~~s~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~  149 (234)
T 3f7q_A           75 VCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEPAET----NGEITAYEVCYGLVNDDNRPIGPM  149 (234)
T ss_dssp             EEEEETTEECCCCCCEEEECCCCCCC-CCCCCEEEECSSSCEEEECCCCSCC----SSCCCEEEEEEEEBCTTSCBSSCC
T ss_pred             EEEEeCCCcCCCCCeEEEEcCCCCCC-CCCccEEEEecCCEEEEEEcCCCCC----CCceeEEEEEEEECCCCCCccCcc
Confidence            99999999999999999999988887 6889999999999999999988643    37799999999877654321    


Q ss_pred             eEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCc-cEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCC
Q psy12061        442 AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE-RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS  520 (626)
Q Consensus       442 ~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~-~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~  520 (626)
                      ............+.+.+|+|++.|.|+|+|.|..|.|++|. .+.++|.+..|+.+|....+.       .+.      .
T Consensus       150 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P~~~P~~~~~~-------i~~------~  216 (234)
T 3f7q_A          150 KKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIP-------IVD------A  216 (234)
T ss_dssp             EECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCCCCCCCCTTCC-------EEE------T
T ss_pred             eEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCCCCCcccccee-------eEE------c
Confidence            11112233446799999999999999999999999999987 478899888887766433222       111      1


Q ss_pred             CCCCceeeEEEEEE
Q psy12061        521 FEEEPIIGYKVRVW  534 (626)
Q Consensus       521 ~~~~~i~~Y~i~~~  534 (626)
                      ..+..+++|.++++
T Consensus       217 ~~g~~~~~~~~~~~  230 (234)
T 3f7q_A          217 QSGEDYDSFLMYSD  230 (234)
T ss_dssp             TC------------
T ss_pred             ccCcchheeeeehh
Confidence            24567778888643

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.93  E-value=1.2e-25  Score=200.69  Aligned_cols=179  Identities=20%  Similarity=0.207  Sum_probs=133.0

Q ss_pred             CCCC--ceEEEEeeeCCCCCCeeEEEe---CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEE
Q psy12061          2 AGEG--GNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRL   75 (626)
Q Consensus         2 ~~~G--~~~~l~C~~~g~p~p~i~W~~---~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l   75 (626)
                      +.+|  ++++|.|.+.+ |.+.+.|+|   ||..+..+.++....++.|.|.+++.+|+|.|+|.|.|..+...+. ..|
T Consensus        19 v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l   97 (213)
T 2x1w_L           19 ITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV   97 (213)
T ss_dssp             ECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEE
T ss_pred             EecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEE
Confidence            5789  99999999987 789999988   4777776666666666789999999999999999999965543333 566


Q ss_pred             EEEe--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC-C-ccCCCe---eEecCCeEEEee
Q psy12061         76 IVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-N-ELETPN---INIDGGLLEITN  148 (626)
Q Consensus        76 ~v~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-~-~~~~~~---~~~~~~~l~i~~  148 (626)
                      .|..  +|.+...++..+.+.+|++++|.|.+.+.|.+.+++.|+++|..+..... . .....+   .....+.|.|.+
T Consensus        98 ~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~  177 (213)
T 2x1w_L           98 VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG  177 (213)
T ss_dssp             EECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESS
T ss_pred             EEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECC
Confidence            6643  34455556666799999999999999997766667899999886432110 0 000000   012345799999


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        149 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      ++.+|+|.|+|.|.|..|..+..+.|.|..+|.
T Consensus       178 v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          178 VTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             CCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            999999999999999999999999999988763

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.93  E-value=2.9e-25  Score=220.37  Aligned_cols=342  Identities=16%  Similarity=0.208  Sum_probs=211.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC--CCcEEEc-cCCcEEEc----cCCCCCCEEEEEEEEcCCCCce-eeE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLIS----PVSRDDSGIYSCTATNVHGMDE-SKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~--~~~~~~~-~~g~L~i~----~v~~~d~G~Y~C~a~n~~g~~~-~~~   73 (626)
                      +.+|++++|.|.+.|.|.|+|.|+|||..+..  +.++.+. .+++|.|.    +++.+|+|.|+|.|.|..|... ..+
T Consensus        29 v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~  108 (404)
T 3p3y_A           29 VDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRI  108 (404)
T ss_dssp             ECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEE
T ss_pred             EcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeE
Confidence            56899999999999999999999999998853  3344333 45677775    8889999999999999998864 567


Q ss_pred             EEEEEeCCceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCC
Q psy12061         74 RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASF  151 (626)
Q Consensus        74 ~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~  151 (626)
                      .|.|..+|.+....+....+.+|++++|.|.+ .+.|.+  .+.|++++.......      .+.. ..++.|.|.+++.
T Consensus       109 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~~~~~~~~~------~~~~~~~~~~l~i~~v~~  180 (404)
T 3p3y_A          109 RLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP--VIFWMSSSMEPITQD------KRVSQGHNGDLYFSNVML  180 (404)
T ss_dssp             EEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCC--EEEEECTTSCBCCCC------SSEEECTTSCEEESSCCS
T ss_pred             EEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCC--eEEEeCCCccccCCC------CcEEEcCCCcEEEEeeee
Confidence            88888888776666677899999999999999 667665  569999875443321      2333 3577899999999


Q ss_pred             CC-CEeEEEEEEeCCCceEE---EEEEEEeCCCC----CCC------c-eEEEEEeccceEEEEecCCCCCCcccEEEEE
Q psy12061        152 AD-AGEYECVVKSTVGKIST---KTTVIVEGPPG----LPG------G-VQVVEVHKTSATIQWTDGATNGRPITHYKII  216 (626)
Q Consensus       152 ~d-~g~Y~C~a~n~~g~~~~---~~~l~v~~~P~----~p~------~-~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~  216 (626)
                      .| +|.|+|.+.|..|....   ...+.+...+.    +|.      . -.........+.|.|...   +.+..  .+.
T Consensus       181 ~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~---g~p~~--~v~  255 (404)
T 3p3y_A          181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS---GVPTP--DIA  255 (404)
T ss_dssp             GGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC---CSSCC--EEE
T ss_pred             ccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC---CCCCC--cEE
Confidence            99 59999999998886432   34555543221    111      1 122334556788888643   22222  233


Q ss_pred             EeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEe
Q psy12061        217 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG  296 (626)
Q Consensus       217 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~  296 (626)
                      |...+        ..+.............+.+.+ +...+.+.|+|.|.|..|........ .+...+.. ...|.+..+
T Consensus       256 W~~~~--------~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l-~V~~~p~~-~~~~~~~~v  324 (404)
T 3p3y_A          256 WYKKG--------GDLPSDKAKFENFNKALRITN-VSEEDSGEYFCLASNKMGSIRHTISV-RVKAAPYW-LDEPKNLIL  324 (404)
T ss_dssp             EEETT--------BCCCTTTEEEEGGGTEEEESS-CCGGGCEEEEEEEECSSCEEEEEEEE-EEEEEEEE-EECCCCEEE
T ss_pred             EEECC--------EECCCCcccccccCceEEEcc-CCHhHCEEEEEEEEeCCCcEEEEEEE-EEeCCCee-eccCCccee
Confidence            33322        211110000001123456655 89999999999999998854322111 11111100 112333444


Q ss_pred             ecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        297 GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       297 ~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                      ..+  ..+.|.....    +....   .+.|...+........ ..........+.+.++.......|+|.|.|..|...
T Consensus       325 ~~g--~~~~l~C~~~----g~p~p---~v~W~~~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  394 (404)
T 3p3y_A          325 APG--EDGRLVCRAN----GNPKP---TVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL  394 (404)
T ss_dssp             CTT--CCEEEECEEE----EESCC---EEEEEETTEEGGGSCC-CTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEE
T ss_pred             ecC--CcEEEEEEcc----ccCCC---ceEEEECCEecCCCCC-CceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEE
Confidence            333  3455555441    11111   4677766511100000 000000112567888887777889999999988754


Q ss_pred             C
Q psy12061        377 E  377 (626)
Q Consensus       377 ~  377 (626)
                      .
T Consensus       395 ~  395 (404)
T 3p3y_A          395 A  395 (404)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.93  E-value=4.2e-25  Score=195.19  Aligned_cols=168  Identities=23%  Similarity=0.379  Sum_probs=144.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.+.+.|+|++..+....++.+..++   +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        19 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~   98 (197)
T 3lcy_A           19 TKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ   98 (197)
T ss_dssp             EETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEE
Confidence            568999999999999999999999999999888888887777   79999999999999999999999998888999998


Q ss_pred             eCCceeee--CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--c--CCeEEEeecCC-
Q psy12061         79 HGPSYYEQ--LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--D--GGLLEITNASF-  151 (626)
Q Consensus        79 ~~p~~~~~--~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~-  151 (626)
                      .+|.+...  .+....+..|+.+.|.|.+.+.|.|  .+.|++++..+....       ++..  .  ...|.|.++.. 
T Consensus        99 ~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~  169 (197)
T 3lcy_A           99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLLQNSE-------NITIENTEHYTHLVMKNVQRK  169 (197)
T ss_dssp             EEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCCS-------SEEEEECSSEEEEEESSCCHH
T ss_pred             cCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC--eeEEeECCEECCCCC-------ceEEEEcCCEEEEEEccccch
Confidence            87766543  2456788999999999999999887  468999999987542       2222  1  26899999985 


Q ss_pred             CCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        152 ADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      +|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       170 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          170 THAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             HHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             hhCceEEEEEEcCcCceEEEEEEEEec
Confidence            899999999999999999999998865

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.93  E-value=6e-25  Score=216.38  Aligned_cols=277  Identities=14%  Similarity=0.129  Sum_probs=198.6

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |..+...|++..+..|++++|.|.+. .  +  .|.|++||..+...        ++....+.|+|.+++..|.|.|.|.
T Consensus       203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~-~--~--~I~W~~ng~~i~~~--------ri~~~~~~L~I~nl~~sd~g~y~~~  269 (488)
T 2q7n_A          203 NTETNVFPQDKVVLAGSNMTICCMSP-T--K--VLSGQIGNTLRPLI--------HLYGQTVAIHILNIPVSENSGTNII  269 (488)
T ss_dssp             CSSCCEECTTCEEESSCCCEEEECCS-S--C--EEEEEETTEECCCE--------ECSSSCEEEECCSCCCCCSSCEEEE
T ss_pred             CCceEECCCCCEEcCCCCEEEEEECC-C--C--EEEEEECCEECchh--------hccceEEEEEEeCCCcccCCcEEEE
Confidence            33344567888899999999999998 2  3  56899999887543        2223456899999999999998887


Q ss_pred             EEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCC---CcccEEEEEEeecCCC-CceEeecceeeee
Q psy12061        161 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG---RPITHYKIIARTNWNS-TWFNVSEHVIGKE  236 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~---~~~~~y~v~~~~~~~~-~w~~~~~~~~~~~  236 (626)
                      +.+  +.....+.+.+..+|.+|.++.|......++.++|+++.+.+   .+...|.|.++..+.. .|.....      
T Consensus       270 C~~--~~~i~~~~l~v~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~------  341 (488)
T 2q7n_A          270 FIT--DDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEG------  341 (488)
T ss_dssp             EEE--SSCEEEEEEEEECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSC------
T ss_pred             EEc--CCeEEEEEEEeeCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccc------
Confidence            773  333558899999999999999998888899999999986652   4678999998754321 2221110      


Q ss_pred             eeccCCceeEEEEeeccC-CceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCC
Q psy12061        237 VDRYTGRKEASIENVLVP-WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREK  315 (626)
Q Consensus       237 ~~~~~~~~~~~i~~~l~~-~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~  315 (626)
                        .......+.+ . +.+ .+.|.|+|.|.|..|... + . ..+.+....++.+|.++.+...+.+++.|+|+++  ..
T Consensus       342 --~~~~~~~ct~-~-l~~~~t~Y~f~V~A~N~~G~~~-S-~-~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP--~~  412 (488)
T 2q7n_A          342 --LTNETYRLGV-Q-MHPGQEIHNFTLTGRNPLGQAQ-S-A-VVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP--GN  412 (488)
T ss_dssp             --CCSSCEEEEE-E-CCSSCCCCEEEEEEEETTEEEE-E-E-EECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEE--EE
T ss_pred             --cCCceEEEEE-c-CCCCccEEEEEEEEEeCCCCcc-c-e-EEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCC--CC
Confidence              0012233444 3 555 599999999999999843 3 2 2333344456689999999888889999999994  33


Q ss_pred             cccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCC---CCCCccEEEEccCC
Q psy12061        316 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP---GPESEVVTIFSAED  388 (626)
Q Consensus       316 ~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~---~~~s~~~~~~t~~~  388 (626)
                      .++.+..|.|+|+..+...|...............+.+.+|.|++.|.|+|+|.+ .|.   |+||..+.++|.++
T Consensus       413 ~~g~~l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~  487 (488)
T 2q7n_A          413 FTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEA  487 (488)
T ss_dssp             CSSSEEEEEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCC
T ss_pred             CCCcceEEEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCC
Confidence            4567899999999887665632111111112334458999999999999999999 887   57777667766543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=3.8e-25  Score=197.60  Aligned_cols=173  Identities=25%  Similarity=0.443  Sum_probs=135.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-c---CCcEEEccCC-CCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-E---NGNLLISPVS-RDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-~---~g~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+....+. .   +..|.|.+++ .+|+|.|+|.|.|..|.....+.|.
T Consensus        18 v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~   97 (212)
T 2yd6_A           18 GVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT   97 (212)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEE
Confidence            568999999999999999999999999999755433322 1   2259999995 9999999999999999988888999


Q ss_pred             EEeCC------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEE
Q psy12061         77 VLHGP------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEI  146 (626)
Q Consensus        77 v~~~p------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i  146 (626)
                      |...+      +.+...|....+..|++++|.|.+.+.|.|  .+.|+++|..+.....    ..++..    ..+.|.|
T Consensus        98 V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~g~~l~~~~~----~~~~~~~~~~~~~~L~i  171 (212)
T 2yd6_A           98 VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNN----NGRIKQLRSESIGALQI  171 (212)
T ss_dssp             EECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEEC----------CCEEEEEETTEEEEEE
T ss_pred             EeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC--eEEEEECCccccCcCC----CceEEEEecCCeEEEEE
Confidence            98742      223345677889999999999999999876  4699999999875410    122222    2478999


Q ss_pred             eecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCCC
Q psy12061        147 TNASFADAGEYECVVKSTVGKI-STKTTVIVEGPP  180 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P  180 (626)
                      .+++.+|+|.|+|.|.|..|.. +..+.|.+..+|
T Consensus       172 ~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          172 EQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            9999999999999999999986 456788877655

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=8.6e-25  Score=191.66  Aligned_cols=165  Identities=22%  Similarity=0.305  Sum_probs=137.2

Q ss_pred             CC-CceEEEEeeeCCCCC--CeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          3 GE-GGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         3 ~~-G~~~~l~C~~~g~p~--p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      .+ |++++|.|.+.+.|.  +.+.|+|+|..+..+.+..  .++.|.|.+++.+|+|.|+|.|.|. |.....+.|.|..
T Consensus        15 ~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~   91 (190)
T 2wv3_A           15 RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKA   91 (190)
T ss_dssp             CCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC--SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEEC
T ss_pred             ccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe--ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEec
Confidence            34 999999999999887  7999999999997654332  4568999999999999999999999 8888889999988


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccccCCccCCCeeEec----CCeEEEeecC-CC
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMDLNELETPNINID----GGLLEITNAS-FA  152 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~-~~  152 (626)
                      +|.+... +....+..|++++|.|.+.+.|.|  .+.|++  +|..+....    ...++...    .+.|.|.+++ .+
T Consensus        92 ~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~g~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~~  164 (190)
T 2wv3_A           92 APDITGH-KRSENKNEGQDAMMYCKSVGYPHP--EWMWRKKENGVFEEISN----SSGRFFIINKENYTELNIVNLQITE  164 (190)
T ss_dssp             CCEEEEE-CSEEEEETTSCEEEEEEEECSSCC--EEEEEEEETTEEEECCC----TTSCEEEEECSSEEEEEECSCCTTT
T ss_pred             CCccccc-CCcceeeCCCcEEEEEEeCccCCC--ceEEEEcCCCceeeeec----CCCeEEEecCCCeeEEEEEeccccC
Confidence            8877654 677889999999999999999887  568999  788775321    11333332    1379999999 79


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      |+|.|+|.|.|..|..+..+.|.|.
T Consensus       165 d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          165 DPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999999999999999988875

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.93  E-value=4.9e-24  Score=197.75  Aligned_cols=231  Identities=18%  Similarity=0.158  Sum_probs=167.9

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.+.|.+ .|.|+|+|..+...       +++|.|.+++.+|+|.|+|.|.|..+.  ..+.|.|..+
T Consensus        13 v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s--~~~~l~v~~~   83 (262)
T 3rjd_A           13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRS--DPIQLEIHRG   83 (262)
T ss_dssp             EETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCC--CCEEEEEECS
T ss_pred             eeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCcc--ccEEEEEecc
Confidence            5689999999999999988 99999999998643       467999999999999999999986654  4577777766


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      |....  +....+.+|++++|.|.+ .+.|.+  .+.|+++|..+...           ..++.|.|.+++.+|+|.|+|
T Consensus        84 ~~~~~--~~~~~~~~g~~v~l~C~~~~~~p~~--~v~W~~~g~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C  148 (262)
T 3rjd_A           84 WLLLQ--VSSRVFTEGEPLALRCHAWKDKLVY--NVLYYRNGKAFKFF-----------HWNSNLTILKTNISHNGTYHC  148 (262)
T ss_dssp             SEEEE--ESCSEEETTSCEEEEEEEGGGCCCE--EEEEEETTEEEEEE-----------EECCCEEESSCCGGGCEEEEE
T ss_pred             ceEec--CCCeEEecCCeEEEEEEccCCCCCc--eEEEEECCcccccc-----------CCCCeEEEEECChhhCEEEEE
Confidence            54433  445678899999999999 555544  66999999988542           146789999999999999999


Q ss_pred             EEEeCCCceEEEEEEEEeCCCCCCCceEE----EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061        160 VVKSTVGKISTKTTVIVEGPPGLPGGVQV----VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK  235 (626)
Q Consensus       160 ~a~n~~g~~~~~~~l~v~~~P~~p~~~~~----~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~  235 (626)
                      .+.|..+..+..+.|.|..++.+|. +..    .......+.|.|........+...+.+.+.        +....+...
T Consensus       149 ~~~n~~~~~~~~~~l~V~~~~~~p~-~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~--------~~~~~~~~~  219 (262)
T 3rjd_A          149 SGMGKHRYTSAGISVTVKELFPAPV-LNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY--------MGSKTLRGR  219 (262)
T ss_dssp             EEESSSEEEEECEEEEEECSSCCCE-EEESSCSSEETTCCEEEEEECCCCCC-----EEEEEE--------ETTEEEEEE
T ss_pred             EEeCCCCccccceEEEeccCCCCCe-EeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEE--------eCCcEeccc
Confidence            9999998888889999987654442 111    123456788888854322112223333333        222221110


Q ss_pred             eeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        236 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       236 ~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                           .....+.+.+ +...+.+.|+|.|.|..|..
T Consensus       220 -----~~~~~L~i~~-v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          220 -----NTSSEYQILT-ARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -----ESCCEEEESS-CCGGGCEEEEEEEEETTSSC
T ss_pred             -----CCCceEEEEE-echhhCeEEEEEEEcccCce
Confidence                 1223455655 89999999999999999853

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.93  E-value=4.5e-25  Score=197.51  Aligned_cols=169  Identities=22%  Similarity=0.296  Sum_probs=136.8

Q ss_pred             CCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          4 EGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      +|+.+.|.|.+.|. |.|.|.|+|+|..|..+.++.+..++   +|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~   95 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA   95 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHH
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEee
Confidence            35556666666664 68899999999999988888876655   399999999999999999999888877777776542


Q ss_pred             --------------------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe
Q psy12061         80 --------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI  139 (626)
Q Consensus        80 --------------------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  139 (626)
                                          .|.+....|....+..|++++|.|.+.+.|.|.  +.|+|++..+....     ...+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--v~W~~~~~~~~~~~-----~~~~~~  168 (212)
T 2r15_A           96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE--VSWLKNEKALAQTD-----HCNLKF  168 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCE--EEEEETTEEECCCS-----SEEEEE
T ss_pred             ccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCce--EEEEECCeECccCC-----CEEEEE
Confidence                                566666667788999999999999999998874  68999999997642     112222


Q ss_pred             c---CCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        140 D---GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       140 ~---~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      .   ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus       169 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            2   238999999999999999999999999999999988743

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.93  E-value=4e-24  Score=189.60  Aligned_cols=197  Identities=18%  Similarity=0.270  Sum_probs=157.6

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEEEEE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK  365 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~  365 (626)
                      ++.+|.++.+.. +.+++.|+|++  +.+.++++.+|.|+|+... ...|.........+  ...+.+ +|.|++.|.|+
T Consensus         5 ~P~~P~~~~~~~-~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~--~~~~~~-~L~p~t~Y~~~   78 (205)
T 1cfb_A            5 VPNAPKLTGITC-QADKAEIHWEQ--QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT--DSSFVV-QMSPWANYTFR   78 (205)
T ss_dssp             CCCCCEEEEEEE-CSSEEEEEEEC--CCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETT--CSEEEE-ECCSSEEEEEE
T ss_pred             CCCCCCCcEEEe-cCCEEEEEEEC--cccCCCceEEEEEEEecCCCCCCceeeeeccCCC--ceEEEE-eCCCCCEEEEE
Confidence            346889999988 99999999998  4567788999999998765 46676443332222  224456 89999999999


Q ss_pred             EEEecCCCCCCCC-ccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEE
Q psy12061        366 VQAINDVGPGPES-EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY  444 (626)
Q Consensus       366 v~a~n~~g~~~~s-~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~  444 (626)
                      |+|.|..|.|.+| ....++|.+..|..+|.++++...+.+++.|+|++|.....  +|.+.+|.|+|+..+........
T Consensus        79 V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~--ng~i~~Y~v~~~~~~~~~~~~~~  156 (205)
T 1cfb_A           79 VIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEH--NAPNFHYYVSWKRDIPAAAWENN  156 (205)
T ss_dssp             EEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGT--CSSSCEEEEEEEESSTTCCCEEE
T ss_pred             EEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCcccc--CCCceEEEEEEEECCCCCCcEEE
Confidence            9999999999988 56788888888887899999999899999999999874322  37799999999887765423333


Q ss_pred             EEecCccceEEEeCCccCceEEEEEEEeeCCCCCCC-CccEEEeecCC
Q psy12061        445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE-SERYLERTYRK  491 (626)
Q Consensus       445 ~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~-s~~~~~~t~~~  491 (626)
                      .........+.+.+|.|++.|.|+|+|.|..|.|++ |..+.++|.++
T Consensus       157 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e~  204 (205)
T 1cfb_A          157 NIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED  204 (205)
T ss_dssp             EECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESSSC
T ss_pred             EecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecCCC
Confidence            333335677999999999999999999999999995 78888888765

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.93  E-value=1.9e-24  Score=192.33  Aligned_cols=188  Identities=19%  Similarity=0.232  Sum_probs=148.2

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccce-eeEEEEEEEEecCCCccceEEEEe--cCccceEEEeCCccCc
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEETAVYYLS--RTTRNWALIVGLQPDT  463 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~-~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t  463 (626)
                      .+.|. +|.++++...+. ++.|+|++|...+    | .+.+|.|+|+..+...+.......  ......+.+.+|+|++
T Consensus         6 ~~~P~-~P~~~~~~~~~~-s~~l~W~~p~~~~----g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   79 (209)
T 2vkw_A            6 ADTPS-SPSIDQVEPYSS-TAQVQFDEPEATG----GVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET   79 (209)
T ss_dssp             CCCCC-CCEEEEEEECSS-CEEEEEECCSCCC----SSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTC
T ss_pred             cCCCc-CCcccEeeeccC-eEEEEEcCCCcCC----CcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCC
Confidence            44565 789999988777 6899999985432    4 389999999877665544332221  1234569999999999


Q ss_pred             eEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc
Q psy12061        464 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA  543 (626)
Q Consensus       464 ~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~  543 (626)
                      .|.|+|+|.|..|.|++|....+.|....++.+|.++.+...+.+++.|+|+  +|.+.++.|.+|.|+|+..+..+   
T Consensus        80 ~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~--~p~~~~~~i~~Y~v~~~~~~~~~---  154 (209)
T 2vkw_A           80 TYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLI--KQDDGGSPIRHYLVRYRALSSEW---  154 (209)
T ss_dssp             EEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEE--CCCCTTSCCCEEEEEEEETTSCC---
T ss_pred             eEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEE--CcccCCCCCceEEEEEECCCCCC---
Confidence            9999999999999999999888888876344578788888889999999999  56778899999999988722221   


Q ss_pred             cceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCC
Q psy12061        544 NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP  585 (626)
Q Consensus       544 ~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~  585 (626)
                      ..........+++.+.+|.|++.|.|+|+|+|..|.|++|++
T Consensus       155 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~  196 (209)
T 2vkw_A          155 KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF  196 (209)
T ss_dssp             CCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             ceeeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchh
Confidence            122344567789999999999999999999999999999964

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.93  E-value=5e-25  Score=223.29  Aligned_cols=189  Identities=12%  Similarity=0.170  Sum_probs=145.7

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEE---------EccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRK---------IFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~---------~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +.+|++++|.|.+. |.|.|.|.|+|+|..+....++.         ....++|.|.+++.+|+|.|+|.|.|.   ...
T Consensus       239 v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~  315 (527)
T 3qs9_E          239 LKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQ  315 (527)
T ss_dssp             ECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEE
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCc
Confidence            56899999999996 99999999999999886543322         122346999999999999999999998   667


Q ss_pred             eEEEEEEeCCceeeeC-CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC
Q psy12061         72 KGRLIVLHGPSYYEQL-PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS  150 (626)
Q Consensus        72 ~~~l~v~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  150 (626)
                      .+.|.|..+|.+...+ .....+.+|+++.|.|.+.+.|.|.  |.|+|||..+....       +....+..|.|.+++
T Consensus       316 ~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~k~g~~l~~~~-------~~~~~~~~L~I~~v~  386 (527)
T 3qs9_E          316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR--CTWTFSRKSFPCEQ-------KGLDNGYSISKFCNH  386 (527)
T ss_dssp             EEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCE--EEEEETTEEEECBC-------CBCSSSSEEEEECCC
T ss_pred             eEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCE--EEEEECCEECcCCc-------ccccCCcEEEEecCC
Confidence            7889998777654333 2356788999999999999999874  69999999996542       223366789999999


Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeCCCCC---C--CceEEEEEeccceEEEEec
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEGPPGL---P--GGVQVVEVHKTSATIQWTD  202 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~---p--~~~~~~~~~~~~~~l~W~~  202 (626)
                      .+|+|.|+|.|.|..|..+..+.|.|..+|..   +  ..+.|...+.....+.|..
T Consensus       387 ~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~~~~l~C~a~g~P~p~i~W~~  443 (527)
T 3qs9_E          387 KHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKK  443 (527)
T ss_dssp             TTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCCCE---EEEECSSCCEEEEEC
T ss_pred             cccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCCCCEEEEEEEEEcCCeEEEEE
Confidence            99999999999999999999999999987742   1  2345555566666777764

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.93  E-value=4.4e-24  Score=190.28  Aligned_cols=199  Identities=23%  Similarity=0.261  Sum_probs=158.1

Q ss_pred             CCCCCCCceeEeecCCcCeEEEEEeeCC--CCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEE
Q psy12061        285 DKPYQAPSRIGGGGGKIGDLSISWEPLP--REKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY  362 (626)
Q Consensus       285 ~~p~~~p~~~~~~~~~~~~v~l~W~~~~--~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y  362 (626)
                      +.|+.+|.++.+...+.+++.|+|+++.  ....++.+.+|.|+|+..+...+.....    +.....+.+.+|.|++.|
T Consensus         2 d~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y   77 (211)
T 3p4l_A            2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA----NATTLSYLVTGLKPNTLY   77 (211)
T ss_dssp             -CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEE----EESSSEEEECSCCTTCEE
T ss_pred             CCCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEe----CCCceEEEecCcCCCCEE
Confidence            4577899999999999999999999842  2233678999999999876444332222    223456889999999999


Q ss_pred             EEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEee--ecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc
Q psy12061        363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE  440 (626)
Q Consensus       363 ~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~--~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~  440 (626)
                      .|+|+|.|..|.|.+|....+.|.+..|..+|.++++...  +.+++.|+|++|...    +|.+.+|.|+|+.......
T Consensus        78 ~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~  153 (211)
T 3p4l_A           78 EFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA----NGKITGYIIYYSTDVNAEI  153 (211)
T ss_dssp             EEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTC----CSCCCEEEEEEESCTTSCG
T ss_pred             EEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCC----CCCEEEEEEEEEECCCCCC
Confidence            9999999999999999999999999989878999999877  578999999998643    3779999999987665433


Q ss_pred             ce-EEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCC
Q psy12061        441 TA-VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK  491 (626)
Q Consensus       441 ~~-~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~  491 (626)
                      .. ...........+.+.+|.|++.|.|+|+|.|..|.|++|..+.+.+...
T Consensus       154 ~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~  205 (211)
T 3p4l_A          154 HDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA  205 (211)
T ss_dssp             GGSEEEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC--
T ss_pred             CceEEEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCccc
Confidence            21 2223345667799999999999999999999999999999999888753

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.93  E-value=1.6e-23  Score=198.87  Aligned_cols=276  Identities=13%  Similarity=0.100  Sum_probs=179.3

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.++.+.....+++.|+|+++ ....++...+|.+.|..    .|.... .  .  ..  +.+.+|.++..|.|+|+|
T Consensus         5 ~pP~nl~~~~~~~~~v~l~W~pP-~~~~~~~~~~Y~v~~~~----~~~~~~-~--~--~~--~~~~~~~~~~~y~~~V~a   72 (314)
T 3bpo_C            5 PPVTNLSVSVENLCTVIWTWNPP-EGASSNCSLWYFSHFGD----KQDKKI-A--P--ET--RRSIEVPLNERICLQVGS   72 (314)
T ss_dssp             CCCEEEEEEEETTTEEEEEEECC-SSCCCSSCCCEEECCC------CCCEE-E--S--SS--EEEEECCCSSCEEEEEEE
T ss_pred             CCCcceEEEeCCceEEEEEEcCC-CCCCCCceEEEEEEecc----cCceEe-c--c--cc--EEEEEEcCCCcEEEEEEE
Confidence            58899999888889999999993 33335677889988743    222111 1  1  11  233557788999999999


Q ss_pred             ec-CCCCCCCCccEEEE--ccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE-E
Q psy12061        369 IN-DVGPGPESEVVTIF--SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV-Y  444 (626)
Q Consensus       369 ~n-~~g~~~~s~~~~~~--t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~  444 (626)
                      .. ..|.|..+..+...  +.+..|+.+|.++.+...+.+++.++|+++...     +.+.+|.|+|+..+....... .
T Consensus        73 ~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~-----~~~~~Y~l~y~~~~~~~~~~C~~  147 (314)
T 3bpo_C           73 QCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNT-----SPDTNYTLYYWHRSLEKIHQCEN  147 (314)
T ss_dssp             CC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC--------CCCCEEEEEEESSCSSCEECCC
T ss_pred             EecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCC-----CCCccEEEEEEeCCCCccccCcC
Confidence            64 56666667766532  456677778999999988899999999988643     347789999987643321111 0


Q ss_pred             EEecCccceEEEeCCc----cCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCC
Q psy12061        445 YLSRTTRNWALIVGLQ----PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS  520 (626)
Q Consensus       445 ~~~~~~~~~~~i~~L~----p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~  520 (626)
                      ...........+..+.    .++.|.|+|.|.|..|.+..+ ...+.+...+.+.||.++++. ...+++.|+|++  |.
T Consensus       148 ~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~-~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~--P~  223 (314)
T 3bpo_C          148 IFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWEN--PQ  223 (314)
T ss_dssp             EEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-EEEECSSSSEECCCCEEEEEE-EETTEEEEEEEC--CT
T ss_pred             eecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-cEEEehhheEeeCCCCEEEEE-EcCCcEEEEEeC--CC
Confidence            1112233456677665    378999999999998887644 355655555555699999987 778899999994  44


Q ss_pred             CCCCceeeEEEEEEEeccCCccccce---------e-eecCccceEEecCCCCCceEEEEEEEEec------CC-CCCCC
Q psy12061        521 FEEEPIIGYKVRVWEVDQDMSRANDT---------I-IPVGNTLDADIVDLSPGKRYHMRVLAFSN------GG-DGRMS  583 (626)
Q Consensus       521 ~~~~~i~~Y~i~~~~~~~~~~~~~~~---------~-~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~------~G-~g~~s  583 (626)
                      ..++.+.+|+|+|+..+...+.....         . ......+.+.|.+|+|++.|.|+|+|.+.      .| .|+||
T Consensus       224 ~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS  303 (314)
T 3bpo_C          224 NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWS  303 (314)
T ss_dssp             TCCGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCC
T ss_pred             ccCCceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCC
Confidence            44556789999998765442110000         0 01245678999999999999999999995      34 35666


Q ss_pred             CC
Q psy12061        584 SP  585 (626)
Q Consensus       584 ~~  585 (626)
                      .+
T Consensus       304 ~~  305 (314)
T 3bpo_C          304 QE  305 (314)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.93  E-value=5.5e-25  Score=194.15  Aligned_cols=160  Identities=20%  Similarity=0.299  Sum_probs=127.8

Q ss_pred             CCCCceEEEEeeeCCCCCCe-eEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|.|.+. |.|+|||..+....       ++|.|.+++.+|+|.|+|.|.|.  .....+.|.|..+
T Consensus        19 v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V~~~   89 (204)
T 3sgj_C           19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------SSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVHIG   89 (204)
T ss_dssp             EETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------SEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEEECS
T ss_pred             EECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------cEEEEecccccCCEEEEEEeCCC--cccccEEEEEecC
Confidence            56899999999999998875 99999999886543       77999999999999999999874  4456688888877


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.+... + ...+.+|++++|.|.+.+.+++ ..+.|+|||..+...           ..++.|.|.+++.+|+|.|+|.
T Consensus        90 p~~~~~-~-~~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~g~~~~~~-----------~~~~~L~i~~v~~~D~G~Y~C~  155 (204)
T 3sgj_C           90 WLLLQA-P-RWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKGRKYF-----------HHNSDFYIPKATLKDSGSYFCR  155 (204)
T ss_dssp             SEEEEC-S-CSEEETTCCEEEEEEEGGGCCC-EEEEEEETTEEEEEE-----------EECCCEEESSCCGGGCEEEEEE
T ss_pred             ceEecC-C-ceeEeCCCcEEEEEEecCCCCC-ceEEEEECCcEeecc-----------cCCceEEECcCCcccCEEEEEE
Confidence            765543 3 3778899999999999776442 367999999987532           1467899999999999999999


Q ss_pred             EEe-CCCceEEEEEEEEeCCCCCCC
Q psy12061        161 VKS-TVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       161 a~n-~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |.| ..+..+..+.|.|.++|..|.
T Consensus       156 a~n~~~~~~s~~~~l~V~~~~~~P~  180 (204)
T 3sgj_C          156 GLVGSKNVSSETVQITITQGLAVST  180 (204)
T ss_dssp             EEETTEEEECCCEEEEEEC------
T ss_pred             EEeCCCceecCcEEEEEeCcCCCCc
Confidence            999 555667888999998887764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.93  E-value=7.6e-25  Score=192.94  Aligned_cols=169  Identities=25%  Similarity=0.387  Sum_probs=137.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCC--cEEE-ccCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKI-FENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~--~~~~-~~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.+.|+|+|..+....  ++.+ ..++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        17 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~   96 (194)
T 2a38_A           17 VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL   96 (194)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEE
Confidence            5689999999999999999999999999987542  3333 2333  699999999999999999999999888888888


Q ss_pred             EEe--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC--eEEEeecCCC
Q psy12061         77 VLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG--LLEITNASFA  152 (626)
Q Consensus        77 v~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~  152 (626)
                      |..  .|+.+...+....+..|++++|.|.+.+.|.|.  +.|+++|..+.....     ..+...+.  .|.|.+++.+
T Consensus        97 v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~  169 (194)
T 2a38_A           97 VKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV--VKFYRDGAEIQSSLD-----FQISQEGDLYSLLIAEAYPE  169 (194)
T ss_dssp             EECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCE--EEEEETTEECCCSSS-----EEEEEETTEEEEEEEEECGG
T ss_pred             EccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCe--EEEEECCEECCCCCc-----EEEEEcCCEEEEEECCCChh
Confidence            873  333344456788999999999999999988874  699999999875421     11222222  7999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      |+|.|+|.|.|..|..+..+.|.|+
T Consensus       170 d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          170 DSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCeEEEEEEEeCCCceEEEEEEEEC
Confidence            9999999999999999998888874

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=2.3e-23  Score=213.74  Aligned_cols=262  Identities=13%  Similarity=0.116  Sum_probs=160.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.|.|.+.|.|+|++  ..+.            ..+|+.+..++   +|.|.+++.+|+|.|+|.|.|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   91 (523)
T 2rcj_C           12 GTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWN   91 (523)
T ss_pred             EecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEcc
Confidence            578999999999999999999999974  2211            13566643332   699999999999999999999


Q ss_pred             CCCC---ceeeEEEEEE----eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc----C
Q psy12061         65 VHGM---DESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL----E  133 (626)
Q Consensus        65 ~~g~---~~~~~~l~v~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~----~  133 (626)
                      ..|.   ....+.|.|.    .+|.+.. .+....+.+|++++|.|.+.+.|++.+++.|+|||..+........    .
T Consensus        92 ~~g~~~~~~~~~~l~V~~~~~~~P~~~~-~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  170 (523)
T 2rcj_C           92 SSDNSYVFGTGTKVTVLGQPKANPTVTL-FPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQS  170 (523)
T ss_pred             CCCccccccCceEEEeccCCCcCCeEEe-cCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccC
Confidence            8764   2345788884    3454443 3555567789999999999998876567899999998864321000    0


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeC-CCCCCCce----EEEEEeccceEEEEecCCCCCC
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG-PPGLPGGV----QVVEVHKTSATIQWTDGATNGR  208 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~-~P~~p~~~----~~~~~~~~~~~l~W~~~~~~~~  208 (626)
                      ...+ ...+.|.|.+++.+|+|.|+|.|.|..|.....+.+.+.. .+.+|.-.    .........+.|.|........
T Consensus       171 ~~~~-~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~  249 (523)
T 2rcj_C          171 NNKY-AASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQ  249 (523)
T ss_pred             CCCE-EEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCC
Confidence            0000 0123699999999999999999999998776666543321 12222110    0011234556666653211111


Q ss_pred             cccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        209 PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       209 ~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ++   .|.|..++...-... ..........+.....+.|.. +...+ +.|+|.|.|..|..
T Consensus       250 p~---~v~W~k~g~~~~~~~-~~~~~~~~g~~~~~s~L~i~~-~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          250 PV---TVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPS-SSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             Ce---EEEEecCCcccceEe-CCcEecCCCcEEEEEEEEech-hhcCC-ceEEEEEEeCCCCc
Confidence            11   223322221100000 000000000111122455554 77778 99999999999864

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.93  E-value=1.2e-25  Score=197.02  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=120.2

Q ss_pred             CCCCceEEEEee---eCCCCCCeeEEEeCCEEccC-----------------CCcEEEccC---CcEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCN---PEAAPKPKFVWKKDGNIIGS-----------------GGRRKIFEN---GNLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~---~~g~p~p~i~W~~~~~~i~~-----------------~~~~~~~~~---g~L~i~~v~~~d~G~Y   58 (626)
                      |..|++++|.|.   +.+.|.|.|.|+|+|..+..                 ..++.+..+   .+|.|.+++.+|+|.|
T Consensus         5 a~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (203)
T 4fa8_A            5 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY   84 (203)
T ss_dssp             EETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEE
Confidence            468999999994   67889999999998753311                 122222222   2699999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE
Q psy12061         59 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN  138 (626)
Q Consensus        59 ~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  138 (626)
                      +|.|.|..|.....+.|.|..+|.+. ..+.+..+.+|++++|.|.+.|.|.|.  |.|++++..+....   ....++.
T Consensus        85 ~C~a~n~~g~~~~~~~l~V~~p~~~~-~~~~~~~v~~g~~~~l~C~~~G~P~P~--v~W~~~~~~~~~~~---~~~~r~~  158 (203)
T 4fa8_A           85 LCRMKLGETEVTKQEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFPHPH--VQWLMPEGVEPAPT---AANGGVM  158 (203)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEEE-EEEEECCSSCSCCEEEEEEEEEESCCE--EEECCC---------------CCE
T ss_pred             EEEEEcCCCcEEEEEEEEecCCceee-ecceeEEEcCCCEEEEEEEcCCCCCCE--EEEEECCeeecCcc---cccceEE
Confidence            99999999999999999997766554 456778889999999999999999885  58998765543211   1113333


Q ss_pred             e-cCCeEE---EeecCCCCCEeEEEEEEeCCCceEE
Q psy12061        139 I-DGGLLE---ITNASFADAGEYECVVKSTVGKIST  170 (626)
Q Consensus       139 ~-~~~~l~---i~~~~~~d~g~Y~C~a~n~~g~~~~  170 (626)
                      . .++.|.   |.+++.+|+|.|+|.|.|..|.++.
T Consensus       159 ~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          159 KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            3 445544   4689999999999999999998765

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=6.5e-25  Score=193.85  Aligned_cols=169  Identities=21%  Similarity=0.231  Sum_probs=139.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEc--cCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIF--ENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~--~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.+.|.|+|+|..+... .++.+.  .++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        16 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~   95 (197)
T 2j8h_A           16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE   95 (197)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEE
Confidence            568999999999999999999999999998754 455553  344  799999999999999999999999888888999


Q ss_pred             EEeCCceeee----CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEee-c
Q psy12061         77 VLHGPSYYEQ----LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITN-A  149 (626)
Q Consensus        77 v~~~p~~~~~----~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~-~  149 (626)
                      |..+|.+...    .+....+..|++++|.|.+.+.|.|  .+.|++++..+.....     ..+..  ..+.|.|.+ +
T Consensus        96 V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~  168 (197)
T 2j8h_A           96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLIDNNGH-----YQVIVTRSFTSLVFPNGV  168 (197)
T ss_dssp             EEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCC--EEEEEESSCEECSSSS-----CEEEECSSEEEEECTTCC
T ss_pred             EcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCC--cEEEEECCEEeecCCC-----EEEEEcCCceEEEEeCCC
Confidence            9876655321    1345778899999999999999876  5689999999875421     11111  346899999 9


Q ss_pred             CCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        150 SFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      ..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       169 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          169 ERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999999999999999999999998875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=207.83  Aligned_cols=249  Identities=15%  Similarity=0.203  Sum_probs=166.5

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|++++|.|... |.|.|.|.|+|||.++..+.|+.+..+|   +|.|.+++.+|+|.|+|.|.|..|... .+.+.|
T Consensus        13 v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v   91 (312)
T 2y23_A           13 VDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDE   91 (312)
T ss_dssp             ECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECH
T ss_pred             EecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEE
Confidence            56899999999885 5799999999999999988888887765   799999999999999999999988544 556666


Q ss_pred             Ee------------CCceeeeCCCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCeeEec--C-
Q psy12061         78 LH------------GPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINID--G-  141 (626)
Q Consensus        78 ~~------------~p~~~~~~~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~-  141 (626)
                      ..            +|.+...++....+.+|++++|.|.+. +.|.+  .+.|++++..+.....     ..+...  . 
T Consensus        92 ~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~~~~i~~~~~-----~~~~~~~~~~  164 (312)
T 2y23_A           92 EELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEIFEGPK-----YKMHIDRNTG  164 (312)
T ss_dssp             HHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSC--EEEEEETTEEECSSSS-----CEEEEETTTT
T ss_pred             eeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCC--EEEEEECCEECeeCCc-----EEEEEccCCC
Confidence            43            565555444588899999999999999 77765  5689999999876421     122211  2 


Q ss_pred             -CeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE-------------------eCCCCCCCceEEEEEeccceEEEEe
Q psy12061        142 -GLLEITNASFADAGEYECVVKSTVGKISTKTTVIV-------------------EGPPGLPGGVQVVEVHKTSATIQWT  201 (626)
Q Consensus       142 -~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v-------------------~~~P~~p~~~~~~~~~~~~~~l~W~  201 (626)
                       ..|.|.+++.+|+|.|+|.+.|..+.......+..                   ..+|..-..+.........+.|.|.
T Consensus       165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~  244 (312)
T 2y23_A          165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCK  244 (312)
T ss_dssp             EEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEE
T ss_pred             EEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEE
Confidence             24999999999999999999865544433333210                   0112110111223334566777776


Q ss_pred             cCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeecc-CCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        202 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY-TGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       202 ~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      .... ..+. .  +        .|.+....+........ .+...+.|.+ +...+.+.|+|.|.|..|..
T Consensus       245 ~~~~-p~~~-~--v--------~W~~~g~~~~~~~~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~N~~G~~  302 (312)
T 2y23_A          245 VANI-KKET-H--I--------VWYKDEREISVDEKHDFKDGICTLLITE-FSKKDAGIYEVILKDDRGKD  302 (312)
T ss_dssp             EESC-CSSC-E--E--------EEEETTEEEEEECCC----CEEEEEECS-CSGGGCEEEEEEEESTTCCE
T ss_pred             EcCC-CCCC-E--E--------EEeeCCEECCCCCcEEEECCEEEEEECc-CCHHHCEEEEEEEEcCCCce
Confidence            4221 1110 1  2        23332222211111111 2223566655 99999999999999999854

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.93  E-value=1.4e-22  Score=211.19  Aligned_cols=356  Identities=15%  Similarity=0.135  Sum_probs=217.5

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEcc-------------CCCcEEEccCC------cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIG-------------SGGRRKIFENG------NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~-------------~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~   61 (626)
                      +.+|++++|.|.+.+. |.+.+.|+|++..+.             ..+|+.+..++      +|.|.+++.+|+|.|+|.
T Consensus       124 v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  203 (585)
T 2ocw_A          124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQ  203 (585)
T ss_pred             EEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEE
Confidence            5689999999999876 456899999876421             13566776555      699999999999999999


Q ss_pred             EEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcc-eeEEEe-eCCEE----eccccC-CccCC
Q psy12061         62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD-VAYIWT-HNGVR----IGNMDL-NELET  134 (626)
Q Consensus        62 a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~-~~i~W~-~~~~~----~~~~~~-~~~~~  134 (626)
                      |.|..|.....+.|.|..+|      |..+.+.+|++++|.|.+ +.+.|. +.|.|+ +||..    +..... .....
T Consensus       204 a~n~~g~~~~~~~l~V~~~~------p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~  276 (585)
T 2ocw_A          204 AGDDSNSNKKNADLQVLKPE------PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE  276 (585)
T ss_pred             eccCCccccceEEEEEccCC------CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccC
Confidence            99999998888999996643      455678899999999997 444443 788997 88842    211110 00012


Q ss_pred             CeeEec----CC--eEEEeecCCCCCEeEEEEEEeCCCceE-----EEEEEEEeCCCCCCCceE-EEEEeccceEEEEec
Q psy12061        135 PNINID----GG--LLEITNASFADAGEYECVVKSTVGKIS-----TKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTD  202 (626)
Q Consensus       135 ~~~~~~----~~--~l~i~~~~~~d~g~Y~C~a~n~~g~~~-----~~~~l~v~~~P~~p~~~~-~~~~~~~~~~l~W~~  202 (626)
                      .++...    ++  .|.|.+++.+|+|.|+|.|.|. |...     ..+.|.|..+|..+..+. ........+.|.|..
T Consensus       277 ~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~  355 (585)
T 2ocw_A          277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY  355 (585)
T ss_pred             CceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec
Confidence            333332    34  7999999999999999999995 4443     788899988876543322 223456678888885


Q ss_pred             CCCCCCcccEEEEEEee--cCCCCceEee---------cceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        203 GATNGRPITHYKIIART--NWNSTWFNVS---------EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       203 ~~~~~~~~~~y~v~~~~--~~~~~w~~~~---------~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      .. ...+...|.+.|..  ++........         ...... .....+...+.|.+ +...+.+.|+|.| |..|..
T Consensus       356 ~~-~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~-~~~~~g~~~L~I~~-v~~~D~G~Y~C~a-n~~g~~  431 (585)
T 2ocw_A          356 NR-KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLL-EEPGNGTFTVILNQ-LTSRDAGFYWCLT-NGDTLW  431 (585)
T ss_pred             CC-CCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEe-ccCCCcEEEEEECC-CChhhCEEEEEcc-cCCCcc
Confidence            32 22333345445544  3221010000         000000 00001222355555 8999999999999 877754


Q ss_pred             CCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceee-------eeeeec
Q psy12061        272 EPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE-------TLKEYG  344 (626)
Q Consensus       272 ~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~-------~~~~~~  344 (626)
                      ...... .+...+ +....|..+.+..  ...+.|.+.... ...+  .-.+.|.|.+.+.......       ......
T Consensus       432 ~~~~~l-~V~~~~-p~~~~~~~~~v~~--G~~v~L~C~~~~-~~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~  504 (585)
T 2ocw_A          432 RTTVEI-KIIEGE-PNLKVPGNVTAVL--GETLKVPCHFPC-KFSS--YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDE  504 (585)
T ss_pred             ceeEEE-EEecCc-cccccCCceeEec--CCcEEEEEEecC-CCCC--CccEEEEEeecCceeeeccCCCCCcceEEecC
Confidence            322221 111111 1112244444443  356788887621 1111  1235777877652110000       011111


Q ss_pred             ceeeEEEEeCCCcceeEEEEEEEEecCCCCCC
Q psy12061        345 NVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP  376 (626)
Q Consensus       345 ~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~  376 (626)
                      +.....+.|.++.......|+|.|.|..|.+.
T Consensus       505 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  536 (585)
T 2ocw_A          505 NSRLVSLTLNLVTRADEGWYWCGVKQGHFYGE  536 (585)
T ss_pred             cccEEEEEECCCCcccCeEEEEEeEeCCCccE
Confidence            22335788888888888889999999998655

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.93  E-value=6e-25  Score=199.69  Aligned_cols=182  Identities=23%  Similarity=0.381  Sum_probs=142.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc----EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~----~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+....+    .....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        31 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V  110 (231)
T 3ojm_B           31 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV  110 (231)
T ss_dssp             EETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEE
Confidence            56899999999999999999999999999875433    23334457999999999999999999999998888888988


Q ss_pred             EeC----CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee----CCEEeccccCCccCC----CeeEecCCeEE
Q psy12061         78 LHG----PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH----NGVRIGNMDLNELET----PNINIDGGLLE  145 (626)
Q Consensus        78 ~~~----p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~----~~~~~~~~~~~~~~~----~~~~~~~~~l~  145 (626)
                      ...    |.+....+....+..|++++|.|.+.+.|.|  .+.|++    +|..+..........    .......+.|.
T Consensus       111 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~  188 (231)
T 3ojm_B          111 VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA  188 (231)
T ss_dssp             ECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC--EEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEE
T ss_pred             EcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC--EEEEEECCCCCCccccCCCcceEeEecccccccCCccEEE
Confidence            763    3334444677899999999999999999877  568999    777775442111100    00112346799


Q ss_pred             EeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCc
Q psy12061        146 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG  185 (626)
Q Consensus       146 i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~  185 (626)
                      |.++..+|+|.|+|.|.|..|..+..+.|.|..+|.+|..
T Consensus       189 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          189 LFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred             EecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence            9999999999999999999999999999999999988854

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=191.26  Aligned_cols=169  Identities=21%  Similarity=0.315  Sum_probs=134.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce--eeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~v   77 (626)
                      +.+|++++|.|.+.+.|.+.+.|+|++..+.  ...|+.+..+++|.|.+++.+|+|.|+|.|.|..+...  ....+.|
T Consensus        14 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v   93 (189)
T 2v5t_A           14 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV   93 (189)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEe
Confidence            5689999999999999999999999999886  46788888889999999999999999999999876543  3456777


Q ss_pred             EeCCceeeeCCC-ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         78 LHGPSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        78 ~~~p~~~~~~~~-~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      ..+|.+...+.. ...+..|++++|.|.+.+.|.|  .+.|+++|..+.....     ......++.|.|.++..+|+|.
T Consensus        94 ~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~  166 (189)
T 2v5t_A           94 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEK-----YILKGSNTELTVRNIINSDGGP  166 (189)
T ss_dssp             EEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC--EEEEEETTEECCCSSS-----EEEETTTTEEEECSCCGGGCEE
T ss_pred             cCCCCcccccccccccccCCCcEEEEEEEccCCCC--eEEEEECCEECcCCCc-----EEEecCCCEEEEcCCChhhCee
Confidence            667665543222 4577889999999999998876  5699999999875421     1222346789999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEe
Q psy12061        157 YECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      |+|.|.|..|..+..+.|.|.
T Consensus       167 Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          167 YVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCceeEEEEEEEE
Confidence            999999999999888888875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=1.3e-25  Score=216.40  Aligned_cols=258  Identities=21%  Similarity=0.260  Sum_probs=107.6

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|. |.|.|.|+|||..+..+.|+.+ .+++|.|.+++.+|+|.|+|.|.|. |.....+.|.|...
T Consensus        20 v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~   97 (334)
T 1ry7_B           20 FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDA   97 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe-ccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEecc
Confidence            6789999999999987 6789999999999987777665 5678999999999999999999999 77777778888654


Q ss_pred             Cc---------------------eeeeC----CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCC
Q psy12061         81 PS---------------------YYEQL----PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP  135 (626)
Q Consensus        81 p~---------------------~~~~~----~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~  135 (626)
                      |.                     .+..+    +....+.+|++++|.|.+.+.|.|  .+.|+|++..+......  ...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~~~--~~~  173 (334)
T 1ry7_B           98 PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRI--GGI  173 (334)
T ss_dssp             ---------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCC--EEECCBTTBCCCTTSST--TCC
T ss_pred             CccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCC--eEEEEECCEECcccccc--cce
Confidence            32                     22211    234678899999999999998876  56999999988654210  011


Q ss_pred             eeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCC-CCCc-----eEEEEEeccceEEEEecCCCCCCc
Q psy12061        136 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG-LPGG-----VQVVEVHKTSATIQWTDGATNGRP  209 (626)
Q Consensus       136 ~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~-~p~~-----~~~~~~~~~~~~l~W~~~~~~~~~  209 (626)
                      ........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+. +|..     ..........+.|.|...   +.+
T Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~---g~p  250 (334)
T 1ry7_B          174 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY---SDA  250 (334)
T ss_dssp             CCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB---CSS
T ss_pred             ecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe---cCC
Confidence            2223567899999999999999999999999999999999886432 2210     112233455677777642   222


Q ss_pred             ccEEEEEEee----cCCCCceEeecc-eeeeee---ec-cCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        210 ITHYKIIART----NWNSTWFNVSEH-VIGKEV---DR-YTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       210 ~~~y~v~~~~----~~~~~w~~~~~~-~~~~~~---~~-~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                      ..  .+.|..    ++.. ....... ......   .. ......+.+.+ +...+.+.|+|.|.|..|...
T Consensus       251 ~p--~v~W~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~  318 (334)
T 1ry7_B          251 QP--HIQWLKHVEVNGSK-VGPDGTPYVTVLKTAGANTTDKELEVLSLHN-VTFEDAGEYTCLAGNSIGFSH  318 (334)
T ss_dssp             CE--EEEEEECCCGGGCS-BCTTSSBCCCCCCCSSCSCSCTTCCCEEECS-CCTTSCSEEEEEEEESSCCEE
T ss_pred             CC--eEEEEECCcCCCcc-ccCCCCeeEEEeecCccccccccccEEEEcc-CCHHHCEEEEEEEeCCCCeEE
Confidence            22  233322    1100 0000000 000000   00 00112466655 899999999999999998543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.92  E-value=9e-24  Score=200.76  Aligned_cols=271  Identities=16%  Similarity=0.150  Sum_probs=182.9

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCC--eEEEeecCCCCC
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGG--LLEITNASFADA  154 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~--~l~i~~~~~~d~  154 (626)
                      +|.+. ..|.+..+.+|++++|.|.+.+.|.+  .+.|+|+|..+....      .++..   .++  .|.|.+++.+|+
T Consensus         4 ~P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~d~   74 (305)
T 2nzi_A            4 APHFK-EELRNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADG------LKYRIQEFKGGYHQLIIASVTDDDA   74 (305)
T ss_dssp             CCEEE-ECCCCEEECTTCCEEEEEEEECSSCC--EEEEEETTEECCCCS------SSEEEEEETTTEEEEEESSCCGGGC
T ss_pred             CCeee-ecccceEEeCCCcEEEEEEEeCCCCC--eEEEEECCEEcccCC------CeEEEEECCCCEEEEEEccCChhhC
Confidence            34444 45778999999999999999998876  569999999987542      22222   233  899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCC--CCc----eEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEe
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGL--PGG----VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV  228 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~--p~~----~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~  228 (626)
                      |.|+|.|.|..|..+..+.|.|..+|..  |..    ..........+.|.|....   .+..  .+.|...+       
T Consensus        75 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p--~i~W~~~~-------  142 (305)
T 2nzi_A           75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG---KPDP--VITWQKGQ-------  142 (305)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEE---ESCC--EEEEEESS-------
T ss_pred             eEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECC---CCCC--EEEEEECC-------
Confidence            9999999999999999999998865532  110    0111223344555554211   0111  12222211       


Q ss_pred             ecceeeee---eeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEE
Q psy12061        229 SEHVIGKE---VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS  305 (626)
Q Consensus       229 ~~~~~~~~---~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~  305 (626)
                       ..+....   .........+.+.+.+.+.+.|.|+|.|.|..|....+... .+.    .++.+|.++.+......++.
T Consensus       143 -~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l-~v~----~~P~~p~~~~~~~~~~~~v~  216 (305)
T 2nzi_A          143 -DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL-DVA----DVPDPPRGVKVSDVSRDSVN  216 (305)
T ss_dssp             -SBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEE-EEE----BCCCCCEEEEEESCCSSCEE
T ss_pred             -EECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEE-EEe----cCCCCCCCceeeeccCCEEE
Confidence             1110000   00001222344433388999999999999999976433221 111    23367888888888889999


Q ss_pred             EEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEE
Q psy12061        306 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI  383 (626)
Q Consensus       306 l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~  383 (626)
                      |+|.++ ..+++.++..|.++++......|.......     ...+.+.+|.+++.|.|+|+|.|..|.+.+|.....
T Consensus       217 l~w~~p-~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~-----~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~  288 (305)
T 2nzi_A          217 LTWTEP-ASDGGSKITNYIVEKCATTAERWLRVGQAR-----ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP  288 (305)
T ss_dssp             EEEECC-SCCSBSCEEEEEEEEEETTSCCEEEEEEES-----SSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCC
T ss_pred             EEEcCC-ccCCCCceeEEEEEEecCCCCccEECcccc-----CceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCC
Confidence            999973 445667899999999988878887654331     346789999999999999999999999988877643

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.92  E-value=1.2e-24  Score=194.66  Aligned_cols=174  Identities=27%  Similarity=0.492  Sum_probs=139.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-----CcEEEccCCcEEE-----ccCCCCCCEEEEEEEEcCCCCc-e
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLI-----SPVSRDDSGIYSCTATNVHGMD-E   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-----~~~~~~~~g~L~i-----~~v~~~d~G~Y~C~a~n~~g~~-~   70 (626)
                      +.+|++++|.|.+.|.|.+.+.|+|+|..+...     .+.....++.+.+     .+++.+|+|.|+|.|.|..|.. .
T Consensus        21 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  100 (212)
T 2v9r_A           21 VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS  100 (212)
T ss_dssp             ECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEEC
T ss_pred             EeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceee
Confidence            578999999999999999999999999998643     2344555665544     5568999999999999998875 4


Q ss_pred             eeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec
Q psy12061         71 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA  149 (626)
Q Consensus        71 ~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  149 (626)
                      ..+.|.|...|..+...+....+..|++++|.|.+ .+.|.|  .+.|++++..+....      .++...++.|.|.++
T Consensus       101 ~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~~l~~~~------~~~~~~~~~L~i~~~  172 (212)
T 2v9r_A          101 HDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP--TISWKKDGSPLDDKD------ERITIRGGKLMITYT  172 (212)
T ss_dssp             CCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC--EEEEEETTEEECTTS------TTEEEETTEEEESSC
T ss_pred             cceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC--EEEEEECCccCCCCc------ceEEccCCeEEEeeC
Confidence            56788887765555556778899999999999998 888876  569999999997543      455667889999999


Q ss_pred             CCCCCEeEEEEEEeCCCceEE-EEEEEEeCCCCCC
Q psy12061        150 SFADAGEYECVVKSTVGKIST-KTTVIVEGPPGLP  183 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~-~~~l~v~~~P~~p  183 (626)
                      +.+|+|.|+|.|.|..|.... .+.|.|..+|...
T Consensus       173 ~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          173 RKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             CHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence            999999999999999998655 4899999887644

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.92  E-value=1.4e-24  Score=210.65  Aligned_cols=168  Identities=22%  Similarity=0.278  Sum_probs=133.5

Q ss_pred             CCCCceEEEEeeeCCCCC-----------CeeEEEeCCE------Ecc---CCCcEEEccCCcEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK-----------PKFVWKKDGN------IIG---SGGRRKIFENGNLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-----------p~i~W~~~~~------~i~---~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++++|.|.+.|.|.           +.|.|+|++.      .+.   ...++ ...+++|.|.+++.+|+|.|+|.
T Consensus        19 v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~   97 (349)
T 4dep_C           19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI-SKEKDVLWFRPTLLNDTGNYTCM   97 (349)
T ss_dssp             EETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCE-EEETTEEEESSCCGGGCEEEEEE
T ss_pred             EecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceE-eecCCEEEEccCChhhCEEEEEE
Confidence            579999999999998765           8999999884      332   22333 34567899999999999999999


Q ss_pred             EEcCCCCceeeEEEEEEeCCceeee---CCCceEEecCCcEEEEEEe-----cccCCcceeEEEeeCCEEeccccCCccC
Q psy12061         62 ATNVHGMDESKGRLIVLHGPSYYEQ---LPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELE  133 (626)
Q Consensus        62 a~n~~g~~~~~~~l~v~~~p~~~~~---~~~~~~v~~g~~~~l~C~~-----~~~p~p~~~i~W~~~~~~~~~~~~~~~~  133 (626)
                      |.|..+.....+.|.|..+|.....   .|....+..|++++|.|.+     .+.|.|  .+.|+||+..+...      
T Consensus        98 a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~--~v~W~k~~~~l~~~------  169 (349)
T 4dep_C           98 LRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP--TITWYMGCYKIQNF------  169 (349)
T ss_dssp             EECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCC--EEEEEETTEECCSC------
T ss_pred             EecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCc--eEEEeeCCEECCCc------
Confidence            9999998888899999886654322   2446688999999999985     666665  56999999988542      


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCC-Cce---EEEEEEEEeCC
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTV-GKI---STKTTVIVEGP  179 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~-g~~---~~~~~l~v~~~  179 (626)
                       .++...+..|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|..+
T Consensus       170 -~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~  218 (349)
T 4dep_C          170 -NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS  218 (349)
T ss_dssp             -SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             -cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence             3455566889999999999999999999987 554   66777777764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.92  E-value=2.5e-25  Score=212.88  Aligned_cols=168  Identities=22%  Similarity=0.291  Sum_probs=127.7

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      +.+|++++|.|.+.+. |.+.|.|+|+|..+..+.++.+..+ .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        18 v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~   97 (317)
T 2y25_A           18 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA   97 (317)
T ss_dssp             EETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHH
T ss_pred             ECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEec
Confidence            5689999999999888 7899999999999987777666533 3799999999999999999999999877776666655


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecc----------cCCcceeEEEeeCCEEeccccCCccCCCeeEecC--CeEEEe
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHT----------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDG--GLLEIT  147 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~----------~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~  147 (626)
                      .|.+... +....+..|+.+.|.|.+.+          .|.+  .+.|+++|..+.....     ......+  ..|.|.
T Consensus        98 ~~~~~~~-~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~--~i~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~  169 (317)
T 2y25_A           98 FKELMME-VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL--KVNWSHNGSAIRYSDR-----VKTGVTGEQIWLQIN  169 (317)
T ss_dssp             HHHHHHH-HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSC--EEEEEESSSBCCCCSS-----EEEEECSSEEEEEEE
T ss_pred             Ccccccc-CCceecccCCCeEEEeeccccEEEEEeccCCCCc--EEEEEECCEECCCCCC-----eEEeccCCEEEEEEC
Confidence            5444332 33455667888888888776          4554  5699999998875421     1122222  349999


Q ss_pred             ecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        148 NASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +++.+|+|.|+|.|.|..|..+..+.|.+.
T Consensus       170 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  199 (317)
T 2y25_A          170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQ  199 (317)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             cCCcccCeeEEEEEEeCCceEEEEEEEeee
Confidence            999999999999999999988888887653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.92  E-value=3e-24  Score=189.11  Aligned_cols=163  Identities=21%  Similarity=0.351  Sum_probs=135.6

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCC--CcEEEc--c--------CCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSG--GRRKIF--E--------NGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~--~~~~~~--~--------~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +.+|++++|.|.+. |.|.+.|.|+|||..+...  .++++.  .        +++|.|.+++.+|+|.|+|.|.|..|.
T Consensus        14 v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   93 (195)
T 2c5d_C           14 GARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT   93 (195)
T ss_dssp             ECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             EecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCc
Confidence            57899999999999 9999999999999999765  233332  2        247999999999999999999998877


Q ss_pred             ceee-EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe
Q psy12061         69 DESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT  147 (626)
Q Consensus        69 ~~~~-~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  147 (626)
                      .... +.|.|..+|.+.. .|....+.+|++++|.|.+.+.|.|. ++.|++++..+.....      .  ...+.|.|.
T Consensus        94 ~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~~~~~~~~~------~--~~~~~L~i~  163 (195)
T 2c5d_C           94 FVSQPGYVGLEGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPV-DLLWLQDAVPLATAPG------H--GPQRSLHVP  163 (195)
T ss_dssp             EECCCEEEEECCSCEEEE-CCCCEEECTTCCEEEEEEEECSSCCC-EEEEEESSCBSSSSTT------S--SCCEEEEEC
T ss_pred             eecccEEEEEecCCeEEc-CCCcEEEcCCCEEEEEeECCCCCCCC-EEEEEECCEeccCCCC------c--CCCCeEEEc
Confidence            5544 8899988886655 56778999999999999999998762 4699999998875431      1  456789999


Q ss_pred             ecCCCCCEeEEEEEEeCCCceE-EEEEEEE
Q psy12061        148 NASFADAGEYECVVKSTVGKIS-TKTTVIV  176 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~~-~~~~l~v  176 (626)
                      +++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       164 ~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          164 GLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            986  89999999999999885 7888888

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=198.62  Aligned_cols=182  Identities=22%  Similarity=0.353  Sum_probs=139.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc----EEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~----~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.+.|.|+|+|..+....+    .....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        27 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V  106 (241)
T 3grw_A           27 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV  106 (241)
T ss_dssp             EETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEE
Confidence            46899999999999999999999999999865432    23344568999999999999999999999998888888888


Q ss_pred             Ee----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee----CCEEeccccCCccCCCe-----eEecCCeE
Q psy12061         78 LH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH----NGVRIGNMDLNELETPN-----INIDGGLL  144 (626)
Q Consensus        78 ~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~----~~~~~~~~~~~~~~~~~-----~~~~~~~l  144 (626)
                      ..    +|.+....+....+..|++++|.|.+.+.|.|  .+.|++    +|..+............     .....+.|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p--~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L  184 (241)
T 3grw_A          107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL  184 (241)
T ss_dssp             ECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC--EEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEE
T ss_pred             eccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC--EEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEE
Confidence            76    34445556778889999999999999999887  569999    78777644211100000     00134579


Q ss_pred             EEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCc
Q psy12061        145 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG  185 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~  185 (626)
                      .|.++..+|+|.|+|.|.|..|..+..+.|.|..+|.+|..
T Consensus       185 ~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~  225 (241)
T 3grw_A          185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE  225 (241)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred             EECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence            99999999999999999999999999999999999887754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.92  E-value=3.9e-24  Score=219.59  Aligned_cols=195  Identities=18%  Similarity=0.195  Sum_probs=154.8

Q ss_pred             CCCCceEEEEeeeCCCCCCe-eEEEeCCEEc--cCCCcEEEc------cCCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-FVWKKDGNII--GSGGRRKIF------ENGNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~i--~~~~~~~~~------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +.+|++++|.|.+.|.|.|. |.|+|++..+  ....+..+.      .+++|.|.+++.+|+|.|+|.|.|..|.....
T Consensus       223 v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~  302 (524)
T 2ec8_A          223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT  302 (524)
T ss_dssp             EETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEE
T ss_pred             EEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEE
Confidence            56899999999999999886 9999999883  333333332      24579999999999999999999999999889


Q ss_pred             EEEEEEeCCceeeeC--CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-------cCCe
Q psy12061         73 GRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-------DGGL  143 (626)
Q Consensus        73 ~~l~v~~~p~~~~~~--~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-------~~~~  143 (626)
                      +.|.|..+|.+...+  +....+.+|++++|.|.+.+.|.|. .+.|+|+|..+....-     .....       ....
T Consensus       303 ~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~-~v~W~k~g~~~~~~~~-----~~~~~~~~~~~~~~~~  376 (524)
T 2ec8_A          303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE-HQQWIYMNRTFTDKWE-----DYPKSENESNIRYVSE  376 (524)
T ss_dssp             EEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC-EEEEESSSCBCSSSBC-----CEESCCSSSCCEEEEE
T ss_pred             EEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc-EEEEEECCeeccCCcc-----ceeEEccCCCceeEEE
Confidence            999999888776543  2478999999999999999999875 3699999998875420     11111       2358


Q ss_pred             EEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCC-------CCceEEEEEeccceEEEEec
Q psy12061        144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL-------PGGVQVVEVHKTSATIQWTD  202 (626)
Q Consensus       144 l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~-------p~~~~~~~~~~~~~~l~W~~  202 (626)
                      |.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|..       ...+.|...+.....+.|..
T Consensus       377 L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~~~~g~l~C~~~g~P~p~i~W~~  442 (524)
T 2ec8_A          377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYF  442 (524)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEECCSSSCEEEEEEEESCCEEECCC
T ss_pred             EEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeecccCcCcEEEEEEEeecCCEEEEEE
Confidence            999999999999999999999999999999999876632       11456655566666777764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.92  E-value=8.1e-24  Score=206.20  Aligned_cols=240  Identities=16%  Similarity=0.186  Sum_probs=162.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEc--------------cCCCcEEEcc------CCcEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------------GSGGRRKIFE------NGNLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i--------------~~~~~~~~~~------~g~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++++|.|.+.|.|.+.|.|+|++..+              ....|+.+..      +.+|.|.+++.+|+|.|+|.
T Consensus         6 ~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   85 (363)
T 1wio_A            6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   85 (363)
T ss_dssp             EETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEE
T ss_pred             EeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEE
Confidence            679999999999999999999999998542              1234555442      44799999999999999999


Q ss_pred             EEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC
Q psy12061         62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG  141 (626)
Q Consensus        62 a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  141 (626)
                      |.|..    ..+.|.|...    ..+| ...+.+|++++|.|.+.+.|.|  .+.|+++|..+.             ...
T Consensus        86 ~~n~~----~~~~l~V~~~----~~~~-~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~-------------~~~  141 (363)
T 1wio_A           86 VEDQK----EEVQLLVFGL----TANS-DTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGKNI-------------QGG  141 (363)
T ss_dssp             ETTEE----EEEEEEEEEE----EESS-CSSEESBSCEEEEEECCTTCCC--CEEEECSSSCEE-------------EES
T ss_pred             EEECC----CcEEEEEEeC----CCCC-ceEEecCCCEEEEEEcCCCCCC--eEEEEcCCCccc-------------ccc
Confidence            98873    3677777652    2223 2467899999999999998776  568999975542             256


Q ss_pred             CeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCC-C-CcccEEEEEEee
Q psy12061        142 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN-G-RPITHYKIIART  219 (626)
Q Consensus       142 ~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~-~-~~~~~y~v~~~~  219 (626)
                      ..|.|.+++.+|+|.|+|.|.|..+..+..+.|.|..+|..|..+  .......+.|.|...... + .|  .-.+.|..
T Consensus       142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~G~~v~l~C~~~~~~~~~~P--~p~i~W~~  217 (363)
T 1wio_A          142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIV--YKKEGEQVEFSFPLAFTVEKLTG--SGELWWQA  217 (363)
T ss_dssp             SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEE--EEETBCCEEEECCCCCCCCSSCE--EEEEEEEE
T ss_pred             eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCce--EEecCCEEEEEEEEecccccCCC--ceeEEEec
Confidence            799999999999999999999998888888888888777766322  223355666766532110 0 11  22333333


Q ss_pred             cCCCC---ceEe---ecceeeeeee-------ccCCceeEEEEeeccCCceEEEEEEEecC--Ccc
Q psy12061        220 NWNST---WFNV---SEHVIGKEVD-------RYTGRKEASIENVLVPWSTYEFKVIAGNE--LGY  270 (626)
Q Consensus       220 ~~~~~---w~~~---~~~~~~~~~~-------~~~~~~~~~i~~~l~~~~~y~~~v~a~n~--~g~  270 (626)
                      ++...   +...   ..........       ...+...+.+.+ +...+.+.|+|.|.|.  .|.
T Consensus       218 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~~~g~  282 (363)
T 1wio_A          218 ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ-ALPQYAGSGNLTLALEAKTGK  282 (363)
T ss_dssp             SSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESS-BCGGGCEEEEEEECBTTTTCC
T ss_pred             CCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEcc-CCcCcCcEEEEEEEEhhhcCe
Confidence            32210   0000   0000000000       001123556655 8899999999999999  773

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.92  E-value=6.3e-24  Score=184.80  Aligned_cols=162  Identities=23%  Similarity=0.377  Sum_probs=135.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC-----CcEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATNVHGM-DESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l   75 (626)
                      +.+|++++|.|.+.|.|.+.+.|+|++..+....+..+..+     ++|.|.+++.+|+|.|+|.|.|..|. ....+.|
T Consensus        14 v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   93 (182)
T 1rhf_A           14 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL   93 (182)
T ss_dssp             EETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEE
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEE
Confidence            56899999999999999999999999999987766655443     47999999999999999999998776 4457899


Q ss_pred             EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         76 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        76 ~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      .|..+|.+.. .+....+..|++++|.|.+.+.|.| +.+.|++++..+....          .....|.|.++  +|+|
T Consensus        94 ~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p-~~v~W~~~~~~~~~~~----------~~~~~L~i~~~--~d~G  159 (182)
T 1rhf_A           94 TVEGVPFFTV-EPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPA----------PSPSVLNVTGV--TQST  159 (182)
T ss_dssp             EEECSCEEEE-CCCCEEECTTCCEEEEEEEECSSSC-CEEEEEETTEECSCSE----------ESSEEEEECCC--SSCE
T ss_pred             EEecCCeEEe-cCcceEecCCCEEEEEeEecCCCCC-CEEEEEcCCeECCCCC----------CCceEEEEecc--ccCe
Confidence            9988887665 4677899999999999999999876 2569999999986431          15678999998  5899


Q ss_pred             eEEEEEEeCCCceE-EEEEEEEe
Q psy12061        156 EYECVVKSTVGKIS-TKTTVIVE  177 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~-~~~~l~v~  177 (626)
                      .|+|.|.|..|... ..+.|.|+
T Consensus       160 ~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          160 MFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEECCCCCcccceEEEEeC
Confidence            99999999999875 47777763

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.92  E-value=2.4e-24  Score=209.89  Aligned_cols=220  Identities=13%  Similarity=0.101  Sum_probs=165.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+       ...+++|.|.+++.+|+|.|+|.|.|..+.....+.|.|...|
T Consensus       108 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p  180 (363)
T 1wio_A          108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  180 (363)
T ss_dssp             EESBSCEEEEEECCTTCCCCEEEECSSSCE-------EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCS
T ss_pred             EecCCCEEEEEEcCCCCCCeEEEEcCCCcc-------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCC
Confidence            568999999999999999999999997543       2356789999999999999999999987777777788887655


Q ss_pred             ceeeeCCCceEEecCCcEEEEEEecc-----cCCcceeEEEeeCCEEeccccCCc-cCCCeeEe------------c--C
Q psy12061         82 SYYEQLPPKITIAAHRNLQLRCSAHT-----EELLDVAYIWTHNGVRIGNMDLNE-LETPNINI------------D--G  141 (626)
Q Consensus        82 ~~~~~~~~~~~v~~g~~~~l~C~~~~-----~p~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~------------~--~  141 (626)
                      ..    +....+.+|++++|.|.+.+     .|.  ..+.|+++|..+....... ....++..            .  .
T Consensus       181 ~~----~~~~~~~~G~~v~l~C~~~~~~~~~~P~--p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (363)
T 1wio_A          181 KA----SSIVYKKEGEQVEFSFPLAFTVEKLTGS--GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP  254 (363)
T ss_dssp             CS----EEEEEEETBCCEEEECCCCCCCCSSCEE--EEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSS
T ss_pred             CC----CCceEEecCCEEEEEEEEecccccCCCc--eeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCc
Confidence            43    35677889999999999887     444  4679999998876520000 00122222            2  3


Q ss_pred             CeEEEeecCCCCCEeEEEEEEeC--CCceEEEEEEEEeCCCCCCCceEEEEEeccce--EEEEecCCCCCCcccEEEEEE
Q psy12061        142 GLLEITNASFADAGEYECVVKST--VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA--TIQWTDGATNGRPITHYKIIA  217 (626)
Q Consensus       142 ~~l~i~~~~~~d~g~Y~C~a~n~--~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~--~l~W~~~~~~~~~~~~y~v~~  217 (626)
                      ..|.|.+++.+|+|.|+|.|.|.  .|..+..+.|.|...++.+..+.|...+....  .+.|...   +..+..     
T Consensus       255 ~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~---~~~~~~-----  326 (363)
T 1wio_A          255 LHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLE---NKEAKV-----  326 (363)
T ss_dssp             CEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEEEESSCCTTCCEEEECS---SSSCSE-----
T ss_pred             eEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEEEccccCCCccEEEEeC---CCceee-----
Confidence            48999999999999999999999  99999999999987777777888866554433  3788743   222211     


Q ss_pred             eecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCC
Q psy12061        218 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL  268 (626)
Q Consensus       218 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~  268 (626)
                                               ...+.+.+ +.+.+.+.|+|.|.|..
T Consensus       327 -------------------------~~~l~i~~-v~~~d~G~Y~C~a~~~~  351 (363)
T 1wio_A          327 -------------------------SKREKAVW-VLNPEAGMWQCLLSDSG  351 (363)
T ss_dssp             -------------------------EESSSEEE-ESSCCSEEEEEEECSSS
T ss_pred             -------------------------eeeeeeee-eccccceeEEEEEecCC
Confidence                                     01223444 88999999999999754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.92  E-value=2.3e-24  Score=189.81  Aligned_cols=176  Identities=16%  Similarity=0.157  Sum_probs=131.3

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCC-EEccCCCcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~-~~i~~~~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      .+|++++|.|.+.|.|.|.|.|+|+. .++  .++.... .+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        14 ~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~   91 (202)
T 1vca_A           14 QIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSF   91 (202)
T ss_dssp             ETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             cCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeC
Confidence            48999999999999999999999943 222  1222222 2346999999999999999999999888778889999888


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCC-cceeEEEeeCCEEeccccCCccCCCe-eEecCCeEEEeecCCCCCEeEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELETPN-INIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      |..+...+. ..+.+|++++|.|.+.+.++ +.++|.|+|++..+............ .......|.|..+...|.|.|+
T Consensus        92 p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~yt  170 (202)
T 1vca_A           92 PKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV  170 (202)
T ss_dssp             CSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEE
T ss_pred             CCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEE
Confidence            766544444 67899999999999998644 34678999999988653211100000 0112345678888888999999


Q ss_pred             EEEEeCCCc-------eEEEEEEEEeCCCC
Q psy12061        159 CVVKSTVGK-------ISTKTTVIVEGPPG  181 (626)
Q Consensus       159 C~a~n~~g~-------~~~~~~l~v~~~P~  181 (626)
                      |.|.|..|.       .+.+..|.|..+|.
T Consensus       171 C~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          171 CRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            999998875       35678888888874

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.92  E-value=2.8e-24  Score=216.28  Aligned_cols=233  Identities=13%  Similarity=0.064  Sum_probs=157.6

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce--------
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE--------   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~--------   70 (626)
                      +.+|++++|.|.+.|.|+|   .|.|+|||.+|....+.....+++|.|.+++.+|+|.|+|.|.|..|...        
T Consensus        98 v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s  177 (450)
T 1z7z_I           98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS  177 (450)
T ss_dssp             ECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEEC
T ss_pred             EeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeecc
Confidence            5689999999999999888   99999999998644322222235799999999999999999999987543        


Q ss_pred             eeEEEEEEeCCceeeeCCCc---eEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEE
Q psy12061         71 SKGRLIVLHGPSYYEQLPPK---ITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI  146 (626)
Q Consensus        71 ~~~~l~v~~~p~~~~~~~~~---~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  146 (626)
                      ....|.|...|..   +|..   ..+.+|++++|.|.+.+. |.+.+.+.|+++|..+..         ++......+.+
T Consensus       178 ~~~~l~v~~~~~~---~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~---------~~~~~~~~~~~  245 (450)
T 1z7z_I          178 APYQLQTFVLPAT---PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---------TVTYGNDSFSA  245 (450)
T ss_dssp             CCEECEECCCCSS---CCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC---------EEEEETTEEEE
T ss_pred             CccceeeeccCCC---CCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc---------eEEecCCceeE
Confidence            3345555433211   2322   688999999999999998 644568899999998864         22223333333


Q ss_pred             e---ecCCCCCE--eEEEEEEeCCCceEEEEEEEEeCCCCCCCceE-EEEEeccceEEEEecCCCCCCcccEEEEEEeec
Q psy12061        147 T---NASFADAG--EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTN  220 (626)
Q Consensus       147 ~---~~~~~d~g--~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~  220 (626)
                      .   +++.+|+|  .|+|.|.|..|..+..+.|.|...|.+...+. ........+.|.|...   ..            
T Consensus       246 ~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~---p~------------  310 (450)
T 1z7z_I          246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH---PR------------  310 (450)
T ss_dssp             EEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC------------------
T ss_pred             EEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecC---CC------------
Confidence            3   77999999  99999999999999999999998665211000 0223455677777643   11            


Q ss_pred             CCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCc
Q psy12061        221 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG  269 (626)
Q Consensus       221 ~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g  269 (626)
                      ....|  .+..+..     ......+.+.. +...+.+.|+|.|.|..|
T Consensus       311 p~i~W--~g~~~~~-----~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~~  351 (450)
T 1z7z_I          311 AKVTL--NGVPAQP-----LGPRAQLLLKA-TPEDNGRSFSCSATLEVA  351 (450)
T ss_dssp             --------------------CCCCCEEEEC-CGGGTTCEEEEEEEEEET
T ss_pred             CEeEE--CCEEcCC-----CCceEEEEEec-CcccCCceEEEEEEcCCC
Confidence            12234  1111100     01222556655 899999999999997654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.92  E-value=1.1e-23  Score=197.90  Aligned_cols=168  Identities=21%  Similarity=0.350  Sum_probs=143.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+.++|.|.+.|.|.|.+.|+|++..+....++.+..   .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       111 v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  190 (284)
T 2rik_A          111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK  190 (284)
T ss_dssp             EETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe
Confidence            4689999999999999999999999999998776665533   2369999999999999999999999998889999998


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec--CCeEEEeecCCCCCEe
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID--GGLLEITNASFADAGE  156 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~  156 (626)
                      .+|.+.. .|....+..|++++|.|.+.+.|.|  ++.|+++|..+.....     ..+...  ...|.|.+++.+|+|.
T Consensus       191 ~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~  262 (284)
T 2rik_A          191 EPPVFRK-KPHPVETLKGADVHLECELQGTPPF--QVSWHKDKRELRSGKK-----YKIMSENFLTSIHILNVDSADIGE  262 (284)
T ss_dssp             CCCBCCS-CCCCEEECTTCCEEEEEECBSSSCC--EEEEEETTEEECBTTT-----EEEEEETTEEEEEECSCCGGGCEE
T ss_pred             cCCccee-CCCcceecCCCeEEEEEEEEecCCC--EEEEEECCEECcCCCC-----EEEEEcCCEEEEEEcCCCcccCEE
Confidence            8887665 4677889999999999999999876  5699999999876421     112222  2589999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEe
Q psy12061        157 YECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      |+|.|.|..|..+..+.|.|+
T Consensus       263 Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          263 YQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCceeEEEEEEEc
Confidence            999999999999999998875

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.92  E-value=7e-24  Score=203.45  Aligned_cols=166  Identities=16%  Similarity=0.203  Sum_probs=121.0

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEcc---------CCCcEEEcc--------CCcEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIG---------SGGRRKIFE--------NGNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~---------~~~~~~~~~--------~g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      |.+|++++|.|.+.|. |.|.|.|+|++.++.         ...|+.+..        +++|.|.+++.+|+|.|+|.|.
T Consensus        15 v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   94 (327)
T 2wng_A           15 VAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKF   94 (327)
T ss_dssp             EETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEE
T ss_pred             EecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEee
Confidence            5789999999999998 889999999876431         123555532        3479999999999999999999


Q ss_pred             cCCCCc-----eeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc--CCCe
Q psy12061         64 NVHGMD-----ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPN  136 (626)
Q Consensus        64 n~~g~~-----~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~--~~~~  136 (626)
                      |..+..     ...+.|.|..+|......+....+.+|++++|.|.+.+.|+|.+.+.|++||..+........  ....
T Consensus        95 n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~  174 (327)
T 2wng_A           95 RKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESV  174 (327)
T ss_dssp             ESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCS
T ss_pred             cCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCC
Confidence            987642     234688887765432222234678899999999999998877567899999999875421000  0001


Q ss_pred             eEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        137 INIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       137 ~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .....+.|.|......|.|.|+|.|.|..|.
T Consensus       175 ~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          175 SYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             CEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             ceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            1112235778777777789999999998876

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.92  E-value=9e-25  Score=210.99  Aligned_cols=170  Identities=19%  Similarity=0.330  Sum_probs=136.0

Q ss_pred             CCCCceEEEEeeeC-------CCCCCeeEEEeCCEEc--cCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNPE-------AAPKPKFVWKKDGNII--GSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-------g~p~p~i~W~~~~~~i--~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      |.+|++++|.|.+.       +.|.+.|.|+|+|..+  ...  .|+. ..+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus        30 v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~  108 (339)
T 3o4o_C           30 RLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-AQDGALWLLPALQEDSGTYVCTTRNASYCDK  108 (339)
T ss_dssp             EETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE-EETTEEEESSBCTTCCEEEECCEEETTEEEE
T ss_pred             EECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE-eeCCeEEECCCCcccCEEEEEEEECCcceEE
Confidence            67999999999998       8899999999999884  332  2433 5678999999999999999999999999888


Q ss_pred             eeEEEEEEeCCcee-eeCCCceEEecCCcEEEEEE-----ecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCC
Q psy12061         71 SKGRLIVLHGPSYY-EQLPPKITIAAHRNLQLRCS-----AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGG  142 (626)
Q Consensus        71 ~~~~l~v~~~p~~~-~~~~~~~~v~~g~~~~l~C~-----~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~  142 (626)
                      ..+.|.|...|... ........+..|++++|.|.     +.+.|.+  .+.|+|+|..+....      .++..  ..+
T Consensus       109 ~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~--~v~W~k~g~~~~~~~------~~~~~~~~~~  180 (339)
T 3o4o_C          109 MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV--KIQWYKDSLLLDKDN------EKFLSVRGTT  180 (339)
T ss_dssp             EEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC--CBCCEESSCBCCTTC------SSEEECTTSS
T ss_pred             EEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc--eEEEecCCeeCCCCC------ceeEEcCCcc
Confidence            88999998866542 11223457899999999999     7777776  458999999886542      33333  235


Q ss_pred             eEEEeecCCCCCEeEEEEEEeCCC----ceEEEEEEEEeCCC
Q psy12061        143 LLEITNASFADAGEYECVVKSTVG----KISTKTTVIVEGPP  180 (626)
Q Consensus       143 ~l~i~~~~~~d~g~Y~C~a~n~~g----~~~~~~~l~v~~~P  180 (626)
                      .|.|.+++.+|+|.|+|.|.|..|    ..+..+.|.|...+
T Consensus       181 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~  222 (339)
T 3o4o_C          181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK  222 (339)
T ss_dssp             EEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC
T ss_pred             eEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC
Confidence            899999999999999999999887    45677888887543

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.91  E-value=2.7e-23  Score=200.97  Aligned_cols=309  Identities=14%  Similarity=0.069  Sum_probs=168.1

Q ss_pred             CEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEe-ccceEEEEecCCC-C--CCcccEEEEEEeecCCCCceEee
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVH-KTSATIQWTDGAT-N--GRPITHYKIIARTNWNSTWFNVS  229 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~-~~~~~l~W~~~~~-~--~~~~~~y~v~~~~~~~~~w~~~~  229 (626)
                      .+.++..+.|..|......   ....|.||.++.+...+ .+++.|+|+++.+ +  +.....|.|+++..+...|....
T Consensus         9 ~~~~~~~~~~~~~~~~~~~---~~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~~~   85 (380)
T 3lb6_C            9 GCLYTFLISTTFGCTSSSD---TEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTII   85 (380)
T ss_dssp             -------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEEEE
T ss_pred             hhhhhheeecccccccCCc---ccccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceEEE
Confidence            3445555666666432111   12258899999998666 6889999999865 2  24588999999998877898764


Q ss_pred             cceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecC----CccCCCCCCCCccc--CCCCCCCCCCceeEeecCCcCe
Q psy12061        230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNE----LGYGEPSSPSPQYN--TPADKPYQAPSRIGGGGGKIGD  303 (626)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~----~g~~~~s~~~~~~~--~~~~~p~~~p~~~~~~~~~~~~  303 (626)
                      ..          .  ...... +..+..|.|||+|.|.    .|.+.++..+....  +....|+.+|.++.........
T Consensus        86 ~~----------~--~~~~~~-~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~  152 (380)
T 3lb6_C           86 TK----------N--LHYKDG-FDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQY  152 (380)
T ss_dssp             ES----------S--SEEEEE-CCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTE
T ss_pred             ec----------c--EEEEEe-ecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcE
Confidence            42          1  112222 6669999999999976    67776665443332  3446777899999998888899


Q ss_pred             EEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeC--CCcceeEEEEEEEEecCCCCCCCCccE
Q psy12061        304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP--SEFYYTEYEVKVQAINDVGPGPESEVV  381 (626)
Q Consensus       304 v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~p~~~Y~~~v~a~n~~g~~~~s~~~  381 (626)
                      +.++|++..  .. +....|.|.|+..+...+...............+.+.  ++.+.+.|.|+|.|.|..|.+. +...
T Consensus       153 l~csW~p~~--~~-~~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~-s~~~  228 (380)
T 3lb6_C          153 LLCSWKPGI--GV-LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIR-SSYF  228 (380)
T ss_dssp             EEEEEECC---------CCEEEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CC-CEEE
T ss_pred             EEEEEcCCC--CC-CCCccEEEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeec-cccE
Confidence            999999832  22 4567899999976644443322111111122234444  5678899999999999888765 3445


Q ss_pred             EEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeC-Cc
Q psy12061        382 TIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVG-LQ  460 (626)
Q Consensus       382 ~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~  460 (626)
                      .+.+...+++.+|.++++...+.+++.|+|++|....   .+.+.+|.|+|+..+ ..+.....   .  .++.+.+ |+
T Consensus       229 ~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~P~~~~---~~~~l~Yev~y~~~~-~~w~~~~~---~--~~~~l~~~L~  299 (380)
T 3lb6_C          229 TFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPI---PARCFDYEIEIREDD-TTLVTATV---E--NETYTLKTTN  299 (380)
T ss_dssp             EECGGGSCCCCCCEEEEEC-------CEEEECCSSSC---CSTTEEEEECC---------CCEE---S--SSCC------
T ss_pred             EEcHHHcccCCCCceEEEEEcCCCeEEEEECCCCCCC---CcceEEEEEEEEeCC-CCceEecc---c--ceEEEeCccC
Confidence            6666665666699999998877889999999886431   135789999998853 22222111   1  2367888 99


Q ss_pred             cCceEEEEEEEeeC-----CC-CCCCCccEEEeecCC
Q psy12061        461 PDTKYYVKVMAYNN-----AG-EGPESERYLERTYRK  491 (626)
Q Consensus       461 p~t~Y~v~V~a~~~-----~g-~s~~s~~~~~~t~~~  491 (626)
                      |++.|.|+|+|...     .| .|++|....+.|.++
T Consensus       300 p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~t~~~  336 (380)
T 3lb6_C          300 ETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDL  336 (380)
T ss_dssp             ------CCEEEEECTTTCSSCCCCCCCCC--------
T ss_pred             CCcEEEEEEEEEEcccCCCCCCCCCCCCCEEEeCCCC
Confidence            99999999999953     23 267788888877644

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.91  E-value=9.2e-24  Score=209.58  Aligned_cols=170  Identities=23%  Similarity=0.360  Sum_probs=148.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|.|.|.+.|+|+|..+....+.....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus       234 ~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  313 (404)
T 3p3y_A          234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP  313 (404)
T ss_dssp             EETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEE
T ss_pred             EecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCC
Confidence            45899999999999999999999999999987666555567789999999999999999999999998889999998888


Q ss_pred             ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEE
Q psy12061         82 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        82 ~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      .+.. .+.+..+.+|++++|.|.+.+.|.|  .+.|+++|..+.....    ..+....++.|.|.+++.+|+|.|+|.|
T Consensus       314 ~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  386 (404)
T 3p3y_A          314 YWLD-EPKNLILAPGEDGRLVCRANGNPKP--TVQWMVNGEPLQSAPP----NPNREVAGDTIIFRDTQISSRAVYQCNT  386 (404)
T ss_dssp             EEEE-CCCCEEECTTCCEEEECEEEEESCC--EEEEEETTEEGGGSCC----CTTEEEETTEEEESSCCSSCCCEEEEEE
T ss_pred             eeec-cCCcceeecCCcEEEEEEccccCCC--ceEEEECCEecCCCCC----CceEEecCCEEEEeecCHHHCEEEEEEE
Confidence            7665 5778899999999999999999877  4699999999876421    2344556789999999999999999999


Q ss_pred             EeCCCceEEEEEEEEeC
Q psy12061        162 KSTVGKISTKTTVIVEG  178 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~~  178 (626)
                      .|..|..+..+.|.|.+
T Consensus       387 ~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          387 SNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EETTEEEEEEEEEEEC-
T ss_pred             EeCCCcEEEEEEEEEEe
Confidence            99999999999998764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.91  E-value=1.2e-23  Score=184.65  Aligned_cols=167  Identities=17%  Similarity=0.311  Sum_probs=135.3

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEe-CCEEcc-CCCcEEEcc----CCcEEEccCCCCCCEEEEEEEEcCCC-CceeeE
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKK-DGNIIG-SGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHG-MDESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~-~~~~i~-~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~   73 (626)
                      +.+|++++|.|.+.+.| .+.+.|+| ||..+. ...++.+..    +++|.|.+++.+|+|.|+|.|.|..| .....+
T Consensus        14 v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   93 (191)
T 1epf_A           14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV   93 (191)
T ss_dssp             EETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEE
T ss_pred             EcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEE
Confidence            56899999999999987 78999999 998887 456666643    35799999999999999999999984 455667


Q ss_pred             EEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCC
Q psy12061         74 RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFA  152 (626)
Q Consensus        74 ~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~  152 (626)
                      .|.|..+|.+.. .|....+..|++++|.|.+.+.|.|.  +.|++++..+....     ..++. ..++.|.|.+++.+
T Consensus        94 ~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~  165 (191)
T 1epf_A           94 NVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKK-----DVRFIVLSNNYLQIRGIKKT  165 (191)
T ss_dssp             EEEEECCSEEEE-CCSSEECCTTSCEEECCEEECSSCCE--EEEEETTEEGGGGC-----CTTEEECTTSCEEETTCCGG
T ss_pred             EEEeecCceEec-CCCcEeecCCCeEEEEEEECCCCCCE--EEEEECCEEeeccC-----CceEEEecCCeEEECCCChh
Confidence            888877776654 56788899999999999999998874  69999999986432     12333 35668999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      |+|.|+|.|.|..|.......+.|
T Consensus       166 d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          166 DEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             GCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             hCEEEEEEEEEecceeEEEEEEEE
Confidence            999999999999876555555544

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.91  E-value=2.4e-24  Score=185.08  Aligned_cols=153  Identities=17%  Similarity=0.236  Sum_probs=122.1

Q ss_pred             CCCCceEEEEeeeCC--CCCCeeEEEeCCEEcc----------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEA--APKPKFVWKKDGNIIG----------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g--~p~p~i~W~~~~~~i~----------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|...+  .|.|.|.|+|++..|.          .++|+.+..+|+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         8 ~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~   87 (176)
T 1hng_A            8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR   87 (176)
T ss_dssp             EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred             EEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCE
Confidence            578999999996533  5677999999997652          4678889889999999999999999999999999986


Q ss_pred             --eeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe
Q psy12061         70 --ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT  147 (626)
Q Consensus        70 --~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  147 (626)
                        ...+.|.|..++..      ......+.+++|.|.+.+.|.|  +|.|+++|..+....              .+.|.
T Consensus        88 ~~~~~~~l~V~~~~~~------p~i~~~~~~v~L~C~~~g~p~p--~i~W~~~g~~l~~~~--------------~~~i~  145 (176)
T 1hng_A           88 ILNKALDLRILEMVSK------PMIYWECSNATLTCEVLEGTDV--ELKLYQGKEHLRSLR--------------QKTMS  145 (176)
T ss_dssp             EEEEEEEEEEECCCCC------CEEEEETTTTEEEEECSSCSSC--EEEEEETTEEEEEES--------------SSEEE
T ss_pred             EEEEEEEEEEeCCCCC------CEEEecCCcEEEEEEecCCCCc--EEEEEECCEECCCCC--------------cEEEE
Confidence              55678888664321      1122345679999999999876  569999999886531              25566


Q ss_pred             ecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        148 NASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      ++..+|+|.|+|.|.|..|..++.+.|.+
T Consensus       146 ~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          146 YQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEccCCeEEEEEEEecCCCceecccccC
Confidence            88899999999999999999888776654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.91  E-value=9.3e-24  Score=208.80  Aligned_cols=165  Identities=22%  Similarity=0.379  Sum_probs=141.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEc--cCC-cEEEccCCCCCCEEEEEEEEcCCCCcee-eEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIF--ENG-NLLISPVSRDDSGIYSCTATNVHGMDES-KGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~--~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l   75 (626)
                      +.+|+.++|.|.+.|.|.|.|.|+|+|..+...  .++...  .++ +|.|.+++.+|+|.|+|.|.|..|.... .+.|
T Consensus       224 ~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  303 (395)
T 1bih_A          224 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL  303 (395)
T ss_dssp             EETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEE
T ss_pred             EECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEE
Confidence            468999999999999999999999999998754  333322  123 6999999999999999999999999766 8899


Q ss_pred             EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         76 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        76 ~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      .|..+|.+...+.....+..|++++|.|.+.+.|.|.  +.|+++|..+..        .++...++.|.|.+++.+|+|
T Consensus       304 ~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~--------~~~~~~~~~L~i~~~~~~d~G  373 (395)
T 1bih_A          304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLSG--------GRATVTDSGLVIKGVKNGDKG  373 (395)
T ss_dssp             EEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCC--CEEEETTEECCS--------SSEEEETTEEEESSCCSTTCE
T ss_pred             EEEcCCccccCCCcceEecCCCeEEEEEEECcccCCe--eEEEECCEECCC--------CceEEECCEEEEeeCCcccCE
Confidence            9998888776544448899999999999999998875  589999999864        355566779999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEE
Q psy12061        156 EYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      .|+|.|.|..|..+..+.|.|
T Consensus       374 ~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          374 YYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEccCCCceEEEEEEE
Confidence            999999999999999988876

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.91  E-value=4.5e-24  Score=210.43  Aligned_cols=246  Identities=17%  Similarity=0.231  Sum_probs=170.6

Q ss_pred             CCCCceEEEEeeeCCCCC---CeeEEEeCCEEccC-----CCcEEEccCCcEEEccCCCCCC-EEEEEEEEcCCCCcee-
Q psy12061          2 AGEGGNVTIFCNPEAAPK---PKFVWKKDGNIIGS-----GGRRKIFENGNLLISPVSRDDS-GIYSCTATNVHGMDES-   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~---p~i~W~~~~~~i~~-----~~~~~~~~~g~L~i~~v~~~d~-G~Y~C~a~n~~g~~~~-   71 (626)
                      +.+|++++|.|.+.+.|.   +.|.|+|++..+..     +.|+.+..+++|.|.+++.+|+ |.|+|.|.|..+.... 
T Consensus       115 v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~  194 (388)
T 2v5m_A          115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL  194 (388)
T ss_dssp             EETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEE
T ss_pred             eecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceee
Confidence            568999999999988753   79999999887632     5688888889999999999999 9999999998654322 


Q ss_pred             e---EEEEEEeC-----CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCe
Q psy12061         72 K---GRLIVLHG-----PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL  143 (626)
Q Consensus        72 ~---~~l~v~~~-----p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (626)
                      .   ..|.|..+     |.+.........+.+|++++|.|.+.+.|.|  .+.|+|++..+.... ......++...++.
T Consensus       195 ~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~  271 (388)
T 2v5m_A          195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP--SFRWYKFIEGTTRKQ-AVVLNDRVKQVSGT  271 (388)
T ss_dssp             CSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCC--EEEEEEECTTSSCEE-ECCCSSSEEEETTE
T ss_pred             ccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCC--EEEEEecCCCCcccc-cccccCceecccCE
Confidence            1   35666554     3222223345678899999999999998877  468999854332110 00112345556789


Q ss_pred             EEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCce-EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCC
Q psy12061        144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN  222 (626)
Q Consensus       144 l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~-~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~  222 (626)
                      |.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.....+ .........+.|.|..             ...+...
T Consensus       272 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~-------------~g~p~p~  338 (388)
T 2v5m_A          272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY-------------TGNPIKT  338 (388)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEE-------------EEECCCE
T ss_pred             EEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEe-------------ccccCCe
Confidence            9999999999999999999999999999999998765421100 1112233455555553             2222222


Q ss_pred             CCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        223 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       223 ~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ..|.+.+..+.       .....+.|.+ +...+.+.|+|.|.|..|..
T Consensus       339 i~W~~~g~~i~-------~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~  379 (388)
T 2v5m_A          339 VSWMKDGKAIG-------HSESVLRIES-VKKEDKGMYQCFVRNDRESA  379 (388)
T ss_dssp             EEEEETTEECS-------CCSSEEEESS-CCGGGCEEEEEEEECSSCEE
T ss_pred             EEEEECCEECc-------cCCCEEEEec-CChhhCEEEEEEEEcCCCcE
Confidence            33444333221       1223556655 89999999999999999854

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=187.76  Aligned_cols=159  Identities=21%  Similarity=0.353  Sum_probs=133.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc-eeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|.|.+.|.|+|++..+...      .+++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|...
T Consensus        30 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~  103 (218)
T 3k0w_A           30 VLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI  103 (218)
T ss_dssp             EETTSBEEEECEETTTTSSEEEEEETTEECTTC------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECC
T ss_pred             EeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEcc
Confidence            568999999999999999999999999998654      24679999999999999999999998865 45578888765


Q ss_pred             C--------------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEE
Q psy12061         81 P--------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI  146 (626)
Q Consensus        81 p--------------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  146 (626)
                      |              ..+...|....+..|++++|.|.+.+.|.|  .+.|++++..+...            ....|.|
T Consensus       104 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~--~v~W~~~~~~~~~~------------~~~~L~i  169 (218)
T 3k0w_A          104 PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHE------------TKKLYMV  169 (218)
T ss_dssp             CGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC--EEEEEETTEECTTC------------CSSEEEE
T ss_pred             CcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC--eEEEEECCEECCCC------------CCCEEEE
Confidence            3              233445777899999999999999998876  56999999998653            2458999


Q ss_pred             eecCCCCCEeEEEEEEeCCCc-eEEEEEEEEeCCC
Q psy12061        147 TNASFADAGEYECVVKSTVGK-ISTKTTVIVEGPP  180 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~P  180 (626)
                      .+++.+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus       170 ~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          170 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN  204 (218)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred             eecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence            999999999999999998887 5677888887643

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=8.3e-24  Score=189.91  Aligned_cols=176  Identities=23%  Similarity=0.439  Sum_probs=136.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC---CcEEEccCCcE----EEccCCCCCCEEEEEEEEcCCCCce-eeE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNL----LISPVSRDDSGIYSCTATNVHGMDE-SKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~---~~~~~~~~g~L----~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~   73 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+...   .......++.+    .|.+++.+|+|.|+|.|.|..|... ..+
T Consensus        21 v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~  100 (217)
T 2vr9_A           21 VKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHA  100 (217)
T ss_dssp             ECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCE
T ss_pred             EeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccc
Confidence            578999999999999999999999999998753   23334455554    6888999999999999999988763 357


Q ss_pred             EEEEEeCCceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCc-cCCCeeE-ecCCeEEEeecC
Q psy12061         74 RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNE-LETPNIN-IDGGLLEITNAS  150 (626)
Q Consensus        74 ~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~  150 (626)
                      .|.|...|..+...+....+..|++++|.|.+ .+.|.|  .+.|+++|..+....... ....+.. ..++.|.|.+++
T Consensus       101 ~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  178 (217)
T 2vr9_A          101 SLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP--TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE  178 (217)
T ss_dssp             EEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC--EEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCC
T ss_pred             eEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC--eEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCC
Confidence            77776644444445778889999999999999 888876  469999999987432111 0112332 366799999999


Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      .+|+|.|+|.|.|..|....+..+.+...
T Consensus       179 ~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          179 PIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             STTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             HHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            99999999999999999877766655543

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.91  E-value=4.6e-23  Score=181.95  Aligned_cols=186  Identities=21%  Similarity=0.337  Sum_probs=146.6

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      .|. +|.++++...+.+++.|+|+++...+   +..+.+|.|+|+..+...+....  .......+.+.+|.|++.|.|+
T Consensus         5 ~P~-~P~~l~~~~~~~~sv~l~W~~p~~~~---~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~~~L~p~t~Y~~~   78 (197)
T 3lpw_A            5 TPG-PPQDLKVKEVTKTSVTLTWDPPLLDG---GSKIKNYIVEKRESTRKAYSTVA--TNCHKTSWKVDQLQEGCSYYFR   78 (197)
T ss_dssp             SCC-CCEEEEEEEECSSCEEEEEECCSCCT---TSCCCEEEEEEEETTCSSCEEEE--EEECSSEEEECCCCTTCEEEEE
T ss_pred             CCC-CCCCcEEEEecCCEEEEEEcCCccCC---CCcccEEEEEEEECCCCccEEee--cCCCccEEEEcCCCCCCEEEEE
Confidence            454 88999999999999999999985332   13488999999876654443322  2345567999999999999999


Q ss_pred             EEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCC-CceeeEEEEEEEeccCCcccccee
Q psy12061        469 VMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTI  547 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~-~~i~~Y~i~~~~~~~~~~~~~~~~  547 (626)
                      |+|.|..|.+.++....+.+....|. +|.++.+...+.+++.|+|++  |...+ +.+.+|.|+|+..+...    ...
T Consensus        79 V~a~~~~g~~~~s~~~~~~t~~~~p~-~p~~~~~~~~~~~~v~l~W~~--p~~~~~~~i~~Y~v~~~~~~~~~----~~~  151 (197)
T 3lpw_A           79 VLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEK--PEHDGGSRILGYIVEMQTKGSDK----WAT  151 (197)
T ss_dssp             EEEEETTEECCCEECSSCEESCCCCC-CCSCEEEEEECSSCEEEEECC--CSCCTTSCCCEEEEEEEETTCSC----CEE
T ss_pred             EEEEcCccccCCCCCccceecCCCCC-CCcccEEEeccCCeEEEEecC--CCcCCCCcccEEEEEEEeCCCCc----eEE
Confidence            99999999998887666677766554 788999988999999999994  44444 48999999988755432    223


Q ss_pred             eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcE
Q psy12061        548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI  587 (626)
Q Consensus       548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~  587 (626)
                      ......+++.+.+|.|++.|.|+|+|.|..|.|++|.+..
T Consensus       152 ~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~  191 (197)
T 3lpw_A          152 CATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSV  191 (197)
T ss_dssp             EEEESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSS
T ss_pred             eecccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcc
Confidence            3345678899999999999999999999999999886543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=7.8e-24  Score=187.69  Aligned_cols=166  Identities=24%  Similarity=0.373  Sum_probs=134.2

Q ss_pred             CCCCceEEEEee-eCCCCC-CeeEEEeCCEEcc--CCCcEEE-ccCCcEEEccCCCCCCEEEEEEEEcCCCCcee---eE
Q psy12061          2 AGEGGNVTIFCN-PEAAPK-PKFVWKKDGNIIG--SGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDES---KG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~-~~g~p~-p~i~W~~~~~~i~--~~~~~~~-~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~   73 (626)
                      +.+|++++|.|. +.+.|. +.|.|+|++..+.  .+.+..+ ..+++|.|.+++.+|+|.|+|.|.|..+....   ..
T Consensus        20 v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~   99 (201)
T 3s97_C           20 VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFI   99 (201)
T ss_dssp             EETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCE
T ss_pred             EECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhccc
Confidence            568999999999 899999 9999999998874  3334333 45678999999999999999999997766443   23


Q ss_pred             EEEEE-------eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEE
Q psy12061         74 RLIVL-------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI  146 (626)
Q Consensus        74 ~l~v~-------~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  146 (626)
                      .+.+.       .+|.+...+ ....+..|++++|.|.+.+.|.|  .+.|++++..+...       .++...++.|.|
T Consensus       100 ~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~-------~~~~~~~~~L~i  169 (201)
T 3s97_C          100 PLIPIPERTTKPYPADIVVQF-KDVYALMGQNVTLECFALGNPVP--DIRWRKVLEPMPST-------AEISTSGAVLKI  169 (201)
T ss_dssp             EEEEECCSSCCCEEEEEEEEC-CCEEEETTCCEEEEEEEEEESCC--EEEEEETTBCCCTT-------CEEETTTTEEEE
T ss_pred             ceeeccccccCCCCCceEecC-CceEEecCCcEEEEEEccCCCCC--ceEEEeCCCcCCCc-------eeecCCCCEEEE
Confidence            44443       234444443 48889999999999999999876  56999999977643       455556789999


Q ss_pred             eecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        147 TNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      .+++.+|+|.|+|.|.|..|..+..+.|.|+
T Consensus       170 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          170 FNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            9999999999999999999999999998886

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.91  E-value=3.6e-23  Score=184.08  Aligned_cols=194  Identities=17%  Similarity=0.139  Sum_probs=150.1

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      ++.+|.++.+...+. ++.|+|+++ ....+.++.+|.|+|+..+...|...............+.+.+|.|++.|.|+|
T Consensus         8 ~P~~P~~~~~~~~~~-s~~l~W~~p-~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   85 (209)
T 2vkw_A            8 TPSSPSIDQVEPYSS-TAQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   85 (209)
T ss_dssp             CCCCCEEEEEEECSS-CEEEEEECC-SCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEE
T ss_pred             CCcCCcccEeeeccC-eEEEEEcCC-CcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEE
Confidence            346789999988776 699999983 223344599999999988877886654332111223467899999999999999


Q ss_pred             EEecCCCCCCCCccEEEEccCC-CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEE
Q psy12061        367 QAINDVGPGPESEVVTIFSAED-MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY  445 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~-~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~  445 (626)
                      +|.|..|.|.+|....+.|... .|. +|..+.+...+.+++.|+|++|...    ++.|.+|.|+|+. ....+.... 
T Consensus        86 ~A~n~~G~~~~s~~~~~~T~~~~~P~-~P~~~~~~~~~~~sv~l~W~~p~~~----~~~i~~Y~v~~~~-~~~~~~~~~-  158 (209)
T 2vkw_A           86 AALNGKGLGEISAASEFKTQPVREPS-APKLEGQMGEDGNSIKVNLIKQDDG----GSPIRHYLVRYRA-LSSEWKPEI-  158 (209)
T ss_dssp             EEEETTEECCCCCCEEEECCCSCSCC-CCEEEEEECTTSSCEEEEEECCCCT----TSCCCEEEEEEEE-TTSCCCCCE-
T ss_pred             EEEcCCcccCCcccccccccCCCCCC-CCcccccccccCCeEEEEEECcccC----CCCCceEEEEEEC-CCCCCceee-
Confidence            9999999999999988888766 455 7888888888899999999998432    3779999999988 333332222 


Q ss_pred             EecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061        446 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       446 ~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      ........+.+.+|+|++.|.|+|+|.|..|.|++|....+++.
T Consensus       159 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~  202 (209)
T 2vkw_A          159 RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA  202 (209)
T ss_dssp             EECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC-
T ss_pred             ecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhh
Confidence            23445567999999999999999999999999999987766554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.91  E-value=9.1e-24  Score=212.53  Aligned_cols=244  Identities=14%  Similarity=0.094  Sum_probs=163.3

Q ss_pred             CCCCceEEEEeeeCCCCCCee-----EEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKF-----VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i-----~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.| |.|.+     .|+|++..+.. .+..     .|.|.+++. |+| |+|.|.|..+.....+.|.
T Consensus        11 v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~~~~-----~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~   81 (450)
T 1z7z_I           11 LPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-NNRK-----VYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLT   81 (450)
T ss_dssp             EETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-TTEE-----EEEEEEECS-CBC-CEEEEEETTEEEEEECEEE
T ss_pred             EecCCcEEEEEEccC-CCcccccccceeeecceEecC-CCce-----EEEEEeccc-CCe-eEEEEeCCCCcceeEEEEE
Confidence            568999999999999 99998     99999876643 2222     589999987 999 9999987766677788999


Q ss_pred             EEeCCceeeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      |..+|.++...+.+..+.+|++++|.|.+.+.|++ .+.|.|+|+|..+.......      ...++.|.|.++..+|+|
T Consensus        82 V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~------~~~~~~L~i~~~~~~d~G  155 (450)
T 1z7z_I           82 VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG------EPAEVTTTVLVRRDHHGA  155 (450)
T ss_dssp             EEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT------TTEEEEEEEECCSSCSSC
T ss_pred             EEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc------cccceEEEEEeeccccCc
Confidence            99999888777788899999999999999998765 34679999999987543110      112358999999999999


Q ss_pred             eEEEEEEeCCCceE--------EEEEEEEeCCC-CCCCceE-EEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCc
Q psy12061        156 EYECVVKSTVGKIS--------TKTTVIVEGPP-GLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW  225 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~--------~~~~l~v~~~P-~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w  225 (626)
                      .|+|.|.|..|...        ....+.+...| .+|.... ........+.|.|.....  .+.....+.+...+.   
T Consensus       156 ~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~--~P~~~~~~~W~~~~~---  230 (450)
T 1z7z_I          156 NFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGL--FPVSEAQVHLALGDQ---  230 (450)
T ss_dssp             EEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESC--TTGGGCEEEEEETTE---
T ss_pred             eEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCC--CCCCceEEEEeCCCE---
Confidence            99999999977532        44566666552 3332200 123345667777764321  121122233332221   


Q ss_pred             eEeecceeeeeeeccCCceeEEEEeeccCCceE--EEEEEEecCCccC
Q psy12061        226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY--EFKVIAGNELGYG  271 (626)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y--~~~v~a~n~~g~~  271 (626)
                           .+... .............-.+...+.+  .|+|.|.|..|..
T Consensus       231 -----~~~~~-~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~  272 (450)
T 1z7z_I          231 -----RLNPT-VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ  272 (450)
T ss_dssp             -----ECCCE-EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEE
T ss_pred             -----eCCce-EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccE
Confidence                 11100 0000111111111125677766  9999999998754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.91  E-value=3.1e-23  Score=210.14  Aligned_cols=247  Identities=9%  Similarity=0.004  Sum_probs=143.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      |.+|++++|.|.+.+.|...+.|++++..+.....+.....+  +|.|.+|+.+|+|.|+|.|.|..+.......|.|. 
T Consensus        60 v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~-  138 (527)
T 3qs9_E           60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR-  138 (527)
T ss_dssp             ECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-
T ss_pred             EeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEEC-
Confidence            579999999999999888999999999987543322221112  49999999999999999999998876666666653 


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                       |.++..+........|+.+.|.|.+.|.|.|.  |.|++++..+....  ......+     ......+...|+|.|+|
T Consensus       139 -~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~--i~W~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~d~G~Y~C  208 (527)
T 3qs9_E          139 -NTLLYTLRRPYFRKMENQDALVCISESVPEPI--VEWVLCDSQGESCK--EESPAVV-----KKEEKVLHELFGTDIRC  208 (527)
T ss_dssp             ------CEEEEEEEECSSSSCEEEEEEESSCCE--EEEEEC---------------CE-----EECCSEECCCCSSCEEE
T ss_pred             -CceeeccCCCcEEecCCceEEEEEEceecCCe--EEEEECCCCCcccc--ccCCcEE-----EEeeeeccccCCEEEEE
Confidence             33332233344556788899999999999885  58999887664211  0000111     11223345789999999


Q ss_pred             EEEeCCCceEEE-EEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeee
Q psy12061        160 VVKSTVGKISTK-TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD  238 (626)
Q Consensus       160 ~a~n~~g~~~~~-~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~  238 (626)
                      .|.|..|..... +.|.|..+|..|.. .........+.|.|....  +.+.  ..|.|...+...-  ...........
T Consensus       209 ~A~N~~G~~~~~~~~l~V~~~p~~~p~-~~~v~~G~~v~L~C~~~~--g~p~--p~i~W~k~g~~l~--~~~~~~~~~~~  281 (527)
T 3qs9_E          209 CARNELGRECTRLFTIDLNQTPQTTLP-QLFLKVGEPLWIRCKAVH--VNHG--FGLTWELENKALE--EGNYFEMSTYS  281 (527)
T ss_dssp             EEECSSCEEEEECEEEESSSCCCCSCC-EEEECTTSCEEEEEEEEE--SSSC--CCEEEECSSSCCC--GGGEEEEEEEE
T ss_pred             EEEeCCCcccceEEEEEEeccCccCCC-ceEEeCCCeEEEEEEEcc--CCCC--eEEEEEECCEECC--CCceeeeeeec
Confidence            999999987654 77888776653321 222334455666665421  1111  1122222211000  00000000000


Q ss_pred             --c-cCCceeEEEEeeccCCceEEEEEEEecC
Q psy12061        239 --R-YTGRKEASIENVLVPWSTYEFKVIAGNE  267 (626)
Q Consensus       239 --~-~~~~~~~~i~~~l~~~~~y~~~v~a~n~  267 (626)
                        . ......+.|.+ +...+.+.|+|.|.|.
T Consensus       282 ~~~~~~~~~~L~I~~-v~~~DsG~Y~C~a~N~  312 (527)
T 3qs9_E          282 TNRTMIRILFAFVSS-VARNDTGYYTCSSSKH  312 (527)
T ss_dssp             TTTEEEEEEEEEESS-CCGGGCEEEEEEETTE
T ss_pred             cCcceeeEEEEEEcc-CCcccCeEEEEEEEeC
Confidence              0 00112355555 8999999999999997

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.91  E-value=2.4e-23  Score=199.58  Aligned_cols=173  Identities=21%  Similarity=0.286  Sum_probs=136.3

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeCCEEccC-CCcEEEccCCcEEEccCCCCCCEEEEEEEEcC--CCCceee----E
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNV--HGMDESK----G   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~i~~-~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~--~g~~~~~----~   73 (626)
                      +.+|++++|.|.+.|.| .|.|.|+|++..+.. +.++... +++|.|.+++.+|+|.|+|.|.|.  .|.....    +
T Consensus       140 ~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~  218 (329)
T 3oq3_B          140 THDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK  218 (329)
T ss_dssp             SSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEE
T ss_pred             EeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeE
Confidence            56899999999999999 899999999999963 4455544 788999999999999999999997  6654443    7


Q ss_pred             EEEEEeCC----ceeeeCCCceEEecCCcEEEEEEecccC--CcceeEEEeeCCEEeccccCCccCC--CeeEecCCeEE
Q psy12061         74 RLIVLHGP----SYYEQLPPKITIAAHRNLQLRCSAHTEE--LLDVAYIWTHNGVRIGNMDLNELET--PNINIDGGLLE  145 (626)
Q Consensus        74 ~l~v~~~p----~~~~~~~~~~~v~~g~~~~l~C~~~~~p--~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~~~l~  145 (626)
                      .|.|..+|    +.+  .|....+..|++++|.|.+.+.|  .+.+.+.|+++|..+..........  .+.....+.|.
T Consensus       219 ~l~V~~~~~~~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~  296 (329)
T 3oq3_B          219 ILTVIPSQDHRFKLI--LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY  296 (329)
T ss_dssp             EEEEECCCCCCEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCCCcee--cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEE
Confidence            78887776    333  56778999999999999999998  3335779999998853322100000  00011467899


Q ss_pred             EeecCCCCCE-eEEEEEEeCCCceEEEEEEEEe
Q psy12061        146 ITNASFADAG-EYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       146 i~~~~~~d~g-~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      |.+++.+|+| .|+|.|.|..|..+..+.|.|.
T Consensus       297 I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          297 FENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             ESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence            9999999999 9999999999999988888763

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.91  E-value=1.1e-24  Score=207.96  Aligned_cols=167  Identities=17%  Similarity=0.179  Sum_probs=130.5

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeCCEEcc----CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIG----SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~i~----~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |.+|++++|.|.+.|.| .|.|.|+|+|..+.    ...|+... +++|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus        17 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~   95 (315)
T 1itb_B           17 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK   95 (315)
T ss_dssp             EETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC-SSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCE
T ss_pred             EcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc-CCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEE
Confidence            67999999999999987 78999999987532    34555543 56899999999999999999999998877776666


Q ss_pred             EEeCCceeeeCC---CceEEecCCcEEEEEEe------cccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe
Q psy12061         77 VLHGPSYYEQLP---PKITIAAHRNLQLRCSA------HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT  147 (626)
Q Consensus        77 v~~~p~~~~~~~---~~~~v~~g~~~~l~C~~------~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  147 (626)
                      +...++.+...+   ....+..|++++|.|.+      .+.|.|.  +.|+|++..+....      .++...++.|.|.
T Consensus        96 v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~--i~W~k~~~~l~~~~------~~~~~~~~~L~i~  167 (315)
T 1itb_B           96 FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK--LQWYKDCKPLLLDN------IHFSGVKDRLIVM  167 (315)
T ss_dssp             EECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCC--CEEEETTEECCCCS------SSEEEETTEEEES
T ss_pred             EeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCE--EEEEECCEECCCcc------ceEeecCceEEEE
Confidence            655333322112   24678899999999998      7787764  58999999986543      4556678899999


Q ss_pred             ecCCCCCEeEEEEEE-eCCCce---EEEEEEEEe
Q psy12061        148 NASFADAGEYECVVK-STVGKI---STKTTVIVE  177 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~-n~~g~~---~~~~~l~v~  177 (626)
                      +++.+|+|.|+|.|. |..|..   ...+.+.+.
T Consensus       168 ~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          168 NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             eceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEe
Confidence            999999999999999 788876   344445444

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.91  E-value=1.4e-23  Score=180.87  Aligned_cols=155  Identities=20%  Similarity=0.318  Sum_probs=125.5

Q ss_pred             CCCCceEEEEeeeCCCCCCe-eEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.+.|.+. +.|+|+|..+..       .+++|.|.+++.+|+|.|+|.|.|..+  ...+.|.|..+
T Consensus        19 v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~~~   89 (175)
T 1fnl_A           19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVHIG   89 (175)
T ss_dssp             EETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEECS
T ss_pred             eeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-------CceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEeCC
Confidence            56899999999999998875 889999988853       356799999999999999999998554  45678888765


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |..+. + ....+.+|++++|.|.+.+.+++ .++.|+|+|..+...           .....|.|.+++.+|+|.|+|.
T Consensus        90 ~~~~~-~-~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~k~g~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~  155 (175)
T 1fnl_A           90 WLLLQ-A-PRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKYF-----------HHNSDFHIPKATLKDSGSYFCR  155 (175)
T ss_dssp             SEEEE-C-SCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEEE-----------EECCCEEESSCCGGGCEEEEEE
T ss_pred             Cceee-C-CCceecCCCCEEEEEEcCCCCCc-eEEEEEECCeEccCC-----------CCCCEEEEcccChhhCeEEEEE
Confidence            55443 2 34678899999999999988765 477999999988532           2467899999999999999999


Q ss_pred             EEeCCCc-eEEEEEEEEeCC
Q psy12061        161 VKSTVGK-ISTKTTVIVEGP  179 (626)
Q Consensus       161 a~n~~g~-~~~~~~l~v~~~  179 (626)
                      |.|..|. .+..+.|.|.++
T Consensus       156 a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          156 GLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EEETTEEEECCCEEEEEECC
T ss_pred             EEcCCCCccCccEEEEEeCC
Confidence            9997654 566778877653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.91  E-value=1e-23  Score=189.11  Aligned_cols=169  Identities=20%  Similarity=0.314  Sum_probs=135.9

Q ss_pred             CCCCceEEEEeeeCCCC----CCeeEEEe----------------CCEEccC-----CCcEEEcc------CCcEEEccC
Q psy12061          2 AGEGGNVTIFCNPEAAP----KPKFVWKK----------------DGNIIGS-----GGRRKIFE------NGNLLISPV   50 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p----~p~i~W~~----------------~~~~i~~-----~~~~~~~~------~g~L~i~~v   50 (626)
                      |.+|++++|.|.+.+.|    .+.|.|+|                ++..+..     .+|..+..      +++|.|.++
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v   91 (214)
T 3jz7_A           12 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNL   91 (214)
T ss_dssp             EETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSC
T ss_pred             EecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccC
Confidence            57899999999999887    46999998                5555542     46777764      457999999


Q ss_pred             CCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCC--EEeccc
Q psy12061         51 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNG--VRIGNM  127 (626)
Q Consensus        51 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~--~~~~~~  127 (626)
                      +.+|+|.|+|.|.|..|.....+.|.|..+|.+... +....+..|++++|.|.+ .+.|.|  .+.|++++  ..+...
T Consensus        92 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~~~~~~~~~~  168 (214)
T 3jz7_A           92 QLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC-FVDGSEEIGNDFKLKCEPKEGSLPL--QFEWQKLSDSQTMPTP  168 (214)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEE-EEESCCBTTCCEEEEEECSBCCSSC--EEEEEECSTTCCCCGG
T ss_pred             ChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCcee-eeecceecCCcEEEEecCCCCCCCC--EEEEEECCCCCccCcc
Confidence            999999999999999998888899999888876543 333447899999999999 788876  56999954  333322


Q ss_pred             cCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        128 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                             ......++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..||
T Consensus       169 -------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          169 -------WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             -------GGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             -------ceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence                   2223356799999999999999999999999999999999888543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.91  E-value=5.4e-24  Score=210.01  Aligned_cols=173  Identities=12%  Similarity=0.136  Sum_probs=128.2

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcE---------EEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRR---------KIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~---------~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +.+|++++|.|.+.| .|.|.|.|+|+|..+......         ....+++|.|.+++.+|+|.|+|.|.|.   ...
T Consensus       239 v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~  315 (423)
T 3qs7_E          239 LKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQ  315 (423)
T ss_dssp             EETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEE
T ss_pred             EeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCc
Confidence            568999999999999 677999999999988543222         1222347999999999999999999998   677


Q ss_pred             eEEEEEEeCCceeeeCC-CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC
Q psy12061         72 KGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS  150 (626)
Q Consensus        72 ~~~l~v~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  150 (626)
                      .+.|.|..+|.+...+. ....+.+|+++.|.|.+.+.|.|  .|.|+|||..+....       +.......+.+....
T Consensus       316 ~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~-------~~~~~~~~~~~~~~~  386 (423)
T 3qs7_E          316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRKSFPCEQ-------KGLDNGYSISKFCNH  386 (423)
T ss_dssp             EEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC--EEEEEETTEEEECBC-------CBCSSSSEEEEECCC
T ss_pred             eEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC--eEEEEECCEECCCcc-------ccccCCcEEEEEecc
Confidence            88999988876644332 45778899999999999999987  569999999997542       000112233336677


Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCce
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV  186 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~  186 (626)
                      .+|+|.|+|.|.|..|..+.++.|.|...|.+|..+
T Consensus       387 ~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~~  422 (423)
T 3qs7_E          387 KHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH  422 (423)
T ss_dssp             TTCCSCEEEEEEETTEEEEEEEEEC-----------
T ss_pred             cccCEEEEEEEEcCCceEEEEEEEEEecCCcccccC
Confidence            899999999999999999999999999999988653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=199.97  Aligned_cols=172  Identities=26%  Similarity=0.448  Sum_probs=132.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC---CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~---~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+...   .++....++.|.|.+++.+|+|.|+|.|.|..|..... +.|.|
T Consensus       120 v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV  199 (304)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence            457999999999999999999999999998643   36667778899999999999999999999999876654 66666


Q ss_pred             Ee--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         78 LH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        78 ~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      ..  .|+.+...|....+.+|++++|.|.+.+.|.|.  +.|+++|..+....       +.......|.|.++  +|+|
T Consensus       200 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~~~~~~l~~~~-------~~~~~~~~L~i~~~--~d~G  268 (304)
T 2yd9_A          200 RVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY--VKWMQGAEDLTPED-------DMPVGRNVLELTDV--KDSA  268 (304)
T ss_dssp             ECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCE--EEEEETTEECSCSS-------SCCBSEEEEEECSC--CSCE
T ss_pred             EeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCE--EEEEECCEECCCcc-------cccCCcEEEEEccc--ccCE
Confidence            42  233344456778899999999999999998874  68999999987542       22223334666665  6999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      .|+|.|.|..|..+..+.|.|..++..-.
T Consensus       269 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~  297 (304)
T 2yd9_A          269 NYTCVAMSSLGVIEAVAQITVKSLPKAGT  297 (304)
T ss_dssp             EEEEEEEETTEEEEEEEEEC---------
T ss_pred             EEEEEEEeCCCcEEEEEEEEEecCccccc
Confidence            99999999999999999999988775443

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.91  E-value=7.8e-23  Score=182.84  Aligned_cols=192  Identities=15%  Similarity=0.160  Sum_probs=141.9

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEE--EE--------ecCccceEEEeCCcc
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVY--YL--------SRTTRNWALIVGLQP  461 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~--~~--------~~~~~~~~~i~~L~p  461 (626)
                      +|.++++...+.+++.|+|+++...+    +.+.+|.|+|+..+.. .+....  ..        .......+.+.+|+|
T Consensus         4 pP~~~~~~~~~~~sv~l~W~~p~~~~----~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   79 (214)
T 2ibg_A            4 PPTPPNVTRLSDESVMLRWMVPRNDG----LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKP   79 (214)
T ss_dssp             CCCCCEEEEEETTEEEEEEEEECCSS----CCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCT
T ss_pred             CCCCCEeeEecCCEEEEEEECCCCCC----CCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcC
Confidence            67777888889999999999987543    6799999999876542 221100  00        012345689999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCc-cEEEeecCC---CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEec
Q psy12061        462 DTKYYVKVMAYNNAGEGPESE-RYLERTYRK---APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD  537 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~-~~~~~t~~~---~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~  537 (626)
                      ++.|.|+|+|.|..|.|..+. ...+.+...   .|+.+|.++.+...+.+++.|+|+++. .+.++.|.+|.|+|+..+
T Consensus        80 ~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~  158 (214)
T 2ibg_A           80 QHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSS  158 (214)
T ss_dssp             TCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEEEETT
T ss_pred             CCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCC-ccCCCCcceEEEEEEECC
Confidence            999999999999999876665 333444433   244478888888889999999999533 467899999999988765


Q ss_pred             cCCcccccee-eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        538 QDMSRANDTI-IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       538 ~~~~~~~~~~-~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      ....  .... ......+.+.|.+|.|++.|.|+|+|+|..|.|++|.+. .++|.
T Consensus       159 ~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~  211 (214)
T 2ibg_A          159 SAGE--YFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALK-QGRTQ  211 (214)
T ss_dssp             CCSC--CEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCE-EEECC
T ss_pred             CCcc--eEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceE-eeEec
Confidence            4211  2222 223346889999999999999999999999999999654 45554

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.91  E-value=5.7e-22  Score=188.09  Aligned_cols=283  Identities=11%  Similarity=0.060  Sum_probs=180.5

Q ss_pred             CCCCCceEEEEEeccceEEEEecCCCC-CCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceE
Q psy12061        180 PGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY  258 (626)
Q Consensus       180 P~~p~~~~~~~~~~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y  258 (626)
                      ..||.++++.....+++.|+|++|... .....+|.+.+..    .|...   .        . .....+.. +.++..|
T Consensus         4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~----~~~~~---~--------~-~~~~~~~~-~~~~~~y   66 (314)
T 3bpo_C            4 QPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD----KQDKK---I--------A-PETRRSIE-VPLNERI   66 (314)
T ss_dssp             CCCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC------CCCE---E--------E-SSSEEEEE-CCCSSCE
T ss_pred             CCCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecc----cCceE---e--------c-cccEEEEE-EcCCCcE
Confidence            468899999888889999999997654 3556788887643    23110   0        0 11233334 8999999


Q ss_pred             EEEEEEec-CCccCCCCCCCC-cccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcce
Q psy12061        259 EFKVIAGN-ELGYGEPSSPSP-QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ  336 (626)
Q Consensus       259 ~~~v~a~n-~~g~~~~s~~~~-~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~  336 (626)
                      .++|+|.+ ..|.+.++.... .+.+....|+.+|.++.........+.++|+++  .+. +.+..|.|.|+..+...+.
T Consensus        67 ~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~--~~~-~~~~~Y~l~y~~~~~~~~~  143 (314)
T 3bpo_C           67 CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG--RNT-SPDTNYTLYYWHRSLEKIH  143 (314)
T ss_dssp             EEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECC--C----CCCCEEEEEEESSCSSCE
T ss_pred             EEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCC--CCC-CCCccEEEEEEeCCCCccc
Confidence            99999964 455555554432 122455667788999999887888999999983  222 4578999999876544444


Q ss_pred             eeeeeeecceeeEEEEeCCCc----ceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEee
Q psy12061        337 SETLKEYGNVGIAVVRIPSEF----YYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWN  412 (626)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~L~----p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~  412 (626)
                      .+..... ......+.+..+.    ..+.|.|+|.|.|..|.+..+ ...+.+...+.+.+|.++++. ...+++.|+|+
T Consensus       144 ~C~~~~~-~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~-~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~  220 (314)
T 3bpo_C          144 QCENIFR-EGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWE  220 (314)
T ss_dssp             ECCCEEE-ETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-EEEECSSSSEECCCCEEEEEE-EETTEEEEEEE
T ss_pred             cCcCeec-CCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-cEEEehhheEeeCCCCEEEEE-EcCCcEEEEEe
Confidence            3321111 1122344454443    478999999999999887644 344544443333489999987 77889999999


Q ss_pred             eccccccccceeeEEEEEEEEecCCCccceEEEE-----------ecCccceEEEeCCccCceEEEEEEEeeC------C
Q psy12061        413 PIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL-----------SRTTRNWALIVGLQPDTKYYVKVMAYNN------A  475 (626)
Q Consensus       413 ~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~L~p~t~Y~v~V~a~~~------~  475 (626)
                      +|....    +.+.+|.|+|+..+...+......           .......+.+.+|+|++.|.|+|+|.+.      .
T Consensus       221 ~P~~~~----~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~  296 (314)
T 3bpo_C          221 NPQNFI----SRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDD  296 (314)
T ss_dssp             CCTTCC----GGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCC
T ss_pred             CCCccC----CceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCC
Confidence            986422    336899999987765543321110           1134567899999999999999999985      4


Q ss_pred             C-CCCCCccEEEeec
Q psy12061        476 G-EGPESERYLERTY  489 (626)
Q Consensus       476 g-~s~~s~~~~~~t~  489 (626)
                      | .|.+|..+.+.+.
T Consensus       297 g~WS~WS~~~~~~~~  311 (314)
T 3bpo_C          297 KLWSNWSQEMSIGKK  311 (314)
T ss_dssp             CCCCCCCCCEEESCC
T ss_pred             CeeCCCCCCeEeccc
Confidence            5 3677877777554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=197.36  Aligned_cols=172  Identities=20%  Similarity=0.295  Sum_probs=135.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce--eeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~v   77 (626)
                      +.+|+.++|.|.+.|.|.|.+.|+|++..+.  ...++.+..+++|.|.+++.+|+|.|+|.|.|..+...  ....+.|
T Consensus       110 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v  189 (291)
T 2wim_A          110 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV  189 (291)
T ss_dssp             EETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             hcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEe
Confidence            4689999999999999999999999999886  36788888889999999999999999999999886533  3456777


Q ss_pred             EeCCceeeeCCC-ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         78 LHGPSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        78 ~~~p~~~~~~~~-~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      ..+|.+...+.. ...+..|++++|.|.+.+.|.|.  +.|+++|..+.....     ..+...++.|.|.++..+|+|.
T Consensus       190 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~  262 (291)
T 2wim_A          190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENEK-----YILKGSNTELTVRNIINSDGGP  262 (291)
T ss_dssp             EBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCE--EEEEETTEECCCTTT-----EEECSTTCEEEEESCCSTTCEE
T ss_pred             ccCCccccCcccccceecCCCeEEEEEEeecCCCCe--EEEEECCEECcCCcc-----EEEcCCccEEEEeeCCcccCEE
Confidence            677766543221 45678999999999999998774  699999999875421     1122245789999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      |+|.|.|..|..+.++.|.|..++
T Consensus       263 Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          263 YVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             EEEEEEETTEEEEEEEEEEC----
T ss_pred             EEEEEEECCCceeeeEEEEEEEec
Confidence            999999999999999999988765

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.90  E-value=1.6e-22  Score=192.82  Aligned_cols=255  Identities=18%  Similarity=0.157  Sum_probs=173.7

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++|+|.|.+.+.| .+.|.|++++..+..........+++|.|.+++..|+|.|+|.+   .|.....+.|.|..+
T Consensus        18 ~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~V~~p   94 (325)
T 1n26_A           18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVP   94 (325)
T ss_dssp             ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCSCEEEEEECCC
T ss_pred             CCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEeeeEEEEeccC
Confidence            35899999999998765 68999999887763322223345688999999999999999993   677788899999877


Q ss_pred             CceeeeCCCceEEe-cCCcEEEEEEecccCC--c--ceeEEEeeC-CE---EeccccCCccCCCee-EecCCeEEEeecC
Q psy12061         81 PSYYEQLPPKITIA-AHRNLQLRCSAHTEEL--L--DVAYIWTHN-GV---RIGNMDLNELETPNI-NIDGGLLEITNAS  150 (626)
Q Consensus        81 p~~~~~~~~~~~v~-~g~~~~l~C~~~~~p~--p--~~~i~W~~~-~~---~~~~~~~~~~~~~~~-~~~~~~l~i~~~~  150 (626)
                      |.    .|. +.+. .+...+|.|.+.....  +  ...+.+.+. +.   ......      ... ......+.|..+.
T Consensus        95 P~----~P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~c------~~~~~~~~~~c~i~~~~  163 (325)
T 1n26_A           95 PE----EPQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPC------QYSQESQKFSCQLAVPE  163 (325)
T ss_dssp             CC----CCC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEEEE------EEETTTTEEEEEECCCT
T ss_pred             CC----CCc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccccC------CCCCCCCCEEEEECCCc
Confidence            64    333 5554 4655577787764321  1  122333332 11   100000      000 0112356676654


Q ss_pred             -CCCCEeEEEEEEeCCCceEE-EEEEE--EeCCCCCCCceEEEEEec--cceEEEEecCCC--CCCcccEEEEEEeecCC
Q psy12061        151 -FADAGEYECVVKSTVGKIST-KTTVI--VEGPPGLPGGVQVVEVHK--TSATIQWTDGAT--NGRPITHYKIIARTNWN  222 (626)
Q Consensus       151 -~~d~g~Y~C~a~n~~g~~~~-~~~l~--v~~~P~~p~~~~~~~~~~--~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~  222 (626)
                       ....+.++|.|.|..|.... ...+.  ...+|.+|.++.+.....  +++.|+|++|..  .+..+..|.|+|+..+.
T Consensus       164 ~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~  243 (325)
T 1n26_A          164 GDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS  243 (325)
T ss_dssp             TCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTC
T ss_pred             ccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCC
Confidence             45677889999999997532 23332  235799999999877643  689999999865  45567999999999888


Q ss_pred             CCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcc
Q psy12061        223 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQY  280 (626)
Q Consensus       223 ~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~  280 (626)
                      ..|..+...         .....+.+.+ |.+++.|.|+|+|.|..|.+.+|..+..+
T Consensus       244 ~~W~~~~~~---------~~~~~~~l~~-L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~  291 (325)
T 1n26_A          244 KTFTTWMVK---------DLQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEWSPEA  291 (325)
T ss_dssp             SCCEEEECG---------GGCSEEEESS-CCTTCCEEEEEEEEETTTBSCCCCCCCCE
T ss_pred             CCCEEEccc---------CCceEEEEeC-CCCCCeEEEEEEEecCCCCCCCcCCCCcc
Confidence            889765421         1123455544 99999999999999999988777765433

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=3.1e-23  Score=178.97  Aligned_cols=157  Identities=24%  Similarity=0.285  Sum_probs=123.5

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.+.|.| .+.|+|++..+...       +++|.|.+++.+|+|.|+|.|.|..+  ...+.|.|..+
T Consensus        16 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~~~~~--s~~~~l~V~~~   86 (176)
T 1f2q_A           16 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFEDSGEYKCQHQQVNE--SEPVYLEVFSD   86 (176)
T ss_dssp             EETTCCEEEECCTTCC----CCEEEETTEECSCC-------SSEEEECSCCGGGCEEEEEECTTSSC--CCCEEEEEECS
T ss_pred             eecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------ceEEEEeccceecCEEEEEEcCCccc--cccEEEEEeCc
Confidence            5689999999999999886 79999999988642       56799999999999999999988654  45577777755


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      +.....  ....+.+|++++|.|.+.+.+++ ..+.|+|+|..+....           .++.|.|.+++.+|+|.|+|.
T Consensus        87 ~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~  152 (176)
T 1f2q_A           87 WLLLQA--SAEVVMEGQPLFLRCHGWRNWDV-YKVIYYKDGEALKYWY-----------ENHNISITNATVEDSGTYYCT  152 (176)
T ss_dssp             SEEEEE--SCSEEETTSCEEEEEEEGGGCCE-EEEEEEETTEECCSCC-----------CSSEEEESSCCGGGCEEEEEE
T ss_pred             ceeecC--CcceeeCCCCEEEEEEecCCCCc-eEEEEEECCEEEeeec-----------CCCeEEECCCCcccCEEEEEE
Confidence            544433  33578899999999999644332 4679999999885321           457899999999999999999


Q ss_pred             EEeCCC-ceEEEEEEEEeCCCC
Q psy12061        161 VKSTVG-KISTKTTVIVEGPPG  181 (626)
Q Consensus       161 a~n~~g-~~~~~~~l~v~~~P~  181 (626)
                      |.|..+ ..+..+.|.|..+|.
T Consensus       153 a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          153 GKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEETTEEEECCCEEEEEECSCC
T ss_pred             EEeCCcceEecCEEEEEecCCC
Confidence            999644 456678999988875

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.90  E-value=6.9e-23  Score=194.56  Aligned_cols=269  Identities=10%  Similarity=0.063  Sum_probs=169.9

Q ss_pred             CCCCceEEEEeeeCCC-----CCCeeEEEeCCEEccCCCcEEEccC----CcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-----p~p~i~W~~~~~~i~~~~~~~~~~~----g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      |..|++++|.|.+.++     |.|.|.|++||..|.. +++....+    +.|.|.+++.+|+|.|+|.|.+..+.....
T Consensus        12 v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~   90 (313)
T 2d9q_B           12 VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQ   90 (313)
T ss_dssp             ECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEEEEE
T ss_pred             EcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCCceeEEE
Confidence            5789999999999997     6789999999998854 33333333    359999999999999999997655555556


Q ss_pred             EEEEEEeCCceeeeCCCceEEecC-CcEEEEEEecccCCc----ceeEEEeeCCEEeccccCCccCCCee--EecCCeEE
Q psy12061         73 GRLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTEELL----DVAYIWTHNGVRIGNMDLNELETPNI--NIDGGLLE  145 (626)
Q Consensus        73 ~~l~v~~~p~~~~~~~~~~~v~~g-~~~~l~C~~~~~p~p----~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~l~  145 (626)
                      +.|.|..+|.    +|.++.+..- ..-++.|.+......    ...+.+.+.+.......   ......  ........
T Consensus        91 ~~l~v~~~P~----~P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  163 (313)
T 2d9q_B           91 VELRAGYPPA----IPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQG---DSILDCVPKDGQSHCS  163 (313)
T ss_dssp             EEEEECCCCC----CCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCC---CCEEEECCCTTCSEEE
T ss_pred             EEEccCCCCC----CCccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCC---cccccCCCCCCCcEEE
Confidence            7777765553    4555555432 233444444432211    11222222211000000   000000  01223555


Q ss_pred             Eee--cCCCCCEeEEEEEEeCCCceEE-EEEEEEe--CCCCCCCceEEEEE------eccceEEEEecCCCCCCcccEEE
Q psy12061        146 ITN--ASFADAGEYECVVKSTVGKIST-KTTVIVE--GPPGLPGGVQVVEV------HKTSATIQWTDGATNGRPITHYK  214 (626)
Q Consensus       146 i~~--~~~~d~g~Y~C~a~n~~g~~~~-~~~l~v~--~~P~~p~~~~~~~~------~~~~~~l~W~~~~~~~~~~~~y~  214 (626)
                      |..  +.....+.++|.|.|..|.... ...+...  .+|.+|.++.+...      ..+++.|+|++|..++.....|.
T Consensus       164 ~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~  243 (313)
T 2d9q_B          164 IPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCE  243 (313)
T ss_dssp             EEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEE
T ss_pred             ECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEE
Confidence            654  7777888899999999998532 2223222  36889988887654      46899999999865555567999


Q ss_pred             EEEe-ecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCC--cccCCCCCC
Q psy12061        215 IIAR-TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPADKP  287 (626)
Q Consensus       215 v~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~--~~~~~~~~p  287 (626)
                      |+|+ ..+...|..+....        .....+.+.+ |.+++.|.|+|+|.|..|.+.+|..+.  .+.+...+|
T Consensus       244 v~y~~~~~~~~w~~~~~~~--------~~~~~~~l~~-L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P  310 (313)
T 2d9q_B          244 LRHKPQRGEASWALVGPLP--------LEALQYELCG-LLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA  310 (313)
T ss_dssp             EEEEESSSCCCCEEEEEEC--------SCEEEEEECS-CCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC---
T ss_pred             EEEccCCCCCCcEEccccc--------CcceEEEEeC-CCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCC
Confidence            9999 66777897653211        1223455555 999999999999999988776555442  344444433

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.90  E-value=4.8e-23  Score=203.70  Aligned_cols=246  Identities=21%  Similarity=0.221  Sum_probs=169.2

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCC---EEccC----CCcEEEccCCcEEEccCCCCCCE---EEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDG---NIIGS----GGRRKIFENGNLLISPVSRDDSG---IYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~---~~i~~----~~~~~~~~~g~L~i~~v~~~d~G---~Y~C~a~n~~g~~~   70 (626)
                      +.+|++++|.|.+ .|.|.|.|.|+|++   .+...    +.++.+..+|+|.|.+++.+|+|   .|+|.|.|..|...
T Consensus       112 ~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~  191 (395)
T 1bih_A          112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE  191 (395)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             eeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceE
Confidence            5789999999996 78899999999986   22221    56788888899999999999999   99999999998855


Q ss_pred             eeEEEEEEe---CC-------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-
Q psy12061         71 SKGRLIVLH---GP-------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-  139 (626)
Q Consensus        71 ~~~~l~v~~---~p-------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-  139 (626)
                      ......+..   .+       ......+....+.+|++++|.|.+.+.|.|.  +.|+|+|..+.....     .++.. 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~--i~W~~~g~~~~~~~~-----~~~~~~  264 (395)
T 1bih_A          192 VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGY--PNYFKNGKDVNGNPE-----DRITRH  264 (395)
T ss_dssp             EEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCC--CEEEETTEECCCCTT-----SSEESC
T ss_pred             EEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCe--EEEEECCEEcCCCCc-----eeEEEE
Confidence            443222211   10       0011135678899999999999999998875  589999998865421     22221 


Q ss_pred             ---cCCeEEEeecCCCCCEeEEEEEEeCCCceEE-EEEEEEeCCCCC---CCceEEEEEeccceEEEEecCCCCCCcccE
Q psy12061        140 ---DGGLLEITNASFADAGEYECVVKSTVGKIST-KTTVIVEGPPGL---PGGVQVVEVHKTSATIQWTDGATNGRPITH  212 (626)
Q Consensus       140 ---~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~-~~~l~v~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~  212 (626)
                         .+..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..+|..   |.. .........+.|.|..          
T Consensus       265 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~-~~~~~~g~~~~l~C~~----------  333 (395)
T 1bih_A          265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIPCKV----------  333 (395)
T ss_dssp             SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCS-EEEECTTSCEEEECEE----------
T ss_pred             ecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCc-ceEecCCCeEEEEEEE----------
Confidence               2347999999999999999999999998655 889998876642   222 1122233445555542          


Q ss_pred             EEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        213 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       213 y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                         ...+.....|.+.+..+....... .. ..+.+.+ +...+.+.|+|.|.|..|..
T Consensus       334 ---~g~p~p~v~W~~~g~~~~~~~~~~-~~-~~L~i~~-~~~~d~G~Y~C~a~N~~G~~  386 (395)
T 1bih_A          334 ---TGLPAPNVVWSHNAKPLSGGRATV-TD-SGLVIKG-VKNGDKGYYGCRATNEHGDK  386 (395)
T ss_dssp             ---EEESCCCCEEEETTEECCSSSEEE-ET-TEEEESS-CCSTTCEEEEEEEEETTEEE
T ss_pred             ---CcccCCeeEEEECCEECCCCceEE-EC-CEEEEee-CCcccCEEEEEEEEccCCCc
Confidence               222222344544433221110000 11 1556655 99999999999999999864

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.90  E-value=6.1e-23  Score=193.34  Aligned_cols=236  Identities=15%  Similarity=0.159  Sum_probs=158.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|    .|.|+|++..+    ......+++|.|.+++.+|+|.|+|.|.|  |. ...+.|.|..+|
T Consensus        24 v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~   92 (290)
T 2o26_X           24 VEAGDTLSLTCIDPD----FVRWTFKTYFN----EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPA   92 (290)
T ss_dssp             EETTSCEEEEEECTT----EEEEEEECSSS----CEEEECSSEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSS
T ss_pred             EcCCCcEEEEECCCC----cEEEecCCcce----eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCC
Confidence            568999999999998    99999999877    22333447899999999999999999999  54 677899998877


Q ss_pred             ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEE-eeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCE-eEE
Q psy12061         82 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW-THNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAG-EYE  158 (626)
Q Consensus        82 ~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g-~Y~  158 (626)
                      ... ..+....+.+|++++|.|.+.+ |. ...+.| ++||..+...       .++. ...+.|.|.+++.+|+| .|+
T Consensus        93 ~~~-~~~~~~~~~~g~~v~l~C~~~~-p~-~~~v~W~~~~g~~l~~~-------~~~~~~~~~~L~i~~v~~~d~G~~Y~  162 (290)
T 2o26_X           93 KLF-LVGLPLFGKEDSDALVRCPLTD-PQ-VSQYSLIECDGKSLPTD-------LTFVPNPKAGITIKNVKRAYHRLCVR  162 (290)
T ss_dssp             CCB-CCCCCEEEETTSCEEECCCBSC-CS-CEEEEEEETTSCCCCTT-------CEEEEETTTEEEEESCCGGGTTCEEE
T ss_pred             ccc-ccccceEEecCCeEEEeCcCCC-CC-CceEEEEeCCCcCCCCC-------CceeeCCCCCEEEecccHHHCCCEEE
Confidence            766 4567788999999999999995 54 146799 5788877543       3333 34578999999999999 999


Q ss_pred             EEEEeCCCce-EEEEEEEEeCCCCCCCceEE-----EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecce
Q psy12061        159 CVVKSTVGKI-STKTTVIVEGPPGLPGGVQV-----VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHV  232 (626)
Q Consensus       159 C~a~n~~g~~-~~~~~l~v~~~P~~p~~~~~-----~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~  232 (626)
                      |.|.|..|.. +..+.|.|...+..|..+..     .......+.|.|..... ..+.   .        ..|.+.+...
T Consensus       163 C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~-p~p~---~--------i~W~~~~~~~  230 (290)
T 2o26_X          163 CAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDV-STSV---N--------SMWLKMNPQP  230 (290)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEES-STTC---E--------EEEEEESSSE
T ss_pred             EEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecC-Ccce---e--------EEEecCCCCC
Confidence            9999986653 34577877732221111111     11223445555553211 1111   1        1232222210


Q ss_pred             ----eeee----ee--ccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        233 ----IGKE----VD--RYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       233 ----~~~~----~~--~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                          ....    ..  .......+.|.+ +...+.+.|+|.|.|..|..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~N~~g~~  278 (290)
T 2o26_X          231 QHIAQVKHNSWHRGDFNYERQETLTISS-ARVDDSGVFMCYANNTFGSA  278 (290)
T ss_dssp             EECCCEECCEEEEETTEEEEEEEEEESS-CCSSSCEEEEEEEECSSCEE
T ss_pred             ccceeecccccccCceeeEEEEEEEEcC-CCcccCeEEEEEEeCCCCcE
Confidence                0000    00  011223455555 88899999999999999865

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.90  E-value=1.3e-23  Score=182.94  Aligned_cols=158  Identities=18%  Similarity=0.322  Sum_probs=126.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEE--cc------------CCCcEEEc----cCC--cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNI--IG------------SGGRRKIF----ENG--NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~--i~------------~~~~~~~~----~~g--~L~i~~v~~~d~G~Y~C~   61 (626)
                      +.+|++++|.|.+.+.|.+.|.|+|++..  +.            ...|..+.    .+|  +|.|.+++.+|+|.|+|.
T Consensus         7 ~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   86 (184)
T 2ny1_B            7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   86 (184)
T ss_dssp             EETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEE
Confidence            67999999999999999999999998863  21            12344443    233  499999999999999999


Q ss_pred             EEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC
Q psy12061         62 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG  141 (626)
Q Consensus        62 a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  141 (626)
                      |.|..+    .+.|.|..    +.. +....+.+|++++|.|.+.+.|.|  .+.|++++..+.             ...
T Consensus        87 ~~~~~~----~~~l~V~~----~~~-~~~~~v~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~-------------~~~  142 (184)
T 2ny1_B           87 VEDQKE----EVQLLVFG----LTA-NSDTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGKNI-------------QGG  142 (184)
T ss_dssp             ETTEEE----EEEEEEEE----EEE-SSCSEEETTCCEEEEEECCTTCCC--EEEEECTTSCEE-------------EES
T ss_pred             EEcCCC----cEEEEEEE----ecC-CCCceeecCCCEEEEEEcCCCCCC--EEEEEeCCCccc-------------cCc
Confidence            998744    56677753    222 445678999999999999998765  569999876542             256


Q ss_pred             CeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        142 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       142 ~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      +.|.|.+++.+|+|.|+|.|.|..+..+..+.|.|.+.|.+|
T Consensus       143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~  184 (184)
T 2ny1_B          143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  184 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred             eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence            799999999999999999999999999999999999988653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.90  E-value=2.4e-23  Score=204.69  Aligned_cols=163  Identities=25%  Similarity=0.466  Sum_probs=142.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+...   ....++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus       219 ~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  295 (382)
T 1cs6_A          219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQP  295 (382)
T ss_dssp             EETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEccCCCCEEEEEECCcccccE---EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCC
Confidence            468999999999999999999999988776431   12235679999999999999999999999998888999998888


Q ss_pred             ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEE
Q psy12061         82 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        82 ~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      .+.. .+....+..|++++|.|.+.+.|.|.  +.|+|+|..+...       .++...++.|.|.+++.+|+|.|+|.|
T Consensus       296 ~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a  365 (382)
T 1cs6_A          296 DWLD-VITDTEADIGSDLRWSCVASGKPRPA--VRWLRDGQPLASQ-------NRIEVSGGELRFSKLVLEDSGMYQCVA  365 (382)
T ss_dssp             EEEE-CCCCEEEETTCCEEEECEEEEESCCE--EEEEETTEECCCC-------SSEEEETTEEEESSCCGGGCEEEEEEE
T ss_pred             Cccc-CCCccEEcCCCeEEEEEEeeeecCCE--EEEEECCEECCCC-------ceEEEECCEEEECcCCcccCEEEEEEE
Confidence            7765 46678899999999999999998874  6899999998754       456667889999999999999999999


Q ss_pred             EeCCCceEEEEEEEEe
Q psy12061        162 KSTVGKISTKTTVIVE  177 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~  177 (626)
                      .|..|..+..+.|.|.
T Consensus       366 ~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          366 ENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEe
Confidence            9999999999999885

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=2.5e-23  Score=186.20  Aligned_cols=173  Identities=20%  Similarity=0.312  Sum_probs=134.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEc------------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC--
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG--   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i------------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g--   67 (626)
                      +.+|++++|.|.+.|.|.+.|.|+|++..+            ....|+.+. +++|.|.+++.+|+|.|+|.|.|..|  
T Consensus        13 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~Y~C~~~~~~g~~   91 (212)
T 1f97_A           13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGEYTCMVSEEGGQN   91 (212)
T ss_dssp             EETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEEEEEEEEETTSSS
T ss_pred             EEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeEEEEEEEccCCCc
Confidence            578999999999999999999999987653            234566554 48899999999999999999999877  


Q ss_pred             CceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEE-ecccCCcceeEEEeeCCE-EeccccCC--ccCCCeeE--ecC
Q psy12061         68 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS-AHTEELLDVAYIWTHNGV-RIGNMDLN--ELETPNIN--IDG  141 (626)
Q Consensus        68 ~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~-~~~~p~p~~~i~W~~~~~-~~~~~~~~--~~~~~~~~--~~~  141 (626)
                      .....+.|.|..+|.+... +....+..|++++|.|. +.+.|.|  .+.|++++. .+......  .....+..  ...
T Consensus        92 ~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (212)
T 1f97_A           92 YGEVSIHLTVLVPPSKPTI-SVPSSVTIGNRAVLTCSEHDGSPPS--EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS  168 (212)
T ss_dssp             EEEEEEEEEEEBCCCCCEE-ECCSEEETTSCEEEEEECSCCBSCC--EEEEEETTEESBC-----CBSCSSSCEEECTTT
T ss_pred             ccEEEEEEEEEcCCCCccc-CCccccCCCCeEEEEEEcccCcCCC--EEEEEeCCcccccccccccccccCceeEecCCC
Confidence            3456678888888876554 34467899999999999 7888876  569999999 77653210  00111222  356


Q ss_pred             CeEEEeecCCCCCEeEEEEEEeCCCce--EEEEEEEEeC
Q psy12061        142 GLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEG  178 (626)
Q Consensus       142 ~~l~i~~~~~~d~g~Y~C~a~n~~g~~--~~~~~l~v~~  178 (626)
                      +.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|..
T Consensus       169 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          169 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            789999999999999999999999987  5566777664

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=197.36  Aligned_cols=169  Identities=24%  Similarity=0.297  Sum_probs=141.6

Q ss_pred             CCCCceEEEEeeeCC----------CCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNPEA----------APKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g----------~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +.+|+.+.|.|.+.|          .|.|.+.|+|+|..+..+.++.+...+   .|.|.+++.+|+|.|+|.|.|..|.
T Consensus       110 ~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  189 (317)
T 2y25_A          110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG  189 (317)
T ss_dssp             HTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             cccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce
Confidence            357888888888887          789999999999999888888776655   3999999999999999999999998


Q ss_pred             ceeeEEEEEEe--------------------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc
Q psy12061         69 DESKGRLIVLH--------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD  128 (626)
Q Consensus        69 ~~~~~~l~v~~--------------------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~  128 (626)
                      ......|.|..                    .|.+...+|....+..|++++|.|.+.+.|.|.  +.|+++|..+... 
T Consensus       190 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--i~W~~~g~~~~~~-  266 (317)
T 2y25_A          190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE--VSWLKNEKALASD-  266 (317)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCE--EEEEESSSEECCC-
T ss_pred             EEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCE--EEEEECCEeCCCC-
Confidence            87777776531                    355555567788999999999999999998874  6999999998754 


Q ss_pred             CCccCCCeeEecC--C---eEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        129 LNELETPNINIDG--G---LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       129 ~~~~~~~~~~~~~--~---~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                            .++.+..  +   .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus       267 ------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          267 ------DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             ------SSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ------CcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence                  2333322  2   8999999999999999999999999999999998754

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.90  E-value=4.9e-23  Score=194.25  Aligned_cols=172  Identities=22%  Similarity=0.345  Sum_probs=139.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc--CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc--eeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~--~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+.  .+.++....++.|.|.+++.+|+|.|+|.|.|..+..  .....|.|
T Consensus       112 ~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v  191 (291)
T 1qz1_A          112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV  191 (291)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred             ccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEE
Confidence            4689999999999999999999999999875  3467777888899999999999999999999976443  34567777


Q ss_pred             EeCCceeeeC-CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCC
Q psy12061         78 LHGPSYYEQL-PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADA  154 (626)
Q Consensus        78 ~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~  154 (626)
                      ..+|.+...+ +....+..|++++|.|.+.+.|.|  .+.|+++|..+.....   ...++..  ....|.|.+++.+|+
T Consensus       192 ~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~  266 (291)
T 1qz1_A          192 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP--TMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVDKNDE  266 (291)
T ss_dssp             EEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC--EEEEEETTEECCCC-----CCSSEEECTTSCEEEECSCCGGGC
T ss_pred             ecCCcccccccccccccccCceEEEEEEEEEeCCC--cEEEEECCEECcCCCC---CCcceEEcCCCcEEEEEecChhcC
Confidence            7777665432 235678899999999999999887  4699999999875421   0012222  356899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |.|+|.|.|..|..+..+.|.|..
T Consensus       267 G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          267 AEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCceEEEEEEEEEc
Confidence            999999999999999999998864

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.90  E-value=4.3e-23  Score=183.90  Aligned_cols=172  Identities=20%  Similarity=0.329  Sum_probs=130.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc-------------------CCCcEEEccCCcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~-------------------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++++|.|.+.+.|.+.|.|+|++....                   ..+|..+..+++|.|.+++.+|+|.|+|.+
T Consensus        11 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~   90 (208)
T 3r4d_A           11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (208)
T ss_dssp             EETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             eecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEEEE
Confidence            5789999999999888999999999754221                   245777888889999999999999999999


Q ss_pred             EcCC-CCceeeEEEEEEeCCc--eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe
Q psy12061         63 TNVH-GMDESKGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI  139 (626)
Q Consensus        63 ~n~~-g~~~~~~~l~v~~~p~--~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  139 (626)
                      .|.. +.......|.|..++.  .+...+..  +..|++++|.|.+.+.| |  .+.|+++|..+....     ......
T Consensus        91 ~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p--~i~W~~~g~~l~~~~-----~~~~~~  160 (208)
T 3r4d_A           91 TDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-A--NIQWLFNSQSLQLTE-----RMTLSQ  160 (208)
T ss_dssp             ECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-C--EEEEEETTEECCCCS-----SEEEET
T ss_pred             EcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-C--ceEEEECCEeCCCCC-----CeEEcC
Confidence            9985 4455667888876532  22222333  88999999999999976 4  679999999987542     112223


Q ss_pred             cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCCCCCC
Q psy12061        140 DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLP  183 (626)
Q Consensus       140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p  183 (626)
                      .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|..+
T Consensus       161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~~  205 (208)
T 3r4d_A          161 NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH  205 (208)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC------
T ss_pred             CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCccc
Confidence            45899999999999999999999999976 556788777766543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.90  E-value=6.2e-23  Score=195.91  Aligned_cols=173  Identities=19%  Similarity=0.210  Sum_probs=135.4

Q ss_pred             CCCCceEEEEeee------CCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEE-cCCCCce---e
Q psy12061          2 AGEGGNVTIFCNP------EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT-NVHGMDE---S   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~------~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~-n~~g~~~---~   71 (626)
                      +.+|++++|.|.+      .|.|.|.|.|+|+|.++..+.......++.|.|.+++.+|+|.|+|.|. |..|...   .
T Consensus       115 ~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~  194 (315)
T 1itb_B          115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR  194 (315)
T ss_dssp             EETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             EecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEE
Confidence            4579999999999      8999999999999999976544455567799999999999999999999 7888763   3


Q ss_pred             eEEEEEE-----eCCceeeeCCC-ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-------
Q psy12061         72 KGRLIVL-----HGPSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-------  138 (626)
Q Consensus        72 ~~~l~v~-----~~p~~~~~~~~-~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-------  138 (626)
                      ...+.+.     .+|.+.. ++. ...+..|++++|.|.+.+.|.|  .+.|++||..+........ ..+..       
T Consensus       195 ~~~~~~~~~~~~~~P~~~~-~~~~~~~~~~g~~v~l~C~~~g~P~p--~i~W~~~g~~i~~~~~~~~-~~~~~~~~~~~~  270 (315)
T 1itb_B          195 VIEFITLEENKPTRPVIVS-PANETMEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVIDEDDPVLG-EDYYSVENPANK  270 (315)
T ss_dssp             EEEEEEECCCCCCCCEECS-CCSEEEECCSSSCEEEEEEEEECTTS--EEEEEETTEECCTTCSSEE-EEEEEECCSSCG
T ss_pred             EEEEEEecCCCCCCCEEec-CCCCcEEEeCCCcEEEEEEEecCCCC--eeEEEECCEECCccccccc-ccceeeeccCCC
Confidence            3445454     3455543 344 3688999999999999999887  4599999999876421000 01111       


Q ss_pred             ---ecCCeEEEeecCCCC-CEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        139 ---IDGGLLEITNASFAD-AGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       139 ---~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                         ...+.|.|.+++.+| +|.|+|.|.|..|..+..+.|.|..
T Consensus       271 ~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             GGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             ceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence               123489999999999 9999999999999999999988753

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=4.9e-22  Score=203.90  Aligned_cols=175  Identities=17%  Similarity=0.248  Sum_probs=126.0

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEeCCEEccCCCcEEE---ccCC------cEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKI---FENG------NLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~~~~~~---~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      +.+|++++|.|.+.|.|+|  +|.|+|||.+|..+.+...   ..+|      .|.|.+++.+|+|.|+|.|.|..|...
T Consensus       126 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  205 (523)
T 2rcj_C          126 ELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  205 (523)
T ss_pred             ccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccc
Confidence            3579999999999998764  9999999998865433221   1222      599999999999999999999988766


Q ss_pred             eeEEEEE----EeCCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCCcc--CCCeeEecCCe
Q psy12061         71 SKGRLIV----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGL  143 (626)
Q Consensus        71 ~~~~l~v----~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~  143 (626)
                      ....+.+    ..+|.+... +....+.+|++++|.|.+.+. |.| ++|.|+|+|..+........  ..+.+ ...+.
T Consensus       206 ~~~~~~~~~~~~~~P~v~~~-~~~~~~~~G~~~~l~C~~~g~~P~p-~~v~W~k~g~~~~~~~~~~~~~~~g~~-~~~s~  282 (523)
T 2rcj_C          206 KTVAPTECSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPQP-VTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSV  282 (523)
T ss_pred             cceeeeecCCCCcCCEEEec-CCCcccccCCceEEEEEEeceeCCC-eEEEEecCCcccceEeCCcEecCCCcE-EEEEE
Confidence            6555432    234554433 334456899999999999987 654 47799999987643211000  00111 11348


Q ss_pred             EEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       144 l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      |.|.+++..| |.|+|.|.|..|.......|.+...|
T Consensus       283 L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P  318 (523)
T 2rcj_C          283 VTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLP  318 (523)
T ss_pred             EEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCc
Confidence            9999999999 99999999999988777777655443

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.89  E-value=3.2e-22  Score=189.16  Aligned_cols=228  Identities=15%  Similarity=0.135  Sum_probs=158.8

Q ss_pred             EEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEE
Q psy12061        349 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGH  428 (626)
Q Consensus       349 ~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y  428 (626)
                      ..+.+.++... .-.|.|.|.+. |..... ..........|+.+|.++++...+.+++.|+|+++...+     .+.+|
T Consensus        65 ~~L~i~~~~~~-~g~Y~C~a~~~-g~~~~~-~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~-----~~~~Y  136 (303)
T 1i1r_A           65 SSVTFTDIASL-NIQLTCNILTF-GQLEQN-VYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-----LETNF  136 (303)
T ss_dssp             EEEEECSCCCS-EEEEEEEEEET-TTEEEE-EEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCS-----SCCEE
T ss_pred             EEEEEcCcCCC-ceEEEEecccC-CCcceE-EEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCC-----CCcCE
Confidence            45778887654 34567777663 322111 111111223445589999998888899999999887542     25699


Q ss_pred             EEEEEecCCCccceEEEEecCccceEEEeCC-ccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeee--
Q psy12061        429 RIKYWKEDNPEETAVYYLSRTTRNWALIVGL-QPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI--  505 (626)
Q Consensus       429 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~--  505 (626)
                      .|+|+........  ..........+.+.+| .|++.|.|+|.|.|..|.+.. ....+.+....++.||.++.+...  
T Consensus       137 ~v~~~~~~~~~~~--~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s-~~~~~~~~~~~~p~pP~~~~v~~~~~  213 (303)
T 1i1r_A          137 TLKSEWATHKFAD--CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEE  213 (303)
T ss_dssp             EEEEEETTEECCC--EECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEEC-CCEEECGGGGEECCCCEEEEEECCSS
T ss_pred             EEEEEecCCCCcc--CCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCccc-CCEEECHHHeEecCCCcceEEEEecC
Confidence            9998765422111  1123344567999999 999999999999999998753 345555555566779999988755  


Q ss_pred             CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeee---cCccceEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12061        506 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP---VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM  582 (626)
Q Consensus       506 ~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~  582 (626)
                      +.+++.|+|+  +|...++.+.+|.|+|+..+...   +..+..   ....+.+.|.+|.|++.|.|+|+|+|..|.|++
T Consensus       214 ~~~sv~l~W~--~p~~~~~~i~~Y~v~y~~~~~~~---w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~  288 (303)
T 1i1r_A          214 LSSILKLTWT--NPSIKSVIILKYNIQYRTKDAST---WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYW  288 (303)
T ss_dssp             SSSCEEEEEE--CCGGGGTSCEEEEEEEEETTCSS---CEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCC
T ss_pred             CCCEEEEEEC--CCCCCCcccEEEEEEEEeCCCCC---ceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCc
Confidence            6789999999  55556788999999998765331   111111   345678999999999999999999999999888


Q ss_pred             CCCc--EEEeec
Q psy12061        583 SSPA--ITFQMG  592 (626)
Q Consensus       583 s~~~--~~~~~~  592 (626)
                      |+++  +.++|.
T Consensus       289 S~wS~~~~~~T~  300 (303)
T 1i1r_A          289 SDWSEEASGITY  300 (303)
T ss_dssp             CCCCCCEEEECC
T ss_pred             CCCCCccceeCC
Confidence            7543  345554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.89  E-value=1.2e-22  Score=191.32  Aligned_cols=243  Identities=14%  Similarity=0.126  Sum_probs=160.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEE-ccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~-~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|    .|.|++++....   +... ..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        16 v~~G~~v~L~C~~~~----~v~W~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~   88 (289)
T 3ejj_X           16 VEPGETVTLRCVSNG----SVEWDGPISPYW---TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP   88 (289)
T ss_dssp             ECTTCCEEEEEECSS----CCEEECSCSSSS---EECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCS
T ss_pred             ECCCCCEEEEEEeCC----cEEEccCCCceE---EEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCC
Confidence            568999999999988    499998774321   1111 12357999999999999999999999998888899999887


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      |..+...+....+.+|++++|.|.+.+.+.+. .+.|++ ++..+...       .++. ..++.|.|.+++.+|+|.|+
T Consensus        89 ~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~  160 (289)
T 3ejj_X           89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKD-SVSLMREGGRQVLRK-------TVYFFSPWRGFIIRKAKVLDSNTYV  160 (289)
T ss_dssp             SCSEEESCSEEEEETTSCEEECEEESCGGGGG-SEEEEEGGGEECCTT-------CCEEEETTTEEEESSCCGGGCEEEE
T ss_pred             CcceecccceEEEecCCceEeEEEccCCCcce-EEEEEecCCeecCCC-------ccEEECCCCCEEEeecccccCEEEE
Confidence            77666667889999999999999999877653 468975 67666543       2333 35678999999999999999


Q ss_pred             EEEE-eCCCceEEEEEEEEeCCCCCCCceEEE-----EEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecce
Q psy12061        159 CVVK-STVGKISTKTTVIVEGPPGLPGGVQVV-----EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHV  232 (626)
Q Consensus       159 C~a~-n~~g~~~~~~~l~v~~~P~~p~~~~~~-----~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~  232 (626)
                      |.+. +..+..+..+.|.|...+..|..+...     ......+.|.|.....  .+..  .+        .|.+.+..+
T Consensus       161 C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~--~p~~--~i--------~W~~~~~~~  228 (289)
T 3ejj_X          161 CKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNA--EVGF--NV--------ILKRGDTKL  228 (289)
T ss_dssp             EEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEES--SSCC--EE--------EEEETTEEC
T ss_pred             EEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCC--CCce--EE--------EEEECCEEe
Confidence            9999 555666778888887543222122211     1234455555553210  1111  12        232222211


Q ss_pred             eeeee-----eccCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        233 IGKEV-----DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       233 ~~~~~-----~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                      .....     ........+.+.+ +...+.+.|+|.|.|..|...
T Consensus       229 ~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~  272 (289)
T 3ejj_X          229 EIPLNSDFQDNYYKKVRALSLNA-VDFQDAGIYSCVASNDVGTRT  272 (289)
T ss_dssp             CCCEEEEECSSSEEEEEEEEESS-CCSSSCEEEEEEEECSSCEEE
T ss_pred             eccCCcccccceEEeeEEEEEEe-ecccCCEEEEEEEEcCCCCcc
Confidence            11000     0001122455544 899999999999999998654

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.89  E-value=4.4e-22  Score=177.91  Aligned_cols=197  Identities=14%  Similarity=0.126  Sum_probs=147.4

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeee--------cceeeEEEEeCCCcce
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEY--------GNVGIAVVRIPSEFYY  359 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~L~p~  359 (626)
                      .+|.++.+...+.+++.|+|++  +...++++.+|.|+|+..+ ...|........        .......+.+.+|.|+
T Consensus         3 ~pP~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   80 (214)
T 2ibg_A            3 YPPTPPNVTRLSDESVMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   80 (214)
T ss_dssp             CCCCCCEEEEEETTEEEEEEEE--ECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred             CCCCCCEeeEecCCEEEEEEEC--CCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence            3555666666788999999998  4445678999999999876 367765442211        1134567889999999


Q ss_pred             eEEEEEEEEecCCCCCCCCc-cEEEEccCC---CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEec
Q psy12061        360 TEYEVKVQAINDVGPGPESE-VVTIFSAED---MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE  435 (626)
Q Consensus       360 ~~Y~~~v~a~n~~g~~~~s~-~~~~~t~~~---~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~  435 (626)
                      +.|.|+|+|.|..|.+..+. ...+.+...   .|+.+|.++.+...+.+++.|+|+++..   ..++.+.+|.|+|+..
T Consensus        81 t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~---~~~~~i~~Y~v~~~~~  157 (214)
T 2ibg_A           81 HTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASD---ADEHLITGYYAYYRPS  157 (214)
T ss_dssp             CEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTT---CCGGGCCEEEEEEEET
T ss_pred             CEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCc---cCCCCcceEEEEEEEC
Confidence            99999999999999877665 233333322   2444688888888899999999999862   1236799999999877


Q ss_pred             CCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        436 DNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      +.................+++.+|+|++.|.|+|+|.|..|.|++|..+.++|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  212 (214)
T 2ibg_A          158 SSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR  212 (214)
T ss_dssp             TCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             CCCcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEecC
Confidence            7632222223333445679999999999999999999999999999999998864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=3.2e-23  Score=199.73  Aligned_cols=180  Identities=22%  Similarity=0.398  Sum_probs=141.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEE---E-ccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK---I-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~---~-~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+....++.   . ..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus       135 v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  214 (334)
T 1ry7_B          135 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV  214 (334)
T ss_dssp             EETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEE
Confidence            3479999999999999999999999999987654431   1 12347999999999999999999999999888889999


Q ss_pred             EeC----CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee----CCEEeccccCCcc---CCCee---EecCCe
Q psy12061         78 LHG----PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH----NGVRIGNMDLNEL---ETPNI---NIDGGL  143 (626)
Q Consensus        78 ~~~----p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~----~~~~~~~~~~~~~---~~~~~---~~~~~~  143 (626)
                      ...    |.+....|....+..|++++|.|.+.+.|.|  .+.|+|    ||..+........   .....   ......
T Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p--~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (334)
T 1ry7_B          215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV  292 (334)
T ss_dssp             ECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE--EEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCC
T ss_pred             ecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC--eEEEEECCcCCCccccCCCCeeEEEeecCccccccccccE
Confidence            863    3344445678899999999999999998876  568999    7777654321000   00000   011248


Q ss_pred             EEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       144 l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      |.|.+++.+|+|.|+|.|.|..|..+.++.|.|...|.++
T Consensus       293 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             EEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC-
T ss_pred             EEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCCc
Confidence            9999999999999999999999999999999999877543

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.89  E-value=1.7e-22  Score=180.75  Aligned_cols=192  Identities=17%  Similarity=0.147  Sum_probs=143.5

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCC-ccCceEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGL-QPDTKYYV  467 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~v  467 (626)
                      .|+.+|.++++...+.+++.|+|+++...+     ...+|.|+|+........  ..........+.+.+| .+++.|.|
T Consensus         6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~-----~~~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~t~Y~~   78 (215)
T 1bqu_A            6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETH-----LETNFTLKSEWATHKFAD--CKAKRDTPTSCTVDYSTVYFVNIEV   78 (215)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCS-----SCCEEEEEEEETTEECCC--EECCSSCTTEEECSSCCCTTSCEEE
T ss_pred             CCCCCCEeeEeEECCCCcEEEEcCCCCCCC-----CCceEEEEEEEcCCCccc--cccccCCcceEEEcCCccccccEEE
Confidence            455589999999888899999999987542     246999998765432111  1122344567999999 99999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeee--CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND  545 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~--~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~  545 (626)
                      +|.|.|..|.+. +....+.+....++.+|.++.+...  +.+++.|+|+  +|...++.+.+|.|+|+..+...   ..
T Consensus        79 ~V~A~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~--~p~~~~~~i~~Y~v~y~~~~~~~---~~  152 (215)
T 1bqu_A           79 WVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDAST---WS  152 (215)
T ss_dssp             EEEEEETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEE--CCGGGGTSCEEEEEEEEETTCSS---CE
T ss_pred             EEEEEecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEe--CCCCCCcceEEEEEEEccCCCCC---ce
Confidence            999999999876 4456666666556679999988765  6789999999  56666788999999998765331   11


Q ss_pred             eee---ecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCc--EEEeecc
Q psy12061        546 TII---PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA--ITFQMGE  593 (626)
Q Consensus       546 ~~~---~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~--~~~~~~~  593 (626)
                      .+.   .....+.+.|.+|.|++.|.|+|+|+|..|.|.+|+++  +.+++.+
T Consensus       153 ~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~  205 (215)
T 1bqu_A          153 QIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE  205 (215)
T ss_dssp             ECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECC
T ss_pred             EeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccc
Confidence            111   14567899999999999999999999999997755433  3455543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.89  E-value=8e-23  Score=194.75  Aligned_cols=169  Identities=17%  Similarity=0.175  Sum_probs=138.7

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCCcee--e
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDES--K   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~   72 (626)
                      +.+|+.+.|.|.+. |.|.|.+.|++++..+....+.....+|      .|.|..+..+|+|.|+|.|.|..+....  .
T Consensus       129 ~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  208 (313)
T 4fqp_A          129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLT  208 (313)
T ss_dssp             CCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEE
T ss_pred             eecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceee
Confidence            45788999999875 6799999999999887655444444444      3899999999999999999998776443  4


Q ss_pred             EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC
Q psy12061         73 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA  152 (626)
Q Consensus        73 ~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  152 (626)
                      ..|.|..+|.+...++....+..|++++|.|.+.|.|.|. .|.|+|+|..+...         ....++.|.|.+++.+
T Consensus       209 ~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~-~v~W~~~~~~l~~~---------~~~~~~~L~i~~v~~~  278 (313)
T 4fqp_A          209 VNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT-GYNWSTTMGPLPPF---------AVAQGAQLLIRPVDKP  278 (313)
T ss_dssp             EECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCC-EEEEEETTBSCCTT---------EEEETTEEEECCCSSC
T ss_pred             eecccccCCccccccccceeecCCCeEEEEEEecCCCCCc-EEEEEECCEECCCc---------eEEeCCEEEECcCChh
Confidence            5677777887766667777888999999999999999873 56999999887532         2345679999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      |+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       279 d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          279 INTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             hCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence            9999999999999999999999998765

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.4e-23  Score=196.07  Aligned_cols=176  Identities=16%  Similarity=0.137  Sum_probs=136.3

Q ss_pred             CCCCceEEEEeeeCCCCC-CeeEE-EeCCEEccCCCcEEEccCCcEEEccCCCCCCE-EEEEEEEcCCCCcee-eEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK-PKFVW-KKDGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHGMDES-KGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-p~i~W-~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~-~~~l~v   77 (626)
                      +.+|++++|.|.+.+ |. |.|.| ++||..+..+.++.+..++.|.|.+++.+|+| .|+|.|.|..+...+ .+.|.|
T Consensus       103 ~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V  181 (290)
T 2o26_X          103 GKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKV  181 (290)
T ss_dssp             EETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEE
T ss_pred             EecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEE
Confidence            468999999999996 77 89999 57999998878888877889999999999999 999999998555333 578888


Q ss_pred             E----eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEe----ccccCCccCCCeeEecCCeEEEeec
Q psy12061         78 L----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNA  149 (626)
Q Consensus        78 ~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~  149 (626)
                      .    .+|.+ ...+....+.+|++++|.|.+.+.|.|. .+.|+++|..+    .................+.|.|.++
T Consensus       182 ~~~~~~~P~i-~~~~~~~~v~~G~~v~l~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  259 (290)
T 2o26_X          182 REAIKAIPVV-SVPETSHLLKKGDTFTVVCTIKDVSTSV-NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA  259 (290)
T ss_dssp             ECCCCSCCEE-ECSCSBCCCCTTCCEEEEEEEEESSTTC-EEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSC
T ss_pred             EeCCCCCCcc-ccCCCcceEecCCcEEEEEEEecCCcce-eEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCC
Confidence            7    34544 3456667899999999999999998874 46999998874    2211000000001234568999999


Q ss_pred             CCCCCEeEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        150 SFADAGEYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      +.+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       260 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          260 RVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             CSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             CcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            9999999999999999999999999988765

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.89  E-value=2.9e-23  Score=182.65  Aligned_cols=169  Identities=14%  Similarity=0.248  Sum_probs=122.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEE--ccCCcEEEccCCCCCCEEEEEEEEcCCCC--ceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--FENGNLLISPVSRDDSGIYSCTATNVHGM--DESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~--~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~v   77 (626)
                      |.+|++++|.|.+.+ |.+.+.|+|+|..+....+...  ..+++|.|.+++.+|+|.|+|.|.|..|.  ......|.|
T Consensus        16 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V   94 (196)
T 3p2t_A           16 ISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVM   94 (196)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEE
T ss_pred             CCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEe
Confidence            468999999999998 7789999999988754322111  22357999999999999999999999883  345577888


Q ss_pred             EeC--CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         78 LHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        78 ~~~--p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                      ...  ++.+...+. ..+.+|++++|.|.+.+.+   ..+.|+|+|..+.......  ........+.|.|.+++.+|+|
T Consensus        95 ~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~---~~~~w~k~g~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G  168 (196)
T 3p2t_A           95 TGAYSKPTLSALPS-PLVTSGKSVTLLCQSRSPM---DTFLLCKERAAHPLLCLRS--EHGAQQHQAEFPMSPVTSVHGG  168 (196)
T ss_dssp             ECSSCCCEEEEESC-SEECTTCCEEEEEEEEEEE---EEEEEEETTCCCGGGSEEE--EEEEEEEEEEEEECSCCGGGCE
T ss_pred             cCCCCCCEEEeCCc-ceecCCCeEEEEEecCCCC---CEEEEEeCCCcccceeecc--cccccCcceEEEeCCCcccCCC
Confidence            642  233333333 3789999999999998854   2679999998775431000  0011234578999999999999


Q ss_pred             eEEEEEEeCCC-----ceEEEEEEEEe
Q psy12061        156 EYECVVKSTVG-----KISTKTTVIVE  177 (626)
Q Consensus       156 ~Y~C~a~n~~g-----~~~~~~~l~v~  177 (626)
                      .|+|.|.|..+     ..+..+.|.|.
T Consensus       169 ~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          169 TYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             eEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99999999876     23445555553

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=1.8e-22  Score=175.90  Aligned_cols=163  Identities=17%  Similarity=0.273  Sum_probs=125.5

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      |.+|++++|.|.+.|.|.|  .+.|+|+|..+.......  ....|.|.  +.+|+|.|+|.|.|   .....+.|.|..
T Consensus        10 v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~--~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~l~V~~   82 (184)
T 3b5h_A           10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG--QKTEFKVD--SDDQWGEYSCVFLP---EPMGTANIQLHG   82 (184)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC--SEEEEEEC--GGGCCEEEEEEEES---TTSCEEEEEECC
T ss_pred             EecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC--CcEEEEEe--chhhCeEEEEEEEC---CcCcEEEEEEec
Confidence            5689999999999988777  999999999987543211  12246666  68999999999998   334677888887


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccC-CcceeEEEee---CCEEeccccCCccCCCeeEe----cCCeEEEeecC-
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTH---NGVRIGNMDLNELETPNINI----DGGLLEITNAS-  150 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~---~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~-  150 (626)
                      +|.+.. .+....+..|++++|.|.+.+.| .|  .+.|++   ++..+....    ...++.+    ....|.|.+++ 
T Consensus        83 ~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~--~i~W~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~  155 (184)
T 3b5h_A           83 PPRVKA-VKSSEHINEGETAMLVCKSESVPPVT--DWAWYKITDSEDKALMNG----SESRFFVSSSQGRSELHIENLNM  155 (184)
T ss_dssp             SCCCEE-SCSEEEECTTSCEEEEEECCCSSCCC--EEEEEECCSSSCEECCTT----GGGTEEEEEETTEEEEEECSCCT
T ss_pred             CCceee-cCCCcEEcCCCcEEEEEEECCCCCCC--eEEEEEcCCCCCEEeecC----CCCEEEEEecCCeeEEEEeeccc
Confidence            887665 45778899999999999999998 55  569999   554443211    0122222    22489999999 


Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      .+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          156 EADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cccCceEEEEEEeCCCcceEEEEEEEec
Confidence            8999999999999999999999988864

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.89  E-value=2.6e-22  Score=193.10  Aligned_cols=247  Identities=14%  Similarity=0.198  Sum_probs=162.6

Q ss_pred             CCCCceEEEEeeeCCC----CCCeeEEEeCC--E-------------Ec--cCCCcEEEc----cCCcEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAA----PKPKFVWKKDG--N-------------II--GSGGRRKIF----ENGNLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~----p~p~i~W~~~~--~-------------~i--~~~~~~~~~----~~g~L~i~~v~~~d~G   56 (626)
                      +.+|++++|.|.+.+.    |.+.|.|+|++  .             .+  ...+|+.+.    .+++|.|.+++.+|+|
T Consensus        26 v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G  105 (331)
T 3u83_A           26 GFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEG  105 (331)
T ss_dssp             EETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGGGCE
T ss_pred             EEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcccCc
Confidence            5789999999999886    44589999954  1             11  234677765    3457999999999999


Q ss_pred             EEEEE-EEcCCCCceeeEEEEEEeCCceee-eCCCceEEecC---CcEEEEEE-ecccCCcceeEEEeeCCEEeccccCC
Q psy12061         57 IYSCT-ATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAH---RNLQLRCS-AHTEELLDVAYIWTHNGVRIGNMDLN  130 (626)
Q Consensus        57 ~Y~C~-a~n~~g~~~~~~~l~v~~~p~~~~-~~~~~~~v~~g---~~~~l~C~-~~~~p~p~~~i~W~~~~~~~~~~~~~  130 (626)
                      .|+|. +.|..|.....+.|.|..+|.+.. ..+....+.+|   +.++|.|. +.+.|.|  .+.|++++.........
T Consensus       106 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~~~~~  183 (331)
T 3u83_A          106 VYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS--VVSWETRLKGEAEYQEI  183 (331)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCC--EEEEEESSCCEEEEEEE
T ss_pred             EEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCc--eEEEEcCCCCcccccee
Confidence            99998 556677777888999988887643 35677888999   88999997 8888876  56899953222111000


Q ss_pred             ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEE------EEeccceEEEEecCC
Q psy12061        131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVV------EVHKTSATIQWTDGA  204 (626)
Q Consensus       131 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~------~~~~~~~~l~W~~~~  204 (626)
                      ......+ ...+.|.|.++...|+|.|+|.|.|..|..+..+.|.|..+|..    .+.      ......+.|.|..  
T Consensus       184 ~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~----~~~~~~~~~~~~g~~~~l~C~~--  256 (331)
T 3u83_A          184 RNPNGTV-TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEV----TIEGFDGNWYLQRMDVKLTCKA--  256 (331)
T ss_dssp             ECTTSCE-EEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEE----EEECCCSCCBTTCCCEEEEEEE--
T ss_pred             ECCCCcE-EEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeE----EEecCCCceEeCCCeEEEEEeC--
Confidence            0001111 12346888888999999999999999999888888888765531    111      0112344444442  


Q ss_pred             CCCCcccEEEEEEeecCC-CCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        205 TNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       205 ~~~~~~~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                                 ...+... ..|.+.+..+....  . .....+.+...+...+.+.|+|.|.|..|..
T Consensus       257 -----------~g~p~p~~i~W~~~~~~~~~~~--~-~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~  310 (331)
T 3u83_A          257 -----------DANPPATEYHWTTLNGSLPKGV--E-AQNRTLFFKGPINYSLAGTYICEATNPIGTR  310 (331)
T ss_dssp             -----------EEESCCCEEEEEETTBSCCTTE--E-EETTEEEECSCCCGGGCEEEEEEEEETTEEE
T ss_pred             -----------cCCCCCCEEEEEECCCcccccc--e-ecCcEEEEeCCCccccCeEEEEEEEeccccc
Confidence                       1111112 23433332221110  0 0122456651388999999999999999865

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.89  E-value=3.8e-22  Score=190.29  Aligned_cols=243  Identities=15%  Similarity=0.195  Sum_probs=151.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC-----CceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG-----MDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|. .+.+.|+|+|..+... ......+++|.|.+++.+|+|.|+|.|.|..+     .......|.
T Consensus        35 v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~  112 (316)
T 3vh8_G           35 VPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI-FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIM  112 (316)
T ss_dssp             EETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH-HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEE
T ss_pred             cCCCCCEEEEEEccCC-CceEEEEeCCCcccee-ecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEE
Confidence            4689999999999988 6899999999876432 11122356899999999999999999987433     234456777


Q ss_pred             EEeCC--ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee--EecCCeEEEeecCCC
Q psy12061         77 VLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI--NIDGGLLEITNASFA  152 (626)
Q Consensus        77 v~~~p--~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~  152 (626)
                      |...+  +.+...|... +.+|++++|.|.+.+.+ +  .+.|+|+|..+.....    ....  ....+.|.|.+++.+
T Consensus       113 V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~~~-~--~~~w~k~g~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~  184 (316)
T 3vh8_G          113 VTGNHRKPSLLAHPGPL-VKSGERVILQCWSDIMF-E--HFFLHKEGISKDPSRL----VGQIHDGVSKANFSIGPMMLA  184 (316)
T ss_dssp             EECSSCCCEEEEESCSE-EETTCCEEEEEEESSCC-S--EEEEEETTCCSCCEEE----ECEEETTEEEEEEEECSCCGG
T ss_pred             EecCCCCCeEEecCCCc-cCCCCeEEEEEcCCCCC-c--EEEEEECCCcccccee----eeeecCCCceEEEEECCCChh
Confidence            76532  2233334343 88999999999996543 2  5689999987743210    0111  124568999999999


Q ss_pred             CCEeEEEEEEeCCCc-----eEEEEEEEEeCCCCCCCceEEE----EEeccceEEEEecCCCCCCcccEEEEEEeecCCC
Q psy12061        153 DAGEYECVVKSTVGK-----ISTKTTVIVEGPPGLPGGVQVV----EVHKTSATIQWTDGATNGRPITHYKIIARTNWNS  223 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~-----~~~~~~l~v~~~P~~p~~~~~~----~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~  223 (626)
                      |+|.|+|.|.|..|.     .+....|.|...+.+| .+...    ......+.|.|....    +...  +.+..++..
T Consensus       185 D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p-~i~~~~~~~v~~G~~v~L~C~~~~----~~~~--~~W~k~g~~  257 (316)
T 3vh8_G          185 LAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP-SLSAQPGPKVQAGESVTLSCSSRS----SYDM--YHLSREGGA  257 (316)
T ss_dssp             GCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCC-EEEEESCSCCCTTSCCEEEEEESS----CCSE--EEEEETTSS
T ss_pred             hCceEEEEEecCCCCccccCCCCCEEEEecCCCCCC-eEEeCCCCeecCCCcEEEEEECCC----CCcE--EEEEECCCc
Confidence            999999999998874     2566778887755554 22221    123566778887531    1112  222222221


Q ss_pred             CceEeecceeeeeeeccCC--ceeEEEEeeccCCceEEEEEEEecCCcc
Q psy12061        224 TWFNVSEHVIGKEVDRYTG--RKEASIENVLVPWSTYEFKVIAGNELGY  270 (626)
Q Consensus       224 ~w~~~~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~y~~~v~a~n~~g~  270 (626)
                      ......      ......+  ...+.|.+ +.  +.+.|+|.|.|..+.
T Consensus       258 ~~~~~~------~~~~~~~~~~~~L~i~~-v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          258 HERRLP------AVRKVNRTFQADFPLGP-AT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             CCEEEE------CEECTTSCEEEEEECC--------CEEEEEEEBTTBT
T ss_pred             CCCcee------ceeccCCceeEEEEcCC-cC--CCEEEEEEeecCCCc
Confidence            110000      0000011  12444444 66  899999999998764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.89  E-value=1.2e-22  Score=219.30  Aligned_cols=255  Identities=16%  Similarity=0.128  Sum_probs=127.8

Q ss_pred             CCCC--ceEEEEeeeCCCCCCeeEEEeC--CEEccCC-CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEE
Q psy12061          2 AGEG--GNVTIFCNPEAAPKPKFVWKKD--GNIIGSG-GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRL   75 (626)
Q Consensus         2 ~~~G--~~~~l~C~~~g~p~p~i~W~~~--~~~i~~~-~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l   75 (626)
                      +.+|  +.++|.|.+.+ |.+.+.|+|+  +..+..+ .+........|.|.+++.+|+|.|+|.|.+..+...+. ..+
T Consensus       138 v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~  216 (772)
T 3v2a_R          138 ITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV  216 (772)
T ss_dssp             EESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEE
T ss_pred             EecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEE
Confidence            4578  88999999987 7889999997  6665443 33333345579999999999999999999865443333 333


Q ss_pred             EEEe--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccC-----CCeeEecCCeEEEee
Q psy12061         76 IVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE-----TPNINIDGGLLEITN  148 (626)
Q Consensus        76 ~v~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~  148 (626)
                      .+..  .|.+...++....+.+|++++|.|.+.+.+.+.+.+.|++++..+.........     ..........|.|.+
T Consensus       217 ~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  296 (772)
T 3v2a_R          217 VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG  296 (772)
T ss_dssp             EEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESS
T ss_pred             EEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECc
Confidence            3432  223344455568999999999999999876666788999999886543210000     002223456899999


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCce----EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCC
Q psy12061        149 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV----QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST  224 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~----~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~  224 (626)
                      ++.+|+|.|+|.+.|..|..+..+.|.|..+|......    .........+.|.|....   .+          .....
T Consensus       297 v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~---~p----------~~~v~  363 (772)
T 3v2a_R          297 VTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG---YP----------PPEIK  363 (772)
T ss_dssp             CCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------------------------------
T ss_pred             CCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEee---eC----------CCeEE
Confidence            99999999999999999998999999999877543211    122233445666665321   11          11223


Q ss_pred             ceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCC
Q psy12061        225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP  273 (626)
Q Consensus       225 w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~  273 (626)
                      |.+.+..+..  ...+.....+.+.. +...+.+.|+|.|.|..|....
T Consensus       364 W~~~g~~l~~--~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~  409 (772)
T 3v2a_R          364 WYKNGIPLES--NHTIKAGHVLTIME-VSERDTGNYTVILTNPISKEKQ  409 (772)
T ss_dssp             -------------------------------------------------
T ss_pred             EEECCEeCCC--CceEccceeEEEec-CChhcCceEEEEEEECCcCeEE
Confidence            4433322211  01111223556655 8899999999999999886543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.89  E-value=9.1e-23  Score=179.81  Aligned_cols=167  Identities=15%  Similarity=0.243  Sum_probs=118.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCC--cEEEccCCcEEEccCCCCCCEEEEEEEEcCC-C--CceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPVSRDDSGIYSCTATNVH-G--MDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~--~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~-g--~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|. .+.|+|+|..+....  +.....+++|.|.+++.+|+|.|+|.|.|.. |  .....+.|.
T Consensus        16 v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~   94 (198)
T 1ugn_A           16 ITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELV   94 (198)
T ss_dssp             EETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEE
T ss_pred             ccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEE
Confidence            468999999999999876 799999998774221  1112345689999999999999999999987 5  345668888


Q ss_pred             EEeC--CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCCeEEEeecCC
Q psy12061         77 VLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNASF  151 (626)
Q Consensus        77 v~~~--p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~  151 (626)
                      |...  ++.+...+ ...+.+|++++|.|.+.+. .+  .+.|+|+|..+......    .....   ..+.|.|.+++.
T Consensus        95 V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~--~v~W~k~g~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~  166 (198)
T 1ugn_A           95 VTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FD--GFILCKEGEDEHPQCLN----SQPHARGSSRAIFSVGPVSP  166 (198)
T ss_dssp             EECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CS--EEEEEEC------CEEE----C------CCEEEEEECCCCT
T ss_pred             EcccccCCccccCC-ccccCCCCcEEEEEecCCC-Cc--EEEEEECCCccCCcccc----ccccCCCcceeEEEecccCc
Confidence            8772  22233223 4678899999999999988 34  66999999887543210    00111   236899999999


Q ss_pred             CCCEeEEEEEEeCCCc-----eEEEEEEEEe
Q psy12061        152 ADAGEYECVVKSTVGK-----ISTKTTVIVE  177 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g~-----~~~~~~l~v~  177 (626)
                      +|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       167 ~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          167 SRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             TSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             ccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            9999999999998763     2445566554

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.88  E-value=6e-23  Score=178.31  Aligned_cols=145  Identities=17%  Similarity=0.207  Sum_probs=113.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC--ceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM--DESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~   79 (626)
                      |.+|++++|.|.+.+ |.+.+.|+|+|..       ....++.|.|.+++.+|+|.|+|.|.|..|.  ....+.|.|..
T Consensus        19 v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           19 VPLEKPVTLRCQGPP-GVDLYRLEKLSSS-------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             EETTCCEEEEEECST-TCSEEEEEETTTC-------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred             ccCCCcEEEEEeCCC-CCCEEEEEECCcc-------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence            568999999999988 7889999999865       2235678999999999999999999998764  23456777754


Q ss_pred             ---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         80 ---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        80 ---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                         +|.+... | ...+.+|++++|.|.+.+.+ +  .+.|+|+|..+...       .+.....+.|.|.+++.+|+|.
T Consensus        91 ~~~~p~i~~~-p-~~~v~~G~~v~l~C~~~~~~-~--~~~w~k~g~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~  158 (184)
T 2gi7_A           91 VFAKPSLSAQ-P-GPAVSSGGDVTLQCQTRYGF-D--QFALYKEGDPAPYK-------NPERWYRASFPIITVTAAHSGT  158 (184)
T ss_dssp             SSCCCEEEEE-C-CCSSCCTTCEEEEEECSSCC-C--EEEEEECCCCTTSC-------CCCEEEEESSSEEEETTCCSEE
T ss_pred             cCCCCEEEeC-C-CceecCCCcEEEEEEcCCCC-c--EEEEEECCCcCcce-------ecCCCceEEEEEccCCccCCeE
Confidence               3334333 3 45678999999999987665 2  67999999887542       1223356689999999999999


Q ss_pred             EEEEEEeCCC
Q psy12061        157 YECVVKSTVG  166 (626)
Q Consensus       157 Y~C~a~n~~g  166 (626)
                      |+|.|.|..+
T Consensus       159 Y~C~a~n~~~  168 (184)
T 2gi7_A          159 YRCYSFSSRD  168 (184)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999999865

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.88  E-value=9.4e-22  Score=197.20  Aligned_cols=168  Identities=17%  Similarity=0.238  Sum_probs=118.9

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++++|.|.+.+.|.    +.|.|+|++  ..+            ...+|+.+..++   +|.|.+++.+|+|.|+|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   92 (438)
T 1qgc_4           13 VSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYC   92 (438)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCeeEEE
Confidence            578999999999999887    499999963  322            123566665432   69999999999999999


Q ss_pred             EEEcCCCCc-eeeEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC-----Cc
Q psy12061         61 TATNVHGMD-ESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-----NE  131 (626)
Q Consensus        61 ~a~n~~g~~-~~~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-----~~  131 (626)
                      .|.|..+.. ...+.|.|..   +|.+...++.. ....|+.++|.|.+.+.+++.++|.|+|||..+.....     ..
T Consensus        93 ~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  171 (438)
T 1qgc_4           93 QQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD  171 (438)
T ss_dssp             EECSSTTCCBCCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCC
T ss_pred             EEecCCCccccCceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecccccc
Confidence            999988753 3456777753   44444333332 23468899999999884333357799999999865410     00


Q ss_pred             cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061        132 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus       132 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      .....+ ...+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus       172 ~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  210 (438)
T 1qgc_4          172 SKDSTY-SMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV  210 (438)
T ss_dssp             TTTCCE-EEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred             CCCCcE-EEEEEEEEeCcccCCCCeEEEEEEecccCCcee
Confidence            001111 123579999999999999999999998875333

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.88  E-value=1.3e-22  Score=186.69  Aligned_cols=172  Identities=17%  Similarity=0.219  Sum_probs=127.3

Q ss_pred             CCCCceEEEEeeeCC---CCCCeeEEEeCCEEc------------------------------cCCCcEEEcc--CCcEE
Q psy12061          2 AGEGGNVTIFCNPEA---APKPKFVWKKDGNII------------------------------GSGGRRKIFE--NGNLL   46 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g---~p~p~i~W~~~~~~i------------------------------~~~~~~~~~~--~g~L~   46 (626)
                      |.+|++++|.|.+.+   .|.|.|.|+|++...                              ...+|..+..  +.+|.
T Consensus        14 v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L~   93 (250)
T 2fbo_J           14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLR   93 (250)
T ss_dssp             ECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCEE
T ss_pred             EecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceEE
Confidence            578999999999987   788999999987543                              1234555544  34799


Q ss_pred             EccCCCCCCEEEEEEEEcCCCCc-----eeeEEEEEEeC---CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEe
Q psy12061         47 ISPVSRDDSGIYSCTATNVHGMD-----ESKGRLIVLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT  118 (626)
Q Consensus        47 i~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~---p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~  118 (626)
                      |.+++.+|+|.|+|.|.|..+..     ...+.|.|..+   |.+...++....+.+|++++|.|.+.+.|.|  .|.|+
T Consensus        94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p--~v~W~  171 (250)
T 2fbo_J           94 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA--NVTWY  171 (250)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC--EEEEE
T ss_pred             EeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC--eeEEE
Confidence            99999999999999999987753     34677888664   3333445667888899999999999998887  66999


Q ss_pred             eCCEEeccccCC-----------------ccCCCeeEe-cCCeEEEeecCCCCCEeEEEEEEeCCC---ceEEEEEEE
Q psy12061        119 HNGVRIGNMDLN-----------------ELETPNINI-DGGLLEITNASFADAGEYECVVKSTVG---KISTKTTVI  175 (626)
Q Consensus       119 ~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~a~n~~g---~~~~~~~l~  175 (626)
                      |++..+....-.                 .....+... ..+.|.|.+++.+|+|.|+|.|.|..|   .....+.|.
T Consensus       172 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          172 TGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             EEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             eCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEe
Confidence            999877542100                 000112222 457999999999999999999999655   444454443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.88  E-value=8.3e-23  Score=181.99  Aligned_cols=168  Identities=14%  Similarity=0.134  Sum_probs=120.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEE--EccCC--cEEEccCCCCCCEEEEEEEEcCCCCc--eeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFENG--NLLISPVSRDDSGIYSCTATNVHGMD--ESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~--~~~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l   75 (626)
                      |.+|++++|.|.+.+ |.+.+.|+|+|..+....+..  ...++  +|.|.+++.+|+|.|+|.|.|..|..  .....|
T Consensus        20 v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l   98 (218)
T 1uct_A           20 IPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL   98 (218)
T ss_dssp             EETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEE
T ss_pred             cCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEE
Confidence            568999999999987 678999999987664322211  12345  89999999999999999999987643  334677


Q ss_pred             EEEe--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         76 IVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        76 ~v~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                      .|..  .++.+...| ...+.+|++++|.|.+.+.|.+  .+.|+|+|..+...       .......+.|.|.+++.+|
T Consensus        99 ~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~--~~~W~k~g~~~~~~-------~~~~~~~~~L~I~~v~~~D  168 (218)
T 1uct_A           99 VVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFD--RFSLAKEGELSLPQ-------HQSGEHPANFSLGPVDLNV  168 (218)
T ss_dssp             EEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCS--EEEEEETTCSSCCS-------EEECSSSEEEECCSCCGGG
T ss_pred             EEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCC--EEEEEECCCccccc-------ccCCCccCEEEEccCCccc
Confidence            7765  223333334 4578999999999976666654  67999999876531       1122356789999999999


Q ss_pred             CEeEEEEEEeCCC-----ceEEEEEEEEeCCC
Q psy12061        154 AGEYECVVKSTVG-----KISTKTTVIVEGPP  180 (626)
Q Consensus       154 ~g~Y~C~a~n~~g-----~~~~~~~l~v~~~P  180 (626)
                      +|.|+|.|.|..+     ..+..+.|.|.+.+
T Consensus       169 ~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          169 SGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             CEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             CEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            9999999998642     23556677776644

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.88  E-value=2.6e-22  Score=186.07  Aligned_cols=225  Identities=13%  Similarity=0.143  Sum_probs=153.7

Q ss_pred             CCCCceEEEEeeeCC-CCCC--eeEEEeCCEEccCCCcEEEccCCcEEEccC---CCCCCEE--EEEEEEcCCCCceeeE
Q psy12061          2 AGEGGNVTIFCNPEA-APKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPV---SRDDSGI--YSCTATNVHGMDESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p--~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v---~~~d~G~--Y~C~a~n~~g~~~~~~   73 (626)
                      +.+|++++|.|.+.| .|.|  +|.|+|||..+..   .....++.|.|..+   +.+|+|.  |+|.|.|..|.....+
T Consensus        15 v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~   91 (265)
T 2oz4_A           15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ   91 (265)
T ss_dssp             EETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             EecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEE
Confidence            578999999999999 7877  9999999999864   23334556777766   7788885  9999999999988889


Q ss_pred             EEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         74 RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        74 ~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                      .|.|...|..... +....+.+|++++|.|.+.  |.|  .+.|  +|..+....           ..+.|.|..+...|
T Consensus        92 ~l~V~~~p~p~~~-~~~~~v~~G~~v~l~C~~~--p~~--~i~W--~g~~~~~~~-----------~~~~l~i~~~~~~~  153 (265)
T 2oz4_A           92 TVTIYSFPAPNVI-LTKPEVSEGTEVTVKCEAH--PRA--KVTL--NGVPAQPLG-----------PRAQLLLKATPEDN  153 (265)
T ss_dssp             EEEEECCCCCEEE-ESCSEEETTCEEEEEEECC--TTS--EEEE--SSCSSSCCS-----------SEECCEEECCGGGT
T ss_pred             EEEEeCCCCceee-cCCceecCCCcEEEEEEcc--CCC--EEEE--CCEEccCCC-----------CcEEEEEccccccC
Confidence            9999874432222 3456788999999999998  554  5689  877774321           23568899999999


Q ss_pred             CEeEEEEEEe-CCCceE---EEEEEEEeCCCCCCCce---EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCce
Q psy12061        154 AGEYECVVKS-TVGKIS---TKTTVIVEGPPGLPGGV---QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF  226 (626)
Q Consensus       154 ~g~Y~C~a~n-~~g~~~---~~~~l~v~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~  226 (626)
                      .|.|+|.|.| ..|...   ..+.|.|..+|......   .........+.|.|...   +.+.          ....|.
T Consensus       154 ~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~---g~P~----------p~i~W~  220 (265)
T 2oz4_A          154 GRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW---GNPL----------PELKCL  220 (265)
T ss_dssp             TEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCE---EESC----------CEEEEE
T ss_pred             CceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECc---cCCC----------CeEEEE
Confidence            9999999985 447665   67788888777542211   12223345555655521   1111          112233


Q ss_pred             EeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      +......      ..+  ..  .. +...+.+.|+|.|.|..|..
T Consensus       221 ~~~~~~~------~~g--~~--~~-v~~~d~G~Y~C~a~N~~G~~  254 (265)
T 2oz4_A          221 KDGTFPL------PIG--ES--VT-VTRDLEGTYLCRARSTQGEV  254 (265)
T ss_dssp             ETTTEEC------CTT--SC--EE-CCGGGCEEEEEEEEETTEEE
T ss_pred             ECCcccC------CCC--cE--EE-eehhhCeEEEEEEECCCCcE
Confidence            3222100      011  11  22 77789999999999998854

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.6e-21  Score=174.35  Aligned_cols=181  Identities=25%  Similarity=0.363  Sum_probs=146.1

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      .|.++.+..|++++|.|.+.+.|.|  .+.|+|+|..+.....     .++.+    ..+.|.|.+++.+|+|.|+|.|.
T Consensus        24 ~p~~~~~~~G~~v~l~C~~~g~p~p--~i~W~~~g~~l~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           24 GPVAVYTWEGNQVNITCEVFAYPSA--TISWFRDGQLLPSSNY-----SNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             CCSEEEECTTCCEEEEEEEEEESCC--EEEEEETTEESSCSSS-----CSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             CCceEEEECCCCEEEEEEEeecCCC--EEEEEECCeECCCCCC-----ccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            5677899999999999999999987  5589999999875421     22332    25689999999999999999999


Q ss_pred             eCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCC-CCCCcccEEEEEEeecCCCCceEeecceeeeeeeccC
Q psy12061        163 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYT  241 (626)
Q Consensus       163 n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~  241 (626)
                      |..|..+..+.|.+..+|.+|..+.+ .....++.|.|+.+. +++.++..|.|+++..+...|..........     .
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~-----~  170 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA-----S  170 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHH-----H
T ss_pred             ECCCceEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccc-----c
Confidence            99999999999999999999988877 567788999999765 5667899999999999888887653221100     1


Q ss_pred             CceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccC
Q psy12061        242 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT  282 (626)
Q Consensus       242 ~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~  282 (626)
                      ....+.+.+ |.+++.|.|+|.|.|..|.+.++... .+.+
T Consensus       171 ~~~~l~i~~-L~~~~~y~~~~~A~N~~G~s~~S~~~-~v~T  209 (215)
T 3mtr_A          171 MEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKT  209 (215)
T ss_dssp             HHTEEEEEC-CCTTCEEEEEEEEEESSCBCCCCCCE-EEEC
T ss_pred             ccccEEECC-CCCCCEEEEEEEEEeCCcccCcccce-eeEe
Confidence            113566766 99999999999999999999888765 3444

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=6.2e-22  Score=169.92  Aligned_cols=152  Identities=21%  Similarity=0.333  Sum_probs=121.4

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.+.| .+.+.|+|+|..+..+       .+.|.|.+++.+|+|.|+|.|.|..+  ...+.|.|..+
T Consensus        16 v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-------~~~~~~~~~~~~d~G~Y~C~~~~~~~--s~~~~l~v~~~   86 (170)
T 3ry4_A           16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------TQPSYRFKANNNDSGEYTCQTGQTSL--SDPVHLTVLFE   86 (170)
T ss_dssp             EETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-------CSSEEEEECCGGGCEEEEEEETTSBC--CCCEEEEEECC
T ss_pred             EECCCcEEEEEEecCCCCcceEEEEECCeEcccC-------ccceEEEecccccCeEEEEEEeCCCc--eEeEEEEEECC
Confidence            56899999999999987 5799999999998654       34577889999999999999997543  44678888776


Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |....  +....+.+|++++|.|.+.+.+++ ..+.|+++|..+....           .++.|.|.+++.+|+|.|+|.
T Consensus        87 ~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~  152 (170)
T 3ry4_A           87 WLVLQ--TPHLEFQEGETIMLRCHSWKDKPL-VKVTFFQNGKSQKFSH-----------LDPTFSIPQANHSHSGDYHCT  152 (170)
T ss_dssp             SEEEE--CSCSEECTTCCEEEEEEEGGGCCE-EEEEEEETTEEEEEES-----------SCCEEEESSCCGGGCEEEEEE
T ss_pred             ceEec--CCCceeecCCeEEEEEECCCCCCC-ceEEEEECCeEccccC-----------CCCeEEEEeccccCCEEEEEE
Confidence            65443  335678899999999999654432 4679999999875321           456899999999999999999


Q ss_pred             EEeCCCc-eEEEEEEEE
Q psy12061        161 VKSTVGK-ISTKTTVIV  176 (626)
Q Consensus       161 a~n~~g~-~~~~~~l~v  176 (626)
                      |.|..|. .+..+.|.|
T Consensus       153 a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          153 GNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEETTEEEECCCEEEEE
T ss_pred             EEeCcCccccccEEEEE
Confidence            9999986 455666665

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.88  E-value=3.1e-20  Score=182.92  Aligned_cols=454  Identities=12%  Similarity=0.043  Sum_probs=254.0

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      |.++.+....--.+.|.+.......-.......   +...     ...-+...+..+.|..+..+|- .++..  .-.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~   75 (488)
T 2q7n_A            7 DKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDIC---IKDR-----FHSCHPLETTNVKIPALSPGDH-EVTIN--YLNGF   75 (488)
T ss_dssp             --CCCCEESSSSEEEEECCCCSSSCCSCEEEEE---EESS-----SEEEEECSSSEEEEECCCSSCE-EEEEE--ESSSC
T ss_pred             CccceeEecCceEEEEeeeCcCccCCCceEEEE---EecC-----CceeEEeccceeEcccCCCCcc-eEEEe--eccCc
Confidence            445555556666777776553322111111111   1100     0123445677999999988883 44433  23333


Q ss_pred             eEEEEEEEEe-----CCCCCCCceEEEEE-eccceEEEEecCCCC-CCc-ccEEEEEEeecCC--CCceEeecceeeeee
Q psy12061        168 ISTKTTVIVE-----GPPGLPGGVQVVEV-HKTSATIQWTDGATN-GRP-ITHYKIIARTNWN--STWFNVSEHVIGKEV  237 (626)
Q Consensus       168 ~~~~~~l~v~-----~~P~~p~~~~~~~~-~~~~~~l~W~~~~~~-~~~-~~~y~v~~~~~~~--~~w~~~~~~~~~~~~  237 (626)
                         ...+++.     ..|.+|.+|.+... ....+.|+|..+... ... -..|.|++.....  ..|... .....   
T Consensus        76 ---~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~-~~~~~---  148 (488)
T 2q7n_A           76 ---QSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVL-LNTML---  148 (488)
T ss_dssp             ---EEEEEECSTTCEECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCCEE-CCEEC---
T ss_pred             ---eeEEEEecCccccCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEEEE-EEEEe---
Confidence               3334433     34889999988655 468999999865432 111 2578888655433  223321 10000   


Q ss_pred             eccCCceeEEEEeec-cCCceEEEEEEEec----CCc---cCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEe
Q psy12061        238 DRYTGRKEASIENVL-VPWSTYEFKVIAGN----ELG---YGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE  309 (626)
Q Consensus       238 ~~~~~~~~~~i~~~l-~~~~~y~~~v~a~n----~~g---~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~  309 (626)
                      ...+......-..++ .....|.+++++..    -.|   ++.+|.+...-...+......|.+..+..+  ..++|...
T Consensus       149 ~~~~~~~~w~w~s~~pl~c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~t~i~v~P~~~~v~~G--s~vtl~C~  226 (488)
T 2q7n_A          149 SGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAG--SNMTICCM  226 (488)
T ss_dssp             SSSCBCCEEEEECSSCCSSSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCCCCSSCCEECTTCEEESS--CCCEEEEC
T ss_pred             cCCCceeEeeccCCCcccccceEEEEEEEeccccccCCCCCcCCCChhhcCCcCCCceEECCCCCEEcCC--CCEEEEEE
Confidence            000111233444422 33779999999986    233   444444421111112222234555444433  46777776


Q ss_pred             eCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcce--eEEEEEEEEecCCCCCCCCccEEEEccC
Q psy12061        310 PLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--TEYEVKVQAINDVGPGPESEVVTIFSAE  387 (626)
Q Consensus       310 ~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~--~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  387 (626)
                      ..  .    +    .|.|+..+... ...   . -+.....++|.++...  ..|.+  .+.+   .+... .....  .
T Consensus       227 a~--~----~----~I~W~~ng~~i-~~~---r-i~~~~~~L~I~nl~~sd~g~y~~--~C~~---~~~i~-~~~l~--v  283 (488)
T 2q7n_A          227 SP--T----K----VLSGQIGNTLR-PLI---H-LYGQTVAIHILNIPVSENSGTNI--IFIT---DDDVY-GTVVF--A  283 (488)
T ss_dssp             CS--S----C----EEEEEETTEEC-CCE---E-CSSSCEEEECCSCCCCCSSCEEE--EEEE---SSCEE-EEEEE--E
T ss_pred             CC--C----C----EEEEEECCEEC-chh---h-ccceEEEEEEeCCCcccCCcEEE--EEEc---CCeEE-EEEEE--e
Confidence            52  1    1    57777665211 100   1 1223456788888763  23444  3332   11111 11111  1


Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEE
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      ..|+.+|.++.+...+..++.++|+++.+.+.. +..+..|.|+|+..+....-............+.+..+..++.|.|
T Consensus       284 ~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~-G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f  362 (488)
T 2q7n_A          284 GYPPDVPQKLSCETHDLKEIICSWNPGRITGLV-GPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNF  362 (488)
T ss_dssp             ECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCC-TTSSCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEE
T ss_pred             eCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCC-CCCceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCccEEEE
Confidence            244458999999888889999999997653100 0136789999865432210000000002234456654444699999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI  547 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~  547 (626)
                      +|.|.|..|.++ + ...+.+...+++.||.++++...+.+++.|+|++  |...++.+.+|+|+|+..+...+. ....
T Consensus       363 ~V~A~N~~G~~~-S-~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~p--P~~~~g~~l~YeV~Yr~~~~~~w~-~~~~  437 (488)
T 2q7n_A          363 TLTGRNPLGQAQ-S-AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYL--PGNFTKINLLCQIEICKANSKKEV-RNAT  437 (488)
T ss_dssp             EEEEEETTEEEE-E-EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEE--EEECSSSEEEEEEEEBCTTSCCEE-EEEE
T ss_pred             EEEEEeCCCCcc-c-eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeC--CCCCCCcceEEEEEEEECCCCCce-EEEE
Confidence            999999998843 4 4666666667778999999988889999999995  344567889999999865443211 1111


Q ss_pred             eecCccceE--EecCCCCCceEEEEEEEEecCCCC---CCCCCcEEEeec
Q psy12061        548 IPVGNTLDA--DIVDLSPGKRYHMRVLAFSNGGDG---RMSSPAITFQMG  592 (626)
Q Consensus       548 ~~~~~~~~~--~l~~L~p~~~Y~~~V~a~~~~G~g---~~s~~~~~~~~~  592 (626)
                      ........+  .+.+|+|++.|.|+|+|.+ .|.|   ++|++. .|+|.
T Consensus       438 ~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v-~~~T~  485 (488)
T 2q7n_A          438 IRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEK-RHLTT  485 (488)
T ss_dssp             EECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCC-CBCCC
T ss_pred             EecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCE-eEECC
Confidence            111123445  9999999999999999999 8885   666443 45554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.88  E-value=9.4e-23  Score=177.12  Aligned_cols=143  Identities=15%  Similarity=0.273  Sum_probs=109.5

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEcc-CCCCCCEEEEEEEEcCCCCceeeEEEEEEe--
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISP-VSRDDSGIYSCTATNVHGMDESKGRLIVLH--   79 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--   79 (626)
                      .+|++++|.|.+.| |+ .|.|+|||..|..+      .+++|.|.+ ++.+|+|.|+|.|.|..|.......+.|..  
T Consensus        12 ~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~   83 (186)
T 1jbj_A           12 ISGTSVELTCPLDS-DE-NLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSAD   83 (186)
T ss_dssp             EETTEEEEECSSCC-CT-TCEEEETTEEECSC------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCC
T ss_pred             eCCcEEEEEEeCCC-CC-ceEEEECCEECCCC------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccc
Confidence            47999999999988 44 49999999999754      355799999 999999999999999999855555554433  


Q ss_pred             CCcee-------------------eeCCCce---EEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee
Q psy12061         80 GPSYY-------------------EQLPPKI---TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI  137 (626)
Q Consensus        80 ~p~~~-------------------~~~~~~~---~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~  137 (626)
                      +|...                   .......   .+.+|++++|.|.+   |.|  +|.|+|||..+....         
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p--~i~W~k~g~~i~~~~---------  149 (186)
T 1jbj_A           84 DAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDK--TIKWLKDGSIISPLN---------  149 (186)
T ss_dssp             CCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCS--CEEEEETTEECCCSS---------
T ss_pred             ccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCC--eEEEEECCEECcccC---------
Confidence            22100                   0000112   23499999999998   554  569999999986432         


Q ss_pred             EecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        138 NIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       138 ~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                       ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       150 -~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          150 -ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence             156789999999999999999999998875

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.88  E-value=2.4e-22  Score=189.26  Aligned_cols=175  Identities=19%  Similarity=0.191  Sum_probs=139.0

Q ss_pred             CCCCceEEEEeeeCCCCCCe-eEEEe-CCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEE-cCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-FVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT-NVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-i~W~~-~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.+.|.+. +.|++ ++..+..+.++.+..+++|.|.+++.+|+|.|+|.|. |..+.....+.|.|.
T Consensus       101 v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          101 VVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             EETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence            46899999999999987765 99986 8888888888888888899999999999999999999 555556677889998


Q ss_pred             e----CCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         79 H----GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        79 ~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                      .    +|.+. ..+....+.+|++++|.|.+.+ .|.+  .+.|++++..+........ ........+.|.|.+++.+|
T Consensus       181 ~~~~~~p~i~-~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d  256 (289)
T 3ejj_X          181 RVHPEPPQIK-LEPSKLVRIRGEAAQIVCSATNAEVGF--NVILKRGDTKLEIPLNSDF-QDNYYKKVRALSLNAVDFQD  256 (289)
T ss_dssp             SSCCCCCEEE-EESSSEECCSSSCEEEEEEEEESSSCC--EEEEEETTEECCCCEEEEE-CSSSEEEEEEEEESSCCSSS
T ss_pred             ECCCCCCeEE-ecCCceEEEeCCcEEEEEEeCCCCCce--EEEEEECCEEeeccCCccc-ccceEEeeEEEEEEeecccC
Confidence            3    44444 4566777789999999999998 5554  6699999998865321000 01112245689999999999


Q ss_pred             CEeEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      +|.|+|.|.|..|..++++.|.+..++
T Consensus       257 ~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          257 AGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             CEEEEEEEEcCCCCccccEEEEEEecc
Confidence            999999999999999999999987655

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.88  E-value=5.7e-21  Score=168.47  Aligned_cols=177  Identities=20%  Similarity=0.362  Sum_probs=138.8

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      ..+|  +|.++.+...+.+++.|+|+++..      +.+.+|.|+|+..+....... .........+.+.+|+|++.|.
T Consensus        21 ~~~P--~P~~l~~~~~~~~sv~lsW~~p~~------~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~   91 (203)
T 2gee_A           21 MEVP--QPTDLSFVDITDSSIGLRWTPLNS------STIIGYRITVVAAGEGIPIFE-DFVDSSVGYYTVTGLEPGIDYD   91 (203)
T ss_dssp             SCCC--CCEEEEEECCTTTCEEEEEECCSS------SSCCEEEEEEEESSSSSCCEE-EEEETTCCEEEECSCCTTCEEE
T ss_pred             ccCc--CCCccEEEecCCCEEEEEecCCCC------CCccEEEEEEEECCCCCCcee-EEcCCCccEEEeCCCCCCCEEE
Confidence            3455  688999999999999999998862      458899999987765433222 2334556679999999999999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccce
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT  546 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~  546 (626)
                      |+|+|.|..|.|..+   .+.+....|  +|.++++...+.+++.|+|++  |.  ++.+.+|.|+|+..+...  ....
T Consensus        92 ~~V~a~~~~g~s~~~---~~~t~~~~p--~P~~l~~~~~~~~sv~l~W~~--p~--~~~i~~Y~v~~~~~~~~~--~~~~  160 (203)
T 2gee_A           92 ISVYTVKNGGESTPT---TLTQQTAVP--PPTDLRFTNIGPDTMRVTWAP--PP--SIDLTNFLVRYSPVKNEE--DVAE  160 (203)
T ss_dssp             EEEEEESSSCBCCCE---EEEEECCCC--CCEEEEEEEEETTEEEEEEEC--CS--SCCCSEEEEEEEETTCGG--GCEE
T ss_pred             EEEEEEeCCCccccE---eeeecCCCc--CCCceEEEEcCCCEEEEEEcC--CC--CCCccEEEEEEEECCCCC--ccEE
Confidence            999999988876544   455555544  688999999999999999994  42  468999999988744321  1234


Q ss_pred             eeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       547 ~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      .......+.+.|.+|.|++.|.|+|+|+|..|.|+++
T Consensus       161 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          161 LSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             EEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCe
Confidence            4556788999999999999999999999999998865

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.88  E-value=2.3e-22  Score=189.71  Aligned_cols=244  Identities=15%  Similarity=0.219  Sum_probs=158.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.    |.|++++..     +..+..+   ++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        16 v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~   86 (292)
T 4dkd_C           16 VKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK   86 (292)
T ss_dssp             ECTTCCEEEEEECSSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEEC
T ss_pred             EcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEc
Confidence            5689999999999984    999976542     2233322   379999999999999999999998888888899998


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEe
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGE  156 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~  156 (626)
                      .+|......+....+.+|++++|.|.+.+ |.+...+.|+++ +..+...       .+.. ..++.|.|.+++.+|+|.
T Consensus        87 ~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~  158 (292)
T 4dkd_C           87 DPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRH-------TNYSFSPWHGFTIHRAKFIQSQD  158 (292)
T ss_dssp             CSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSS-------CCEECCSSSCCEETTCCGGGCSE
T ss_pred             CccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccC-------CcccccCCceEEECCCCHHHCeE
Confidence            88776566678899999999999999998 543346799987 5554332       2222 244569999999999999


Q ss_pred             EEEEEEeCCCce-EEEEEEEEeCCCC-CCCceEEEE-----EeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEee
Q psy12061        157 YECVVKSTVGKI-STKTTVIVEGPPG-LPGGVQVVE-----VHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS  229 (626)
Q Consensus       157 Y~C~a~n~~g~~-~~~~~l~v~~~P~-~p~~~~~~~-----~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~  229 (626)
                      |+|.+.|..|.. +..+.|.|...+. +| .+....     .....+.|.|.....   +. .+.+.+...+...-  ..
T Consensus       159 Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p-~i~~~~~~~~~~~g~~v~l~C~~~~~---~~-~~~~~w~~~~~~~~--~~  231 (292)
T 4dkd_C          159 YQCSALMGGRKVMSISIRLKVQKVIPGPP-ALTLVPAELVRIRGEAAQIVCSASSV---DV-NFDVFLQHNNTKLA--IP  231 (292)
T ss_dssp             EEEEECSTTSCEECCCEEEEEECCCCSSC-EEEEESSCBCCCSSSCEEEEEEEEES---SS-CCEEECCBSSCCCC--CC
T ss_pred             EEEEEEeCCCceeEEEEEEEEeCCCCCCC-eEEccCCceeEecCCCEEEEEEecCC---CC-ceEEEEeCCCcccc--cC
Confidence            999999988865 4478888886433 22 222211     234556666664211   11 12222222211000  00


Q ss_pred             cceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      .... .....+.....+.|.+ +...+.+.|+|.|.|..|..
T Consensus       232 ~~~~-~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~  271 (292)
T 4dkd_C          232 QQSD-FHNNRYQKVLTLNLDQ-VDFQHAGNYSCVASNVQGKH  271 (292)
T ss_dssp             BEEE-EETTEEEEEEEEEESS-CCTTSCEEEEEEEECSSCEE
T ss_pred             ccce-eccceeeeEEEEEECc-cChhcCeEEEEEEecCCCCc
Confidence            0000 0000011112455555 88999999999999999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.88  E-value=2.9e-22  Score=191.12  Aligned_cols=166  Identities=20%  Similarity=0.314  Sum_probs=129.7

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCCc-----EEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g~-----L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      +.+|++++|.|.+. |.|.|.+.|+|+|.++..+.++.+..++.     |.|.+++.+|+|.|+|.|.|..+.  ....+
T Consensus       119 v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~  196 (312)
T 2y23_A          119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTV  196 (312)
T ss_dssp             ECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE--EEEEE
T ss_pred             EeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce--EEEEE
Confidence            56899999999999 88999999999999998888777765432     999999999999999999865443  33333


Q ss_pred             EEE---------------------eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCC
Q psy12061         76 IVL---------------------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET  134 (626)
Q Consensus        76 ~v~---------------------~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~  134 (626)
                      .+.                     .+|.+...  ....+..|++++|.|.+.+.|.| ..+.|+|+|..+.....     
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~g~~~~~~~~-----  268 (312)
T 2y23_A          197 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY--LSWEVTGECNVLLKCKVANIKKE-THIVWYKDEREISVDEK-----  268 (312)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE--EEEEEETTTEEEEEEEEESCCSS-CEEEEEETTEEEEEECC-----
T ss_pred             EEcchhhhhhcccccccccchhhccCCceeec--ceEEEeCCCEEEEEEEEcCCCCC-CEEEEeeCCEECCCCCc-----
Confidence            331                     12433321  23788999999999999999876 25699999999975421     


Q ss_pred             CeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        135 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       135 ~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      ..+......|.|.+++.+|+|.|+|.|.|..|..+..+.|.++
T Consensus       269 ~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          269 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             C----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            1112233699999999999999999999999999999888764

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.88  E-value=2.3e-21  Score=170.94  Aligned_cols=185  Identities=15%  Similarity=0.194  Sum_probs=147.0

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      ++.+|.++.+...+.+++.|+|+++ ....+.++.+|.|+|+..+...|......    .....+.+.+|.|++.|.|+|
T Consensus         5 ~P~~P~~l~~~~~~~~sv~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~----~~~~~~~~~~L~p~t~Y~~~V   79 (197)
T 3lpw_A            5 TPGPPQDLKVKEVTKTSVTLTWDPP-LLDGGSKIKNYIVEKRESTRKAYSTVATN----CHKTSWKVDQLQEGCSYYFRV   79 (197)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECC-SCCTTSCCCEEEEEEEETTCSSCEEEEEE----ECSSEEEECCCCTTCEEEEEE
T ss_pred             CCCCCCCcEEEEecCCEEEEEEcCC-ccCCCCcccEEEEEEEECCCCccEEeecC----CCccEEEEcCCCCCCEEEEEE
Confidence            3468889998888899999999983 33444568999999998887777655432    234568899999999999999


Q ss_pred             EEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEE
Q psy12061        367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL  446 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~  446 (626)
                      +|.|..|.+.++....+.+....|. +|.++++...+.+++.|+|++|...+   ++.+.+|.|+|+..+...+....  
T Consensus        80 ~a~~~~g~~~~s~~~~~~t~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~~---~~~i~~Y~v~~~~~~~~~~~~~~--  153 (197)
T 3lpw_A           80 LAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPEHDG---GSRILGYIVEMQTKGSDKWATCA--  153 (197)
T ss_dssp             EEEETTEECCCEECSSCEESCCCCC-CCSCEEEEEECSSCEEEEECCCSCCT---TSCCCEEEEEEEETTCSCCEEEE--
T ss_pred             EEEcCccccCCCCCccceecCCCCC-CCcccEEEeccCCeEEEEecCCCcCC---CCcccEEEEEEEeCCCCceEEee--
Confidence            9999999988876665666666665 88899999899999999999876432   24689999999877655433222  


Q ss_pred             ecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCcc
Q psy12061        447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER  483 (626)
Q Consensus       447 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~  483 (626)
                       .....++.+.+|.|++.|.|+|+|.|..|.|++|..
T Consensus       154 -~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~  189 (197)
T 3lpw_A          154 -TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQL  189 (197)
T ss_dssp             -EESSSEEEECCCCTTCEEEEEEEEEETTEECCCEEC
T ss_pred             -cccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccC
Confidence             234566999999999999999999999999887754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.88  E-value=6.9e-22  Score=188.25  Aligned_cols=249  Identities=16%  Similarity=0.144  Sum_probs=157.6

Q ss_pred             CCCCceEEEEeeeCCCCCC-----eeEEEeCCEEc-------------cCCCcEEEcc--------CCcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-----KFVWKKDGNII-------------GSGGRRKIFE--------NGNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-----~i~W~~~~~~i-------------~~~~~~~~~~--------~g~L~i~~v~~~d~   55 (626)
                      +..|++|+|.|.+.+.|.+     .|.|+|+|...             ....|..+..        +++|.|.+++.+|+
T Consensus        12 ~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~   91 (313)
T 4fqp_A           12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDE   91 (313)
T ss_dssp             CBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGC
T ss_pred             EecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhC
Confidence            5789999999999887765     49999987532             2344555432        35799999999999


Q ss_pred             EEEEEEEEc-CCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccC
Q psy12061         56 GIYSCTATN-VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELE  133 (626)
Q Consensus        56 G~Y~C~a~n-~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~  133 (626)
                      |.|+|.|.+ ..|.....+.|.|..+|..... +....+..|+.+.|.|.+. +.|.|  .+.|++++..+.........
T Consensus        92 G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~-~~~~~~~~~~~~~~~C~~~~~~P~~--~i~W~~~~~~~~~~~~~~~~  168 (313)
T 4fqp_A           92 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGEPVPMARCVSTGGRPPA--QITWHSDLGGMPNTSQVPGF  168 (313)
T ss_dssp             EEEEEEEECSSSCEEEEEEEECCBBCCEEEEE-ECCBCCCSSCEEEEEEEEEEEBSCC--EEEEEETTCCEEEEEEEECS
T ss_pred             EEEEEEEeeccCcceeeeeeeeeccCCcceec-ccceEeecCceEEEEEEccCccCCc--EEEeecCCccccccceeeee
Confidence            999998864 4556666778888777766553 4455677889999999876 56665  56999998887643210000


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce--EEEEEEEEeCCCCC---CCceEEEEEeccceEEEEecCCCCCC
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGL---PGGVQVVEVHKTSATIQWTDGATNGR  208 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~--~~~~~l~v~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~  208 (626)
                      ........+.|.|..+...|.|.|+|.|.|..+..  +..+.|.|..+|..   +.... .......+.|.|..      
T Consensus       169 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~-~~~~g~~v~l~C~~------  241 (313)
T 4fqp_A          169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNN-WYLGQNEATLTCDA------  241 (313)
T ss_dssp             STTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSC-EETTCCCEEEEEEE------
T ss_pred             cccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccce-eecCCCeEEEEEEe------
Confidence            01111112468899999999999999999987764  44455555544421   00000 01122345555542      


Q ss_pred             cccEEEEEEeecC-CCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        209 PITHYKIIARTNW-NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       209 ~~~~y~v~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                             ...+.. ...|.+.+..+.....   .....+.|.+ +...+.+.|+|.|.|..|..
T Consensus       242 -------~g~P~p~~v~W~~~~~~l~~~~~---~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          242 -------RSNPEPTGYNWSTTMGPLPPFAV---AQGAQLLIRP-VDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             -------EEESCCCEEEEEETTBSCCTTEE---EETTEEEECC-CSSCCEEEEEEEEECSSCEE
T ss_pred             -------cCCCCCcEEEEEECCEECCCceE---EeCCEEEECc-CChhhCEEEEEEEEeCCCcE
Confidence                   111111 1234443332211110   1112466655 99999999999999999854

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.88  E-value=1.8e-21  Score=170.18  Aligned_cols=156  Identities=17%  Similarity=0.239  Sum_probs=116.0

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeCCEEcc---C-----------C----CcEEEccCCcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIG---S-----------G----GRRKIFENGNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~---~-----------~----~~~~~~~~g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|.+.+ .+.+.|.|+|+|..|.   .           +    +|..+..+++|.|.+++.+|+|.|+|.|
T Consensus        10 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~   89 (193)
T 2if7_A           10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQI   89 (193)
T ss_dssp             EETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEEEE
T ss_pred             EEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEEEE
Confidence            578999999999976 4567999999987552   1           1    3667777889999999999999999999


Q ss_pred             EcCCCCceeeEEEEEEeCCceeeeCCCceEEecCC-cEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC
Q psy12061         63 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG  141 (626)
Q Consensus        63 ~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~-~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  141 (626)
                      .|..+.....+.|.|..+|..............|. +++|.|.+.+.++ .++|.|+++|..+..              +
T Consensus        90 ~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p-~p~i~W~~~g~~l~~--------------~  154 (193)
T 2if7_A           90 STKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADD-NVSFRWEALGNTLSS--------------Q  154 (193)
T ss_dssp             ECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCT-TCEEEEEETTEEEES--------------S
T ss_pred             EecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCC-ceEEEEEeCCEEcCC--------------C
Confidence            99988877778899976543221111112234565 8999999998542 236799999987642              3


Q ss_pred             CeEEEeecCCC-CCEeEEEEEEeCCCceEEEE
Q psy12061        142 GLLEITNASFA-DAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       142 ~~l~i~~~~~~-d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      +.|.|...... |+|.|+|.|.|..|..+..+
T Consensus       155 ~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          155 PNLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             SEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence            45777655554 89999999999999876543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.88  E-value=6.5e-23  Score=182.99  Aligned_cols=171  Identities=23%  Similarity=0.353  Sum_probs=131.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEc------------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC-
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNII------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i------------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~-   68 (626)
                      +.+|++++|.|.+.|.|.+.|.|+|++..+            ....|+.+. +++|.|.+++.+|+|.|+|.|.|..|. 
T Consensus        16 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~~g~~   94 (209)
T 1nbq_A           16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGTYTCMVSEEGGNS   94 (209)
T ss_dssp             EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCSEEEEEEEETTSSC
T ss_pred             EEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHCcEEEEEEecCCCCc
Confidence            578999999999999999999999987652            223555554 378999999999999999999998763 


Q ss_pred             -ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCC--ccCCCeeE--ecCC
Q psy12061         69 -DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLN--ELETPNIN--IDGG  142 (626)
Q Consensus        69 -~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~--~~~~  142 (626)
                       ....+.|.|..+|.+... +....+..|++++|.|.+ .+.|.|  .+.|++++..+......  .....++.  ...+
T Consensus        95 ~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
T 1nbq_A           95 YGEVKVKLIVLVPPSKPTV-NIPSSATIGNRAVLTCSEQDGSPPS--EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG  171 (209)
T ss_dssp             EECCEEECCEEBCCCCCCC-CCBSEEETTSCEEECCCCCSCBSCC--EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTC
T ss_pred             cceEEEEEEEecCCcCCCc-ccccceecCCEEEEEEeCCCCCCCc--eeEEEECCeeCCCccccceeeeccceEEcCCcc
Confidence             345678888887776543 445678999999999997 888876  56999999988754211  00111122  2567


Q ss_pred             eEEEeecCCCCCEeEEEEEEeCCCce--EEEEEEEE
Q psy12061        143 LLEITNASFADAGEYECVVKSTVGKI--STKTTVIV  176 (626)
Q Consensus       143 ~l~i~~~~~~d~g~Y~C~a~n~~g~~--~~~~~l~v  176 (626)
                      .|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|
T Consensus       172 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          172 ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             eEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            99999999999999999999999987  44444444

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.88  E-value=6.4e-21  Score=165.98  Aligned_cols=168  Identities=14%  Similarity=0.276  Sum_probs=131.2

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|+|+..+..   ............+.+.+|+|++.|.|+|+|.
T Consensus         9 ~P~~l~~~~~~~~sv~l~W~~p~-------~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   78 (186)
T 1qr4_A            9 NPKDLEVSDPTETTLSLRWRRPV-------AKFDRYRLTYVSPSGK---KNEMEIPVDSTSFILRGLDAGTEYTISLVAE   78 (186)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS-------SCCSEEEEEEECTTCC---EEEEEECTTCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CCCceEEEecCCCEEEEEEeCCC-------CCccEEEEEEEeCCCC---eeEEECCCCCCEEEECCCCCCCEEEEEEEEE
Confidence            88999999999999999999884       4578999999744321   1222334456679999999999999999999


Q ss_pred             eCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCc
Q psy12061        473 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN  552 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~  552 (626)
                      |..|.+... .+.+.|.    +.+|.++++...+.+++.|+|+  +|.   +.+.+|.|.|+..+..   ..........
T Consensus        79 ~~~~~s~~~-~~~~~t~----p~~P~~l~~~~~~~~sv~l~W~--~p~---~~i~~Y~v~~~~~~~~---~~~~~~~~~~  145 (186)
T 1qr4_A           79 KGRHKSKPT-TIKGSTV----VGSPKGISFSDITENSATVSWT--PPR---SRVDSYRVSYVPITGG---TPNVVTVDGS  145 (186)
T ss_dssp             SSSCBCCCE-EEEEECC----CCCCSCEEEESCCSSCEEEEEC--CCS---SCCSEEEEEEEETTCC---CCEEEEEETT
T ss_pred             cCCccCCCE-EEEEECC----CCCCCccEEEEeCCCEEEEEEE--CCC---CcccEEEEEEEeCCCC---CceEEEcCCC
Confidence            976665542 3444553    3477899999889999999999  442   6799999998876542   1334455667


Q ss_pred             cceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       553 ~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      .+++.+.+|.|++.|.|+|+|.+..|.|++.
T Consensus       146 ~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  176 (186)
T 1qr4_A          146 KTRTKLVKLVPGVDYNVNIISVKGFEESEPI  176 (186)
T ss_dssp             CCEEEECSCCSSCEEEEEEEEEETTEECCCE
T ss_pred             cCEEEEcCCCCCCEEEEEEEEEcCCCcCcCE
Confidence            8999999999999999999999999888754

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.88  E-value=2.2e-22  Score=179.99  Aligned_cols=170  Identities=18%  Similarity=0.213  Sum_probs=124.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc------------CCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG------------SGGRRKIFE---NGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~------------~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.|.|.+.|.|+|  ++..+.            ..+|+.+..   +++|.|.+++.+|+|.|+|.|.|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   91 (213)
T 3mj8_L           12 VALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWD   91 (213)
T ss_dssp             EETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEecc
Confidence            5689999999999999999999998  222110            234666433   33699999999999999999999


Q ss_pred             CCC---CceeeEEEEEE----eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCC---ccCC
Q psy12061         65 VHG---MDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN---ELET  134 (626)
Q Consensus        65 ~~g---~~~~~~~l~v~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~---~~~~  134 (626)
                      ..+   .....+.|.|.    .+|.+... +....+..|++++|.|.+.+.+++.+.+.|+|||..+......   ....
T Consensus        92 ~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  170 (213)
T 3mj8_L           92 GTNSAWVFGSGTKVTVLGQPNAAPSVTLF-PPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSD  170 (213)
T ss_dssp             TTTTEEEEBCCEEEEEECSCCBCCEEEEE-CCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEET
T ss_pred             CCcceeEEcCceEEEEeCCCCCCCeEEcc-CCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccC
Confidence            988   34556888888    45555443 3333444899999999999975554578999999998643100   0011


Q ss_pred             CeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061        135 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus       135 ~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ..+. ..+.|.|.++..+|.|.|+|.|.|..+.....+.
T Consensus       171 ~~~~-~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          171 SKYM-ATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             TEEE-EEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             CcEE-EEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            1222 2356999999999999999999999877665553

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.88  E-value=3.8e-23  Score=223.28  Aligned_cols=171  Identities=18%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             CCCCceEEEEeeeCC--CCCCeeEEEeCCEEccCCCcEE-----------EccCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNPEA--APKPKFVWKKDGNIIGSGGRRK-----------IFENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g--~p~p~i~W~~~~~~i~~~~~~~-----------~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +.+|++++|.|.+.+  .|.+.+.|++++..+.......           ....++|.|.+++.+|+|.|+|.|.|..|.
T Consensus       236 v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~  315 (772)
T 3v2a_R          236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT  315 (772)
T ss_dssp             EETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCE
T ss_pred             EecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcc
Confidence            468999999999988  4567999999998865432221           112346999999999999999999999998


Q ss_pred             ceeeEEEEEEeCCceeeeC--CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEE
Q psy12061         69 DESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI  146 (626)
Q Consensus        69 ~~~~~~l~v~~~p~~~~~~--~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  146 (626)
                      ....+.|.|..+|.+...+  +....+.+|++++|.|.+.+.|.|.  +.|+|+|..+...       .++. ....|.|
T Consensus       316 ~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~g~~l~~~-------~~~~-~~~~L~i  385 (772)
T 3v2a_R          316 KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPE--IKWYKNGIPLESN-------HTIK-AGHVLTI  385 (772)
T ss_dssp             EEEEEEEEEECCCC------------------------------------------------------------------
T ss_pred             eeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCe--EEEEECCEeCCCC-------ceEc-cceeEEE
Confidence            8888999998888654332  3467889999999999999988764  5899999988652       1111 4578999


Q ss_pred             eecCCCCCEeEEEEEEeCCCce--EEEEEEEEeCCCCC
Q psy12061        147 TNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGL  182 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~g~~--~~~~~l~v~~~P~~  182 (626)
                      .+++.+|+|.|+|.|.|..|..  +..+.|.|..+|..
T Consensus       386 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~  423 (772)
T 3v2a_R          386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQI  423 (772)
T ss_dssp             --------------------------------------
T ss_pred             ecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcc
Confidence            9999999999999999998865  45567777777654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.87  E-value=3.6e-22  Score=189.88  Aligned_cols=251  Identities=16%  Similarity=0.170  Sum_probs=156.1

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEc---------------c--CCCcEEEc----cCCcEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNII---------------G--SGGRRKIF----ENGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i---------------~--~~~~~~~~----~~g~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++++|.|.+.+. |.+.|.|+|++...               .  ..+|..+.    .+++|.|.+++.+|+|.|+
T Consensus        11 v~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~   90 (308)
T 4fom_A           11 AVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYI   90 (308)
T ss_dssp             EETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEEEE
T ss_pred             EEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEEEE
Confidence            5689999999999765 44589999964321               1  12344442    2357999999999999999


Q ss_pred             EEEEcC-CCCceeeEEEEEEeCCcee-eeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCe
Q psy12061         60 CTATNV-HGMDESKGRLIVLHGPSYY-EQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPN  136 (626)
Q Consensus        60 C~a~n~-~g~~~~~~~l~v~~~p~~~-~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~  136 (626)
                      |.|.|. .|.....+.+.+...|... ...+.......|+.+.|.|.+ .+.|.|  .+.|++++..+........  ..
T Consensus        91 C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~--~i~W~~~~~~~~~~~~~~~--~~  166 (308)
T 4fom_A           91 CKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVA--HIDWEGDLGEMESTTTSFP--NE  166 (308)
T ss_dssp             EEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCC--EEEECCCSSBCCEEEEECT--TS
T ss_pred             EEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCc--eEEEEECCcccccccceee--ee
Confidence            999986 4556666777777766543 334556666788999999975 567765  5689999988865421111  11


Q ss_pred             eEecCCeEEEeecCCCCCEeEEEEEEeCCCce--EEEEEEEEeCCCCCC---CceEEEEEeccceEEEEecCCCCCCccc
Q psy12061        137 INIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLP---GGVQVVEVHKTSATIQWTDGATNGRPIT  211 (626)
Q Consensus       137 ~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~--~~~~~l~v~~~P~~p---~~~~~~~~~~~~~~l~W~~~~~~~~~~~  211 (626)
                      .....+.|.|.++...|.|.|+|.|.|..|..  +..+.|.|..+|...   ..... ......+.|.|...   +.+. 
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~-~~~g~~v~l~C~~~---g~P~-  241 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNW-FVGRKGVNLKCNAD---ANPP-  241 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCE-ETTCCSCEEECCEE---EESC-
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceee-eeccccEEEEEEEe---cCCC-
Confidence            11233579999999999999999999987765  444555555554321   11111 12233455554421   1110 


Q ss_pred             EEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        212 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       212 ~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                      -..        ..|.+.+..+...  ....+. ...+...+...+.+.|+|.|.|..|...
T Consensus       242 p~~--------v~W~k~~~~~~~~--~~~~~~-~~l~i~~v~~~d~G~Y~C~A~N~~G~~~  291 (308)
T 4fom_A          242 PFK--------SVWSRLDGQWPDG--LLASDN-TLHFVHPLTFNYSGVYICKVTNSLGQRS  291 (308)
T ss_dssp             EEE--------EECCBSSSCCCSS--CBCSTT-EEECCSCCCSCCCSEEEEEEEETTEEEE
T ss_pred             CcE--------EEEEECCeECCCc--EEEcCC-eEEEECCCChhhCEEEEEEEEeCCCcEE
Confidence            001        1233322222110  011222 3333344888999999999999999653

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.87  E-value=4.7e-23  Score=195.96  Aligned_cols=171  Identities=15%  Similarity=0.208  Sum_probs=135.3

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEE----ccCCcEEEccCCCCCCEEEEEEEEcCCCCcee--eEE
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDES--KGR   74 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~----~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~   74 (626)
                      +.+|+.+.|.|.+ .|.|.|.|.|+|++.++........    ...+.|.|..+..+|+|.|+|.|.|..|....  .+.
T Consensus       126 ~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~  205 (308)
T 4fom_A          126 DGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFI  205 (308)
T ss_dssp             TTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             EcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEE
Confidence            3568999999986 6889999999999988853221110    01135999999999999999999998877544  456


Q ss_pred             EEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCC
Q psy12061         75 LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA  154 (626)
Q Consensus        75 l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  154 (626)
                      |.|..+|.+...+.....+..|++++|.|.+.+.|.| ..+.|+|++..+....        ...++..|.|.+++.+|+
T Consensus       206 l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~~v~W~k~~~~~~~~~--------~~~~~~~l~i~~v~~~d~  276 (308)
T 4fom_A          206 LDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP-FKSVWSRLDGQWPDGL--------LASDNTLHFVHPLTFNYS  276 (308)
T ss_dssp             CCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCE-EEEECCBSSSCCCSSC--------BCSTTEEECCSCCCSCCC
T ss_pred             EEEecCCeeEEcccceeeeeccccEEEEEEEecCCCC-cEEEEEECCeECCCcE--------EEcCCeEEEECCCChhhC
Confidence            6777788777666677788899999999999999877 3579999998875431        122344567889999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      |.|+|.|.|..|..+.++.|.|..+|.
T Consensus       277 G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          277 GVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             SEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            999999999999999999999999884

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=4.4e-23  Score=199.05  Aligned_cols=172  Identities=17%  Similarity=0.177  Sum_probs=136.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCCcEEEccCCCCCCE-EEEEEEEcCCCCceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDSG-IYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      +.+|++++|.|.+.|.|.|.|.|++++..+... .+.....+++|.|.+++.+|+| .|+|.|.|..|.....+.|.|..
T Consensus       170 v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~  249 (347)
T 2ifg_A          170 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF  249 (347)
T ss_dssp             CBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE
T ss_pred             EeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC
Confidence            679999999999999999999999998765422 2223344568999999999999 99999999999988888888877


Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCC----eeEecCCeEEEeecCCCCCE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP----NINIDGGLLEITNASFADAG  155 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g  155 (626)
                      +|.+..     ..+..|++++|.|.+.|.|.|  +|.|+++|..+...........    ......+.|.|.+++.+|+|
T Consensus       250 ~P~i~~-----~~~~~g~~v~l~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G  322 (347)
T 2ifg_A          250 PASVQL-----HTAVEMHHWCIPFSVDGQPAP--SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG  322 (347)
T ss_dssp             EEEEEE-----CCCEESSSEEEEEEEEEESCC--EEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCE
T ss_pred             CCeeee-----ccCccCceEEEEEEeeecCCC--cEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCc
Confidence            776411     124689999999999999887  5589999999875421000000    00012457999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      .|+|.|.|..|..+..+.|.|..+|
T Consensus       323 ~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          323 NYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             eEEEEEecCCCceeeEEEEEecCCC
Confidence            9999999999999999999988776

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=3.9e-22  Score=173.81  Aligned_cols=163  Identities=14%  Similarity=0.189  Sum_probs=118.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC--ceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM--DESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~v   77 (626)
                      |.+|++|+|.|.+.+. .+.+.|+|+|..+...  .......+++|.|.+++.+|+|.|+|.|.|..+.  ....+.|.|
T Consensus        15 v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V   93 (188)
T 1oll_A           15 VPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV   93 (188)
T ss_dssp             EETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEE
T ss_pred             CCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEe
Confidence            5689999999999764 5699999999887421  1111123457999999999999999999987553  244577888


Q ss_pred             Ee---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCC
Q psy12061         78 LH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA  154 (626)
Q Consensus        78 ~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  154 (626)
                      ..   +|.+.. .| ...+.+|++++|.|.+.+.+ +  .+.|+|+|..+...       .......+.|.|.+++.+|+
T Consensus        94 ~~~~~~p~i~~-~p-~~~v~~G~~v~L~C~~~~~~-~--~~~w~k~g~~~~~~-------~~~~~~~~~L~I~~v~~~d~  161 (188)
T 1oll_A           94 TEMYDTPTLSV-HP-GPEVISGEKVTFYCRLDTAT-S--MFLLLKEGRSSHVQ-------RGYGKVQAEFPLGPVTTAHR  161 (188)
T ss_dssp             ESCSCCCEEEE-ES-CSEEETTCEEEEEEECSSSC-S--EEEEEEESSSCEEE-------EEECSSEEEEEEEECCGGGC
T ss_pred             cccCCCCeEEE-CC-CCccccCCEEEEEEEcCCCC-C--EEEEEECCcccccc-------ccCCCceeEEEECCCCcCCC
Confidence            64   444443 33 45689999999999987653 3  67999998776431       11122457899999999999


Q ss_pred             EeEEEEEEeCCC---ceEEEEEEEEe
Q psy12061        155 GEYECVVKSTVG---KISTKTTVIVE  177 (626)
Q Consensus       155 g~Y~C~a~n~~g---~~~~~~~l~v~  177 (626)
                      |.|+|.|.|...   ..+..+.|.|.
T Consensus       162 G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          162 GTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             cEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            999999998652   23455566554

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.87  E-value=2e-21  Score=192.48  Aligned_cols=213  Identities=18%  Similarity=0.220  Sum_probs=149.8

Q ss_pred             EEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc--
Q psy12061        363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE--  440 (626)
Q Consensus       363 ~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~--  440 (626)
                      .+.+.|.|..+..........   ...|+.+|.++.. ..+.+++.|+|++|...+.   ..+.+|.|+|+.......  
T Consensus       309 s~~C~C~ng~~ra~~d~~~~~---ct~pPsaP~nl~~-~vs~tSv~LsW~pP~~~gG---~~i~~Y~V~~~~~~~~~~~~  381 (536)
T 3fl7_A          309 ATSCECEEGFFRAPQDPASMP---CTRPPSAPHYLTA-VGMGAKVELRWTPPQDSGG---REDIVYSVTCEQCWPESGEC  381 (536)
T ss_dssp             CSSCEECTTCBCCTTCCTTSC---CBCCCCCBSCEEE-ECCTTSEEEEECCBSCCCS---CSCCEEEEEEEEECC-CCCE
T ss_pred             ccEEEEeccccccCCCccccc---cccCCCcccceEE-EecCCEEEEEEeCCcCCCC---CceeEEEEEEEeccCCCCcc
Confidence            356778888876543322211   1124458889854 6889999999999875431   258999999986432110  


Q ss_pred             ----ceEEE---EecCccceEEEeCCccCceEEEEEEEeeCCCC---CCCCccEEEeecCCCCCCCCceEEEeeeCCCEE
Q psy12061        441 ----TAVYY---LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE---GPESERYLERTYRKAPQKPPSAVHIKGINPTTV  510 (626)
Q Consensus       441 ----~~~~~---~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~---s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~  510 (626)
                          .....   ........+++.+|+|++.|.|+|+|.|..|.   ++.+..+.+.|.+..    |..+.+...+.+++
T Consensus       382 ~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~----Ps~~~~~~~s~tSV  457 (536)
T 3fl7_A          382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTE----PPKVRLEGRSTTSL  457 (536)
T ss_dssp             EECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCC----CCEEEEEECCC-CC
T ss_pred             cccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccC----CCCCceeeccCCeE
Confidence                00111   12234567999999999999999999999887   456777777776544    44555677789999


Q ss_pred             EEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEe
Q psy12061        511 HVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ  590 (626)
Q Consensus       511 ~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~  590 (626)
                      .|+|+  +|...++.|.+|.|+|+..+..    ..........+++.|.+|+|++.|.|+|+|.|.+|.|++|.+ +.++
T Consensus       458 ~LsW~--pP~~~ng~I~~Y~V~y~~~~~~----~~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~-v~~~  530 (536)
T 3fl7_A          458 SVSWS--IPPPQQSRVWKYEVTYRKKGDS----NSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKV-HEFQ  530 (536)
T ss_dssp             EEEEE--CCTTTTTTCSEEEEEEEEC--C----CCCEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCC-EEEE
T ss_pred             EEEEE--CCcCCCCcccEEEEEEEECCCC----ceEEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCC-EEEE
Confidence            99999  6677899999999999876554    222344567789999999999999999999999999999965 4566


Q ss_pred             ecc
Q psy12061        591 MGE  593 (626)
Q Consensus       591 ~~~  593 (626)
                      |.+
T Consensus       531 T~~  533 (536)
T 3fl7_A          531 TLS  533 (536)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=188.66  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=136.8

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEeC-CEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKKD-GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~~-~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v   77 (626)
                      +.+|+.++|.|.+.+ |.  |.|.|+++ +..+..+.++.+..++.|.|.+++.+|+|.|+|.|.|..+...+ .+.|.|
T Consensus       101 v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  179 (292)
T 4dkd_C          101 VFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV  179 (292)
T ss_dssp             EETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEE
T ss_pred             EcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEE
Confidence            568999999999998 55  78999997 77777777877777788999999999999999999998776544 788888


Q ss_pred             Ee----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         78 LH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        78 ~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                      ..    +|.+.. .+....+..|++++|.|.+.+.|. .+.+.|++++..+...........+. ...+.|.|.+++.+|
T Consensus       180 ~~~~~~~p~i~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d  256 (292)
T 4dkd_C          180 QKVIPGPPALTL-VPAELVRIRGEAAQIVCSASSVDV-NFDVFLQHNNTKLAIPQQSDFHNNRY-QKVLTLNLDQVDFQH  256 (292)
T ss_dssp             ECCCCSSCEEEE-ESSCBCCCSSSCEEEEEEEEESSS-CCEEECCBSSCCCCCCBEEEEETTEE-EEEEEEEESSCCTTS
T ss_pred             eCCCCCCCeEEc-cCCceeEecCCCEEEEEEecCCCC-ceEEEEeCCCcccccCccceecccee-eeEEEEEECccChhc
Confidence            86    555544 466667789999999999998775 45789999988765432101111111 133589999999999


Q ss_pred             CEeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      +|.|+|.|.|..|..+..+.|.|......+
T Consensus       257 ~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          257 AGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             CEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             CeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence            999999999999999999999988766544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.87  E-value=3.2e-22  Score=175.86  Aligned_cols=156  Identities=16%  Similarity=0.213  Sum_probs=106.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE--EEccCCcEEEccCCCCCCEEEEEEEEcCCCCc--eeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~--~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v   77 (626)
                      |.+|++++|.|.+.+.|. .+.|+|+|..+....+.  ....++.|.|.+++.+|+|.|+|.|.|..|..  ...+.|.|
T Consensus        16 v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V   94 (196)
T 2d3v_A           16 ISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVV   94 (196)
T ss_dssp             EETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEE
T ss_pred             ccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEe
Confidence            568999999999998876 99999999887532211  11234579999999999999999999987643  34578888


Q ss_pred             EeC--CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCCeEEEeecCCC
Q psy12061         78 LHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFA  152 (626)
Q Consensus        78 ~~~--p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~  152 (626)
                      ...  ++.+...| ...+.+|++++|.|.+.+.| +  .+.|+|+|..+......    .....   ..+.|.|.+++.+
T Consensus        95 ~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~--~~~W~k~g~~~~~~~~~----~~~~~~~~~~~~L~I~~v~~~  166 (196)
T 2d3v_A           95 TGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-D--RFILTEEGDHKLSWTLD----SQLTPSGQFQALFPVGPVTPS  166 (196)
T ss_dssp             ECSSCCCEEEC------------CEEEEEESSCC-S--EEEEEEC---CCEEEEE----CEECTTSCEEEEEECCCCBTT
T ss_pred             cCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-C--EEEEEccCCcccccccc----cccccCCCceeEEEeeecCcc
Confidence            763  22333223 35789999999999999988 4  56999999887532100    01111   2368999999999


Q ss_pred             CCEeEEEEEEeCCC
Q psy12061        153 DAGEYECVVKSTVG  166 (626)
Q Consensus       153 d~g~Y~C~a~n~~g  166 (626)
                      |+|.|+|.|.|..+
T Consensus       167 D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          167 HRWMLRCYGSRRHI  180 (196)
T ss_dssp             BCEEEEEEEEETTE
T ss_pred             cCeeEEEEEEccCC
Confidence            99999999999865

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.87  E-value=5.9e-22  Score=177.14  Aligned_cols=165  Identities=16%  Similarity=0.247  Sum_probs=119.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++  ..+            ...+|+.+..++   +|.|.+++.+|+|.|+|.|.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   92 (213)
T 3d9a_L           13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSN   92 (213)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEeeec
Confidence            578999999999999999999999843  221            113566665433   799999999999999999999


Q ss_pred             CCCCcee-eEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cC----CccCCC
Q psy12061         65 VHGMDES-KGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DL----NELETP  135 (626)
Q Consensus        65 ~~g~~~~-~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~----~~~~~~  135 (626)
                      ..+.... .+.|.|..   +|.+...++... +..|++++|.|.+.+.+++.+.+.|+|||..+... ..    ......
T Consensus        93 ~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  171 (213)
T 3d9a_L           93 SWPYTFGGGTKLEIKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS  171 (213)
T ss_dssp             SSSCEECCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTC
T ss_pred             CCcceeCCCEEEEEecCCCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCC
Confidence            8876433 45777765   455544433332 34799999999999844434578999999998754 10    000011


Q ss_pred             eeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        136 NINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       136 ~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .+. ..+.|.|.++..+|+|.|+|.|.|.....
T Consensus       172 ~~~-~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          172 TYS-MSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             CEE-EEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CEE-EEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            111 23489999999999999999999987664

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.87  E-value=9.3e-22  Score=175.29  Aligned_cols=165  Identities=19%  Similarity=0.284  Sum_probs=118.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.|.|.|.|.|+|+  |..+            ....|+.+..++   +|.|.+++.+|+|.|+|.|.|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   91 (210)
T 1lk3_L           12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (210)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEc
Confidence            57899999999999999899999984  2222            123566665433   799999999999999999999


Q ss_pred             CCCCcee-eEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-c----CCccCCC
Q psy12061         65 VHGMDES-KGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-D----LNELETP  135 (626)
Q Consensus        65 ~~g~~~~-~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~----~~~~~~~  135 (626)
                      ..+.... .+.|.|..   +|.+...++... +..|++++|.|.+.+.+++.+++.|+|||..+... .    .......
T Consensus        92 ~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  170 (210)
T 1lk3_L           92 NGPLTFGAGTKLELKRADAAPTVSIFPPSTE-QLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDS  170 (210)
T ss_dssp             SSSCEECCCEEEEECCCCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTC
T ss_pred             CCCceeCCCEEEEEcCCCcCCeEEEECCchh-hccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCC
Confidence            8775433 45777755   455544434332 34799999999999855444678999999988654 1    0000001


Q ss_pred             eeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        136 NINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       136 ~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .+ ...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       171 ~~-~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          171 TY-SMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CE-EEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CE-EEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            11 112379999999999999999999987643

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.87  E-value=8.9e-20  Score=180.27  Aligned_cols=309  Identities=16%  Similarity=0.199  Sum_probs=188.5

Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCC------CcccEEEEEEeecCCCC
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG------RPITHYKIIARTNWNST  224 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~------~~~~~y~v~~~~~~~~~  224 (626)
                      ..+...|...+.|..|. ...+.+.-...|.||.++.+.... ..+.|+|++|....      ...+.|.|+|+..+ ..
T Consensus        81 ~~~~~~~~v~~~~~~~~-~~~~~~~~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~~  157 (419)
T 2gys_A           81 VTDVDYFSFQPDRPLGT-RLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-DS  157 (419)
T ss_dssp             TTCEEEEEEEESSCCCE-EEEEEGGGSBCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT-SC
T ss_pred             eecccEEEEeCCccccc-cceEcHHHcccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCC-CC
Confidence            34445555555555443 222222223589999999987655 69999999876432      24678999999886 67


Q ss_pred             ceEeecceeeeeeeccCCceeEEEE-eeccCCceEEEEEEEecCC---ccCCCCCCCC--cccCCCCCCCCCCceeEeec
Q psy12061        225 WFNVSEHVIGKEVDRYTGRKEASIE-NVLVPWSTYEFKVIAGNEL---GYGEPSSPSP--QYNTPADKPYQAPSRIGGGG  298 (626)
Q Consensus       225 w~~~~~~~~~~~~~~~~~~~~~~i~-~~l~~~~~y~~~v~a~n~~---g~~~~s~~~~--~~~~~~~~p~~~p~~~~~~~  298 (626)
                      |.......        .......+. .+|.|++.|.++|+|.|..   +.+.+|..+.  .+.+.... +.+|.++....
T Consensus       158 w~~~~~~~--------~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~-~~~p~~l~c~~  228 (419)
T 2gys_A          158 WEDAAILL--------SNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD-EAQPQNLECFF  228 (419)
T ss_dssp             STTCEEEE--------ESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCC-TTSCEEEEEEE
T ss_pred             hhheeeec--------ccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccc-cCCCceEEEEE
Confidence            76543210        011223332 1499999999999999964   3345544332  34455555 46889999998


Q ss_pred             CCcCeEEEEEeeCCCCCcccCcceEEEEEEecCC-C----c-ceeeeeeeec------ceeeEEEEeCCCcceeEEEEEE
Q psy12061        299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-T----E-FQSETLKEYG------NVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       299 ~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~-~----~-~~~~~~~~~~------~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      .....|.+.|++.  ....+ ...|.|.|+.... +    . +.........      ......+.+.+|.+.+.|.++|
T Consensus       229 ~~~~~l~c~W~~~--~~~~~-~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V  305 (419)
T 2gys_A          229 DGAAVLSCSWEVR--KEVAS-SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSV  305 (419)
T ss_dssp             CSSSEEEEEEEEE--HHHHT-TCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEE
T ss_pred             CCceEEEeEEECC--CCCCC-ceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEE
Confidence            8889999999983  22222 3569999986532 1    1 2221111110      0123456788899999999999


Q ss_pred             EEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEE
Q psy12061        367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL  446 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~  446 (626)
                      .|.+..+.        +.....+.+.|| .+.+.. ..+++.|+|++|....   ...+.+|.|+|+..+..-.......
T Consensus       306 ~a~~~~~~--------~~~~~~v~p~PP-~l~v~~-~~~~l~l~W~~P~~~~---~~~~l~Yev~y~~~~~~w~~~~~~~  372 (419)
T 2gys_A          306 QPRRAEKH--------IKSSVNIQMAPP-SLQVTK-DGDSYSLRWETMKMRY---EHIDHTFEIQYRKDTATWKDSKTET  372 (419)
T ss_dssp             EECCCCEE--------EEGGGSBCCCCC-EEEEC----CCCEEEEEC-----------CEEEEEEEECSSSCSTTSCEEE
T ss_pred             EEccCCcc--------ccceEEEEECCC-CeEEEE-eCCeEEEEECCCcccc---cccceEEEEEEEcCCCCcceeeccc
Confidence            99765431        222222333355 466554 4789999999985421   1247799999988764311111111


Q ss_pred             ecCccceEEEeCCccCceEEEEEEEeeCCC--C---CCCCccEEEee
Q psy12061        447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAG--E---GPESERYLERT  488 (626)
Q Consensus       447 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g--~---s~~s~~~~~~t  488 (626)
                      .. ..+++.|.+|+|++.|.|+|+|.+..|  .   |++|..+.+.|
T Consensus       373 ~~-~~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS~WS~~~~~~t  418 (419)
T 2gys_A          373 LQ-NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT  418 (419)
T ss_dssp             EE-SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCCEECCC
T ss_pred             cc-cccEEEeccCCCCCeEEEEEEEEEcCCCCCCccCCCCCCeEeeC
Confidence            12 456799999999999999999999863  3   36677666655

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.87  E-value=2.4e-21  Score=192.00  Aligned_cols=220  Identities=19%  Similarity=0.224  Sum_probs=154.8

Q ss_pred             CCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC--
Q psy12061        254 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN--  331 (626)
Q Consensus       254 ~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~--  331 (626)
                      ....+.+.|.|.|..++............    |+.+|.++.. ..+.+++.|+|+++ ...++.++..|.|+|+..+  
T Consensus       304 s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~----pPsaP~nl~~-~vs~tSv~LsW~pP-~~~gG~~i~~Y~V~~~~~~~~  377 (536)
T 3fl7_A          304 PSPEGATSCECEEGFFRAPQDPASMPCTR----PPSAPHYLTA-VGMGAKVELRWTPP-QDSGGREDIVYSVTCEQCWPE  377 (536)
T ss_dssp             CCCTTCSSCEECTTCBCCTTCCTTSCCBC----CCCCBSCEEE-ECCTTSEEEEECCB-SCCCSCSCCEEEEEEEEECC-
T ss_pred             CCCCCccEEEEeccccccCCCcccccccc----CCCcccceEE-EecCCEEEEEEeCC-cCCCCCceeEEEEEEEeccCC
Confidence            44556788999999998765544333322    4567888854 57889999999983 3333347999999999743  


Q ss_pred             CCcceee-----eeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCC---CCCCccEEEEccCCCCCCCCCceEEEeee
Q psy12061        332 DTEFQSE-----TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP---GPESEVVTIFSAEDMPQVAPQGVFSRGFN  403 (626)
Q Consensus       332 ~~~~~~~-----~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~---~~~s~~~~~~t~~~~p~~~p~~~~~~~~~  403 (626)
                      ...|...     ............+++.+|.|++.|.|+|.|.|..|.   +..+..+.+.|.+.    +|..+.....+
T Consensus       378 ~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~----~Ps~~~~~~~s  453 (536)
T 3fl7_A          378 SGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT----EPPKVRLEGRS  453 (536)
T ss_dssp             CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSC----CCCEEEEEECC
T ss_pred             CCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeeccc----CCCCCceeecc
Confidence            1222110     001111223567889999999999999999999987   44566677777555    44566667788


Q ss_pred             cceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCcc
Q psy12061        404 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER  483 (626)
Q Consensus       404 ~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~  483 (626)
                      .+++.|+|++|...    +|.|.+|.|+|+..+.. ..  .........+++|.+|+|++.|.|+|+|.|..|.|++|..
T Consensus       454 ~tSV~LsW~pP~~~----ng~I~~Y~V~y~~~~~~-~~--~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~  526 (536)
T 3fl7_A          454 TTSLSVSWSIPPPQ----QSRVWKYEVTYRKKGDS-NS--YNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKV  526 (536)
T ss_dssp             C-CCEEEEECCTTT----TTTCSEEEEEEEEC--C-CC--CEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCC
T ss_pred             CCeEEEEEECCcCC----CCcccEEEEEEEECCCC-ce--EEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCC
Confidence            89999999988543    37799999999877654 21  1223445567999999999999999999999999999999


Q ss_pred             EEEeecC
Q psy12061        484 YLERTYR  490 (626)
Q Consensus       484 ~~~~t~~  490 (626)
                      +.++|..
T Consensus       527 v~~~T~~  533 (536)
T 3fl7_A          527 HEFQTLS  533 (536)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9998864

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.87  E-value=3.2e-22  Score=215.55  Aligned_cols=285  Identities=12%  Similarity=0.124  Sum_probs=155.4

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEec--------------CCCcceeeeeeeecce------ee
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK--------------NDTEFQSETLKEYGNV------GI  348 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~--------------~~~~~~~~~~~~~~~~------~~  348 (626)
                      ..|.++.+...+.+++.|+|+++. ...+.++.+|.|+|+..              +...|...........      ..
T Consensus       470 ~~~~~l~v~~~s~~sv~LsW~~p~-~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~  548 (897)
T 2dtg_E          470 NELLKFSYIRTSFDKILLRWEPYW-PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNH  548 (897)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCC-SSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSC
T ss_pred             cceeEEEEEEEecCeEEEEecCCC-CCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccc
Confidence            355678888889999999999843 24456899999999875              2345654433211110      24


Q ss_pred             EEEEeCCCcceeEEEEEEEE-ecCCCC----CCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccce
Q psy12061        349 AVVRIPSEFYYTEYEVKVQA-INDVGP----GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG  423 (626)
Q Consensus       349 ~~~~~~~L~p~~~Y~~~v~a-~n~~g~----~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~  423 (626)
                      ..+.+.+|.|++.|.|+|+| .|..|.    |.+|....++|.+++|. +|.++.+...+.+++.|+|++|...    +|
T Consensus       549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps-~P~~l~~~~~s~tsI~LsW~pP~~~----nG  623 (897)
T 2dtg_E          549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VPLDPISVSNSSSQIILKWKPPSDP----NG  623 (897)
T ss_dssp             CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCC-CCEEEEEEECSSSCEEEEEECCCCS----SS
T ss_pred             cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCc-CCcceEEEeCCCCEEEEEEeCCCCC----CC
Confidence            66889999999999999999 999997    78898888999888887 8999999999999999999998543    36


Q ss_pred             eeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEe
Q psy12061        424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIK  503 (626)
Q Consensus       424 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~  503 (626)
                      .|.+|.|+|+.........       .........|.|++.|.|+|.|.+..+.++.+......+....|..+ ..+. .
T Consensus       624 ~I~~Y~V~~~~~~~~~~~~-------~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p-~~~~-~  694 (897)
T 2dtg_E          624 NITHYLVFWERQAEDSELF-------ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD-SQIL-K  694 (897)
T ss_dssp             SCSEEECCEEEECCCCSCT-------TCSSSCSCCCCCC-----------------------------------------
T ss_pred             CeeEEEEEEEECCCCccce-------ecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcc-cchh-h
Confidence            7999999987766532111       11112234588999999999999987765443322222222334433 3443 4


Q ss_pred             eeCCCEEEEEEeecCCCCCCCceeeEE---EEEE--Eecc--CCccccceeeecCccceEEecCCCCCceEEEEEEEEec
Q psy12061        504 GINPTTVHVTWRYVSPSFEEEPIIGYK---VRVW--EVDQ--DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN  576 (626)
Q Consensus       504 ~~~~~~~~l~W~~~~~~~~~~~i~~Y~---i~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~  576 (626)
                      ..+.+++.++|++  +.. + .+..+.   ..+.  ....  .... ..........+++.+.+|.|++.|.|+|+|+|.
T Consensus       695 ~~~~~s~~~~W~~--~~~-n-~v~~~~p~~~r~~l~~~~n~t~~~~-~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~  769 (897)
T 2dtg_E          695 ELEESSFRKTFED--YLH-N-VVFVPRPSRKRRSLGDVGNAGNNEE-HRPFEKVVNKESLVISGLRHFTGYRIELQACNQ  769 (897)
T ss_dssp             ---------------------------------------------C-CSCSCEECSCSEEEECSSCSSCEEEECCEEESC
T ss_pred             hhhhhheeeeEEE--ccC-c-eEEccCCCcccccccccccccCccc-cceEEecCCceEEEECCCCCCcEEEEEEEEEeC
Confidence            5677899999994  321 1 111110   0000  0000  0000 011123345678999999999999999999999


Q ss_pred             CCCCCC-C-CCcEEEeecc
Q psy12061        577 GGDGRM-S-SPAITFQMGE  593 (626)
Q Consensus       577 ~G~g~~-s-~~~~~~~~~~  593 (626)
                      .|.|++ | +..+.+++.+
T Consensus       770 ~G~g~~~s~s~~v~~~T~~  788 (897)
T 2dtg_E          770 DTPEERCSVAAYVSARTMP  788 (897)
T ss_dssp             SSSSCCBCCCCCEEEECCC
T ss_pred             CCCCCCCCCCceeEEeccC
Confidence            999875 2 2334555543

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.87  E-value=1.5e-21  Score=174.60  Aligned_cols=200  Identities=17%  Similarity=0.208  Sum_probs=147.3

Q ss_pred             CCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCC-cceeEEEE
Q psy12061        286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE-FYYTEYEV  364 (626)
Q Consensus       286 ~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~p~~~Y~~  364 (626)
                      .|+.+|.++.+...+..++.|+|+++  .+.+. ..+|.|+|+..+...+....    .......+.+.+| .+++.|.|
T Consensus         6 ~pP~~P~~l~~~~~~~~sv~l~W~~p--~~~~~-~~~Y~v~~~~~~~~~~~~~~----~~~~~~~~~i~~L~~~~t~Y~~   78 (215)
T 1bqu_A            6 LPPEKPKNLSCIVNEGKKMRCEWDGG--RETHL-ETNFTLKSEWATHKFADCKA----KRDTPTSCTVDYSTVYFVNIEV   78 (215)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECC--SCCSS-CCEEEEEEEETTEECCCEEC----CSSCTTEEECSSCCCTTSCEEE
T ss_pred             CCCCCCEeeEeEECCCCcEEEEcCCC--CCCCC-CceEEEEEEEcCCCcccccc----ccCCcceEEEcCCccccccEEE
Confidence            35578999998887778999999983  33333 47999999876532222111    1223356789999 99999999


Q ss_pred             EEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEee--ecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce
Q psy12061        365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA  442 (626)
Q Consensus       365 ~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~--~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~  442 (626)
                      +|.|.|..|.+. +....+.+....++.+|.++.+...  +.+++.|+|++|...    ++.+.+|.|+|+..+...+..
T Consensus        79 ~V~A~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~----~~~i~~Y~v~y~~~~~~~~~~  153 (215)
T 1bqu_A           79 WVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK----SVIILKYNIQYRTKDASTWSQ  153 (215)
T ss_dssp             EEEEEETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGG----GTSCEEEEEEEEETTCSSCEE
T ss_pred             EEEEEecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCC----CcceEEEEEEEccCCCCCceE
Confidence            999999999876 5555565555445558989988765  678999999988753    367999999998876443321


Q ss_pred             EEE-EecCccceEEEeCCccCceEEEEEEEeeCCCCCC---CCccEEEeecCCCCCCCC
Q psy12061        443 VYY-LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERTYRKAPQKPP  497 (626)
Q Consensus       443 ~~~-~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~---~s~~~~~~t~~~~p~~~p  497 (626)
                      ... ........+.|.+|+|++.|.|+|+|.|..|.|+   +|..+.++|.+.+|..+|
T Consensus       154 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~~~p  212 (215)
T 1bqu_A          154 IPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP  212 (215)
T ss_dssp             CCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred             eccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCCcCCC
Confidence            110 0134456799999999999999999999988855   677788899888776544

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.86  E-value=5.2e-21  Score=168.80  Aligned_cols=176  Identities=16%  Similarity=0.263  Sum_probs=132.0

Q ss_pred             CCCceEEEeee--cceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEE
Q psy12061        393 APQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVM  470 (626)
Q Consensus       393 ~p~~~~~~~~~--~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~  470 (626)
                      +|.++++..++  .+++.|+|++|.      ++.+.+|.|+|+......... ..........+.|.+|+|++.|.|+|+
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p~------~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~   74 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAPQ------PSHISKYILRWRPKNSVGRWK-EATIPGHLNSYTIKGLKPGVVYEGQLI   74 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECCS------STTCCEEEEEEEETTCSSCCE-EEEECTTCCEEEECSCCTTEEEEEEEE
T ss_pred             CceeEEEEecCCCCCEEEEEEeCCC------CCCceEEEEEEEECCCCCceE-EEecCCCccEEEecCCCCCCEEEEEEE
Confidence            57899888877  899999999983      145899999998765432222 222344456799999999999999999


Q ss_pred             EeeCCCCCCCCccEEEeecCC-----------CCCCCC----ceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEE
Q psy12061        471 AYNNAGEGPESERYLERTYRK-----------APQKPP----SAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE  535 (626)
Q Consensus       471 a~~~~g~s~~s~~~~~~t~~~-----------~p~~~p----~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~  535 (626)
                      |.|..|.|..+ .+.+.|...           .|..+|    .++++...+.+++.|+|+  +|   ++.|.+|.|+|+.
T Consensus        75 a~n~~G~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~--~p---~~~i~~Y~v~~~~  148 (201)
T 2ha1_A           75 SIQQYGHQEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWV--SA---SDTVSGFRVEYEL  148 (201)
T ss_dssp             EECTTSCEEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECC--CS---CTTEEEEEEEEEE
T ss_pred             EEecccccCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEe--CC---CCCccEEEEEEEE
Confidence            99999988754 445555432           133233    456777788999999999  44   4689999999885


Q ss_pred             eccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      .+....  ........+.+++.|.+|.|++.|.|+|+|+|..|.|++.
T Consensus       149 ~~~~~~--~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~  194 (201)
T 2ha1_A          149 SEEGDE--PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI  194 (201)
T ss_dssp             TTTCCC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEE
T ss_pred             CCCCCc--eeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccE
Confidence            433221  2334456778999999999999999999999999988755

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.86  E-value=5.5e-21  Score=163.73  Aligned_cols=152  Identities=20%  Similarity=0.269  Sum_probs=116.8

Q ss_pred             CCCCceEEEEeeeC--CCCCCeeEEEe--CCEEc----------cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCNPE--AAPKPKFVWKK--DGNII----------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~--g~p~p~i~W~~--~~~~i----------~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      +.+|++|+|.|...  +.|.+.|.|+|  ++..|          ..++|+.++.+|+|.|.+++.+|+|.|+|.|.|..|
T Consensus        11 g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g   90 (182)
T 1hnf_A           11 GALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG   90 (182)
T ss_dssp             EETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred             EecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCC
Confidence            57899999999653  35677999999  99887          357899999999999999999999999999999988


Q ss_pred             Cce--eeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEE
Q psy12061         68 MDE--SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE  145 (626)
Q Consensus        68 ~~~--~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~  145 (626)
                      ...  ..+.|.|..+..     .+.+.. .+.+++|.|.+.+.|.|  +|.|++||..+..             ....|.
T Consensus        91 ~~~~~~~~~L~V~~~~~-----~P~i~~-~~~~v~L~C~~~~~p~~--~~~W~~~g~~l~~-------------~~~~i~  149 (182)
T 1hnf_A           91 KNVLEKIFDLKIQERVS-----KPKISW-TCINTTLTCEVMNGTDP--ELNLYQDGKHLKL-------------SQRVIT  149 (182)
T ss_dssp             CEEEEEEEEEEEECCCC-----CCEEEE-ETTTTEEEEECSSCSSC--EEEEEESSCEEEE-------------ESSCEE
T ss_pred             ceeEEEEEEEEEcCcCC-----CCEEEE-ccCcEEEEeEccCCCCC--EEEEEECCEECCC-------------CCcEEE
Confidence            754  346777765321     111222 34579999999998854  6799999988821             122344


Q ss_pred             EeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        146 ITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       146 i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      +.. ...|+|.|+|.|.|..|..+....+.
T Consensus       150 ~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          150 HKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             EEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             Eec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            433 57899999999999999887776653

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.86  E-value=9.8e-21  Score=178.16  Aligned_cols=238  Identities=13%  Similarity=0.127  Sum_probs=137.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC----CcEEEccCCCCCCEEEEEEEEcCCCC-ceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~----g~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.    |.|+|++..+.  .+.....+    ++|.|.+++.+|+|.|+|.|.|..|. ....+.+.
T Consensus        12 v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~   85 (289)
T 3mjg_X           12 LNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY   85 (289)
T ss_dssp             CCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEE
T ss_pred             EeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEE
Confidence            5789999999999985    99999999883  34444443    36999999999999999999999887 22334444


Q ss_pred             EEeC-Cce--eeeCCCc--eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCC
Q psy12061         77 VLHG-PSY--YEQLPPK--ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF  151 (626)
Q Consensus        77 v~~~-p~~--~~~~~~~--~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  151 (626)
                      |... |..  +...+..  ..+.+|++++|.|.+. .|.|.+++.|.+++..+...         .. ....+.    ..
T Consensus        86 v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~---------~~-~~~~~~----~~  150 (289)
T 3mjg_X           86 IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP---------YD-HQRGFS----GI  150 (289)
T ss_dssp             EECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC---------EE-TTTEEE----EC
T ss_pred             EEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee---------ec-CCcCee----ee
Confidence            4332 222  2111121  7789999999999999 66666655555555554311         11 111111    25


Q ss_pred             CCCEeEEEEEEeCCCce-EEEEEEEEeCCCCCCCceEE-----EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCc
Q psy12061        152 ADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGVQV-----VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW  225 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~~~~-----~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w  225 (626)
                      .|+|.|+|.|.|..+.. +....|.+..+ .+| .+..     .......+.|.|....   .+...  +.|...+... 
T Consensus       151 ~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p-~i~~~~~~~~v~~G~~v~L~C~~~g---~p~p~--v~W~~~~~~~-  222 (289)
T 3mjg_X          151 FEDRSYICKTTIGDREVDSDAYYVYRLQV-SSI-NVSVNAVQTVVRQGENITLMCIVIG---NEVVN--FEWTYPRKES-  222 (289)
T ss_dssp             CCSSEEEEEEEETTEEEECCCEEEEECCC-CCC-CCEEEESCSEEETTSCEEEEEEEES---CSSBE--EEEECTTSSS-
T ss_pred             ccCcEEEEEEEeCCceeeeeeEEEEecCC-CCC-CcEEeCCcceeEcCCCEEEEEEECC---CCCcc--eEEEcCCccC-
Confidence            79999999999877654 33456666653 121 1111     1223455566665321   12111  2222111100 


Q ss_pred             eEeecceeeeeee----ccCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        226 FNVSEHVIGKEVD----RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       226 ~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                         ..........    .......+.|.+ +...+.+.|+|.|.|..|...
T Consensus       223 ---~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~  269 (289)
T 3mjg_X          223 ---GRLVEPVTDFLLDMPYHIRSILHIPS-AELEDSGTYTCNVTESVNDHQ  269 (289)
T ss_dssp             ---SCCCCCEEEESCTTTTEEEEEEEESS-CCSSCCEEEEEEEEETTTTEE
T ss_pred             ---CCcccccccccCCcceEEEEEEEEcc-cChhhCcEEEEEeecCCCCce
Confidence               0000000000    001223455555 899999999999999998553

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.86  E-value=2.4e-21  Score=194.30  Aligned_cols=174  Identities=18%  Similarity=0.229  Sum_probs=120.4

Q ss_pred             CCceEEEEeeeCC-CCCC-eeEEEeCCEEccCCCc--EEEc--c------CCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          4 EGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSGGR--RKIF--E------NGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         4 ~G~~~~l~C~~~g-~p~p-~i~W~~~~~~i~~~~~--~~~~--~------~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +|+.++|.|.+.| .|.| +|.|+|||.++..+..  ..+.  .      .+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus       130 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  209 (438)
T 1qgc_4          130 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI  209 (438)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE
T ss_pred             cCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce
Confidence            5889999999988 6777 9999999999865411  1111  1      236999999999999999999998887533


Q ss_pred             eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEecccc----------CCccCCCeeEe
Q psy12061         72 KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMD----------LNELETPNINI  139 (626)
Q Consensus        72 ~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~----------~~~~~~~~~~~  139 (626)
                      ...+.+..++..+. +|....+.+|++++|.|.+.+.|.+...+.|+|+  |..+....          .......++..
T Consensus       210 ~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  288 (438)
T 1qgc_4          210 VKSFNRNECEVMLV-ESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTI  288 (438)
T ss_dssp             EEEEETTC-CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEE
T ss_pred             ecccccccceeEEe-cCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEE
Confidence            33332212223333 3567889999999999999998854456799987  55442100          00001133332


Q ss_pred             c------CCeEEEeecCCCCCEeEEEEEEeCCC-----ceEEEEEEEEeC
Q psy12061        140 D------GGLLEITNASFADAGEYECVVKSTVG-----KISTKTTVIVEG  178 (626)
Q Consensus       140 ~------~~~l~i~~~~~~d~g~Y~C~a~n~~g-----~~~~~~~l~v~~  178 (626)
                      .      ...|.|.+++.+|+|.|+|.|.|..+     .....+.|.|..
T Consensus       289 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~  338 (438)
T 1qgc_4          289 SRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA  338 (438)
T ss_dssp             EEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECS
T ss_pred             EeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEec
Confidence            2      23899999999999999999999554     333456777774

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.86  E-value=1.3e-21  Score=188.22  Aligned_cols=169  Identities=15%  Similarity=0.200  Sum_probs=135.5

Q ss_pred             CCC---ceEEEEee-eCCCCCCeeEEEeCC--EEcc-----CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          3 GEG---GNVTIFCN-PEAAPKPKFVWKKDG--NIIG-----SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         3 ~~G---~~~~l~C~-~~g~p~p~i~W~~~~--~~i~-----~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      .+|   +.++|.|. +.|.|.|.|.|+|++  ....     .+..+.+  ...|.|..+..+|+|.|+|.|.|..|....
T Consensus       145 ~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  222 (331)
T 3u83_A          145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV--ISRYRLVPSREAHQQSLACIVNYHMDRFKE  222 (331)
T ss_dssp             CTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE--EEEEEECCCGGGTTCEEEEEEEETTEEEEE
T ss_pred             cCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE--EEEEEEEeccccCCCEEEEEEecCCCccee
Confidence            466   78999998 889999999999953  3221     1111111  134888888999999999999999998888


Q ss_pred             eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEe-ecC
Q psy12061         72 KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT-NAS  150 (626)
Q Consensus        72 ~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~  150 (626)
                      .+.|.|..+|.+...++....+..|++++|.|.+.+.|.|. .+.|++++..+...         ....++.|.|. ++.
T Consensus       223 ~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~i~W~~~~~~~~~~---------~~~~~~~L~i~~~v~  292 (331)
T 3u83_A          223 SLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPAT-EYHWTTLNGSLPKG---------VEAQNRTLFFKGPIN  292 (331)
T ss_dssp             EEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCC-EEEEEETTBSCCTT---------EEEETTEEEECSCCC
T ss_pred             eEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCC-EEEEEECCCccccc---------ceecCcEEEEeCCCc
Confidence            89999988888776677777889999999999999999874 36999999887532         34467899999 999


Q ss_pred             CCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        151 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      .+|+|.|+|.|.|..|..+..+.|.|...+...
T Consensus       293 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  325 (331)
T 3u83_A          293 YSLAGTYICEATNPIGTRSGQVEVNITEAAALE  325 (331)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEECCBC-----
T ss_pred             cccCeEEEEEEEeccccceEEEEEEEeccchhh
Confidence            999999999999999999999999998877654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.86  E-value=6.7e-21  Score=171.57  Aligned_cols=172  Identities=17%  Similarity=0.252  Sum_probs=122.7

Q ss_pred             CCCCceEEEEeeeCCCCC-----CeeEEEeCCEEcc---------------CCCcEEEccC------CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK-----PKFVWKKDGNIIG---------------SGGRRKIFEN------GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-----p~i~W~~~~~~i~---------------~~~~~~~~~~------g~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.+.|.|.     +.|.|+|++..+.               ..+|..+..+      .+|.|.+++.+|+
T Consensus        13 ~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   92 (222)
T 3sbw_C           13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDA   92 (222)
T ss_dssp             EETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccC
Confidence            568999999999988774     4899999764331               1256666543      2799999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC-CEEeccccCCccCC
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELET  134 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~~~~~~~~~~  134 (626)
                      |.|+|.|.| .|.....+.|.|..+|..... +....+..|++++|.|.+.+.|.|  .+.|+++ +..+......    
T Consensus        93 G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~g~~v~L~C~~~g~P~p--~i~W~~~~g~~~~~~~~~----  164 (222)
T 3sbw_C           93 GVYRCMISY-GGADYKRITVKVNAPYNKINQ-RILVVDPVTSEHELTCQAEGYPKA--EVIWTSSDHQVLSGKTTT----  164 (222)
T ss_dssp             EEEEEEEES-SSEEEEEEEEEEEBCCCCCEE-EEEEEETTTTEEEEEEEEEEBSCC--EEEEEETTCCEECCEEEE----
T ss_pred             eEEEEEEEe-CCCceeEEEEEEECCCCCCCc-eeeeeecCCCcEEEEEEecCCCCC--eEEEEECCCceecCccce----
Confidence            999999999 566677788888766543321 222367899999999999998876  5699998 6665432100    


Q ss_pred             CeeEecCCeEEE---eecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        135 PNINIDGGLLEI---TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       135 ~~~~~~~~~l~i---~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      ......++.+.+   ..+...|.|.|+|.|.|..|.....+.|.|..+|.
T Consensus       165 ~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          165 TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            000112222222   24567899999999999999999999999886653

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.86  E-value=2.1e-21  Score=174.50  Aligned_cols=172  Identities=16%  Similarity=0.188  Sum_probs=127.5

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEeCCEEccC------------------CCcEEEcc------CCcEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIGS------------------GGRRKIFE------NGNLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~i~~------------------~~~~~~~~------~g~L~i~~v~~~d   54 (626)
                      |.+|++++|.|.+.+.|.+   .|.|+|++..+..                  .+|+.+..      +++|.|.+++.+|
T Consensus        11 v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   90 (218)
T 4frw_A           11 VVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQAD   90 (218)
T ss_dssp             EETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGG
T ss_pred             EEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHH
Confidence            5789999999999998876   4899998764421                  12333221      3469999999999


Q ss_pred             CEEEEEEEEcCCCCcee-eEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccC
Q psy12061         55 SGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE  133 (626)
Q Consensus        55 ~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~  133 (626)
                      +|.|.|.+.+..+.... ...+.+..++......+....+..|+.+.|.|.+.+.|.|  .|.|++++..+........ 
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p--~i~W~~~~~~~~~~~~~~~-  167 (218)
T 4frw_A           91 EGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP--SVTWDTEVKGTTSSRSFKH-  167 (218)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC--EEEEEESSCCEEEEEEEEC-
T ss_pred             CCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc--eEEEEECCcccccCceEec-
Confidence            99999999987766444 3455555555555555667788899999999999999987  4589999888765421100 


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                       .......+.|.|.++...|.|.|+|.|.|..|..+..+.+.|.
T Consensus       168 -~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          168 -SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             -SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             -CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence             1111234579999999999999999999999988777766643

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.85  E-value=1.5e-21  Score=189.16  Aligned_cols=174  Identities=18%  Similarity=0.219  Sum_probs=101.2

Q ss_pred             CCCCceEEEEeee-----CCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC-CCc---eee
Q psy12061          2 AGEGGNVTIFCNP-----EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMD---ESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~-----~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~-g~~---~~~   72 (626)
                      +.+|+.++|.|.+     .|.|.|.|.|+|||.+|....++.. .+..|.|.+++.+|+|.|+|.|.|.. |..   ...
T Consensus       132 ~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~  210 (349)
T 4dep_C          132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP-EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT  210 (349)
T ss_dssp             ETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEE-ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             eecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceee-cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEE
Confidence            4689999999985     7889999999999999965544332 33569999999999999999999987 443   455


Q ss_pred             EEEEEEeC-----CceeeeCCCc--eEEecCCcEEEEEEecc----cCCcceeEEEeeCCEEeccc-cCCccCCC-----
Q psy12061         73 GRLIVLHG-----PSYYEQLPPK--ITIAAHRNLQLRCSAHT----EELLDVAYIWTHNGVRIGNM-DLNELETP-----  135 (626)
Q Consensus        73 ~~l~v~~~-----p~~~~~~~~~--~~v~~g~~~~l~C~~~~----~p~p~~~i~W~~~~~~~~~~-~~~~~~~~-----  135 (626)
                      ..|.|..+     |+.+..++..  ..+..|++++|.|.+.+    .|.|  .+.|+++|..+... ........     
T Consensus       211 ~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~  288 (349)
T 4dep_C          211 LTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRN--EVWWTIDGKKPDDITIDVTINESISHSR  288 (349)
T ss_dssp             EEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCC--EEEEESSCC--------CCCCEEEECCT
T ss_pred             EEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCC--EEEEEECCEEccccCCccccccceeeec
Confidence            66777653     3333333433  27889999999999995    4554  66999999988752 10000000     


Q ss_pred             -eeEecCCeEEEeecCCCCC-EeEEEEEEeCCCceEEEEEEEEeC
Q psy12061        136 -NINIDGGLLEITNASFADA-GEYECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       136 -~~~~~~~~l~i~~~~~~d~-g~Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                       ........|.|.+++.+|+ |.|+|.|.|..|..+..+.|.|..
T Consensus       289 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             TCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred             CCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence             0011234599999999999 999999999999999999998865

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.85  E-value=1.5e-20  Score=169.61  Aligned_cols=168  Identities=17%  Similarity=0.251  Sum_probs=115.4

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEeCCEE-----------cc------CCCcEEEccC------CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKKDGNI-----------IG------SGGRRKIFEN------GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~-----------i~------~~~~~~~~~~------g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.|.+   .|.|+|++..           +.      ...|......      .+|.|.+++.+|+
T Consensus        16 v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   95 (226)
T 4f80_A           16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDS   95 (226)
T ss_dssp             EETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHC
Confidence            5689999999999887655   7999987632           21      1234444332      3699999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEE-eccccCCccC
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVR-IGNMDLNELE  133 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~-~~~~~~~~~~  133 (626)
                      |.|+|.|.|..|.......+.+.  +... .++....+..|+.+.|.|.+.+. |.|  +|.|++++.. +....     
T Consensus        96 G~Y~C~a~n~~~~~~~~v~~~~~--~~~~-~~~~~~~~~~g~~v~l~c~~~g~~P~p--~i~W~k~~~~~~~~~~-----  165 (226)
T 4f80_A           96 GKYLCYFQDGDFYEKALVELKVA--ALGS-DLHVDVKGYKDGGIHLECRSTGWYPQP--QIQWSNNKGENIPTVE-----  165 (226)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE--BCCC-CCEEEEEEEETTEEEEEEEEEEEBSCC--EEEEECTTSCBCCCEE-----
T ss_pred             eeEEEEEECCCcEEEEEEEEeec--ccee-cccceeeeccCCceeeEEEeccCCCCC--EEEEEECCceEcCCCc-----
Confidence            99999999987766554444443  2222 23456778899999999999985 766  5689986544 33221     


Q ss_pred             CCeeEecCC---eEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        134 TPNINIDGG---LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       134 ~~~~~~~~~---~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      .......++   .+.+..++.+|+|.|+|.|.|..|..+..+.|.|.+|
T Consensus       166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            011222333   2445577889999999999999999999999988764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.85  E-value=9.9e-21  Score=175.40  Aligned_cols=150  Identities=15%  Similarity=0.201  Sum_probs=123.5

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe-
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH-   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~-   79 (626)
                      +.+|+.++|.|.+ .+.|.+.+.|+|+|..+...     ..++.|.|.+++.+|+|.|+|.|.|..+.....+.|.|.. 
T Consensus        94 ~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~  168 (262)
T 3rjd_A           94 FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL  168 (262)
T ss_dssp             EETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS
T ss_pred             EecCCeEEEEEEccCCCCCceEEEEECCcccccc-----CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC
Confidence            4589999999999 77888999999999988422     2356799999999999999999999998777888999986 


Q ss_pred             -CCceeeeCCCceEEecCCcEEEEEEecccCC-cc--eeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE
Q psy12061         80 -GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LD--VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG  155 (626)
Q Consensus        80 -~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  155 (626)
                       +++.+...+ ...+..|++++|.|.+.+.|. |.  ..+.|++++..+...           .....|.|.+++.+|+|
T Consensus       169 ~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~-----------~~~~~L~i~~v~~~d~G  236 (262)
T 3rjd_A          169 FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-----------NTSSEYQILTARREDSG  236 (262)
T ss_dssp             SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE-----------ESCCEEEESSCCGGGCE
T ss_pred             CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc-----------CCCceEEEEEechhhCe
Confidence             244444433 567889999999999999876 44  347899999988642           24568999999999999


Q ss_pred             eEEEEEEeCCCce
Q psy12061        156 EYECVVKSTVGKI  168 (626)
Q Consensus       156 ~Y~C~a~n~~g~~  168 (626)
                      .|+|.|.|..|..
T Consensus       237 ~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          237 LYWCEAATEDGNV  249 (262)
T ss_dssp             EEEEEEEETTSSC
T ss_pred             EEEEEEEcccCce
Confidence            9999999999975

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.85  E-value=3.6e-21  Score=169.50  Aligned_cols=157  Identities=19%  Similarity=0.326  Sum_probs=112.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe--
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH--   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~--   79 (626)
                      +.+|++++|.|.+   |.|.|.|+|||..|...    ...+++|.|.+++.+|+|.|+|.+.+..   .....|.|..  
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~v~~~~   84 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL----TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVYYRMGS   84 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE----ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEEEEC--
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC----CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEEEEEec
Confidence            4689999999999   78899999999988532    1245689999999999999999975532   2224455540  


Q ss_pred             ----------------------------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc
Q psy12061         80 ----------------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        80 ----------------------------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                                                  .+..+...|. ....+|++++|.|.  +.|.|.  +.|+|||..+....   
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~--i~W~k~~~~l~~~~---  156 (204)
T 1sy6_A           85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSE--ILWQHNDKNIGGDE---  156 (204)
T ss_dssp             ----------------------------------CCCC-EEEEETTEEEEECS--CCCSSC--EEEEETTEEESCCT---
T ss_pred             cccccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCc--eEEEECCEECCCcc---
Confidence                                        0222222222 22338999999998  667664  58999999986431   


Q ss_pred             cCCCeeEecCCeEEEeec-CCCCCEeEEEEEEeCCCce-EEEEEEEEe
Q psy12061        132 LETPNINIDGGLLEITNA-SFADAGEYECVVKSTVGKI-STKTTVIVE  177 (626)
Q Consensus       132 ~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~  177 (626)
                       ....+...++.|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.+.
T Consensus       157 -~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          157 -DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             -TCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             -CCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence             01223335889999999 9999999999999999963 556666543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.85  E-value=2.8e-21  Score=173.98  Aligned_cols=173  Identities=19%  Similarity=0.345  Sum_probs=123.0

Q ss_pred             CCCCCceEEEEeeeCCCCC-----CeeEEEeCCEEc-------------cCCCcEEEcc------CCcEEEccCCCCCCE
Q psy12061          1 YAGEGGNVTIFCNPEAAPK-----PKFVWKKDGNII-------------GSGGRRKIFE------NGNLLISPVSRDDSG   56 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~-----p~i~W~~~~~~i-------------~~~~~~~~~~------~g~L~i~~v~~~d~G   56 (626)
                      .|.+|++++|.|.+.+.|.     +.|.|+|++...             ...+|..+..      +++|.|.+++.+|+|
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G   85 (222)
T 4i0k_A            6 VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEG   85 (222)
T ss_dssp             CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCS
T ss_pred             EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCE
Confidence            3789999999999998864     699999987433             1245666654      567999999999999


Q ss_pred             EEEEEEEcCCCCceeeEEEEEEeCC--ceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEee-CCEEeccccCCcc
Q psy12061         57 IYSCTATNVHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTH-NGVRIGNMDLNEL  132 (626)
Q Consensus        57 ~Y~C~a~n~~g~~~~~~~l~v~~~p--~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~-~~~~~~~~~~~~~  132 (626)
                      .|+|.+.|. +.....+.|.|..++  +.+.. .....+..|++++|.|.+ .+.|.|  .+.|++ ++..+.....   
T Consensus        86 ~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~-~~~~~v~~G~~~~l~C~~~~g~P~~--~v~W~~~~~~~~~~~~~---  158 (222)
T 4i0k_A           86 SYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTL-EPNKDLRPGNMVTITCSSYQGYPEA--EVFWKDGQGVPLTGNVT---  158 (222)
T ss_dssp             CEEEEEEEC-CCCCCCCCCCCCBCCCCCEEEC-CC-----CCSEEEEEEEEEEEBSCC--EEEEECTTSCBCCSEEE---
T ss_pred             EEEEEEEeC-CCceEEEEEEEEcCCCCCcEEe-CCCceecCCceEEEEEecccccCCC--eEEEEcCCCccCCCCcc---
Confidence            999999986 444556677776542  22222 234467899999999999 777776  568999 5555543210   


Q ss_pred             CCCeeEecCC---eEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        133 ETPNINIDGG---LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       133 ~~~~~~~~~~---~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                       ........+   .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus       159 -~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          159 -TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             -EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred             -eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence             011111222   388999999999999999999999999999999998774

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.85  E-value=9.2e-20  Score=161.86  Aligned_cols=199  Identities=16%  Similarity=0.134  Sum_probs=148.1

Q ss_pred             CCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEE
Q psy12061        286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK  365 (626)
Q Consensus       286 ~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~  365 (626)
                      .|+.+|.++........++.++|++.  .+.+. ...|.|+|+..+...|..+............+.+.+|.+.+.|.|+
T Consensus         2 ~pP~~P~nl~c~~~~~~~~~c~W~p~--~~~~~-~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~   78 (210)
T 3n06_B            2 LPPGKPEIFKCRSPNKETFTCWWRPG--TDGGL-PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMM   78 (210)
T ss_dssp             CCCCCCEEEEEEBSSSSCEEEEEECC--SSSCC-CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEE
T ss_pred             CCCCCCeEeEEEeCCCCeEEEEECCC--CCCCC-CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEE
Confidence            35688999999988899999999983  34433 4689999998775666654321111223455556679999999999


Q ss_pred             EEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeee----cceEEEEeeeccccccccce-eeEEEEEEEEecCCCcc
Q psy12061        366 VQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFN----STAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEE  440 (626)
Q Consensus       366 v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~----~~si~l~W~~~~~~~~~~~~-~i~~Y~v~~~~~~~~~~  440 (626)
                      |.|.|..|.+. +....+.+...+++.+|.++.+....    .+++.|+|++|...... +| .+.+|.|+|+..+...+
T Consensus        79 V~A~N~~G~~~-s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~-~g~~~~~Y~v~y~~~~~~~~  156 (210)
T 3n06_B           79 VNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLK-TGWFTLLYEIRLKPEKAAEW  156 (210)
T ss_dssp             EEEEETTEEEE-CCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCT-TSSCCEEEEEEEECTTCSSC
T ss_pred             EEEEcCCCCee-CCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCcccc-CCeEEEEEEEEEecCCCCCC
Confidence            99999999874 55566666665666699999888654    57999999998754311 13 36899999988766444


Q ss_pred             ceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCC-CCCCccEEEeecCCC
Q psy12061        441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE-GPESERYLERTYRKA  492 (626)
Q Consensus       441 ~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~-s~~s~~~~~~t~~~~  492 (626)
                      ...   .......+.+.+|+|++.|.|+|+|.+..|. |++|..+.++|.++.
T Consensus       157 ~~~---~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp~~~  206 (210)
T 3n06_B          157 EIH---FAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDF  206 (210)
T ss_dssp             EEE---EEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECCTTC
T ss_pred             EEE---eccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECcCCC
Confidence            321   2234456999999999999999999999887 899999999987653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=4.9e-21  Score=172.98  Aligned_cols=169  Identities=14%  Similarity=0.187  Sum_probs=121.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC--ceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM--DESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~v   77 (626)
                      |.+|++|+|.|.+.+ +.+.+.|+|+|..+...  .......+++|.|.+++.+|+|.|+|.+.|..+.  .+....|.|
T Consensus        18 v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V   96 (242)
T 1p6f_A           18 VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV   96 (242)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEE
T ss_pred             cCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEe
Confidence            568999999999976 45699999999876421  1111123457999999999999999999886543  244577888


Q ss_pred             Ee---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCC
Q psy12061         78 LH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA  154 (626)
Q Consensus        78 ~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  154 (626)
                      ..   .|.+... | ...+.+|++++|.|.+.+.+.   .+.|+|+|..+...       .........|.|.+++.+|+
T Consensus        97 ~~~~~~P~i~~~-p-~~~v~~G~~vtL~C~~~~~~~---~~~w~k~g~~~~~~-------~~~~~~~~~l~I~~v~~~d~  164 (242)
T 1p6f_A           97 TEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDTATS---MFLLLKEGRSSHVQ-------RGYGKVQAEFPLGPVTTAHR  164 (242)
T ss_dssp             ECCSCCCEEEEE-S-CSEEETTCEEEEEEECTTSCS---EEEEEECSSSCEEE-------EEECSSEEEEEEEECCGGGC
T ss_pred             ecccCCCceEcc-C-CCccCCCCcEEEEEecCCCCC---EEEEEECCCccCcc-------ccCCCceEEEEeCCCccccC
Confidence            64   4444433 3 356899999999999886542   67999999766431       11122456899999999999


Q ss_pred             EeEEEEEEeCC---CceEEEEEEEEeCCCCCC
Q psy12061        155 GEYECVVKSTV---GKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       155 g~Y~C~a~n~~---g~~~~~~~l~v~~~P~~p  183 (626)
                      |.|+|.+.|..   ...+..+.|.|.+++..|
T Consensus       165 G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P  196 (242)
T 1p6f_A          165 GTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT  196 (242)
T ss_dssp             EEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred             EEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence            99999999864   245677889998876655

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.85  E-value=6.7e-19  Score=171.87  Aligned_cols=412  Identities=15%  Similarity=0.104  Sum_probs=236.5

Q ss_pred             eeEecCCeEEEeecCCCCCEeEEEEEE-eCCCceEEEEEEEEe---CCCCCCCceEEEEEec-cceEEEEecCCCC--CC
Q psy12061        136 NINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVE---GPPGLPGGVQVVEVHK-TSATIQWTDGATN--GR  208 (626)
Q Consensus       136 ~~~~~~~~l~i~~~~~~d~g~Y~C~a~-n~~g~~~~~~~l~v~---~~P~~p~~~~~~~~~~-~~~~l~W~~~~~~--~~  208 (626)
                      -.+..+....|..+...|  .+.|+-. ...|.......|..+   ..|.+|..+.+..... ..+.|+|......  ..
T Consensus        39 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~  116 (483)
T 3e0g_A           39 CYQLEKTSIKIPALSHGD--YEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHR  116 (483)
T ss_dssp             EEEESSSBCCEECCSSSC--CCEEEECSSCC----CCCEECCSCCEECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSC
T ss_pred             chhhhccceEeecCCccc--eEEEEcccCCCCCCceeEEEEcccceeccCCCceEEEEecCCCcEEEEEEeCCCCCCCcc
Confidence            344466788889888888  5566543 334444444444433   4688888888876655 8899999854221  11


Q ss_pred             cccEEEEEEeecCCCC--ceEeecceeeeeeeccCCceeEEEEeec-cCCceEEEEEEEe-cC---CccCCCCCCCCccc
Q psy12061        209 PITHYKIIARTNWNST--WFNVSEHVIGKEVDRYTGRKEASIENVL-VPWSTYEFKVIAG-NE---LGYGEPSSPSPQYN  281 (626)
Q Consensus       209 ~~~~y~v~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~y~~~v~a~-n~---~g~~~~s~~~~~~~  281 (626)
                      .-..|.|+..+....+  |...-.. .   ...-.+.....-..+| .+.+.+.+|+++. |.   .|.+.+|..+....
T Consensus       117 ~~~~~~i~i~r~~~~~~v~~~~~~~-~---~~~~~~~~~w~w~s~~plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~  192 (483)
T 3e0g_A          117 SNVIWEIKVLRKESMELVKLVTHQT-T---LNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQ  192 (483)
T ss_dssp             CEEEEEEEEESSSSCEEEEEEEEEE-C---GGGCCEEEEEEEECSSCTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEE
T ss_pred             cceEEEEEEEEcCCccEEEEEEEEE-E---ecCCCceEEEEecCCCCCCCCccEEEEEEEecccccCCCCCCcCCCChhh
Confidence            2446888777654432  2221110 0   0000112234444434 5678899999988 33   44333343331111


Q ss_pred             C---CCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcc
Q psy12061        282 T---PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY  358 (626)
Q Consensus       282 ~---~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p  358 (626)
                      .   ....+-.-|.+..+..+  ..+++....  ...    .    ... ..+........    -+.....+++.+|..
T Consensus       193 ~~~~~~~~~~ifP~~~vv~~G--S~vt~~Ci~--~~~----~----~~~-~l~~~~~~~~~----l~~~~~~i~v~nl~~  255 (483)
T 3e0g_A          193 ISWIPDSQTKVFPQDKVILVG--SDITFCCVS--QEK----V----LSA-LIGHTNCPLIH----LDGENVAIKIRNISV  255 (483)
T ss_dssp             ECCCCCSSCCEESCSEEEETT--CCEEEEECC--SSC----E----EEE-ESSSCCBCCEE----CSSSCEEEEECSCCC
T ss_pred             ccccCCCCcEEeccCCEEeCC--CCEEEEEEe--Ccc----c----cce-ecCcccceeEE----ecCCEEEEEEeCCCC
Confidence            1   11111233444444433  456666654  111    0    111 11111111111    122344566666643


Q ss_pred             ----eeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeecccccccccee-eEEEEEEEE
Q psy12061        359 ----YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR-LIGHRIKYW  433 (626)
Q Consensus       359 ----~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~-i~~Y~v~~~  433 (626)
                          ++.|.+..    . + ......+.    ...|+.+|.++.+...+..++.++|+++.+.+.  +|. ...|.|.|+
T Consensus       256 ~~~sg~n~~C~~----~-~-~~~g~~l~----vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l--~G~~~t~YtL~y~  323 (483)
T 3e0g_A          256 SASSGTNVVFTT----E-D-NIFGTVIF----AGYPPDTPQQLNCETHDLKEIICSWNPGRVTAL--VGPRATSYTLVES  323 (483)
T ss_dssp             CCSSCEEEEEEE----S-S-CEEEEEEE----EECCCCCCEEEEEEBSSTTEEEEEEECCSCCSC--CGGGCCEEEEEET
T ss_pred             ccCccceEEEec----C-C-cccceEEE----CcCCCCCCCccEEEecCCCEEEEEECCCCcCCc--CCCCCeeEEEEEE
Confidence                45554432    1 1 11111122    224556899999998888899999999875421  122 678999986


Q ss_pred             ecCCCccceEEEEe---cCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEE
Q psy12061        434 KEDNPEETAVYYLS---RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTV  510 (626)
Q Consensus       434 ~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~  510 (626)
                      ..+..   ......   ........+.+|.+.+.|.|+|.|.|..|.+. +. ..+.....+++.||.++++...+.+.+
T Consensus       324 ~~g~~---~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~-~~~~~~~~VkP~PP~nl~v~~~~stsl  398 (483)
T 3e0g_A          324 FSGKY---VRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST-ILVNITEKVYPHTPTSFKVKDINSTAV  398 (483)
T ss_dssp             TTCCE---EEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE-EEECGGGGBCCCCCEEEEECCSSSSSC
T ss_pred             ECCCC---ccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc-eEEEeccccCCCCCeeeEEEEecCCeE
Confidence            43221   111000   12344678999999999999999999998765 33 456555666777999999988888999


Q ss_pred             EEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeec---CccceEEecCCCCCceEEEEEEEEecCCC---CCCCC
Q psy12061        511 HVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV---GNTLDADIVDLSPGKRYHMRVLAFSNGGD---GRMSS  584 (626)
Q Consensus       511 ~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~---g~~s~  584 (626)
                      .|+|+  +|...++.+..|+|+|+..+....  .......   .....+.+.+|.|++.|.|+|+|. ..|.   |++|+
T Consensus       399 ~LsW~--~P~~~~~~~L~YeVrYr~~~~~~~--~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~  473 (483)
T 3e0g_A          399 KLSWH--LPGNFAKINFLCEIEIKKSNSVQE--QRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSN  473 (483)
T ss_dssp             CEEEE--CCSCCTTSBCCCEEEEECSSSCCC--EEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCC
T ss_pred             EEEEC--CCCCCCCceEEEEEEEEECCCCCc--eEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCC
Confidence            99999  455566778899999987654321  1111111   234468899999999999999999 7777   56665


Q ss_pred             CcEEEeecc
Q psy12061        585 PAITFQMGE  593 (626)
Q Consensus       585 ~~~~~~~~~  593 (626)
                      + ..|+|.+
T Consensus       474 ~-~~f~T~E  481 (483)
T 3e0g_A          474 K-KQHLTTE  481 (483)
T ss_dssp             C-CCCCCCC
T ss_pred             c-eeeECCC
Confidence            4 3465543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.85  E-value=2.4e-20  Score=187.01  Aligned_cols=170  Identities=15%  Similarity=0.250  Sum_probs=119.2

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEEcc-----------------CCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-----------------SGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~i~-----------------~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.+.|.+  .+.|.|+|+  +..+.                 ..+|+.+..+     ++|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   91 (444)
T 1igt_B           12 VQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDT   91 (444)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHC
Confidence            57899999999998875  579999985  33210                 2357777643     3799999999999


Q ss_pred             EEEEEEEEcCCCC---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccc
Q psy12061         56 GIYSCTATNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNM  127 (626)
Q Consensus        56 G~Y~C~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~  127 (626)
                      |.|+|.|.|..+.   ....+.|.|..    +|.+...+|.. .+.+|+.++|.|.+.+. |.| +.+.|++++..+...
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~  169 (444)
T 1igt_B           92 AMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVH  169 (444)
T ss_dssp             EEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSC-CEEEEGGGTBCTTEE
T ss_pred             EEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccc-cCCCCCcEEEEEEEcceeCCC-cEEEEecCCCCCCeE
Confidence            9999999998665   22346788763    45554433333 34799999999999986 544 477999998764211


Q ss_pred             cCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        128 DLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       128 ~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      .... .....+. ..+.|.|.++..+| |.|+|.|.|..|.......+.
T Consensus       170 ~~~~~~~~~~~~-~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~  216 (444)
T 1igt_B          170 TFPAVLQSDLYT-LSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE  216 (444)
T ss_dssp             ECCCEEETTEEE-EEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECC
T ss_pred             ecCccccCCcEE-EEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEec
Confidence            1000 0011121 23579999999899 999999999999865555543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.85  E-value=1.6e-21  Score=177.00  Aligned_cols=170  Identities=15%  Similarity=0.223  Sum_probs=124.8

Q ss_pred             CCCCceEEEEeeeCCCCC-CeeEEEeCCEEcc-------------CCCcEE----------EccCCcEEEccCCCCCCEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIG-------------SGGRRK----------IFENGNLLISPVSRDDSGI   57 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~i~-------------~~~~~~----------~~~~g~L~i~~v~~~d~G~   57 (626)
                      +.+|++++|.|.+.+.|. +.|.|+|++....             -..|+.          +..++.|.|.+++.+|+|.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   91 (231)
T 2pet_A           12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERD   91 (231)
T ss_dssp             EETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGGGCEE
T ss_pred             EEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcccCce
Confidence            568999999999999985 8999998544311             123444          6667889999999999999


Q ss_pred             EEEEEEcCC-CCceeeEEEEEEeCCce--eeeCCCceEEecCCcE-EEEEEe-cccCCcceeEEEeeCCEEeccccCCcc
Q psy12061         58 YSCTATNVH-GMDESKGRLIVLHGPSY--YEQLPPKITIAAHRNL-QLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNEL  132 (626)
Q Consensus        58 Y~C~a~n~~-g~~~~~~~l~v~~~p~~--~~~~~~~~~v~~g~~~-~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~  132 (626)
                      |+|.|.|.. +.....+.|.|..+|..  +...+....+..|+++ +|.|.+ .+.|.|  .+.|+++|..+......  
T Consensus        92 Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p--~i~W~~~~~~~~~~~~~--  167 (231)
T 2pet_A           92 YVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP--KITWYRNGQRLEVPVEM--  167 (231)
T ss_dssp             EEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC--EEEEEETTEECCCCSSC--
T ss_pred             EEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC--EEEEEECCccCcccccc--
Confidence            999999987 77777889999887643  3344566777899988 999999 888877  56899999998754310  


Q ss_pred             CCCeeEec-------------CCeEEEeecCCCCCEeEEEEEEeC-----CCc-eEEEEEEEE
Q psy12061        133 ETPNINID-------------GGLLEITNASFADAGEYECVVKST-----VGK-ISTKTTVIV  176 (626)
Q Consensus       133 ~~~~~~~~-------------~~~l~i~~~~~~d~g~Y~C~a~n~-----~g~-~~~~~~l~v  176 (626)
                       ..+..+.             .+.|.|......|.|.|+|.|.|.     .|. .+..+.|.|
T Consensus       168 -~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          168 -NPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             -CSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             -ccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence             0111111             156888755555699999999994     444 444444443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.85  E-value=5.2e-21  Score=184.52  Aligned_cols=168  Identities=16%  Similarity=0.276  Sum_probs=118.3

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEEc-----------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNII-----------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~i-----------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.+.|.+  .+.|.|+|+  |..+                 ...+|+.+..+     ++|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   91 (344)
T 1za6_B           12 VKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDT   91 (344)
T ss_dssp             ECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccC
Confidence            57899999999998873  679999996  3322                 12467777643     3799999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      |.|+|.|.|..+.....+.|.|..    +|.+...++ ...+..|++++|.|.+.+.++..+.|.|+|+|..+.......
T Consensus        92 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  170 (344)
T 1za6_B           92 AVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA  170 (344)
T ss_dssp             EEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECC-SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCC
T ss_pred             EEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccc-cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCC
Confidence            999999999665555667888873    344443333 334679999999999998743224679999997643211100


Q ss_pred             --cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061        132 --LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       132 --~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                        ....++. ..+.|.|.+++..| |.|+|.|.|..|......
T Consensus       171 ~~~~~~~~~-~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~  211 (344)
T 1za6_B          171 VLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  211 (344)
T ss_dssp             EECTTSCEE-EEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEE
T ss_pred             eECCCCCEE-EEEEEEEcHHHcCC-CcEEEEEEeCCCCccceE
Confidence              0112221 22479999988878 999999999988754333

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.85  E-value=1.2e-19  Score=161.04  Aligned_cols=194  Identities=16%  Similarity=0.136  Sum_probs=139.1

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEE--eCCccCceEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALI--VGLQPDTKYY  466 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i--~~L~p~t~Y~  466 (626)
                      .|+.+|.++++...+..++.++|+++.+.+     ....|.|+|+......+...............+  .+|.+++.|.
T Consensus         2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~~~-----~~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~   76 (210)
T 3n06_B            2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGG-----LPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYI   76 (210)
T ss_dssp             CCCCCCEEEEEEBSSSSCEEEEEECCSSSC-----CCSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEE
T ss_pred             CCCCCCeEeEEEeCCCCeEEEEECCCCCCC-----CCceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEE
Confidence            355689999999889999999999877432     246899999876533221110001112233444  5799999999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC----CCEEEEEEeecCCCCC-CC-ceeeEEEEEEEeccCC
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN----PTTVHVTWRYVSPSFE-EE-PIIGYKVRVWEVDQDM  540 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~----~~~~~l~W~~~~~~~~-~~-~i~~Y~i~~~~~~~~~  540 (626)
                      |+|.|.|..|.+. +..+.+.+...+++.||.++.+...+    .+++.|+|++|..... +| .+.+|+|+|+..+...
T Consensus        77 ~~V~A~N~~G~~~-s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~  155 (210)
T 3n06_B           77 MMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE  155 (210)
T ss_dssp             EEEEEEETTEEEE-CCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSS
T ss_pred             EEEEEEcCCCCee-CCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCC
Confidence            9999999998873 44566777766777899999888664    5899999995433221 24 4689999998765432


Q ss_pred             ccccceeeecCccceEEecCCCCCceEEEEEEEEecCCC-CCCCCCcEEEeecc
Q psy12061        541 SRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD-GRMSSPAITFQMGE  593 (626)
Q Consensus       541 ~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~-g~~s~~~~~~~~~~  593 (626)
                      .    ........+.+.|.+|.|++.|.|+|+|.+..|. |++|.+ +.|+|.+
T Consensus       156 ~----~~~~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~-~~~~Tp~  204 (210)
T 3n06_B          156 W----EIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPA-TFIQIPS  204 (210)
T ss_dssp             C----EEEEEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCC-EEEECCT
T ss_pred             C----EEEeccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCc-eeEECcC
Confidence            1    2223345678999999999999999999999997 999965 4577653

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.85  E-value=3.5e-19  Score=156.98  Aligned_cols=174  Identities=17%  Similarity=0.252  Sum_probs=133.8

Q ss_pred             CCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEe
Q psy12061        290 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI  369 (626)
Q Consensus       290 ~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~  369 (626)
                      +|.++.+...+.+++.|+|+++.    ++.+.+|.|+|+..+...+......   ......+.+.+|.|++.|.|+|+|.
T Consensus        25 ~P~~l~~~~~~~~sv~lsW~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~a~   97 (203)
T 2gee_A           25 QPTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFV---DSSVGYYTVTGLEPGIDYDISVYTV   97 (203)
T ss_dssp             CCEEEEEECCTTTCEEEEEECCS----SSSCCEEEEEEEESSSSSCCEEEEE---ETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCccEEEecCCCEEEEEecCCC----CCCccEEEEEEEECCCCCCceeEEc---CCCccEEEeCCCCCCCEEEEEEEEE
Confidence            68899999999999999999832    3578999999998774433222111   1234567899999999999999999


Q ss_pred             cCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecC
Q psy12061        370 NDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT  449 (626)
Q Consensus       370 n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~  449 (626)
                      |..|.+.+   ..+.+....|  +|.++++...+.+++.|+|++|..      +.+.+|.|+|+........ .......
T Consensus        98 ~~~g~s~~---~~~~t~~~~p--~P~~l~~~~~~~~sv~l~W~~p~~------~~i~~Y~v~~~~~~~~~~~-~~~~~~~  165 (203)
T 2gee_A           98 KNGGESTP---TTLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPPPS------IDLTNFLVRYSPVKNEEDV-AELSISP  165 (203)
T ss_dssp             SSSCBCCC---EEEEEECCCC--CCEEEEEEEEETTEEEEEEECCSS------CCCSEEEEEEEETTCGGGC-EEEEECT
T ss_pred             eCCCcccc---EeeeecCCCc--CCCceEEEEcCCCEEEEEEcCCCC------CCccEEEEEEEECCCCCcc-EEEEcCC
Confidence            98887554   3444545444  788999999999999999999852      4688999999876554322 2233455


Q ss_pred             ccceEEEeCCccCceEEEEEEEeeCCCCCCCCc
Q psy12061        450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE  482 (626)
Q Consensus       450 ~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~  482 (626)
                      ....+.+.+|+|++.|.|+|+|.|..|.|++..
T Consensus       166 ~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  198 (203)
T 2gee_A          166 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  198 (203)
T ss_dssp             TCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CcCEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence            667799999999999999999999999887653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.84  E-value=2.1e-21  Score=193.96  Aligned_cols=170  Identities=15%  Similarity=0.247  Sum_probs=120.4

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc----c-------------CCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII----G-------------SGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i----~-------------~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.+.|.+  .+.|.|+|++  ..+    .             ..+|+.+..+     .+|.|.+++.+|+
T Consensus        11 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   90 (434)
T 1igy_B           11 ARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDS   90 (434)
T ss_dssp             ECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGC
T ss_pred             ecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHC
Confidence            57899999999999874  6799999963  221    0             1357777653     3799999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCC
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLN  130 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~  130 (626)
                      |.|+|.|.|..+.....+.|.|..    +|.+...++. ..+.+|+.++|.|.+.+. |.| +.+.|+|++..+......
T Consensus        91 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p-~~v~W~k~~~~~~~~~~~  168 (434)
T 1igy_B           91 AVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFP  168 (434)
T ss_dssp             SEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSC-CEEEETTTTBCSSEEECC
T ss_pred             EEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCc-cccCCCCcEEEEEEEeeecCCC-eEEEEeeCCcCCCeEecC
Confidence            999999999765555667888863    4545443333 335799999999999987 543 477999998764211100


Q ss_pred             cc-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        131 EL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       131 ~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      .. ....+. ..+.|.|.+++.+| |.|+|.|.|..|.......+.
T Consensus       169 ~~~~~~~~~-~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~  212 (434)
T 1igy_B          169 AVLQSDLYT-LSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIV  212 (434)
T ss_dssp             CEECSSCEE-EEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECC
T ss_pred             ceecCCcEE-EEEEEEEcchhcCC-CcEEEEEEeCCCCccceeecc
Confidence            00 011111 23579999999889 999999999999865555443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.84  E-value=2.3e-20  Score=173.58  Aligned_cols=181  Identities=17%  Similarity=0.205  Sum_probs=122.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCE-----Ec---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN-----II---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|.+.+.|.+.|.|+|++.     .+         ...+|+.+..++   +|.|.+++.+|+|.|+|.|.|
T Consensus        24 v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n  103 (276)
T 3auv_A           24 ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHY  103 (276)
T ss_dssp             CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEEEec
Confidence            6799999999999999999999998541     12         124577665444   799999999999999999999


Q ss_pred             CCCC-ceeeEEEEEEeCC-------------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EEec---
Q psy12061         65 VHGM-DESKGRLIVLHGP-------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VRIG---  125 (626)
Q Consensus        65 ~~g~-~~~~~~l~v~~~p-------------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~~~---  125 (626)
                      ..+. ....+.|.|..+|             .+....|....+.+|++++|.|.+.+.+.+...+.|+|++  ....   
T Consensus       104 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~  183 (276)
T 3auv_A          104 TTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVA  183 (276)
T ss_dssp             SSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEE
T ss_pred             CCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEE
Confidence            8665 3344678776653             2333335678999999999999999877434577999963  2210   


Q ss_pred             ---cc----cCCccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeCC---Cc--eEEEEEEEEeCCCCC
Q psy12061        126 ---NM----DLNELETPNINID------GGLLEITNASFADAGEYECVVKSTV---GK--ISTKTTVIVEGPPGL  182 (626)
Q Consensus       126 ---~~----~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~~---g~--~~~~~~l~v~~~P~~  182 (626)
                         ..    ........++...      ...|.|.+++.+|+|.|+|.|.|..   +.  ......|.|...|..
T Consensus       184 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~~~  258 (276)
T 3auv_A          184 GITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSASAA  258 (276)
T ss_dssp             EECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC-----
T ss_pred             EEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcccccc
Confidence               00    0000112344432      2389999999999999999999983   22  234567777655544

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.84  E-value=8.1e-20  Score=161.14  Aligned_cols=176  Identities=18%  Similarity=0.212  Sum_probs=130.7

Q ss_pred             CCceeEeecCC--cCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        290 APSRIGGGGGK--IGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       290 ~p~~~~~~~~~--~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      +|.++.+...+  .+++.|+|+++    .++.+.+|.|+|+..+ ...|......    .....+.+.+|.|++.|.|+|
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p----~~~~i~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~~V   73 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAP----QPSHISKYILRWRPKNSVGRWKEATIP----GHLNSYTIKGLKPGVVYEGQL   73 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECC----SSTTCCEEEEEEEETTCSSCCEEEEEC----TTCCEEEECSCCTTEEEEEEE
T ss_pred             CceeEEEEecCCCCCEEEEEEeCC----CCCCceEEEEEEEECCCCCceEEEecC----CCccEEEecCCCCCCEEEEEE
Confidence            57788888766  89999999983    3568999999999765 3556554332    123468899999999999999


Q ss_pred             EEecCCCCCCCCccEEEEccCC-----------CCCCCC----CceEEEeeecceEEEEeeeccccccccceeeEEEEEE
Q psy12061        367 QAINDVGPGPESEVVTIFSAED-----------MPQVAP----QGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIK  431 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~-----------~p~~~p----~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~  431 (626)
                      .|.|..|.+.++ ...+.|...           .|..+|    .++++...+.+++.|+|++|.       +.+.+|.|+
T Consensus        74 ~a~n~~G~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p~-------~~i~~Y~v~  145 (201)
T 2ha1_A           74 ISIQQYGHQEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSAS-------DTVSGFRVE  145 (201)
T ss_dssp             EEECTTSCEEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCSC-------TTEEEEEEE
T ss_pred             EEEecccccCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCCC-------CCccEEEEE
Confidence            999999988754 344443321           133233    466777888999999999884       458999999


Q ss_pred             EEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCc
Q psy12061        432 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE  482 (626)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~  482 (626)
                      |+......... .........++.|.+|+|++.|.|+|+|.|..|.|+...
T Consensus       146 ~~~~~~~~~~~-~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s  195 (201)
T 2ha1_A          146 YELSEEGDEPQ-YLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLIL  195 (201)
T ss_dssp             EEETTTCCCCE-EEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEE
T ss_pred             EEECCCCCcee-EEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEe
Confidence            98654333322 223345567799999999999999999999999876543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.84  E-value=3.1e-21  Score=172.10  Aligned_cols=167  Identities=17%  Similarity=0.219  Sum_probs=120.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEcc------------CCCcEEEccC---CcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIG------------SGGRRKIFEN---GNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i~------------~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.  |.+.|.|+|+  +..+.            ..+|+.+...   .+|.|.+++.+|+|.|+|.|.|
T Consensus        12 v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   89 (211)
T 3tv3_L           12 GSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLV   89 (211)
T ss_dssp             ECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             EcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEec
Confidence            57899999999999  8899999993  32221            2356654332   3699999999999999999999


Q ss_pred             CCC--CceeeEEEEEE----eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCC----ccCC
Q psy12061         65 VHG--MDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN----ELET  134 (626)
Q Consensus        65 ~~g--~~~~~~~l~v~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~----~~~~  134 (626)
                      ..+  .....+.|.|.    .+|.+...+ ....+..|++++|.|.+.+.++|.+.+.|+|||..+......    ....
T Consensus        90 ~~~~~~~~~~~~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~  168 (211)
T 3tv3_L           90 GNWDVIFGGGTKLTVLGQPKAAPSVTLFP-PSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN  168 (211)
T ss_dssp             TTTEEEECCCEEEEECCSCCBCCEEEEEC-CCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTT
T ss_pred             CCCceeECCCceEEEeCCCCcCCeeEecC-CchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCC
Confidence            988  35556788887    455554443 333344799999999999976555688999999998642100    0001


Q ss_pred             CeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061        135 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       135 ~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      ..+ ...+.|.|..+..+|.|.|+|.|.|..+.....+
T Consensus       169 ~~~-~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          169 NKY-AASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             SSE-EEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCE-EEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            111 1124688999988899999999999987665554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=6.1e-21  Score=175.55  Aligned_cols=180  Identities=16%  Similarity=0.199  Sum_probs=125.7

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEE---cc-------------CCCcEEEccC-----CcEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---IG-------------SGGRRKIFEN-----GNLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~---i~-------------~~~~~~~~~~-----g~L~i~~v~~~d~G   56 (626)
                      |.+|++|+|.|.+.|.|  .+.|.|+|+  +..   +.             ..+|+.+..+     .+|.|.+++.+|+|
T Consensus        12 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG   91 (257)
T 1f3r_B           12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTG   91 (257)
T ss_dssp             ECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCE
T ss_pred             ccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCE
Confidence            57899999999999985  689999995  221   10             1467777543     27999999999999


Q ss_pred             EEEEEEEcCCC-------C--ceeeEEEEEEeCC--------------ceeeeCCCceEEecCCcEEEEEEecccCCcce
Q psy12061         57 IYSCTATNVHG-------M--DESKGRLIVLHGP--------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDV  113 (626)
Q Consensus        57 ~Y~C~a~n~~g-------~--~~~~~~l~v~~~p--------------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~  113 (626)
                      .|.|.|.|..|       .  ....+.|.|...|              ..+...|..+.+.+|++++|.|.+.+.|.+  
T Consensus        92 ~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--  169 (257)
T 1f3r_B           92 TYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN--  169 (257)
T ss_dssp             EEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT--
T ss_pred             EEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC--
Confidence            99999999865       1  1234678887643              234445677889999999999999998876  


Q ss_pred             eEEEee--CCEEeccc-----cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCC
Q psy12061        114 AYIWTH--NGVRIGNM-----DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL  182 (626)
Q Consensus       114 ~i~W~~--~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~  182 (626)
                      .+.|+|  +|..+...     ........++..    ....|.|.+++.+|+|.|+|.|.|........+.|.|...+..
T Consensus       170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~~~  249 (257)
T 1f3r_B          170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAEQK  249 (257)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSCCC
T ss_pred             cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCCCcC
Confidence            568999  55543110     000000123322    2347999999999999999999997522234456777665544


Q ss_pred             C
Q psy12061        183 P  183 (626)
Q Consensus       183 p  183 (626)
                      +
T Consensus       250 ~  250 (257)
T 1f3r_B          250 L  250 (257)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.84  E-value=3.2e-20  Score=158.02  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=110.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc------------CCCcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG------------SGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~------------~~~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +.+|++|+|.|.+.+ |.+.|.|+|++..|.            ..+|..+. .+|+|.|.+++.+|+|.|+|.|.|..| 
T Consensus         7 ~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-   84 (171)
T 1ccz_A            7 GVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD-   84 (171)
T ss_dssp             EETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS-
T ss_pred             EEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC-
Confidence            678999999999955 889999999887542            12455553 578999999999999999999999887 


Q ss_pred             ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEee
Q psy12061         69 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN  148 (626)
Q Consensus        69 ~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  148 (626)
                       ...+.|.|..++..     ..+.+. +...+|.|.+.+.|.|  +|.|+++|..+...            ....|.+.+
T Consensus        85 -~~~~~L~V~~~~~~-----p~i~~~-~~~~~L~C~~~~~p~p--~i~W~~~~~~l~~~------------~~~~l~~~~  143 (171)
T 1ccz_A           85 -TMKFFLYVLEMVSK-----PMIYWE-CSNATLTCEVLEGTDV--ELKLYQGKEHLRSL------------RQKTMSYQW  143 (171)
T ss_dssp             -CEEEEEEEECCCCC-----CEEEEE-TTTTEEEEECSSCSSC--EEEEEETTEEEEEE------------SSSEEEEEC
T ss_pred             -cEEEEEEEECcCCC-----CEEEEe-cCCcEEEEEeCCCCCc--EEEEEECCEECcCC------------cceEEEEec
Confidence             66778888765321     111121 1124899999998765  56999999988642            122344443


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        149 ASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                        .+|+|.|+|.|.|..|..+..+.|
T Consensus       144 --~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          144 --TNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             --SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             --cCCCceEEEEEEcccCcccceeEE
Confidence              688999999999999987776655

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.84  E-value=1.2e-20  Score=168.46  Aligned_cols=169  Identities=18%  Similarity=0.240  Sum_probs=117.9

Q ss_pred             CCCCceEEEEeeeCCCC---CCeeEEEeC--CEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP---KPKFVWKKD--GNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p---~p~i~W~~~--~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++++|.|.+.|.|   .+.|.|+|+  |..+            ...+|+.+..++   +|.|.+++.+|+|.|.|.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (212)
T 1q0x_L           12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCA   91 (212)
T ss_dssp             ECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEEEE
Confidence            57899999999999987   479999995  2222            123566655433   799999999999999999


Q ss_pred             EEcCCCCce-eeEEEEEE----eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc---cC
Q psy12061         62 ATNVHGMDE-SKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LE  133 (626)
Q Consensus        62 a~n~~g~~~-~~~~l~v~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~---~~  133 (626)
                      |.|..+... ..+.|.|.    .+|.+...++. ..+..|+.++|.|.+.+.+++.++|.|+|||..+.......   ..
T Consensus        92 ~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  170 (212)
T 1q0x_L           92 LWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQ  170 (212)
T ss_dssp             EECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeC
Confidence            999876432 34567774    24444433332 23447999999999999765556789999999986531000   00


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      ........+.|.|..+..+|.|.|+|.|.|.......+
T Consensus       171 ~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          171 SNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             TTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            00000122468999999999999999999987654443

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.84  E-value=8.5e-20  Score=162.92  Aligned_cols=194  Identities=12%  Similarity=0.081  Sum_probs=134.9

Q ss_pred             CCCCCCCceEEEee-ecceEEEEeeeccccccccceeeEEEEEEEEecCCCc---cceEE-EE--ecCccceEEEeCCcc
Q psy12061        389 MPQVAPQGVFSRGF-NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE---ETAVY-YL--SRTTRNWALIVGLQP  461 (626)
Q Consensus       389 ~p~~~p~~~~~~~~-~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~---~~~~~-~~--~~~~~~~~~i~~L~p  461 (626)
                      .|+.+|.++.+... ..+++.++|+++.+.+     ....|.|+|+......   ..... ..  .......+.+.+|.+
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~~-----~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~   77 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETH-----LPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLL   77 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCS-----SCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCT
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCCCC-----CceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCccccc
Confidence            46668999998877 6789999999876532     2456999998654321   11111 11  122334567789999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeee------CCCEEEEEEeecCCCCCCCceeeEEEEEE-
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI------NPTTVHVTWRYVSPSFEEEPIIGYKVRVW-  534 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~------~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~-  534 (626)
                      ++.|.|+|.|.|..|.+ .+..+.+.+...+++.||.++.+...      ..+++.|+|++  |...+..+.+|+|+|+ 
T Consensus        78 ~~~Y~~~V~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~--p~~~~~~~l~Y~v~y~~  154 (215)
T 1cd9_B           78 YQYMAIWVQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKP--WKPSEYMEQECELRYQP  154 (215)
T ss_dssp             TSCEEEEEEEEETTEEE-ECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEEC--CGGGTTSCEEEEEEEEE
T ss_pred             ceEEEEEEEEECCCCCc-cCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeC--CCCCCeEEEEEEEEEcc
Confidence            99999999999999875 34556777777677789999988776      67889999994  4444444579999998 


Q ss_pred             EeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCC--cEEEeec
Q psy12061        535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP--AITFQMG  592 (626)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~--~~~~~~~  592 (626)
                      ..+...+.  .........+.+.|.+|.|++.|.|+|+|++..|.|.+|+.  .+.++|.
T Consensus       155 ~~~~~~w~--~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~  212 (215)
T 1cd9_B          155 QLKGANWT--LVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT  212 (215)
T ss_dssp             SSTTCCCE--EEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCC
T ss_pred             CCCCCCcE--EEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecC
Confidence            44333211  11122345678999999999999999999999887664432  2445554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=2.1e-20  Score=171.24  Aligned_cols=174  Identities=16%  Similarity=0.217  Sum_probs=122.9

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc-----------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII-----------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.+.|.|  .+.|.|+|++  ..+                 ...+|+.+..+     .+|.|.+++.+|+
T Consensus        14 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~   93 (247)
T 2ghw_B           14 VQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDT   93 (247)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHC
Confidence            57899999999999987  6789999842  111                 12357777543     2699999999999


Q ss_pred             EEEEEEEEcCCCC--ceeeEEEEEEeC--------------CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee
Q psy12061         56 GIYSCTATNVHGM--DESKGRLIVLHG--------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH  119 (626)
Q Consensus        56 G~Y~C~a~n~~g~--~~~~~~l~v~~~--------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~  119 (626)
                      |.|+|.|.|..+.  ....+.|.|...              +..+..+|....+.+|++++|.|.+.+.|.+  .+.|+|
T Consensus        94 G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k  171 (247)
T 2ghw_B           94 AVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS--NLAWYQ  171 (247)
T ss_dssp             EEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT--CEEEEE
T ss_pred             EEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc--eEEEEE
Confidence            9999999997332  233467888654              3334455778889999999999999999876  568999


Q ss_pred             --CCEEeccc-----cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEe
Q psy12061        120 --NGVRIGNM-----DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVE  177 (626)
Q Consensus       120 --~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~  177 (626)
                        ++..+...     ........++..    ....|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       172 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          172 QKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             ECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence              55543110     000000123322    23469999999999999999999865433 445567776

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.84  E-value=1.6e-20  Score=166.06  Aligned_cols=161  Identities=14%  Similarity=0.242  Sum_probs=115.1

Q ss_pred             CCCCceEEEEeeeC----CCCCCeeEEEeCCEEcc------------CCCcEEE--ccCCcEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPE----AAPKPKFVWKKDGNIIG------------SGGRRKI--FENGNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~----g~p~p~i~W~~~~~~i~------------~~~~~~~--~~~g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      |.+|++++|.|.+.    +.|.+.+.|+|++..+.            ..+|..+  ..+++|.|.+++.+|+|.|+|.|.
T Consensus         6 v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   85 (201)
T 1dr9_A            6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL   85 (201)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEE
T ss_pred             EEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEEE
Confidence            56899999999995    34778999999998872            0234433  234589999999999999999999


Q ss_pred             cCCCCce-----eeEEEEEEeCCceeeeCCCc--eEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCC
Q psy12061         64 NVHGMDE-----SKGRLIVLHGPSYYEQLPPK--ITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETP  135 (626)
Q Consensus        64 n~~g~~~-----~~~~l~v~~~p~~~~~~~~~--~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~  135 (626)
                      |..|...     ....|.|..++..    |..  .....|+.++|.|.+. +.|.|  +|.|++||..+....      .
T Consensus        86 ~~~g~~~~~~~~~~~~l~V~~~~~~----p~~~~~~~~~g~~~~l~C~~~~g~P~p--~i~W~k~g~~l~~~~------~  153 (201)
T 1dr9_A           86 KYEKDAFKREHLAEVTLSVKADFPT----PSISDFEIPTSNIRRIICSTSGGFPEP--HLSWLENGEELNAIN------T  153 (201)
T ss_dssp             ECCTTSCEEEEEEEEEEEEECCCCC----CEEEEEECSSTTEEEEEEEEEEESSCE--EEEEEESSCEECCSE------E
T ss_pred             cCCCCccccccccEEEEEEcCCCCC----CceEeccCCCCCeEEEEEecCCccCCC--EEEEEECCEECcccc------c
Confidence            9877653     3566777654221    111  1124688999999995 88887  569999999887532      2


Q ss_pred             eeEe-cC-CeE---EEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        136 NINI-DG-GLL---EITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       136 ~~~~-~~-~~l---~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      +... .. +.+   .+..+...|.|.|+|.|.|..|..+..+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          154 TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            2222 12 222   234556789999999999999988776654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.84  E-value=1.7e-20  Score=174.29  Aligned_cols=170  Identities=19%  Similarity=0.312  Sum_probs=122.2

Q ss_pred             CCCCceEEEEeeeC---CCCCCeeEEEeCCEEccC------------------CCcEEEcc-----CCcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPE---AAPKPKFVWKKDGNIIGS------------------GGRRKIFE-----NGNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~---g~p~p~i~W~~~~~~i~~------------------~~~~~~~~-----~g~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.+.   +.|.+.|.|+|++.....                  .+|..+..     +++|.|.+++.+|+
T Consensus        17 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~   96 (268)
T 3mj6_A           17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADE   96 (268)
T ss_dssp             EETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGC
T ss_pred             EecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHC
Confidence            56899999999998   778889999996543211                  25555532     36799999999999


Q ss_pred             EEEEEEEEcCCCCceee--EEEEEEeCCceeeeCCCceEEecCCcEEEEEEe---cccCCcceeEEEeeC-CEEeccccC
Q psy12061         56 GIYSCTATNVHGMDESK--GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA---HTEELLDVAYIWTHN-GVRIGNMDL  129 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~--~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~~~p~p~~~i~W~~~-~~~~~~~~~  129 (626)
                      |.|+|.|.|..+.....  ..|.|.  |    ..|....+.+|++++|.|.+   .+.|.|  .+.|+++ +........
T Consensus        97 G~Y~C~~~~~~~~~~~~~~~~l~V~--~----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~--~v~W~~~~~~~~~~~~~  168 (268)
T 3mj6_A           97 GIYTCEIRLKNESMVMKKPVELWVL--P----EEPRDLRVRVGDTTQMRCSIQSTEEKRVT--KVNWMFSSGSHTEEETV  168 (268)
T ss_dssp             EEEEEEEEETTCCCEEEEEEEEEEE--C----CCCSEEEEETTCCEEECCBCEESSSSCCC--EEEEEEECTTCSSCEEE
T ss_pred             EEEEEEEEecCCcceEEEEEEEEEe--c----cCCCccccccCCcEEEEEEecCCCCCCcc--ceEEEecCCCCCcceeE
Confidence            99999999976665443  445443  2    34668899999999999999   455554  6699984 321110000


Q ss_pred             --------------CccCCCeeE------ecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        130 --------------NELETPNIN------IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       130 --------------~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                                    ...-..++.      ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          169 LSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             EEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence                          000001111      24678999999999999999999999999999999998543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.83  E-value=3.4e-20  Score=165.72  Aligned_cols=169  Identities=21%  Similarity=0.251  Sum_probs=129.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEcc---CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..|..+  .++.+..   +++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        30 ~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  109 (215)
T 3mtr_A           30 TWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV  109 (215)
T ss_dssp             ECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEE
Confidence            578999999999999999999999999999765  5666654   34799999999999999999999999998888998


Q ss_pred             EEeCCceeeeCCCceE-EecCCcEEEEEEec----ccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEe
Q psy12061         77 VLHGPSYYEQLPPKIT-IAAHRNLQLRCSAH----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEIT  147 (626)
Q Consensus        77 v~~~p~~~~~~~~~~~-v~~g~~~~l~C~~~----~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~  147 (626)
                      |..+|...    .... ...+..+.|.|...    +.|.+...+.|.+++...-..       .....    ....|.|.
T Consensus       110 v~~~P~~p----~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-------~~~~~~~~~~~~~l~i~  178 (215)
T 3mtr_A          110 QADTPSSP----SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-------KWYDAKEASMEGIVTIV  178 (215)
T ss_dssp             ECCCCCCC----EEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-------EEEEHHHHHHHTEEEEE
T ss_pred             ECCCCCCC----cceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-------cccccccccccccEEEC
Confidence            87766432    2222 24578899999743    233333457899887542211       11111    22789999


Q ss_pred             ecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      ++...+.|.|+|.|.|..|....+..+.+..+|.
T Consensus       179 ~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          179 GLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             CCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             CCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            9999999999999999999887777777776653

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.83  E-value=1.7e-20  Score=172.66  Aligned_cols=165  Identities=19%  Similarity=0.254  Sum_probs=117.7

Q ss_pred             CCCCceEEEEeeeCCCC-----CCeeEEEeC--CEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-----KPKFVWKKD--GNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-----~p~i~W~~~--~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++++|.|.+.|.|     .+.|.|+|+  |..+            ...+|+.+..++   +|.|.+++.+|+|.|+
T Consensus        50 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  129 (254)
T 2c1o_A           50 VTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYY  129 (254)
T ss_dssp             ECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEE
Confidence            56899999999999998     489999984  3222            123677665444   7999999999999999


Q ss_pred             EEEEcCCCCce-eeEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC-----C
Q psy12061         60 CTATNVHGMDE-SKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-----N  130 (626)
Q Consensus        60 C~a~n~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-----~  130 (626)
                      |.|.|..+... ..+.|.|..   +|.+...++... ...|++++|.|.+.+.+++.+.+.|+|||..+.....     .
T Consensus       130 C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  208 (254)
T 2c1o_A          130 CVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  208 (254)
T ss_dssp             EEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCC
T ss_pred             EEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccc
Confidence            99999866533 234677754   454444333322 3468899999999986555567899999998865410     0


Q ss_pred             ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       131 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ......+. ..+.|.|.++..+|+|.|+|.|.|.....
T Consensus       209 ~~~~g~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          209 DSKDSTYS-MSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             CTTTCCEE-EEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCCCcEE-EEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            00011111 23579999999999999999999987653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.83  E-value=5e-20  Score=169.01  Aligned_cols=176  Identities=15%  Similarity=0.217  Sum_probs=124.4

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEEc-----------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNII-----------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~i-----------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.|.|  .+.|.|+|+  +..+                 ...+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   91 (256)
T 1nqb_A           12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDS   91 (256)
T ss_dssp             ECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhC
Confidence            57899999999999886  679999994  3222                 01367777643     3799999999999


Q ss_pred             EEEEEEEEcCCCC-----ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcc---eeEEEee--CCEEec
Q psy12061         56 GIYSCTATNVHGM-----DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD---VAYIWTH--NGVRIG  125 (626)
Q Consensus        56 G~Y~C~a~n~~g~-----~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~---~~i~W~~--~~~~~~  125 (626)
                      |.|.|.|.|..|.     ....+.|.|..+|.+. ..|..+.+.+|++++|.|.+.+.|.+.   ..+.|+|  +|..+.
T Consensus        92 G~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~  170 (256)
T 1nqb_A           92 AVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT-QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPK  170 (256)
T ss_dssp             EEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE-EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEE
T ss_pred             EEEEEEEeeccCccceeEEcCceeeeecccccEE-ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcE
Confidence            9999999998763     1234678776665443 457788999999999999999988652   3669999  665442


Q ss_pred             cc-----cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCc-eEEEEEEEEeC
Q psy12061        126 NM-----DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVEG  178 (626)
Q Consensus       126 ~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~  178 (626)
                      ..     ........++..    ....|.|.+++.+|+|.|+|.|.|..+. ......|.|..
T Consensus       171 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          171 LLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            10     000000123322    2347999999999999999999986443 24455666653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.83  E-value=3.1e-21  Score=186.18  Aligned_cols=174  Identities=20%  Similarity=0.259  Sum_probs=133.3

Q ss_pred             CCCCceEEEEee-----eCCCCCCeeEEEeCCEEccCC-CcEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCC----ce
Q psy12061          2 AGEGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSG-GRRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGM----DE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~-----~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~----~~   70 (626)
                      +.+|+.++|.|.     +.|.|.|.|.|+|+|..+..+ .++.+..+ +.|.|.+++.+|+|.|+|.|.|..|.    ..
T Consensus       132 ~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  211 (339)
T 3o4o_C          132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT  211 (339)
T ss_dssp             EETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEE
T ss_pred             EECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEE
Confidence            468999999999     788999999999999999755 56666554 47999999999999999999998874    45


Q ss_pred             eeEEEEEEeC----CceeeeCCCceEEecCCcEEEEEEe---cccCCcceeEEEeeCCEEeccccC--CccCCCeeEe-c
Q psy12061         71 SKGRLIVLHG----PSYYEQLPPKITIAAHRNLQLRCSA---HTEELLDVAYIWTHNGVRIGNMDL--NELETPNINI-D  140 (626)
Q Consensus        71 ~~~~l~v~~~----p~~~~~~~~~~~v~~g~~~~l~C~~---~~~p~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~-~  140 (626)
                      ..+.|.|...    |+.+..++....+..|++++|.|.+   .+.|.+ ..+.|+++|..+.....  ......+... .
T Consensus       212 ~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~  290 (339)
T 3o4o_C          212 RSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLT-TMLWWTANDTHIESAYPGGRVTEGPRQEYSE  290 (339)
T ss_dssp             EEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSS-CEEEEESSSSCSSSSSCSSSCEECCCEECCC
T ss_pred             EEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCC-ceEEEEECCeecccccccccceecceEEecc
Confidence            5678888752    2334445777889999999999999   888832 35699999988753210  0000112221 2


Q ss_pred             CC------eEEEeecCCCCC-EeEEEEEEeCCCceEEEEEEEE
Q psy12061        141 GG------LLEITNASFADA-GEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       141 ~~------~l~i~~~~~~d~-g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      .+      .|.|.+++.+|+ |.|+|.|.|..|..+..+.+.+
T Consensus       291 ~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          291 NNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             SSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             cCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence            23      799999999997 9999999999999887766543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.83  E-value=8e-20  Score=157.57  Aligned_cols=160  Identities=11%  Similarity=0.142  Sum_probs=116.9

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEeCCEEccCCCcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      |.+|++++|+|.+ |.|.|  .|.|.+.+..+   ++.... .++.|.|.+++.+|+|.|.|.|.|..+.....+.|.|+
T Consensus        19 v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~   94 (210)
T 1gsm_A           19 VALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   94 (210)
T ss_dssp             EETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEE
Confidence            5689999999999 88888  99999966544   333333 23469999999999999999999998887788999999


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEeccc-CCc--ceeEEEeeCCEEeccccCCc--c---------CCCeeEecCCeE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELL--DVAYIWTHNGVRIGNMDLNE--L---------ETPNINIDGGLL  144 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p--~~~i~W~~~~~~~~~~~~~~--~---------~~~~~~~~~~~l  144 (626)
                      .+|..+...+.  ....|+.+ |.|.+.+. |.+  .++|.|+|||.++.......  .         .....-.-.+.|
T Consensus        95 ~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~  171 (210)
T 1gsm_A           95 AFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERW  171 (210)
T ss_dssp             BCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEE
T ss_pred             ecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEE
Confidence            98877664443  66788888 99999986 654  57889999999996542100  0         000000112234


Q ss_pred             EEeecCCCCCEeEEEEEEeCCCce
Q psy12061        145 EITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .+......|.+.|+|.|.+..-..
T Consensus       172 ~~~~~~~D~~~~~tC~a~~~L~~~  195 (210)
T 1gsm_A          172 RLPPLGTPVPPALYCQATMRLPGL  195 (210)
T ss_dssp             ECCCCCSSCCSEEEEEEEEEETTE
T ss_pred             eecCCcccCCceEEEEEEeeCCCC
Confidence            444555566689999999876543

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.83  E-value=5.7e-19  Score=153.57  Aligned_cols=178  Identities=15%  Similarity=0.183  Sum_probs=131.1

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      ++.+|.++.+...+.+++.|+|+++     .+.+.+|.|+|+..+ ..+.....    ......+.+.+|.|++.|.|+|
T Consensus         6 ~p~~P~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~-~~~~~~~~----~~~~~~~~i~~L~p~t~Y~~~V   75 (186)
T 1qr4_A            6 DLDNPKDLEVSDPTETTLSLRWRRP-----VAKFDRYRLTYVSPS-GKKNEMEI----PVDSTSFILRGLDAGTEYTISL   75 (186)
T ss_dssp             --CCCEEEEEESCCSSEEEEEEECC-----SSCCSEEEEEEECTT-CCEEEEEE----CTTCSEEEEESCCSSCEEEEEE
T ss_pred             CCcCCCceEEEecCCCEEEEEEeCC-----CCCccEEEEEEEeCC-CCeeEEEC----CCCCCEEEECCCCCCCEEEEEE
Confidence            3468899999999999999999983     246889999998543 33332222    1123467789999999999999


Q ss_pred             EEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEE
Q psy12061        367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL  446 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~  446 (626)
                      +|.|..|.+.+ ....+.+.   |. +|.++++...+.+++.|+|++|.       +.+.+|.|+|+..+.....  ...
T Consensus        76 ~a~~~~~~s~~-~~~~~~t~---p~-~P~~l~~~~~~~~sv~l~W~~p~-------~~i~~Y~v~~~~~~~~~~~--~~~  141 (186)
T 1qr4_A           76 VAEKGRHKSKP-TTIKGSTV---VG-SPKGISFSDITENSATVSWTPPR-------SRVDSYRVSYVPITGGTPN--VVT  141 (186)
T ss_dssp             EEESSSCBCCC-EEEEEECC---CC-CCSCEEEESCCSSCEEEEECCCS-------SCCSEEEEEEEETTCCCCE--EEE
T ss_pred             EEEcCCccCCC-EEEEEECC---CC-CCCccEEEEeCCCEEEEEEECCC-------CcccEEEEEEEeCCCCCce--EEE
Confidence            99997666543 23344443   33 78899999889999999999875       4588999999877653322  223


Q ss_pred             ecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061        447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       447 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      ......++.+.+|+|++.|.|+|+|.+..|.|++. ...+.|.
T Consensus       142 ~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~-~~~~~T~  183 (186)
T 1qr4_A          142 VDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI-SGILKTA  183 (186)
T ss_dssp             EETTCCEEEECSCCSSCEEEEEEEEEETTEECCCE-EEEEEC-
T ss_pred             cCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCE-EEEEEec
Confidence            34455779999999999999999999998887654 3455554

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.83  E-value=3.2e-20  Score=165.79  Aligned_cols=165  Identities=18%  Similarity=0.226  Sum_probs=117.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC---EE--c---------cCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG---NI--I---------GSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~---~~--i---------~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.+.|.+.|.|+|.+   .+  +         ....|+.+...   .+|.|.+++.+|+|.|+|.|.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   92 (213)
T 3r06_A           13 ASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYY   92 (213)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEeccc
Confidence            578999999999999999999999832   11  1         12456665533   2799999999999999999998


Q ss_pred             CCCC-ceeeEEEEE---EeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc-----CCccCCC
Q psy12061         65 VHGM-DESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-----LNELETP  135 (626)
Q Consensus        65 ~~g~-~~~~~~l~v---~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-----~~~~~~~  135 (626)
                      ..+. ......|.|   ..+|.+... +....+..|+.++|.|.+.+.+++.+.+.|+|||..+....     ......+
T Consensus        93 ~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g  171 (213)
T 3r06_A           93 NYPWTFGPGTKLEIKRADAKPTVSIF-PPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDS  171 (213)
T ss_dssp             SSSCEECCCEEEEECCCCBCCEEEEE-CCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTC
T ss_pred             CCceEEcCCceEEEeccCCCceeeee-CCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCC
Confidence            8654 334467777   345555443 33444457888999999999876567889999999986521     0000011


Q ss_pred             eeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        136 NINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       136 ~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .+ .....|.|......|.|.|+|.|.|.....
T Consensus       172 ~~-~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          172 TY-SLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             CE-EEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             cE-EEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            11 122368888888889999999999986543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.83  E-value=2.8e-20  Score=166.48  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=113.6

Q ss_pred             CCCCceEEEEeee-CCCC-CCeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNP-EAAP-KPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p-~p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++++|.|.+ .+.+ .+.|.|+|++  ..+            ...+|+.+..++   +|.|.+++.+|+|.|+|.|
T Consensus        12 v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   91 (216)
T 2xzc_L           12 AAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGT   91 (216)
T ss_dssp             ECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEEEE
Confidence            5789999999996 4443 5799999943  221            113566665433   7999999999999999999


Q ss_pred             EcCCC--CceeeEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cC----Ccc
Q psy12061         63 TNVHG--MDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DL----NEL  132 (626)
Q Consensus        63 ~n~~g--~~~~~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~----~~~  132 (626)
                      .|..+  .....+.|.|..   +|.+...++... ...|++++|.|.+.+.+++.+++.|+|||..+... ..    ...
T Consensus        92 ~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~  170 (216)
T 2xzc_L           92 WDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDS  170 (216)
T ss_dssp             ECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCT
T ss_pred             EeCCCcceECCCEEEEEcCCCCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccC
Confidence            99876  223345777753   444444333332 23689999999999855443578999999988653 10    000


Q ss_pred             CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        133 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       133 ~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ....+ ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus       171 ~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          171 KDSTY-SLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             TTCCE-EEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCCCE-EEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            00111 112379999999999999999999987553

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.83  E-value=1.4e-18  Score=175.43  Aligned_cols=163  Identities=13%  Similarity=0.234  Sum_probs=112.3

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEE---c--------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I--------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~---i--------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.+.+.+  .+.+.|+|+  |..   +              ...+|+.+..+     .+|.|.+++.+|+
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   92 (475)
T 1iga_A           13 KKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDT   92 (475)
T ss_pred             EeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhC
Confidence            57899999999998875  579999995  221   1              01356666543     3699999999999


Q ss_pred             EEEEEEEEcCCCC------ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEe
Q psy12061         56 GIYSCTATNVHGM------DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRI  124 (626)
Q Consensus        56 G~Y~C~a~n~~g~------~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~  124 (626)
                      |.|.|.|.|..|.      ....+.|.|..    +|.+...++.  .+.+|+.++|.|.+.+.+++ .+.|.|++++...
T Consensus        93 G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~  170 (475)
T 1iga_A           93 AVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSVTWSESGQGV  170 (475)
T ss_pred             EEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEEEEcCCCccc
Confidence            9999999998762      23456788864    3444433222  23789999999999997433 3577999988543


Q ss_pred             ccccCCc---cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        125 GNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       125 ~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .......   ...+.+. ..+.|.|..+...|.|.|+|.|.|..+.
T Consensus       171 ~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  215 (475)
T 1iga_A          171 TARNFPPSQDASGDLYT-TSSQLTLPATQCLAGKSVTCHVKHYTNP  215 (475)
T ss_pred             ceEeCCceecCCCCcEE-EEEEEEechhHcCCCceEEEEEEECCCC
Confidence            2111000   0011111 1246888899889999999999998874

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.83  E-value=1.9e-20  Score=171.39  Aligned_cols=167  Identities=18%  Similarity=0.244  Sum_probs=122.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe----------------CCEEccCC---CcEEEccC----CcEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK----------------DGNIIGSG---GRRKIFEN----GNLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~----------------~~~~i~~~---~~~~~~~~----g~L~i~~v~~~d~G~Y   58 (626)
                      |.+|++|+|.|.+.+.|.+.|.|+|                ++..+...   +|+.+..+    .+|.|.+++.+|+|.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y   92 (246)
T 4dzb_B           13 SKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFY   92 (246)
T ss_dssp             EETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEE
Confidence            5689999999999999999999999                44444332   57776542    2699999999999999


Q ss_pred             EEEEEcCCC----CceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc
Q psy12061         59 SCTATNVHG----MDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD  128 (626)
Q Consensus        59 ~C~a~n~~g----~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~  128 (626)
                      .|.|.|..+    .....+.|.|..      +|.+....|....+..|+.++|.|.+.+.|++.+.+.|+|||..+....
T Consensus        93 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  172 (246)
T 4dzb_B           93 ICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV  172 (246)
T ss_dssp             EEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             EEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCc
Confidence            999998654    223456788874      4555555566666778999999999999876666889999999987532


Q ss_pred             CCcc---------CCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCCceE
Q psy12061        129 LNEL---------ETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKIS  169 (626)
Q Consensus       129 ~~~~---------~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~~~  169 (626)
                      ....         ....+. ..+.|.|......| .|.|+|.|.|......
T Consensus       173 ~~~~~~~~~~~~~~~g~~~-~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          173 CTDPQPLKEQPALNDSRYA-LSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EECSSCEESSTTSTTCCEE-EEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ccccccccccccCCCCCEE-EEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            1000         011111 12348888888888 9999999999766543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.83  E-value=1.5e-20  Score=168.63  Aligned_cols=169  Identities=17%  Similarity=0.242  Sum_probs=116.2

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEEcc-----------------CCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-----------------SGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~i~-----------------~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.+.|.|  .+.|.|+|+  |..+.                 ..+|+.+..+     ++|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   91 (219)
T 1c1e_H           12 KKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDM   91 (219)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccC
Confidence            57899999999999875  689999996  33221                 1357776542     4799999999999


Q ss_pred             EEEEEEEEcCCCC----ceeeEEEEEEeC----CceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEecc
Q psy12061         56 GIYSCTATNVHGM----DESKGRLIVLHG----PSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        56 G~Y~C~a~n~~g~----~~~~~~l~v~~~----p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~  126 (626)
                      |.|+|.|.|..+.    ....+.|.|...    |.+...++ ...+..|++++|.|.+.+ .|.| +.|.|+++|..+..
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~  169 (219)
T 1c1e_H           92 ATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGV  169 (219)
T ss_dssp             EEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTE
T ss_pred             EEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCC-eEEEEEeCCcccce
Confidence            9999999998742    224567877653    44443333 234578999999999998 7766 36699999987532


Q ss_pred             ccCCcc-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        127 MDLNEL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       127 ~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      ...... ....+ ...+.|.|... ..|.|.|+|.|.|..|.......|
T Consensus       170 ~~~~~~~~~~~~-~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          170 HTFPAVLQSDLY-TLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             EECCCEESSSCE-EEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEEC
T ss_pred             EecCCcccCCeE-EEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEec
Confidence            111000 00111 12246888444 446699999999998876555444

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.83  E-value=6e-20  Score=161.99  Aligned_cols=152  Identities=18%  Similarity=0.238  Sum_probs=108.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEE--E--ccCCcEEEccCCCCCCEEEEEEEEcCCC-----Cceee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--I--FENGNLLISPVSRDDSGIYSCTATNVHG-----MDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~--~--~~~g~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~   72 (626)
                      |.+|++++|.|.+.+ |.+.+.|+|+|..+....+..  .  ..++.|.|.+++.+|+|.|+|.|.|...     .....
T Consensus        19 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~   97 (201)
T 1nkr_A           19 VKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDP   97 (201)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCC
T ss_pred             cCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCC
Confidence            468999999999975 778999999998664221111  1  1245799999999999999999987532     23445


Q ss_pred             EEEEEEeC---CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEe
Q psy12061         73 GRLIVLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEIT  147 (626)
Q Consensus        73 ~~l~v~~~---p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~  147 (626)
                      +.|.|...   |.+... |. ..+.+|++++|.|.+.+.+   ..+.|+|+|..+.....    ..+..  .....|.|.
T Consensus        98 ~~l~V~~~~~~p~i~~~-p~-~~v~~G~~v~L~C~~~~~~---~~~~w~k~g~~~~~~~~----~~~~~~~~~~~~L~i~  168 (201)
T 1nkr_A           98 LDIVIIGLYEKPSLSAQ-PG-PTVLAGENVTLSCSSRSSY---DMYHLSREGEAHERRLP----AGPKVNGTFQADFPLG  168 (201)
T ss_dssp             EEEEEECSSCCCEEEEE-SC-SEECTTCEEEEEEEESSCC---SEEEEEETTCSSCEEEE----CEEEETTEEEEEEEEE
T ss_pred             EEEEeeccCCCCceecC-CC-CccCCCCeEEEEEeCCCCC---ceEEEEECCcccCcccc----cccccCCceEEEEEeC
Confidence            68888753   344333 33 4789999999999988643   36789999987653210    00111  125689999


Q ss_pred             ecCCCCCEeEEEEEEeCC
Q psy12061        148 NASFADAGEYECVVKSTV  165 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~  165 (626)
                      +++  |+|.|+|.|.+..
T Consensus       169 ~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          169 PAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             ECC--SCEEEEEEEEETT
T ss_pred             CcC--CCeeEEEEEEcCC
Confidence            998  9999999998763

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.83  E-value=2.1e-20  Score=173.13  Aligned_cols=151  Identities=26%  Similarity=0.354  Sum_probs=121.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC-CCce---eeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMDE---SKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~-g~~~---~~~~l~v   77 (626)
                      +.+|++++|.|.+.  |.|.|.|  ||.++...+.     .+.|.|..+..+|.|.|+|.|.|.. |...   ..+.|.|
T Consensus       110 v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~-----~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V  180 (265)
T 2oz4_A          110 VSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP-----RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV  180 (265)
T ss_dssp             EETTCEEEEEEECC--TTSEEEE--SSCSSSCCSS-----EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEE
T ss_pred             ecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCC-----cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEE
Confidence            46899999999998  8999999  8888743321     2458899999999999999998654 7655   5678999


Q ss_pred             EeCCceeee-CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         78 LHGPSYYEQ-LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        78 ~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      ..+|.+... .|.+..+.+|++++|.|.+.|.|.|.  +.|+|+|..+..              .+.+  ..++.+|+|.
T Consensus       181 ~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~--i~W~~~~~~~~~--------------~g~~--~~v~~~d~G~  242 (265)
T 2oz4_A          181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE--LKCLKDGTFPLP--------------IGES--VTVTRDLEGT  242 (265)
T ss_dssp             EEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCE--EEEEETTTEECC--------------TTSC--EECCGGGCEE
T ss_pred             EeCCccccccCCCccEEcCCCeEEEEeECccCCCCe--EEEEECCcccCC--------------CCcE--EEeehhhCeE
Confidence            888877543 35678999999999999999999874  589999873322              1222  2478899999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      |+|.|.|..|..+..+.|.|..+
T Consensus       243 Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          243 YLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEECCCCcEEEEEEEEEecC
Confidence            99999999999999999998753

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.83  E-value=2e-20  Score=167.91  Aligned_cols=169  Identities=16%  Similarity=0.211  Sum_probs=116.0

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCC---EE------------cc---CCCcEEEcc---CCcEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDG---NI------------IG---SGGRRKIFE---NGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~---~~------------i~---~~~~~~~~~---~g~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++++|.|.+.+. |.+.|.|+|..   .+            ..   ..+|+.+..   +.+|.|.+++.+|+|.|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   91 (218)
T 3s96_B           12 FSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYI   91 (218)
T ss_dssp             EETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCEEEE
Confidence            5689999999999999 89999999921   10            00   124666543   236999999999999999


Q ss_pred             EEEEcCCC-----CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCC
Q psy12061         60 CTATNVHG-----MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN  130 (626)
Q Consensus        60 C~a~n~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~  130 (626)
                      |.|.|..|     .....+.|.|..    +|.+...+ ....+..|+.++|.|.+.+.+++.+.+.|+|||..+......
T Consensus        92 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~-~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  170 (218)
T 3s96_B           92 CGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP-PSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDT  170 (218)
T ss_dssp             EEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC-CCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC------
T ss_pred             EEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC-CCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceec
Confidence            99999887     334457888874    44444333 333445779999999999843333578999999998652100


Q ss_pred             ---ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061        131 ---ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       131 ---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                         ......+. ..+.|.|......|.|.|+|.|.|..+..+..+
T Consensus       171 ~~~~~~~~~~~-~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          171 SNPTKEGNKFM-ASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             --------CEE-EEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             CcccccCCcEE-EEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence               00011111 124588888888899999999999987665443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.83  E-value=7e-20  Score=168.20  Aligned_cols=182  Identities=16%  Similarity=0.198  Sum_probs=124.4

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEEc-----------------cCCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNII-----------------GSGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~i-----------------~~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.|.+  .+.|.|+|  .+..+                 ...+|+.+..++     +|.|.+++.+|+
T Consensus        13 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds   92 (253)
T 3uzq_A           13 VKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDT   92 (253)
T ss_dssp             ECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccC
Confidence            57899999999999864  67999999  22111                 113567766543     399999999999


Q ss_pred             EEEEEEEEcCCCCc-eeeEEEEEEeC--------------CceeeeCCCceEEecCCcEEEEEEecccCCc--ceeEEEe
Q psy12061         56 GIYSCTATNVHGMD-ESKGRLIVLHG--------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELL--DVAYIWT  118 (626)
Q Consensus        56 G~Y~C~a~n~~g~~-~~~~~l~v~~~--------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p--~~~i~W~  118 (626)
                      |.|.|.|.|..+.. ...+.|.|...              +..+...|....+.+|++++|.|.+.+.+.+  ...+.|+
T Consensus        93 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~  172 (253)
T 3uzq_A           93 AVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWY  172 (253)
T ss_dssp             EEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEE
T ss_pred             EEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEE
Confidence            99999999976654 34567777642              3445556778999999999999999998765  1356899


Q ss_pred             eC--CEEec---c-cc-CCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCCCCCC
Q psy12061        119 HN--GVRIG---N-MD-LNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLP  183 (626)
Q Consensus       119 ~~--~~~~~---~-~~-~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p  183 (626)
                      |+  +....   . .. .......++..    ....|.|.+++.+|+|.|+|.|.|..+.. .....|.|...+.+|
T Consensus       173 r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~  249 (253)
T 3uzq_A          173 QQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLEHH  249 (253)
T ss_dssp             EECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC----
T ss_pred             EECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCCCc
Confidence            84  22221   0 00 00000122222    22369999999999999999999876543 556778888766554

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.82  E-value=1.7e-20  Score=168.84  Aligned_cols=178  Identities=16%  Similarity=0.231  Sum_probs=118.4

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EE---c---c-----------CCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NI---I---G-----------SGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---i---~-----------~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.|  .+.|.|+|++  ..   +   .           ..+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~   91 (227)
T 1mju_H           12 VKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDS   91 (227)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccC
Confidence            57899999999999887  6899999853  21   1   1           1357777542     3799999999999


Q ss_pred             EEEEEEEEcCCCC-ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccC
Q psy12061         56 GIYSCTATNVHGM-DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDL  129 (626)
Q Consensus        56 G~Y~C~a~n~~g~-~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~  129 (626)
                      |.|.|.|.|..+. ....+.|.|..    +|.+....|. ..+..|+.++|.|.+.+. |.| +.+.|++++..+.....
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~~  169 (227)
T 1mju_H           92 AVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTF  169 (227)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEEC
T ss_pred             EEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCC-eEEEEecCCCcCCcEEC
Confidence            9999999986432 22346788864    3444443333 346789999999999986 543 57799999876532110


Q ss_pred             Ccc-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        130 NEL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       130 ~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      ... ....+ ...+.|.|..+..+| |.|+|.|.|..+.......+.+..+|..|
T Consensus       170 ~~~~~~g~~-~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~  222 (227)
T 1mju_H          170 PAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  222 (227)
T ss_dssp             CCEEETTEE-EEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred             CceecCCeE-EEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence            000 00111 134578999988878 99999999988877777777777777654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.82  E-value=3.9e-20  Score=169.75  Aligned_cols=164  Identities=16%  Similarity=0.236  Sum_probs=115.8

Q ss_pred             CCCCceEEEEeeeCCCC-----CCeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-----KPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++|+|.|.+.+.|     .+.|.|+|++  ..+            ...+|+.+..++   +|.|.+++.+|+|.|+
T Consensus        46 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  125 (252)
T 3bkj_L           46 VNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYY  125 (252)
T ss_dssp             ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEEEE
Confidence            57899999999999988     6899999954  111            113566665443   7999999999999999


Q ss_pred             EEEEcCCCCce-eeEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-cC----C
Q psy12061         60 CTATNVHGMDE-SKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DL----N  130 (626)
Q Consensus        60 C~a~n~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~~----~  130 (626)
                      |.|.|..+... ....|.|..   +|.+...++.. .+..|++++|.|.+.+.+++.+++.|+|||..+... ..    .
T Consensus       126 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  204 (252)
T 3bkj_L          126 CFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  204 (252)
T ss_dssp             EEECSBSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCC
T ss_pred             EEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcc
Confidence            99998866432 335677754   34444333332 234799999999999965444678999999988643 10    0


Q ss_pred             ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        131 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       131 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ....+.+ ...+.|.|.++..+|+|.|+|.|.|....
T Consensus       205 ~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          205 DSKDSTY-SMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             CTTTCCE-EEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             cCCCCCE-EEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            0000111 11246999999999999999999997654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.82  E-value=1.1e-19  Score=165.37  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=113.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEc---------------cCCCcEEEcc----CCcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNII---------------GSGGRRKIFE----NGNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i---------------~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|. .+.|.|.|.|+|+  +..+               ...+|+.+..    +.+|.|.+++.+|+|.|+|
T Consensus        12 v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   90 (238)
T 2p1y_A           12 AVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFC   90 (238)
T ss_dssp             EETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEE
T ss_pred             EeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEEE
Confidence            568999999999 7889999999995  2111               1135666653    2369999999999999999


Q ss_pred             EEEcCCCCc-----eeeEEEEEEeCCc-----------eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--E
Q psy12061         61 TATNVHGMD-----ESKGRLIVLHGPS-----------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--V  122 (626)
Q Consensus        61 ~a~n~~g~~-----~~~~~l~v~~~p~-----------~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~  122 (626)
                      .|.|..|..     ...+.|.|...+.           .+...|....+.+|++++|.|.+.+.|.|  .+.|+|++  .
T Consensus        91 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i~W~k~~~~~  168 (238)
T 2p1y_A           91 ASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQFPGE  168 (238)
T ss_dssp             EEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC--EEEEEEECTTS
T ss_pred             EEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC--cEEEEEECCCC
Confidence            999987631     1346788876553           44555778899999999999999998876  56899864  1


Q ss_pred             ---Eeccc--cCCccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061        123 ---RIGNM--DLNELETPNINID------GGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus       123 ---~~~~~--~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                         .+...  ........++...      ...|.|.+++.+|+|.|+|.|.|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          169 GPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence               11100  0000011233332      3589999999999999999999974

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.82  E-value=1.4e-19  Score=161.88  Aligned_cols=162  Identities=21%  Similarity=0.274  Sum_probs=113.8

Q ss_pred             CCCCceEEEEeeeCCC-------CCCeeEEEeCCEE------c-----------cCCCcEEEccC-----CcEEEccCCC
Q psy12061          2 AGEGGNVTIFCNPEAA-------PKPKFVWKKDGNI------I-----------GSGGRRKIFEN-----GNLLISPVSR   52 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-------p~p~i~W~~~~~~------i-----------~~~~~~~~~~~-----g~L~i~~v~~   52 (626)
                      +.+|++|+|.|.+.+.       +.+.|.|+|++..      +           ...+|+.+..+     .+|.|.+++.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   91 (214)
T 2zg1_A           12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARM   91 (214)
T ss_dssp             EETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCG
T ss_pred             EecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCH
Confidence            5689999999999754       5779999998752      1           12367776543     3799999999


Q ss_pred             CCCEEEEEEEEcCCCCce----eeEEEEEEeCCc--eeeeCCCceEEecCCcEEEEEEeccc-C-CcceeEEEeeCCEEe
Q psy12061         53 DDSGIYSCTATNVHGMDE----SKGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTE-E-LLDVAYIWTHNGVRI  124 (626)
Q Consensus        53 ~d~G~Y~C~a~n~~g~~~----~~~~l~v~~~p~--~~~~~~~~~~v~~g~~~~l~C~~~~~-p-~p~~~i~W~~~~~~~  124 (626)
                      +|+|.|.|.+.+..+...    ....|.|...|.  .+.. +.  .+.+|++++|.|.+.+. + .|.+.+.|++++..+
T Consensus        92 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~  168 (214)
T 2zg1_A           92 EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSP  168 (214)
T ss_dssp             GGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSS
T ss_pred             hhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCcc
Confidence            999999999998864322    457888877432  2222 22  26799999999999875 1 123467999998654


Q ss_pred             ccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        125 GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      ...        + ....+.|.|..+..+|.|.|+|.|.|..+.......+.
T Consensus       169 ~~~--------~-~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          169 LDP--------E-TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             SCS--------S-CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             CCC--------C-ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            211        1 13567899999999999999999999876544444333

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.82  E-value=4.9e-20  Score=164.04  Aligned_cols=165  Identities=14%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEEcc----------------CCCcEEEccC-----CcEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG----------------SGGRRKIFEN-----GNLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~i~----------------~~~~~~~~~~-----g~L~i~~v~~~d~G   56 (626)
                      +.+|++++|.|.+.|.|  .+.|.|+|+  |..+.                ..+|+.+..+     .+|.|.+++.+|+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G   91 (210)
T 3d9a_H           12 VKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTA   91 (210)
T ss_dssp             ECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             ecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCE
Confidence            57899999999999876  479999985  32210                2467777542     27999999999999


Q ss_pred             EEEEEEEcCCCCceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccccCCc
Q psy12061         57 IYSCTATNVHGMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        57 ~Y~C~a~n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      .|.|.|.|.. .....+.|.|..    +|.+...++. ..+..|++++|.|.+.+. |.| +++.|++++..+.......
T Consensus        92 ~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~~  168 (210)
T 3d9a_H           92 TYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFPA  168 (210)
T ss_dssp             EEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECCC
T ss_pred             EEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCC-cEEEEeeCCcccceEEcCC
Confidence            9999999864 223346777763    3444433332 346789999999999987 654 4679999988643211000


Q ss_pred             c-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061        132 L-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus       132 ~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      . ....+ ...+.|.|.++...| |.|+|.|.|..|.....
T Consensus       169 ~~~~~~~-~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          169 VLQSDLY-TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             EEETTEE-EEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCCcE-EEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            0 00111 123569999998877 99999999999875443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.82  E-value=6.4e-21  Score=182.21  Aligned_cols=162  Identities=15%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             ceEEEEeeeCCC-C-CCeeEEEeCCEEccCCCcE--EEccCC------cEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          6 GNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGGRR--KIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         6 ~~~~l~C~~~g~-p-~p~i~W~~~~~~i~~~~~~--~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      ++++|.|.+.|. | .+.|.|+|||.+|..+.+.  .+..+|      .|.|..+..+|+|.|+|.|.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999986 4 4699999999998644221  122233      47788888889999999999987654333221


Q ss_pred             EE---EeCCceeeeCCCceEEecCCcEEEEEEecccC-Cc-ceeEEEeeCC-EEeccccCCc--cCCCeeEecCCeEEEe
Q psy12061         76 IV---LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LL-DVAYIWTHNG-VRIGNMDLNE--LETPNINIDGGLLEIT  147 (626)
Q Consensus        76 ~v---~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p-~~~i~W~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~i~  147 (626)
                      .+   ...|.+...+|....+.+|++++|.|.+.+.+ .| .+.|.|+|++ ..+.......  ....++. ..+.|.|.
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~-~~~~L~I~  183 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-VTSTLPVG  183 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE-EEEEEECC
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE-EEEEEEEC
Confidence            11   12344445566666788999999999999864 33 1477999974 4443211000  0011111 34479999


Q ss_pred             ecCCCCCEeEEEEEEeCCCce
Q psy12061        148 NASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      +++.+|+|.|+|.|.|..+..
T Consensus       184 ~~~~~D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          184 TRDWIEGETYQCRVTHPHLPR  204 (323)
T ss_dssp             HHHHHTTCCEEEEEECTTSSS
T ss_pred             HHHccCCCCEEEEEECCCCCC
Confidence            999999999999999987543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.82  E-value=2.2e-19  Score=154.30  Aligned_cols=150  Identities=21%  Similarity=0.203  Sum_probs=110.6

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEeC-CEEc------------cCC--CcEEE-ccCCcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKKD-GNII------------GSG--GRRKI-FENGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~~-~~~i------------~~~--~~~~~-~~~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|.+.+ .+.+.|.|+|+ +..|            ...  +|+.+ ..+++|.|.+++.+|+|.|+|.+.+
T Consensus        11 v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~   90 (180)
T 2dru_A           11 AITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLH   90 (180)
T ss_dssp             EETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEEES
T ss_pred             EEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEEEc
Confidence            678999999999865 34689999994 3322            122  67777 6778999999999999999999988


Q ss_pred             CCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeE
Q psy12061         65 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL  144 (626)
Q Consensus        65 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l  144 (626)
                      .. .....+.|.|..++..     +.+. ..+++++|.|.+...|.|  .|.|++++..+..            ..+..|
T Consensus        91 ~~-~~~~~~~L~V~~~~~~-----P~i~-~~~~~v~L~C~~~~gp~p--~i~W~~~~~~l~~------------~~~~~l  149 (180)
T 2dru_A           91 ET-EDQWKITMEVYEMVSK-----PMIY-WECSNATLTCEVLEGTDV--ELKLYQGKEHLRS------------LRQKTM  149 (180)
T ss_dssp             SS-EEEEEEEEEEECCCCC-----CEEE-EEGGGTEEEEECSSCTTC--EEEEEETTEEEEE------------ESSSEE
T ss_pred             CC-eEEEEEEEEEECCCCC-----CEEE-ecCCCEEEEEEeCCCCCC--EEEEEECCeECcC------------CCCCEE
Confidence            76 5556678888664321     1222 356789999999443655  5699999998751            134456


Q ss_pred             EEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        145 EITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      .+..  ..|+|.|+|.|.|..|..++...+
T Consensus       150 ~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          150 SYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEEE--hhcCccEEEEEecCcCccccceeE
Confidence            6633  789999999999999987665543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.82  E-value=1.7e-20  Score=188.00  Aligned_cols=169  Identities=15%  Similarity=0.242  Sum_probs=119.2

Q ss_pred             CCCCceEEEEeeeCCC-CCC-eeEEEeCCEEccC--C------CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS--G------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~--~------~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +.+|+.++|.|.+.|. |.| .|.|+|++..+..  .      +.+.+  .+.|.|.++..+| |.|+|.|.|..|....
T Consensus       135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~  211 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVTSSTWPS-QSITCNVAHPASSTKV  211 (444)
T ss_dssp             CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE--EEEEEECSTTTTT-SCCEEEEEETTTTEEE
T ss_pred             CCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEE--EEEEEEchhhcCC-CeEEEEEEeCCCCcce
Confidence            3589999999999986 777 9999999886421  1      11111  2469999999999 9999999999987654


Q ss_pred             eEEEEE------------------EeCCceeeeCCCceE-EecCCcEEEEEEecccC--CcceeEEEeeCCEEeccccCC
Q psy12061         72 KGRLIV------------------LHGPSYYEQLPPKIT-IAAHRNLQLRCSAHTEE--LLDVAYIWTHNGVRIGNMDLN  130 (626)
Q Consensus        72 ~~~l~v------------------~~~p~~~~~~~~~~~-v~~g~~~~l~C~~~~~p--~p~~~i~W~~~~~~~~~~~~~  130 (626)
                      ...+.+                  ..+|.+...+|.... +.+|++++|.|.+.+.+  ++.+.|.|+|+|..+......
T Consensus       212 ~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~  291 (444)
T 1igt_B          212 DKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ  291 (444)
T ss_dssp             EEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCB
T ss_pred             EEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccc
Confidence            444432                  124544344554443 68899999999999985  444678999999887643210


Q ss_pred             c---cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        131 E---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       131 ~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      .   .....+ ...+.|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus       292 ~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v  337 (444)
T 1igt_B          292 THREDYNSTL-RVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTI  337 (444)
T ss_dssp             CCEEECSSSE-EEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEE
T ss_pred             cceeCCCCcE-EEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEE
Confidence            0   000111 123579999999999999999999998876433343

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.82  E-value=7.3e-20  Score=166.64  Aligned_cols=169  Identities=15%  Similarity=0.178  Sum_probs=117.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EE------------ccCCCcEEEcc---CCcEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NI------------IGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~------------i~~~~~~~~~~---~g~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.+.|.+.|.|+|++  ..            ....+|+.+..   +.+|.|.+++.+|+|.|+|.|.|
T Consensus        36 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~  115 (237)
T 3sob_L           36 ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSY  115 (237)
T ss_dssp             EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeecc
Confidence            568999999999999999999999832  11            11245666653   33699999999999999999998


Q ss_pred             CCCCc-eeeEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc----CCccCCCe
Q psy12061         65 VHGMD-ESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD----LNELETPN  136 (626)
Q Consensus        65 ~~g~~-~~~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~----~~~~~~~~  136 (626)
                      ..+.. ...+.|.|..   +|.+...+ ....+..|++++|.|.+.+.+++.+++.|+|||..+....    ........
T Consensus       116 ~~~~~~~~~~~l~V~~~~~~p~v~~~~-~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g  194 (237)
T 3sob_L          116 TTPPTFGQGTKVEIKRTVAAPSVFIFP-PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDS  194 (237)
T ss_dssp             SSSCEECCCEEEEEECCCBCCEEEEEC-CCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTC
T ss_pred             CCceEEcCcEEEEEecCCCCCceEEeC-CChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCC
Confidence            77642 3345777743   44443332 2333446889999999999654245789999999986421    00000111


Q ss_pred             eEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEE
Q psy12061        137 INIDGGLLEITNASFADAGEYECVVKSTVGKISTK  171 (626)
Q Consensus       137 ~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~  171 (626)
                      .......|.|.....+|.|.|+|.|.|........
T Consensus       195 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          195 TYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             CEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             cEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence            11123468899999999999999999987654333

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.82  E-value=5.1e-20  Score=166.26  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=114.4

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEeCCEEcc----------------CCCcEEEc----------cCCcEEEccCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIG----------------SGGRRKIF----------ENGNLLISPVSR   52 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~i~----------------~~~~~~~~----------~~g~L~i~~v~~   52 (626)
                      +..|++|+|.|.+.+.|.+   .|.|+|++..+.                ...|....          .+++|.|.+++.
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~   92 (225)
T 4fmk_A           13 GRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRV   92 (225)
T ss_dssp             EETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCG
T ss_pred             EecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCH
Confidence            4679999999999998776   489999765331                11222221          235799999999


Q ss_pred             CCCEEEEEEEEcCCCCceee-EEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc
Q psy12061         53 DDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        53 ~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      +|+|.|+|.|.|..+..... ..+.+..+|..... +.......++.+.+.|.+.+.+++ ..+.|.+++..+.......
T Consensus        93 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~P~-~~~~w~~~~~~~~~~~~~~  170 (225)
T 4fmk_A           93 EDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAE-AQEVTIGPQSVAVARCVSTGGRPP-ARITWISSLGGEAKDTQEP  170 (225)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE-ECCBCCSSSCEEEEEEEEEEEBSC-CEEEEECSSCCEEEEEEEE
T ss_pred             HHCcceEEEEEeCCCcceeeeeeeeeecCCceeec-ccceeecceeeeeeeeeecCCCCC-CEEEEEECCccccCCcceE
Confidence            99999999999987765554 45555555554443 444556677777777776654433 3568998876654331100


Q ss_pred             cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        132 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       132 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      ..........+.|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus       171 ~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~  214 (225)
T 4fmk_A          171 GIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT  214 (225)
T ss_dssp             CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             EecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence            10111111234699999999999999999999988764444333

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.82  E-value=1.4e-19  Score=166.10  Aligned_cols=162  Identities=17%  Similarity=0.282  Sum_probs=112.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC-----EEc---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG-----NII---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++++|.|.+.+.|.|.|.|+|+.     ..+         ...+|+.+..++   +|.|.+++.+|+|.|.|.|.|
T Consensus        16 v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   95 (250)
T 3esu_F           16 ASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGN   95 (250)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             eeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEee
Confidence            578999999999999999999999943     111         123566554333   699999999999999999999


Q ss_pred             CCCCc-eeeEEEEEEeC------------------CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEE
Q psy12061         65 VHGMD-ESKGRLIVLHG------------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVR  123 (626)
Q Consensus        65 ~~g~~-~~~~~l~v~~~------------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~  123 (626)
                      ..+.. ...+.|.|..+                  +......|....+.+|++++|.|.+.+.+.+...+.|+|+  +..
T Consensus        96 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~  175 (250)
T 3esu_F           96 TLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQG  175 (250)
T ss_dssp             SSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSC
T ss_pred             CCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCC
Confidence            76653 33456777553                  1222234567889999999999999987744557799997  443


Q ss_pred             ecccc-C---------CccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEe
Q psy12061        124 IGNMD-L---------NELETPNINID------GGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus       124 ~~~~~-~---------~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      +.... +         ......|+.+.      ...|.|.+++.+|+|.|+|.+.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          176 PEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            32110 0         00001333332      12699999999999999999997

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=8.3e-20  Score=166.46  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=117.1

Q ss_pred             CCCCceEEEEeeeCCCC----CCeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP----KPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p----~p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|.+.+.|    .+.|.|+|++  ..+            ....|+.+..++   +|.|.+++.+|+|.|+|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   92 (240)
T 1moe_A           13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYC   92 (240)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             ecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEEEE
Confidence            57899999999999998    7899999952  211            023566665433   69999999999999999


Q ss_pred             EEEcCCCC-ceeeEEEEEEeCC-----ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEecc------
Q psy12061         61 TATNVHGM-DESKGRLIVLHGP-----SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN------  126 (626)
Q Consensus        61 ~a~n~~g~-~~~~~~l~v~~~p-----~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~------  126 (626)
                      .|.|..+. ....+.|.|..++     ......|....+.+|++++|.|.+.+.|.+...+.|+|+  +..+..      
T Consensus        93 ~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~  172 (240)
T 1moe_A           93 QQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDP  172 (240)
T ss_dssp             EECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEET
T ss_pred             EEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcc
Confidence            99998765 4456788887643     333344677889999999999999998865557799996  322210      


Q ss_pred             -cc---CCccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEe
Q psy12061        127 -MD---LNELETPNINID------GGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus       127 -~~---~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                       ..   .......++...      ...|.|.+++.+|+|.|+|.|.+
T Consensus       173 ~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          173 ANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             TTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence             00   000011233332      24799999999999999999985

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.82  E-value=1e-19  Score=166.76  Aligned_cols=172  Identities=15%  Similarity=0.208  Sum_probs=113.1

Q ss_pred             CCCCceEEEEeeeCCCCCCe-----eEEEeCCEEcc--------CCCcEEEc-------------cCCcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-----FVWKKDGNIIG--------SGGRRKIF-------------ENGNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-----i~W~~~~~~i~--------~~~~~~~~-------------~~g~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.+.|.|.+.     |.|+|++....        .+.+....             .+.+|.|.+++.+|+
T Consensus        15 v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~   94 (248)
T 3pv7_A           15 TPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEA   94 (248)
T ss_dssp             EETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGC
T ss_pred             EeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHC
Confidence            46899999999999988876     99999643211        01111111             123599999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEecccc------
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMD------  128 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~------  128 (626)
                      |.|+|.|.|..+.....+.|.|..+|.+...+.  ..+..|+.++|.|.+.+ .|.| +.+.|+++|..+....      
T Consensus        95 G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~p-i~v~W~k~g~~l~~~~~~~~~~  171 (248)
T 3pv7_A           95 GEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEA-INITWEKQTQKFPHPIEISEDV  171 (248)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSC-CEEEEEEECSSSCSCEEECTTE
T ss_pred             eEEEEEEEeCCccceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCC-eEEEEEECCccCCCccccccce
Confidence            999999999988878888999988887655433  34556888889999999 6765 4679999996443110      


Q ss_pred             ----CCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc--eEEEEEEEEe
Q psy12061        129 ----LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--ISTKTTVIVE  177 (626)
Q Consensus       129 ----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~--~~~~~~l~v~  177 (626)
                          ........+ .....|.|......|.|.|+|.|.|..+.  .+..+.|.|.
T Consensus       172 ~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          172 ITGPTIKNMDGTF-NVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             EEEEEEECTTSCE-EEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             eecccEECCCCCE-EEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence                000001111 12346888888999999999999999886  4556666663

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.81  E-value=3.9e-20  Score=166.26  Aligned_cols=169  Identities=15%  Similarity=0.250  Sum_probs=118.3

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EE---c----------------cCCCcEEEccC-----CcEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NI---I----------------GSGGRRKIFEN-----GNLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---i----------------~~~~~~~~~~~-----g~L~i~~v~~~   53 (626)
                      |.+|++++|.|.+.+.|  .+.|.|+|++  ..   +                ...+|+.+..+     .+|.|.+++.+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   91 (222)
T 1q9r_B           12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAE   91 (222)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcc
Confidence            57899999999999876  6799999842  21   1                01357777643     37999999999


Q ss_pred             CCEEEEEEEEcCCC-----CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEE
Q psy12061         54 DSGIYSCTATNVHG-----MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVR  123 (626)
Q Consensus        54 d~G~Y~C~a~n~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~  123 (626)
                      |+|.|.|.|.|..+     .....+.|.|..    +|.+...++. ..+..|+.++|.|.+.+. |.| +.+.|+++|..
T Consensus        92 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~  169 (222)
T 1q9r_B           92 DSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLS  169 (222)
T ss_dssp             GCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBC
T ss_pred             cCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc-ccccCCCcEEEEEEEccEECCC-CEEEEecCCeE
Confidence            99999999999765     223456787764    3444443332 235689999999999986 665 46799999977


Q ss_pred             eccccCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEE
Q psy12061        124 IGNMDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       124 ~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                      +....... ...+.+ ...+.|.|.++...| |.|+|.|.|..|.......+
T Consensus       170 ~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          170 SGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             TTEEEEEEEEETTEE-EEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cceEeccccccCCcE-EEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            54311000 001111 123478999999899 99999999999976554443

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.81  E-value=3e-19  Score=164.46  Aligned_cols=181  Identities=17%  Similarity=0.228  Sum_probs=120.7

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--E---Ec-------------cCCCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--N---II-------------GSGGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~---~i-------------~~~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      |.+|++|+|.|.+.+.  |.+.|.|+|..  .   .+             ...+|+.+..++     +|.|.+++.+|+|
T Consensus        20 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG   99 (257)
T 3gkz_A           20 VKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTA   99 (257)
T ss_dssp             ECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             EcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCE
Confidence            5789999999999884  57899999832  1   11             123567766433     5999999999999


Q ss_pred             EEEEEEEcCCCC----ceeeEEEEEEeC-------------CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee
Q psy12061         57 IYSCTATNVHGM----DESKGRLIVLHG-------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH  119 (626)
Q Consensus        57 ~Y~C~a~n~~g~----~~~~~~l~v~~~-------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~  119 (626)
                      .|.|.|.|..+.    ....+.|.|..+             +..+...|....+.+|++++|.|.+.+.+.+ ..+.|+|
T Consensus       100 ~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~v~W~k  178 (257)
T 3gkz_A          100 TYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS-SHLYWYQ  178 (257)
T ss_dssp             EEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG-GGEEEEE
T ss_pred             EEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc-eEEEEEE
Confidence            999999997322    234567777654             3445556778999999999999999998765 2568998


Q ss_pred             C--CEEeccc----c-CCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCc-eEEEEEEEEeCCCCCC
Q psy12061        120 N--GVRIGNM----D-LNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVEGPPGLP  183 (626)
Q Consensus       120 ~--~~~~~~~----~-~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~P~~p  183 (626)
                      +  +..+...    . .......++..    ....|.|.+++.+|+|.|+|.|.+.... ......|.|...|..|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~~~  254 (257)
T 3gkz_A          179 QKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAPHHH  254 (257)
T ss_dssp             ECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC----
T ss_pred             ECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCCCCC
Confidence            3  3322100    0 00000122222    2236999999999999999999875543 2445677777655444

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=3.3e-20  Score=168.47  Aligned_cols=170  Identities=18%  Similarity=0.205  Sum_probs=117.4

Q ss_pred             CCCCceEEEEeeeCCCC-CC-eeEEEeCC--EEc------------cCCCcEEEccC---CcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-KP-KFVWKKDG--NII------------GSGGRRKIFEN---GNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p-~i~W~~~~--~~i------------~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++++|.|.+.|.+ .+ .|.|+|++  ..+            ...+|+.+..+   .+|.|.+++.+|+|.|+|.|
T Consensus        31 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  110 (234)
T 2j6e_L           31 GTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAT  110 (234)
T ss_dssp             BCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEEEE
T ss_pred             eeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEEEE
Confidence            67999999999999864 34 79999963  222            11356665432   37999999999999999999


Q ss_pred             EcCCCC---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc---c
Q psy12061         63 TNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---L  132 (626)
Q Consensus        63 ~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~---~  132 (626)
                      .|..+.   ....+.|.|..    +|.+...++.. .+..|++++|.|.+.+.+++.+++.|+|||..+.......   .
T Consensus       111 ~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  189 (234)
T 2j6e_L          111 WDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSK  189 (234)
T ss_dssp             EETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCC
T ss_pred             EcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceE
Confidence            998872   22345666632    44443333332 2346899999999998765546789999999986431000   0


Q ss_pred             CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061        133 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       133 ~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      .........+.|.|.++..+|+|.|+|.|.|..+..+.++
T Consensus       190 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          190 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            0000111234789999999999999999999987755444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.81  E-value=1.7e-19  Score=165.90  Aligned_cols=177  Identities=16%  Similarity=0.249  Sum_probs=122.1

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEE---c--------------cCCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I--------------GSGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~---i--------------~~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.|.|  .+.|.|+|.  +..   +              ...+|+.+..++     +|.|.+++.+|+
T Consensus        14 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds   93 (256)
T 3umt_A           14 VKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDS   93 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccC
Confidence            57899999999999876  679999983  221   1              023566666443     399999999999


Q ss_pred             EEEEEEEEcC----CCCceeeEEEEEEeC---------------CceeeeCCCceEEecCCcEEEEEEecccCCcceeEE
Q psy12061         56 GIYSCTATNV----HGMDESKGRLIVLHG---------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI  116 (626)
Q Consensus        56 G~Y~C~a~n~----~g~~~~~~~l~v~~~---------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~  116 (626)
                      |.|.|.|.|.    .+.....+.|.|...               +..+...|....+.+|++++|.|.+.+.+.+  .+.
T Consensus        94 G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~  171 (256)
T 3umt_A           94 AVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS--NLN  171 (256)
T ss_dssp             EEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT--CEE
T ss_pred             EEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc--EEE
Confidence            9999999987    333445578888652               4445556788999999999999999998876  568


Q ss_pred             EeeC--CEEec---c-c-cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCCC
Q psy12061        117 WTHN--GVRIG---N-M-DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPP  180 (626)
Q Consensus       117 W~~~--~~~~~---~-~-~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P  180 (626)
                      |+|+  +..+.   . . ........|+..    ....|.|.+++.+|+|.|+|.+.|..+.. .....|.|..++
T Consensus       172 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          172 WLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             EEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            9984  22221   0 0 000000123322    22369999999999999999999865433 446677777554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=7.7e-21  Score=169.66  Aligned_cols=165  Identities=21%  Similarity=0.254  Sum_probs=116.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++++|.|.+.+.|.+.|.|+|+  |..+.            ..+|+.+..++   +|.|.+++.+|+|.|+|.|.|
T Consensus        11 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   90 (212)
T 1nfd_E           11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (212)
T ss_dssp             EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             EeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEEEEc
Confidence            56899999999999988889999984  33321            13566665432   799999999999999999997


Q ss_pred             CCCCc---eeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc----cC
Q psy12061         65 VHGMD---ESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE----LE  133 (626)
Q Consensus        65 ~~g~~---~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~----~~  133 (626)
                      ..+..   ...+.|.|..    +|.+... +....+..|++++|.|.+.+.+++.+.+.|+|||..+.......    ..
T Consensus        91 ~~~~~~~~~~~~~l~V~~~~~~~p~v~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~  169 (212)
T 1nfd_E           91 GDNNDLVFGSGTQLTVLRGPKSSPKVTVF-PPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG  169 (212)
T ss_dssp             TTTTEEEECCCEEEEEECCCCBCCEEECC-CCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSS
T ss_pred             ccCcccccCCceEEEEccCCCCCCEEEee-CCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecC
Confidence            43321   2345677743    3433332 33333468999999999999754435779999999987542100    00


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceE
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS  169 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~  169 (626)
                      .. +. ..+.|.|.++..+|+|.|+|.|.|..+..+
T Consensus       170 ~~-~~-~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (212)
T 1nfd_E          170 QN-YM-TSSYLSLTADQWKSHNRVSCQVTHEGETVE  203 (212)
T ss_dssp             SC-EE-EEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             CC-ce-EEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence            11 11 225699999999999999999999987643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.81  E-value=9.4e-19  Score=175.98  Aligned_cols=172  Identities=14%  Similarity=0.241  Sum_probs=119.5

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEE---c--------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I--------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~---i--------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.+.+.|  .+.|.|+|+  |..   +              ...+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   91 (457)
T 1hzh_H           12 KKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADT   91 (457)
T ss_dssp             ECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccC
Confidence            57899999999999886  679999983  321   1              01367777643     2699999999999


Q ss_pred             EEEEEEEEcCCC------------CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee
Q psy12061         56 GIYSCTATNVHG------------MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH  119 (626)
Q Consensus        56 G~Y~C~a~n~~g------------~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~  119 (626)
                      |.|+|.|.|..|            .....+.|.|..    +|.+...++ ...+.+|++++|.|.+.+..+..+.+.|+|
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  170 (457)
T 1hzh_H           92 AVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSWNS  170 (457)
T ss_dssp             EEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC-CSCCCTTCCEEEEEEEESBBSCCCEEEETT
T ss_pred             EEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc-cccccCCCcEEEEEEEeEEeCCCeEEEEEe
Confidence            999999999876            223456788865    454444333 334689999999999998732224679999


Q ss_pred             CCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        120 NGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       120 ~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      ++..+.......  ...+++. ..+.|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~  227 (457)
T 1hzh_H          171 GALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEP  227 (457)
T ss_dssp             TTBCTTEEEEEEEECTTSCEE-EEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCEeccceEcCceECCCCCEE-EEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecc
Confidence            996543111000  0011111 12479999999999 9999999998887655555443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.81  E-value=9.3e-20  Score=174.68  Aligned_cols=160  Identities=13%  Similarity=0.149  Sum_probs=109.9

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEeCCEEccCCCcEEEcc--CC------cEEEccCCCCCCEEEEEEEEcCCCCc--
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFE--NG------NLLISPVSRDDSGIYSCTATNVHGMD--   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~i~~~~~~~~~~--~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~--   69 (626)
                      +.+|++++|.|.+.|.|+|  .|.|+|||.+|....+.....  ++      .|.|.....+|.|.|+|.|.|..+..  
T Consensus       129 ~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~  208 (327)
T 2wng_A          129 ATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDP  208 (327)
T ss_dssp             BCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCC
T ss_pred             cCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCc
Confidence            5789999999999998776  999999999997543322221  12      47788777788999999999988763  


Q ss_pred             -eeeEEE--EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC-----
Q psy12061         70 -ESKGRL--IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG-----  141 (626)
Q Consensus        70 -~~~~~l--~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-----  141 (626)
                       ...+.+  .+..+|.+...+. .  +.+|++++|.|.+.+.+++.++|.|+|||..+.....    .......+     
T Consensus       209 ~~~~~~~~~~v~~~P~i~~~~~-~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~----~~~~~~~~g~~~~  281 (327)
T 2wng_A          209 LRGTANLSETIRVPPTLEVTQQ-P--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA----STVTENKDGTYNW  281 (327)
T ss_dssp             EEEEEEGGGTBCBCCEEEEEEE-C--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEEC----CSCEECTTSCEEE
T ss_pred             ccceEEeccccCCCCEEEEecC-C--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCccc----CceEECCCCcEEE
Confidence             223333  3344565544322 2  7799999999999997666667899999999865310    01111112     


Q ss_pred             -CeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        142 -GLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       142 -~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                       ..|.|.++..+|+|.|+|.|.|..|..
T Consensus       282 ~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          282 MSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEEEEccccccCCCEEEEEEEeCCCCC
Confidence             358888999999999999999999865

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=1.5e-19  Score=164.42  Aligned_cols=170  Identities=18%  Similarity=0.235  Sum_probs=117.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE----EEccCCcEEEccCCCCCCEEEEEEEEcCCC-----Cceee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR----KIFENGNLLISPVSRDDSGIYSCTATNVHG-----MDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~----~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~   72 (626)
                      |.+|++|+|.|.+.+ +.+.+.|+|+|..+....+.    ....+++|.|.+++.+|+|.|+|.|.|..+     .....
T Consensus        18 V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~   96 (257)
T 1b6u_A           18 VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDP   96 (257)
T ss_dssp             EESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCC
T ss_pred             ecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCC
Confidence            468999999999975 56799999998755321110    011245799999999999999999987532     22445


Q ss_pred             EEEEEEeC---CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec
Q psy12061         73 GRLIVLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA  149 (626)
Q Consensus        73 ~~l~v~~~---p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  149 (626)
                      +.|.|...   |.+.. .|. ..+.+|++++|.|.+.+.+   ..+.|+|||..+........  ......+..|.|.++
T Consensus        97 ~~L~V~~~~~~P~l~~-~p~-~~V~~G~~vtL~C~~~~~~---~~~~w~k~g~~~~~~~~~~~--~~~~~~~~~l~I~~v  169 (257)
T 1b6u_A           97 LDIVITGLYEKPSLSA-QPG-PTVLAGESVTLSCSSRSSY---DMYHLSREGEAHERRFSAGP--KVNGTFQADFPLGPA  169 (257)
T ss_dssp             EEEEEECSSCCCEEEC-SSC-TTCBTTCEEEEEEECSSCC---SEEEEEETTSSCEECCBCBC--CSSSCCBEEEEEEEC
T ss_pred             EEEecccCCCCcceEc-cCC-CccCCCCEEEEEEeCCCCC---cEEEEEECCcccCccccccc--ccCCceeEEEEeccc
Confidence            67888753   33333 333 3678999999999998764   26799999987754321000  000012568999999


Q ss_pred             CCCCCEeEEEEEEeCCC-----ceEEEEEEEEeCCCC
Q psy12061        150 SFADAGEYECVVKSTVG-----KISTKTTVIVEGPPG  181 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g-----~~~~~~~l~v~~~P~  181 (626)
                      +  |+|.|+|.|.+..+     ..+..+.|.|.++|.
T Consensus       170 ~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          170 T--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             C--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             c--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            8  99999999997643     335667888887764

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.81  E-value=3.7e-18  Score=152.24  Aligned_cols=195  Identities=14%  Similarity=0.126  Sum_probs=138.9

Q ss_pred             CCCCCCceeEeecC-CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCC------cceeeeeeeecceeeEEEEeCCCcc
Q psy12061        286 KPYQAPSRIGGGGG-KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT------EFQSETLKEYGNVGIAVVRIPSEFY  358 (626)
Q Consensus       286 ~p~~~p~~~~~~~~-~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~L~p  358 (626)
                      .|+.+|.++..... ...++.|+|++  +.+.+. ...|.|+|+..+..      .+....  .........+.+.+|.+
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p--~~~~~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~   77 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEP--GPETHL-PTSFILKSFRSRADCQYQGDTIPDCV--AKKRQNNCSIPRKNLLL   77 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEEC--CSCCSS-CCEEEEEEEECCGGGCSCCCEEEEEE--CCTTCCEEEEEGGGCCT
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecC--CCCCCC-ceeEEEEEEecCCcccccccccccCC--CCCCCcEEEECCccccc
Confidence            45678999988765 57899999998  334333 45799999875421      121111  11223456778889999


Q ss_pred             eeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEee------ecceEEEEeeeccccccccceeeEEEEEEE
Q psy12061        359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF------NSTAINVTWNPIELIRENIRGRLIGHRIKY  432 (626)
Q Consensus       359 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~------~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~  432 (626)
                      ++.|.|+|.|.|..|.+. +....+.+...+++.+|.++.+...      +.+++.|+|++|...+    ..+.+|.|+|
T Consensus        78 ~~~Y~~~V~A~N~~G~~~-s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~----~~~l~Y~v~y  152 (215)
T 1cd9_B           78 YQYMAIWVQAENMLGSSE-SPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSE----YMEQECELRY  152 (215)
T ss_dssp             TSCEEEEEEEEETTEEEE-CCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGGGT----TSCEEEEEEE
T ss_pred             ceEEEEEEEEECCCCCcc-CccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCCCC----eEEEEEEEEE
Confidence            999999999999999764 5556666666566669999888766      6788999999887422    2247999999


Q ss_pred             E-ecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCC---CCCccEEEeecCC
Q psy12061        433 W-KEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRK  491 (626)
Q Consensus       433 ~-~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s---~~s~~~~~~t~~~  491 (626)
                      + ..+...+.... ........+.+.+|+|++.|.|+|+|.+..|.|   ++|..+.++|.++
T Consensus       153 ~~~~~~~~w~~~~-~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~e~  214 (215)
T 1cd9_B          153 QPQLKGANWTLVF-HLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK  214 (215)
T ss_dssp             EESSTTCCCEEEE-EEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCCC-
T ss_pred             ccCCCCCCcEEEe-cccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecCCC
Confidence            8 55544443222 223345669999999999999999999986654   6788888888754

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.80  E-value=2.7e-19  Score=162.87  Aligned_cols=162  Identities=18%  Similarity=0.282  Sum_probs=112.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--E---Ec---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--N---II---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|.+.+.|.+.|.|+|+.  .   .+         ...+|+.+..++   +|.|.+++.+|+|.|.|.|.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   92 (242)
T 2znx_A           13 VTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSN   92 (242)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeEec
Confidence            579999999999999999999999943  1   11         124566665332   699999999999999999999


Q ss_pred             CCCCc-eeeEEEEEEeCCc-------------eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec---
Q psy12061         65 VHGMD-ESKGRLIVLHGPS-------------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG---  125 (626)
Q Consensus        65 ~~g~~-~~~~~l~v~~~p~-------------~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~---  125 (626)
                      ..+.. ...+.|.|..+|.             .+.. +....+.+|++++|.|.+.+.|.+...+.|+|+  +..+.   
T Consensus        93 ~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~  171 (242)
T 2znx_A           93 SXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQE-SGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMG  171 (242)
T ss_dssp             SSSCEECCCEEEEEC---------------CCEEEE-ECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE
T ss_pred             CCceEECCCEEEEEcCCCCCCcccccccccceeeec-CCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEE
Confidence            86542 2446788866552             3333 334569999999999999988744456799985  33221   


Q ss_pred             ---cccC---CccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeC
Q psy12061        126 ---NMDL---NELETPNINID------GGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus       126 ---~~~~---~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                         ....   ......++...      ...|.|.+++.+|+|.|+|.|.|.
T Consensus       172 ~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          172 YVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             EEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence               0000   00012344432      248999999999999999999873

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.80  E-value=2.6e-19  Score=164.52  Aligned_cols=174  Identities=16%  Similarity=0.191  Sum_probs=118.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EE---c----------cCCCcEEEc-----cCCcEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NI---I----------GSGGRRKIF-----ENGNLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---i----------~~~~~~~~~-----~~g~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++|+|.|.+.+.|.+.|.|+|..  ..   +          ...+|+.+.     .+.+|.|.+++.+|+|.|.|.
T Consensus        15 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~   94 (256)
T 3tf7_C           15 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCA   94 (256)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEE
T ss_pred             ecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEE
Confidence            568999999999999999999999832  11   1          113455552     123699999999999999999


Q ss_pred             EEcCCCC----ceeeEEEEEEe-------------------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEe
Q psy12061         62 ATNVHGM----DESKGRLIVLH-------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT  118 (626)
Q Consensus        62 a~n~~g~----~~~~~~l~v~~-------------------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~  118 (626)
                      |.|..+.    ....+.|.|..                   .+..+...|....+.+|++++|.|.+.+. .+  .+.|+
T Consensus        95 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~--~v~W~  171 (256)
T 3tf7_C           95 VSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HN--YMYWY  171 (256)
T ss_dssp             EECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CS--EEEEE
T ss_pred             EecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ce--EEEEE
Confidence            9997653    22346777765                   23445567888899999999999999887 34  56899


Q ss_pred             eCC--EEecccc------C--CccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEEEeCCCceE--EEEEEEEeC
Q psy12061        119 HNG--VRIGNMD------L--NELETPNINI-----DGGLLEITNASFADAGEYECVVKSTVGKIS--TKTTVIVEG  178 (626)
Q Consensus       119 ~~~--~~~~~~~------~--~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~--~~~~l~v~~  178 (626)
                      |..  .......      .  ......++..     ....|.|.+++.+|+|.|+|.|.|..|...  ....|.|..
T Consensus       172 k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~  248 (256)
T 3tf7_C          172 RQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLE  248 (256)
T ss_dssp             EECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence            832  1111000      0  0000112221     234799999999999999999999877542  234555543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=4e-19  Score=165.72  Aligned_cols=176  Identities=17%  Similarity=0.279  Sum_probs=122.1

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc-----------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII-----------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.|.|  .+.|.|+|++  ..+                 ...+|+.+..+     ++|.|.+++.+|+
T Consensus        38 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds  117 (282)
T 1qok_A           38 VRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDT  117 (282)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhC
Confidence            56899999999999885  5899999953  111                 01357766542     3699999999999


Q ss_pred             EEEEEEEEcCCCC-----ceeeEEEEEEeCC--------------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEE
Q psy12061         56 GIYSCTATNVHGM-----DESKGRLIVLHGP--------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI  116 (626)
Q Consensus        56 G~Y~C~a~n~~g~-----~~~~~~l~v~~~p--------------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~  116 (626)
                      |.|.|.|.|..|.     ....+.|.|...|              ..+..+|....+.+|++++|.|.+.+.+ +  .+.
T Consensus       118 G~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~--~v~  194 (282)
T 1qok_A          118 AVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S--YMH  194 (282)
T ss_dssp             EEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S--CCE
T ss_pred             EEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c--eEE
Confidence            9999999998762     1234678887653              3344557788899999999999999988 5  558


Q ss_pred             Eee--CCEEeccc-----cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCc-eEEEEEEEEeCCC
Q psy12061        117 WTH--NGVRIGNM-----DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVEGPP  180 (626)
Q Consensus       117 W~~--~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~P  180 (626)
                      |+|  +|..+..-     ........++..    ....|.|.+++.+|+|.|+|.|.|..+. ......|.|....
T Consensus       195 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  270 (282)
T 1qok_A          195 WFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKRAA  270 (282)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEeccc
Confidence            999  56544210     000000123322    2347999999999999999999876442 3455677776433

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.80  E-value=8e-19  Score=160.60  Aligned_cols=162  Identities=18%  Similarity=0.244  Sum_probs=112.4

Q ss_pred             CCCCceEEEEeeeCCCC-----CCeeEEEeCC--EE---cc---------CCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-----KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~~---i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++|+|.|.+.+.|     .+.|.|+|++  ..   +.         ..+|+.+..++   +|.|.+++.+|+|.|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   92 (247)
T 1svz_A           13 VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYY   92 (247)
T ss_dssp             ECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEEEE
Confidence            57899999999999988     6899999842  21   11         13566665333   6999999999999999


Q ss_pred             EEEEcCCCC-ceeeEEEEEEeCC------------c-eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EE
Q psy12061         60 CTATNVHGM-DESKGRLIVLHGP------------S-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VR  123 (626)
Q Consensus        60 C~a~n~~g~-~~~~~~l~v~~~p------------~-~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~  123 (626)
                      |.|.|..+. ....+.|.|..++            . .+.. +....+.+|++++|.|.+.+.+.+...+.|+|++  ..
T Consensus        93 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~  171 (247)
T 1svz_A           93 CFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ-SGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGD  171 (247)
T ss_dssp             EEECSSSSCEECCCEEEEEC---------------CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCC
T ss_pred             EEEccCCccEECCCEEEEEECCccccccccccccCceEEeC-CCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCC
Confidence            999998664 2334678886642            2 3333 3445699999999999999886444567999863  21


Q ss_pred             ec------ccc----CCccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeC
Q psy12061        124 IG------NMD----LNELETPNINID------GGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus       124 ~~------~~~----~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      +.      ...    .......++...      ...|.|.+++.+|+|.|+|.|.|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          172 LKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            11      000    000002333332      248999999999999999999985

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=160.90  Aligned_cols=163  Identities=18%  Similarity=0.249  Sum_probs=111.6

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|.|.+.+.  |.+.+.|+|++  ..+            ...+|+.+..++   +|.|.+++.+|+|.|.|.|
T Consensus        14 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   93 (256)
T 3ux9_B           14 GAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYCQV   93 (256)
T ss_dssp             ECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence            5789999999999987  78899999842  111            023566665443   6999999999999999999


Q ss_pred             EcCCCC---ceeeEEEEEEeCCc--------------------eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee
Q psy12061         63 TNVHGM---DESKGRLIVLHGPS--------------------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH  119 (626)
Q Consensus        63 ~n~~g~---~~~~~~l~v~~~p~--------------------~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~  119 (626)
                      .|..+.   ....+.|.|..+|.                    .+.. +....+.+|++++|.|.+.+.+.+...+.|+|
T Consensus        94 ~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r  172 (256)
T 3ux9_B           94 RDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVR  172 (256)
T ss_dssp             EETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             EECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEEEEEE
Confidence            997653   23446788866542                    2333 34556999999999999998774445779998


Q ss_pred             C--CEEeccc-cCC---------ccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061        120 N--GVRIGNM-DLN---------ELETPNINID------GGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus       120 ~--~~~~~~~-~~~---------~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      +  +..+... .+.         .....|+.+.      ...|.|.+++.+|+|.|+|.|.|..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          173 QAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             ECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            6  3322110 000         0001233321      2359999999999999999999864

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.80  E-value=1.3e-20  Score=170.88  Aligned_cols=164  Identities=15%  Similarity=0.187  Sum_probs=95.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++++|.|.+.+.|.+.|.|+|++  ..+            ...+|+.+..++   +|.|.+++.+|+|.|.|.|.|
T Consensus        35 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~  114 (233)
T 3bqu_C           35 MSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSD  114 (233)
T ss_dssp             ------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEEECS
T ss_pred             EecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEEEec
Confidence            678999999999999888899999853  211            112344433222   699999999999999999998


Q ss_pred             CCCCce-eeEEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-c----CCccCCC
Q psy12061         65 VHGMDE-SKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-D----LNELETP  135 (626)
Q Consensus        65 ~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-~----~~~~~~~  135 (626)
                      ..+... ....|.|..   +|.+...++.. .+..|++++|.|.+.+.+++.+++.|+|||..+... .    .......
T Consensus       115 ~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  193 (233)
T 3bqu_C          115 NLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS  193 (233)
T ss_dssp             SSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTC
T ss_pred             CCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCC
Confidence            876432 234666654   44444333332 234799999999999966544678999999987643 1    0000011


Q ss_pred             eeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        136 NINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       136 ~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .+ ...+.|.|..+..+|+|.|+|.|.|....
T Consensus       194 ~~-~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          194 TY-SMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CE-EEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CE-EEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            11 12347899999999999999999997553

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.79  E-value=5.8e-20  Score=162.74  Aligned_cols=161  Identities=16%  Similarity=0.185  Sum_probs=109.1

Q ss_pred             CCCCceEEEEeeeCCCC---C-CeeEEEeCCEEccCCCc---EE-----EccCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAAP---K-PKFVWKKDGNIIGSGGR---RK-----IFENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p---~-p~i~W~~~~~~i~~~~~---~~-----~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.|.|   . +.|.|+|++..+.....   ..     ....++|.|.+++.+|+|.|+|.|.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            46899999999999884   3 49999999987742210   00     1112369999999999999999999988864


Q ss_pred             eeeEEE----EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC---
Q psy12061         70 ESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG---  142 (626)
Q Consensus        70 ~~~~~l----~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~---  142 (626)
                      .....+    .+..+|.+...++... ...|+.++|.|.+.+.+++.+++.|+|||..+......    ......++   
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~----~~~~~~~g~~~  169 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNT----QPIMDTDGSYF  169 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEEC----CCEECTTSCEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccC----CceECCCCCEE
Confidence            332333    3344666544433322 23599999999999965555678999999987543100    00111223   


Q ss_pred             ---eEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        143 ---LLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       143 ---~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                         .|.|......|.|.|+|.|.|....
T Consensus       170 ~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          170 VYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence               3555555556899999999997653

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.79  E-value=3.4e-19  Score=159.89  Aligned_cols=168  Identities=17%  Similarity=0.299  Sum_probs=117.2

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EE---c---cC-------------CCcEEEccC---C--cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NI---I---GS-------------GGRRKIFEN---G--NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---i---~~-------------~~~~~~~~~---g--~L~i~~v~~~   53 (626)
                      +.+|++++|.|.+.+.|  .+.|.|+|++  ..   +   ..             .+|+.+..+   +  +|.|.+++.+
T Consensus        12 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   91 (220)
T 1pz5_B           12 VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAE   91 (220)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHH
Confidence            57899999999999876  6899999953  21   1   00             357776532   2  7999999999


Q ss_pred             CCEEEEEEEEcCCCCc-e--eeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEec
Q psy12061         54 DSGIYSCTATNVHGMD-E--SKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIG  125 (626)
Q Consensus        54 d~G~Y~C~a~n~~g~~-~--~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~  125 (626)
                      |+|.|.|.+.|..+.. .  ..+.|.|..    +|.+...++ ...+.+|+.++|.|.+.+. |.| +++.|++++....
T Consensus        92 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~  169 (220)
T 1pz5_B           92 DTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGSSVTLGCLVKGYFPEP-VTVKWNYGALSSG  169 (220)
T ss_dssp             GCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC-CSCCSCSSSEEEEEEEEEEBSSC-CEEEEGGGTCCTT
T ss_pred             HCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc-ccccCCCCcEEEEEEEEEEeCCC-eEEEEecCCcccc
Confidence            9999999999976532 2  456787763    344444333 2345789999999999997 665 4679999887421


Q ss_pred             cccCCcc-CCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061        126 NMDLNEL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus       126 ~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      ....... ....+ ...+.|.|.++...| |.|+|.|.|..|..+..+.
T Consensus       170 ~~~~~~~~~~~~~-~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          170 VRTVSSVLQSGFY-SLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EEECCCEEETTEE-EEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             eEEcCCcccCCeE-EEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            0000000 01122 134678999988766 9999999999997666554

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.79  E-value=4.9e-19  Score=164.18  Aligned_cols=164  Identities=20%  Similarity=0.274  Sum_probs=117.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE------------ccC----CCcEEEcc----CCcEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI------------IGS----GGRRKIFE----NGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~------------i~~----~~~~~~~~----~g~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++|+|.|.+. .+.+.|.|+|  .+..            ...    ++|+.+..    +++|.|.+++.+|+|.|.
T Consensus        38 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~  116 (268)
T 3pl6_D           38 TEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYL  116 (268)
T ss_dssp             EETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEEE
T ss_pred             ecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEEE
Confidence            56899999999987 5778999999  2221            111    16777765    346999999999999999


Q ss_pred             EEEEcC--CCCceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc
Q psy12061         60 CTATNV--HGMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        60 C~a~n~--~g~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      |.+.|.  .+.......|.|..      +|.+....+....+..|+.++|.|.+.+.+++.+.+.|+|||..+.......
T Consensus       117 C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~  196 (268)
T 3pl6_D          117 CATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTD  196 (268)
T ss_dssp             EEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEEC
T ss_pred             EEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEec
Confidence            999984  33344556788875      4555555556666677999999999999776656889999999986531100


Q ss_pred             ---------cCCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCCc
Q psy12061        132 ---------LETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGK  167 (626)
Q Consensus       132 ---------~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~  167 (626)
                               .....+. ..+.|.|......| .|.|+|.|.|....
T Consensus       197 ~~~~~~~~~~~~~~~~-~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          197 PQPLKEQPALNDSRYS-LSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SSCEESSTTCTTCCEE-EEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             cccccccccCCCCcEE-EEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence                     0111111 22467888877777 99999999987654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.79  E-value=7.5e-19  Score=160.61  Aligned_cols=164  Identities=20%  Similarity=0.272  Sum_probs=117.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--------------CCEEccC----CCcEEEccCC----cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--------------DGNIIGS----GGRRKIFENG----NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--------------~~~~i~~----~~~~~~~~~g----~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++++|.| ..+.|.+.|.|+|              ++..+..    .+|+.+..++    +|.|.+++.+|+|.|.
T Consensus        14 v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~   92 (245)
T 4ei6_B           14 IDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYF   92 (245)
T ss_dssp             EETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEEEE
T ss_pred             ecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCEEEE
Confidence            56899999999 6678889999998              3332221    1677776532    6999999999999999


Q ss_pred             EEEEcCC----CCceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC
Q psy12061         60 CTATNVH----GMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL  129 (626)
Q Consensus        60 C~a~n~~----g~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~  129 (626)
                      |.|.+..    +.....+.|.|..      +|.+....|....+..|+.++|.|.+.+.+++.+.+.|++||..+.....
T Consensus        93 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~  172 (245)
T 4ei6_B           93 CASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVC  172 (245)
T ss_dssp             EEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred             EEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcc
Confidence            9999632    2334456788873      55555555666666779999999999995554467899999999875321


Q ss_pred             Ccc---------CCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCCc
Q psy12061        130 NEL---------ETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGK  167 (626)
Q Consensus       130 ~~~---------~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~  167 (626)
                      ...         ....+. ....|.|......| .|.|+|.|.|....
T Consensus       173 ~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          173 TDPQPLKEQPALNDSRYA-LSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             ECSSCEESSTTSTTCCEE-EEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             cccccccccccCCCCCEE-EEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            000         011111 12358888887778 99999999987554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.79  E-value=3.5e-19  Score=160.12  Aligned_cols=163  Identities=15%  Similarity=0.259  Sum_probs=113.9

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc-----------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII-----------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      +.+|++|+|.|.+.|.|  .+.|.|+|+.  ..+                 ...+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~   91 (225)
T 1op3_H           12 VKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDT   91 (225)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhC
Confidence            56899999999999887  6899999842  211                 02357777642     3799999999999


Q ss_pred             EEEEEEEEcCCC-----C---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCE
Q psy12061         56 GIYSCTATNVHG-----M---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGV  122 (626)
Q Consensus        56 G~Y~C~a~n~~g-----~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~  122 (626)
                      |.|.|.+.|..|     .   ....+.|.|..    +|.+....|.. .+..|+.++|.|.+.+. |.| +.+.|++++.
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~  169 (225)
T 1op3_H           92 AIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEP-VTVSWNSGAL  169 (225)
T ss_dssp             EEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSC-CEEECCTTSC
T ss_pred             EEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCC-eEEEEecCCC
Confidence            999999999865     2   12356888875    34444433333 25689999999999987 543 5789999987


Q ss_pred             EeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        123 RIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       123 ~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .+.......  ...+.+. ..+.|.|.++...| |.|+|.|.|..+..
T Consensus       170 ~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          170 TSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             CTTCEECCCEECTTSCEE-EEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             cCCeEecCceeCCCCCEE-EEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            642111000  0011111 23468999998888 99999999977653

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.79  E-value=4.4e-18  Score=166.13  Aligned_cols=271  Identities=14%  Similarity=0.139  Sum_probs=181.1

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCC--CCEeEEEEEEe
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA--DAGEYECVVKS  163 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~g~Y~C~a~n  163 (626)
                      ..|++..+..|+++++.|.....    . .....++.....        .+.......++|.|+...  ....|.|... 
T Consensus       203 ifP~~~vv~~GS~vt~~Ci~~~~----~-~~~~l~~~~~~~--------~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~-  268 (483)
T 3e0g_A          203 VFPQDKVILVGSDITFCCVSQEK----V-LSALIGHTNCPL--------IHLDGENVAIKIRNISVSASSGTNVVFTTE-  268 (483)
T ss_dssp             EESCSEEEETTCCEEEEECCSSC----E-EEEESSSCCBCC--------EECSSSCEEEEECSCCCCCSSCEEEEEEES-
T ss_pred             EeccCCEEeCCCCEEEEEEeCcc----c-cceecCccccee--------EEecCCEEEEEEeCCCCccCccceEEEecC-
Confidence            34778889999999999988732    1 122222222111        011113446677777653  2347999852 


Q ss_pred             CCCceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCC---CcccEEEEEEeecCCCCceEeecceeeeeeecc
Q psy12061        164 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG---RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY  240 (626)
Q Consensus       164 ~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~---~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~  240 (626)
                         .....+.|.+..||.+|.++.|......++.++|+++.+.+   ...+.|.|.++..+..  ........     ..
T Consensus       269 ---~~~~g~~l~vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~~--~~C~~~~~-----~~  338 (483)
T 3e0g_A          269 ---DNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY--VRLKRAEA-----PT  338 (483)
T ss_dssp             ---SCEEEEEEEEECCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCCE--EEECCCSS-----CS
T ss_pred             ---CcccceEEECcCCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCCC--ccccCCcc-----cC
Confidence               24567789999999999999998888889999999976653   2378999998754221  11111000     00


Q ss_pred             CCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecCCcCeEEEEEeeCCCCCcccCc
Q psy12061        241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN  320 (626)
Q Consensus       241 ~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~  320 (626)
                      .....+.+.. +.+.+.|.|+|.|.|..|..... .  .+......++.+|.++.+.....+.+.|+|+++  ...+...
T Consensus       339 ~~~~~C~~~~-l~~~t~Y~f~V~A~N~lG~~~S~-~--~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P--~~~~~~~  412 (483)
T 3e0g_A          339 NESYQLLFQM-LPNQEIYNFTLNAHNPLGRSQST-I--LVNITEKVYPHTPTSFKVKDINSTAVKLSWHLP--GNFAKIN  412 (483)
T ss_dssp             CSCEEEEEEC-CTTCCCEEEEEEEECSSCEEEEE-E--EECGGGGBCCCCCEEEEECCSSSSSCCEEEECC--SCCTTSB
T ss_pred             CCEEEEEEcc-CCCCcEEEEEEEEEeCCCCcccc-e--EEEeccccCCCCCeeeEEEEecCCeEEEEECCC--CCCCCce
Confidence            1234566655 89999999999999999977532 1  333334455579999999877889999999984  3445567


Q ss_pred             ceEEEEEEecCCC-cceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCC---CCCCccEEEEccCC
Q psy12061        321 IYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP---GPESEVVTIFSAED  388 (626)
Q Consensus       321 ~~y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~---~~~s~~~~~~t~~~  388 (626)
                      ..|.|+|+..+.. .|....... .......+.+.+|.|++.|.|+|+|. ..|.   |+||....++|.++
T Consensus       413 L~YeVrYr~~~~~~~~~~vsv~~-~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E~  482 (483)
T 3e0g_A          413 FLCEIEIKKSNSVQEQRNVTIQG-VENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTEA  482 (483)
T ss_dssp             CCCEEEEECSSSCCCEEECCCBC-CSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEEEEECCCCCceEEEEEec-cCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCCC
Confidence            8999999987643 354322211 11123356799999999999999999 6665   67777777776543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=166.97  Aligned_cols=171  Identities=16%  Similarity=0.158  Sum_probs=119.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceee-EEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~   78 (626)
                      +.+|++++|.|.+. .|.|.+.|++++  .++.  .. .....+ +.    ...|+|.|+|.|.|..+...+. ..|.|.
T Consensus       107 v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~--~~-~~~~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~  177 (289)
T 3mjg_X          107 LTEITEITIPCRVT-DPQLVVTLHEKKGDVALP--VP-YDHQRG-FS----GIFEDRSYICKTTIGDREVDSDAYYVYRL  177 (289)
T ss_dssp             ESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC--CC-EETTTE-EE----ECCCSSEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eecCCeEEEEeEcC-CCCceEEEEeCCCCCccc--ee-ecCCcC-ee----eeccCcEEEEEEEeCCceeeeeeEEEEec
Confidence            57899999999999 788899999865  3332  11 111112 21    3679999999999877665443 566665


Q ss_pred             e--CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCC
Q psy12061         79 H--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADA  154 (626)
Q Consensus        79 ~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~  154 (626)
                      .  +|.+.. .+....+.+|++++|.|.+.+.|.|  .+.|++++..........  ..........+.|.|.+++.+|+
T Consensus       178 ~~~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  254 (289)
T 3mjg_X          178 QVSSINVSV-NAVQTVVRQGENITLMCIVIGNEVV--NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDS  254 (289)
T ss_dssp             CCCCCCCEE-EESCSEEETTSCEEEEEEEESCSSB--EEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCC
T ss_pred             CCCCCCcEE-eCCcceeEcCCCEEEEEEECCCCCc--ceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhC
Confidence            5  444443 4455789999999999999998876  569998876543321000  00000012346899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |.|+|.|.|..|..+.++.|.|...|....
T Consensus       255 G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~  284 (289)
T 3mjg_X          255 GTYTCNVTESVNDHQDEKAINITVVESGHH  284 (289)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEEEC----
T ss_pred             cEEEEEeecCCCCceeEEEEEEEEEecCcc
Confidence            999999999999999999999998776543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.79  E-value=3.7e-19  Score=160.32  Aligned_cols=168  Identities=15%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEeC--CEEc----c------------CCCcEEEccC-----CcEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKKD--GNII----G------------SGGRRKIFEN-----GNLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~~--~~~i----~------------~~~~~~~~~~-----g~L~i~~v~~~d   54 (626)
                      |.+|++|+|.|.+.+.|.    +.|.|+|+  +..+    .            ..+|+.+..+     .+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   91 (228)
T 3bae_H           12 LKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTAD   91 (228)
T ss_dssp             ECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCccc
Confidence            578999999999999875    89999984  2221    0            1357776532     479999999999


Q ss_pred             CEEEEEEEEcCCC------C---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeC
Q psy12061         55 SGIYSCTATNVHG------M---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHN  120 (626)
Q Consensus        55 ~G~Y~C~a~n~~g------~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~  120 (626)
                      +|.|.|.+.|..|      .   ....+.|.|..    +|.+...+|. ..+..|+.++|.|.+.+. |.| +.+.|+++
T Consensus        92 ~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p-~~v~W~~~  169 (228)
T 3bae_H           92 TATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEP-VTLTWNSG  169 (228)
T ss_dssp             CEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSC-CEEEEGGG
T ss_pred             CEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCC-EEEEEeeC
Confidence            9999999999865      1   12347888863    4545444333 346789999999999986 554 57799999


Q ss_pred             CEEeccccCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061        121 GVRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus       121 ~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      +..+....... .....+ ...+.|.|..+...| |.|+|.|.|..|.......
T Consensus       170 ~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          170 SLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             TCCTTEEEEEEEEETTEE-EEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CcccCceEcCceeCCCcE-EEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence            87542110000 000111 123568999888766 9999999999887654443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.78  E-value=6.5e-20  Score=163.80  Aligned_cols=161  Identities=15%  Similarity=0.196  Sum_probs=107.2

Q ss_pred             CCCCceEEEEeeeCCC---CC-CeeEEEeCCEEccCCCcE--EEc------cCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAA---PK-PKFVWKKDGNIIGSGGRR--KIF------ENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~-p~i~W~~~~~~i~~~~~~--~~~------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.|.   |. +.|.|+|++..+......  ...      ..++|.|.+++.+|+|.|+|.|.|..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            5689999999999987   34 799999999887532111  111      12369999999999999999999987754


Q ss_pred             eeeEEE----EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC---
Q psy12061         70 ESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG---  142 (626)
Q Consensus        70 ~~~~~l----~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~---  142 (626)
                      .....+    .+..+|.+...++.... ..|+.++|.|.+.|.+++.++|.|+|||..+.....    .......++   
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~----~~~~~~~~gt~~  177 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKD----TAPVLDSDGSYF  177 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE----CCCEECTTSCEE
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEEECCEeccCcee----cccEECCCCCEE
Confidence            222222    33345655444443322 359999999999994333357899999998853210    001112233   


Q ss_pred             ---eEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        143 ---LLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       143 ---~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                         .|.|......|.|.|+|.|.|....
T Consensus       178 ~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          178 IYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence               3444444444699999999997654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.78  E-value=5.6e-19  Score=168.26  Aligned_cols=169  Identities=20%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCCCc-----eee
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMD-----ESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~-----~~~   72 (626)
                      +.+|++++|.|.+.+ +++.+.|+|+|..+....+....    .++.|.|.+++.+|+|.|+|.|.|..|..     ...
T Consensus       130 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~  208 (316)
T 3vh8_G          130 VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDP  208 (316)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCC
T ss_pred             cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCC
Confidence            458999999999954 56799999999887533221111    23579999999999999999999998752     444


Q ss_pred             EEEEEEe---CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec
Q psy12061         73 GRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA  149 (626)
Q Consensus        73 ~~l~v~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  149 (626)
                      ..|.|..   +|.+... |. ..+.+|++++|.|.+.. |.  ..+.|+|+|..+........  .........|.|.++
T Consensus       209 ~~l~V~~~~~~p~i~~~-~~-~~v~~G~~v~L~C~~~~-~~--~~~~W~k~g~~~~~~~~~~~--~~~~~~~~~L~i~~v  281 (316)
T 3vh8_G          209 LDIVVTGPYEKPSLSAQ-PG-PKVQAGESVTLSCSSRS-SY--DMYHLSREGGAHERRLPAVR--KVNRTFQADFPLGPA  281 (316)
T ss_dssp             EEEEEECSSCCCEEEEE-SC-SCCCTTSCCEEEEEESS-CC--SEEEEEETTSSCCEEEECEE--CTTSCEEEEEECC--
T ss_pred             EEEEecCCCCCCeEEeC-CC-CeecCCCcEEEEEECCC-CC--cEEEEEECCCcCCCceecee--ccCCceeEEEEcCCc
Confidence            6777764   3333332 33 36789999999999974 33  36799999987653210000  000002258999999


Q ss_pred             CCCCCEeEEEEEEeCCCc-----eEEEEEEEEeCCC
Q psy12061        150 SFADAGEYECVVKSTVGK-----ISTKTTVIVEGPP  180 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~-----~~~~~~l~v~~~P  180 (626)
                      +  |+|.|+|.|.|..+.     .+..+.|.|.++|
T Consensus       282 ~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          282 T--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             -----CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             C--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            8  999999999997763     4666777777765

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.78  E-value=3.8e-18  Score=153.00  Aligned_cols=168  Identities=13%  Similarity=0.243  Sum_probs=116.2

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--E---Ec--------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--N---II--------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~i--------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.|  .+.|.|+|++  .   .+              ...+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~   91 (223)
T 1dee_B           12 VQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDT   91 (223)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHC
Confidence            57899999999998876  4799999842  1   11              01357777643     2699999999999


Q ss_pred             EEEEEEEEcCCC---C---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEee-CCEE
Q psy12061         56 GIYSCTATNVHG---M---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTH-NGVR  123 (626)
Q Consensus        56 G~Y~C~a~n~~g---~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~-~~~~  123 (626)
                      |.|.|.+.+..|   .   ....+.|.|..    +|.+....|.. .+..|+.++|.|.+.+. |.| +++.|++ ||..
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~g~~  169 (223)
T 1dee_B           92 AVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQDFLPDS-ITFSWKYKNNSD  169 (223)
T ss_dssp             EEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEEEEBSSC-CEEEEEETTSCB
T ss_pred             EEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEEEEeCCC-eEEEeEccCCCc
Confidence            999999998764   1   12346888863    34443322222 35789999999999987 543 5779999 9888


Q ss_pred             ecccc-CCc-cCCCeeEecCCeEEEeecCC--CCCEeEEEEEEeCCCceEEEE
Q psy12061        124 IGNMD-LNE-LETPNINIDGGLLEITNASF--ADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       124 ~~~~~-~~~-~~~~~~~~~~~~l~i~~~~~--~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      +.... ... .....+. ..+.|.|.....  .|.|.|+|.|.|..+......
T Consensus       170 l~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          170 ISSTRGFPSVLRGGKYA-ATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             CSCEEECCCEEETTEEE-EEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             cceeEECCccccCCeEE-EEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            75410 000 0012222 235688888776  789999999999998765544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=158.51  Aligned_cols=174  Identities=14%  Similarity=0.172  Sum_probs=117.8

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--EEc-----------------cCCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--NII-----------------GSGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~i-----------------~~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  |.+.+.|+|..  ..+                 ...+|+.+..++     +|.|.+++.+|+
T Consensus        18 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   97 (256)
T 3juy_B           18 KKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADT   97 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccC
Confidence            5789999999999884  67899999732  111                 013577776332     499999999999


Q ss_pred             EEEEEEEEcC------------CCCceeeEEEEEEeC--------------CceeeeCCCceEEecCCcEEEEEEecccC
Q psy12061         56 GIYSCTATNV------------HGMDESKGRLIVLHG--------------PSYYEQLPPKITIAAHRNLQLRCSAHTEE  109 (626)
Q Consensus        56 G~Y~C~a~n~------------~g~~~~~~~l~v~~~--------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p  109 (626)
                      |.|.|.|.|.            .+.....+.|.|...              +..+...|....+.+|++++|.|.+.+.+
T Consensus        98 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~  177 (256)
T 3juy_B           98 AVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSI  177 (256)
T ss_dssp             EEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             EEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCc
Confidence            9999999987            233445577888664              23445567889999999999999999976


Q ss_pred             CcceeEEEeeC--CEEecc---cc--CCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEE
Q psy12061        110 LLDVAYIWTHN--GVRIGN---MD--LNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV  176 (626)
Q Consensus       110 ~p~~~i~W~~~--~~~~~~---~~--~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v  176 (626)
                      . ...+.|+|.  +.....   ..  .......++..    ....|.|.+++.+|+|.|+|.|.|..+.. .....|.|
T Consensus       178 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          178 R-SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLER  255 (256)
T ss_dssp             T-TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred             C-CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence            5 135689883  222210   00  00000122222    22369999999999999999999865432 33344444

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.78  E-value=2.2e-17  Score=153.98  Aligned_cols=256  Identities=17%  Similarity=0.191  Sum_probs=151.2

Q ss_pred             EecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061         93 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus        93 v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      +..|++++|.|.+...+    .|.|++||.....            ..++.|.|.+++..|+|.|+|.+   .|.....+
T Consensus        18 ~~~G~~v~l~C~~~~~~----~i~W~~~~~~~~~------------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~   78 (306)
T 3d85_D           18 DAPGEMVVLTCDTPEED----GITWTLDQSSEVL------------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHS   78 (306)
T ss_dssp             SCCCEEEEEECSSSCCS----SCEEEETTCCCCC------------EESSEEEEEECSGGGCEEEEEEE---TTEEEEEE
T ss_pred             CccCCcEEEECCCCCCC----cCEEEECCccccC------------CCCCEEEEEecCcCCCceEEEee---CCcccceE
Confidence            45799999999988432    4689999875321            25689999999999999999999   46666666


Q ss_pred             EEEEeC----------------CCCCCCceEEEEEecc-ceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061        173 TVIVEG----------------PPGLPGGVQVVEVHKT-SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK  235 (626)
Q Consensus       173 ~l~v~~----------------~P~~p~~~~~~~~~~~-~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~  235 (626)
                      .|.|..                ||. +.++.|...... .+++.|++..+. .....|...+. .....|..........
T Consensus        79 ~l~v~~~~~~~~~t~i~~~~~~pp~-~~~lsC~~~~~~~~~~C~W~pg~~~-~l~~~~~~~r~-~~~~~~~~C~~~~~~~  155 (306)
T 3d85_D           79 LLLLHKKEDGIWSTDILKDQKEPKN-KTFLRCEAKNYSGRFTCWWLTTIST-DLTFSVKSSRG-SSDPQGVTCGAATLSA  155 (306)
T ss_dssp             EEEEEEEETTEECCCSSCCCC---C-CCCCEEEBSSSSSEEEEEEEESCCS-SEEEEEEEEEC-SSSCEEEEECCCEEEE
T ss_pred             EEEEEeccCCcceeeeecccCCCCC-CCcceEEcCCcccCcEEEecCCCCC-ceeEEEEEEec-CCCCcceECCCCCCCc
Confidence            665531                233 336777655444 899999987552 22234443321 1122344332211111


Q ss_pred             eeeccCCce-eEEE---EeeccCC----ceEEEEEEEecCCccCCCCCCCCcccCCCCCCCCCCceeEeecC-CcCeEEE
Q psy12061        236 EVDRYTGRK-EASI---ENVLVPW----STYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG-KIGDLSI  306 (626)
Q Consensus       236 ~~~~~~~~~-~~~i---~~~l~~~----~~y~~~v~a~n~~g~~~~s~~~~~~~~~~~~p~~~p~~~~~~~~-~~~~v~l  306 (626)
                      ....+.+.. ...+   ...+.+.    ..|.|+|.|.|..|...+..   .+.......+.||.++.+... ....+.|
T Consensus       156 ~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~---~f~~~~iVkPdPP~~l~~~~~~~~~~l~v  232 (306)
T 3d85_D          156 ERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTS---SFFIRDIIKPDPPKNLQLKPLKNSRQVEV  232 (306)
T ss_dssp             EEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEE---EECHHHHBCCCCCEEEEEEEC----CEEE
T ss_pred             cceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccce---EEEehhcEecCCCceEEEEEecCCCcEEE
Confidence            111111111 0111   0112333    58999999999999653332   222111223358889988864 3489999


Q ss_pred             EEeeCCCCCcccC----cceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEE
Q psy12061        307 SWEPLPREKQNAP----NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT  382 (626)
Q Consensus       307 ~W~~~~~~~~~~~----~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~  382 (626)
                      +|+++.  ..+.+    ...|.|+|+..+...|......   +.  ..+.+.   +++.|.|+|+|.+..|.|.||++..
T Consensus       233 sW~~P~--~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~---~~--ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          233 SWEYPD--TWSTPHSYFSLTFCVQVQGKSKREKKDRVFT---DK--TSATVI---CRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             EEECCT--TSCSCTTTSCEEEEEEEECC------CEEEE---SS--SEEEEC---CCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             EEcCCC--CCcCCCceeeEEEEEEEEECCCCccEEEeec---cc--cEEEEe---CCCeEEEEEEeccCCCCCCCCCCCC
Confidence            999843  33332    3689999998775555433221   11  234443   5899999999999989899988775


Q ss_pred             E
Q psy12061        383 I  383 (626)
Q Consensus       383 ~  383 (626)
                      .
T Consensus       303 ~  303 (306)
T 3d85_D          303 V  303 (306)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.78  E-value=3e-17  Score=153.02  Aligned_cols=245  Identities=13%  Similarity=0.117  Sum_probs=141.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +..|++|+|.|.+.. +. .|.|++||.....      ..+++|.|.+++..|+|.|+|.|   .|.....+.|.|..++
T Consensus        18 ~~~G~~v~l~C~~~~-~~-~i~W~~~~~~~~~------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~~~~   86 (306)
T 3d85_D           18 DAPGEMVVLTCDTPE-ED-GITWTLDQSSEVL------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKE   86 (306)
T ss_dssp             SCCCEEEEEECSSSC-CS-SCEEEETTCCCCC------EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEEEEE
T ss_pred             CccCCcEEEECCCCC-CC-cCEEEECCccccC------CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEEecc
Confidence            568999999999984 33 8999999975422      25678999999999999999999   3666667777765422


Q ss_pred             ------ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC---CccCCCee-E-----ecCCeEEE
Q psy12061         82 ------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL---NELETPNI-N-----IDGGLLEI  146 (626)
Q Consensus        82 ------~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~---~~~~~~~~-~-----~~~~~l~i  146 (626)
                            .++..++ .   .. ....|.|.+...+. .+...|..++.......+   ........ .     .....+.|
T Consensus        87 ~~~~~t~i~~~~~-~---pp-~~~~lsC~~~~~~~-~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~~~~~~~~~c~v  160 (306)
T 3d85_D           87 DGIWSTDILKDQK-E---PK-NKTFLRCEAKNYSG-RFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG  160 (306)
T ss_dssp             TTEECCCSSCCCC--------CCCCCEEEBSSSSS-EEEEEEEESCCSSEEEEEEEEECSSSCEEEEECCCEEEEEEEC-
T ss_pred             CCcceeeeecccC-C---CC-CCCcceEEcCCccc-CcEEEecCCCCCceeEEEEEEecCCCCcceECCCCCCCccceee
Confidence                  1111110 0   00 12234444433321 234444443320000000   00000000 0     00011111


Q ss_pred             eec-----------------CCCCCEeEEEEEEeCCCceEEEEEEEE--eCCCCCCCceEEEEEec-cceEEEEecCCCC
Q psy12061        147 TNA-----------------SFADAGEYECVVKSTVGKISTKTTVIV--EGPPGLPGGVQVVEVHK-TSATIQWTDGATN  206 (626)
Q Consensus       147 ~~~-----------------~~~d~g~Y~C~a~n~~g~~~~~~~l~v--~~~P~~p~~~~~~~~~~-~~~~l~W~~~~~~  206 (626)
                      .+.                 .......++|.|.|..|..+....+.+  ...|.||.++.+..... ..+.|+|++|...
T Consensus       161 ~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~  240 (306)
T 3d85_D          161 DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTW  240 (306)
T ss_dssp             -CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTS
T ss_pred             cCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCC
Confidence            110                 122456789999999997766655544  46899999999976443 8999999998644


Q ss_pred             CCc----ccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCCCCCC
Q psy12061        207 GRP----ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS  277 (626)
Q Consensus       207 ~~~----~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~s~~~  277 (626)
                      ..+    .+.|.|+|+..+...|.....          ...+++   . |.++..|.|+|+|.+..|.+.+|..+
T Consensus       241 ~~p~~~~~L~Y~vryr~~~~~~~~~~~~----------~~~ts~---~-l~~~~~Y~vqVRa~~~~~~G~WSeWS  301 (306)
T 3d85_D          241 STPHSYFSLTFCVQVQGKSKREKKDRVF----------TDKTSA---T-VICRKNASISVRAQDRYYSSSWSEWA  301 (306)
T ss_dssp             CSCTTTSCEEEEEEEECC------CEEE----------ESSSEE---E-ECCCSSCEEEEEEEESSSCCCCCCCE
T ss_pred             cCCCceeeEEEEEEEEECCCCccEEEee----------ccccEE---E-EeCCCeEEEEEEeccCCCCCCCCCCC
Confidence            333    379999999877655643311          011122   2 56799999999999998888777764

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.78  E-value=1.6e-18  Score=159.72  Aligned_cols=162  Identities=18%  Similarity=0.286  Sum_probs=113.1

Q ss_pred             CCCCceEEEEeeeCCCC------CCeeEEEeC--CEEc------------cCCCcEEEccC---CcEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP------KPKFVWKKD--GNII------------GSGGRRKIFEN---GNLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p------~p~i~W~~~--~~~i------------~~~~~~~~~~~---g~L~i~~v~~~d~G~Y   58 (626)
                      |.+|++|+|.|.+.+.|      .+.|.|+|+  |..+            ...+|+.+..+   .+|.|.+++.+|+|.|
T Consensus        17 v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y   96 (264)
T 2gjj_A           17 VSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVY   96 (264)
T ss_dssp             EETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             ecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCEEE
Confidence            56899999999999988      679999994  3211            12467666543   3799999999999999


Q ss_pred             EEEEEcCCCC-ceeeEEEEEEeCC------------------ce-eeeCCCceEEecCCcEEEEEEecccCCcceeEEEe
Q psy12061         59 SCTATNVHGM-DESKGRLIVLHGP------------------SY-YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT  118 (626)
Q Consensus        59 ~C~a~n~~g~-~~~~~~l~v~~~p------------------~~-~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~  118 (626)
                      .|.|.|..+. ....+.|.|..+|                  .+ +.. +....+.+|++++|.|.+.+.+.+...+.|+
T Consensus        97 ~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  175 (264)
T 2gjj_A           97 YCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKTGASVKISCKASGYSFTGYFINWV  175 (264)
T ss_dssp             EEEECSSSSCEECCCEEEEEECC-------------------CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             EEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcCCCcEEEEEEEeCCccCCeEEEEE
Confidence            9999987654 2345688887653                  22 333 3345799999999999999887533467999


Q ss_pred             eCC--EE---ec---ccc----CCccCCCeeEe------cCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061        119 HNG--VR---IG---NMD----LNELETPNINI------DGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus       119 ~~~--~~---~~---~~~----~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      |+.  ..   +.   ...    .......++.+      ....|.|.+++.+|+|.|+|.+.|.
T Consensus       176 r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          176 KKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            863  21   11   000    00000123322      2358999999999999999999985

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.77  E-value=7e-19  Score=176.94  Aligned_cols=168  Identities=17%  Similarity=0.292  Sum_probs=112.1

Q ss_pred             CCCCceEEEEeeeCCC-CC-CeeEEEeCCEEccCCC-cEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGG-RRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~-~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +.+|++++|.|.+.|. |. +.|.|+|++..+.... ...+..+|      .|.|.+++.+| |.|+|.|.|..+.....
T Consensus       144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~  222 (457)
T 1hzh_H          144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  222 (457)
T ss_dssp             CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCccee
Confidence            4689999999999987 65 7999999997653111 11112233      59999999999 99999999987765444


Q ss_pred             EEEEEE-----------------eCCceeeeCCCceE-EecCCcEEEEEEecccCCc--ceeEEEeeCCEEeccccCCcc
Q psy12061         73 GRLIVL-----------------HGPSYYEQLPPKIT-IAAHRNLQLRCSAHTEELL--DVAYIWTHNGVRIGNMDLNEL  132 (626)
Q Consensus        73 ~~l~v~-----------------~~p~~~~~~~~~~~-v~~g~~~~l~C~~~~~p~p--~~~i~W~~~~~~~~~~~~~~~  132 (626)
                      ..+.+.                 .+|.+...+|.... +.+|++++|.|.+.+.|++  .+.|.|+|++..+.....   
T Consensus       223 ~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~---  299 (457)
T 1hzh_H          223 KKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT---  299 (457)
T ss_dssp             EECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEE---
T ss_pred             EEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccc---
Confidence            444322                 13444334444332 6789999999999987653  357899999998864210   


Q ss_pred             CCCeeEecCCeEEEeec---CCCC---CEeEEEEEEeCCCceEEEEEE
Q psy12061        133 ETPNINIDGGLLEITNA---SFAD---AGEYECVVKSTVGKISTKTTV  174 (626)
Q Consensus       133 ~~~~~~~~~~~l~i~~~---~~~d---~g~Y~C~a~n~~g~~~~~~~l  174 (626)
                       .......++.|.|.+.   ...|   +|.|+|.|.|..+.......+
T Consensus       300 -~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v  346 (457)
T 1hzh_H          300 -KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI  346 (457)
T ss_dssp             -EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred             -ccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence             0112234455665532   3555   999999999876655444333

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.77  E-value=2.9e-18  Score=156.08  Aligned_cols=163  Identities=19%  Similarity=0.249  Sum_probs=114.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--------------CCEEcc---CCCcEEEccCC----cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--------------DGNIIG---SGGRRKIFENG----NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--------------~~~~i~---~~~~~~~~~~g----~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|.+.+ |.+.|.|+|              ++....   ..+|+.+..++    +|.|.+++.+|+|.|.|
T Consensus        14 v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   92 (240)
T 3q5y_A           14 KEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFC   92 (240)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEE
T ss_pred             ecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEE
Confidence            578999999999986 788999999              222221   13577766432    69999999999999999


Q ss_pred             EEEcCC---CCceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc
Q psy12061         61 TATNVH---GMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        61 ~a~n~~---g~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      .|.+..   ......+.|.|..      +|.+....+....+..|+.++|.|.+.+.+++.+.+.|++||..+.......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~  172 (240)
T 3q5y_A           93 ASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTD  172 (240)
T ss_dssp             EEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEC
T ss_pred             EEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecC
Confidence            998432   2233456788863      4555545556666678999999999999544446789999999986532100


Q ss_pred             cCCCeeEecC------CeEEEeecCCCC-CEeEEEEEEeCCCc
Q psy12061        132 LETPNINIDG------GLLEITNASFAD-AGEYECVVKSTVGK  167 (626)
Q Consensus       132 ~~~~~~~~~~------~~l~i~~~~~~d-~g~Y~C~a~n~~g~  167 (626)
                      .  ......+      +.|.|......| .|.|+|.|.|....
T Consensus       173 ~--~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          173 P--QAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             S--SCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             C--ceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            0  0011112      348899988888 77999999987654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.77  E-value=5.6e-20  Score=183.59  Aligned_cols=163  Identities=13%  Similarity=0.232  Sum_probs=115.5

Q ss_pred             CCCCceEEEEeeeCCC-CCC-eeEEEeCCEEccC--------CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS--------GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~--------~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      +.+|+.++|.|.+.|. |.| .|.|+|++..+..        .+++.+  .+.|.|.+++.+| |.|+|.|.|..|....
T Consensus       131 ~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~  207 (434)
T 1igy_B          131 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSPRPS-ETVTCNVAHPASSTKV  207 (434)
T ss_dssp             CCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEE--EEEEEEETTTTTS-SCCEEEEECTTTTCCE
T ss_pred             cCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEE--EEEEEEcchhcCC-CcEEEEEEeCCCCccc
Confidence            3589999999999987 777 9999999976421        122221  2459999999999 9999999999987554


Q ss_pred             eEEEEEEe------------CCceeeeCCCceE-EecCCcEEEEEEecccCC--cceeEEEeeCCEEeccccCCc---cC
Q psy12061         72 KGRLIVLH------------GPSYYEQLPPKIT-IAAHRNLQLRCSAHTEEL--LDVAYIWTHNGVRIGNMDLNE---LE  133 (626)
Q Consensus        72 ~~~l~v~~------------~p~~~~~~~~~~~-v~~g~~~~l~C~~~~~p~--p~~~i~W~~~~~~~~~~~~~~---~~  133 (626)
                      ...+.+..            .|.+...+|.... +.+|++++|.|.+.+.++  +.+.|.|+|++..+.......   ..
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~  287 (434)
T 1igy_B          208 DKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQF  287 (434)
T ss_dssp             EEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCC
T ss_pred             eeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCC
Confidence            44443321            1444444444332 789999999999998853  345779999998775321100   00


Q ss_pred             CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        134 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       134 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ...+ ...+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       288 ~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          288 NSTF-RVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             SSSC-CCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             CCcE-EEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            1111 134579999999999999999999998865

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.77  E-value=9.6e-19  Score=156.94  Aligned_cols=157  Identities=20%  Similarity=0.185  Sum_probs=104.1

Q ss_pred             ceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEE
Q psy12061        422 RGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH  501 (626)
Q Consensus       422 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~  501 (626)
                      ++.|.+|.|++...... ..  ........+.+++.+|.|++.|.|+|+|+|..|.|++|....+.+....|+.+|..+ 
T Consensus        19 ~~~Vt~Y~~~~~~~~~~-~~--~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~-   94 (232)
T 4go6_B           19 NVMVTHYFLPPDDAVPS-DD--DLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAI-   94 (232)
T ss_dssp             EEEECEEECCCC---------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEE-
T ss_pred             CEEEEEEEEEeeCCCCC-cE--EEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeee-
Confidence            36688898876332221 11  112233445689999999999999999999999999998888888776666666554 


Q ss_pred             EeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccc---------cee---------eecCccceEEecCCCC
Q psy12061        502 IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN---------DTI---------IPVGNTLDADIVDLSP  563 (626)
Q Consensus       502 ~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~---------~~~---------~~~~~~~~~~l~~L~p  563 (626)
                      ....+.+++.|+|+  +|.+.+|.|.+|.|+|+..+.......         ...         ........+.+.+|.+
T Consensus        95 ~~~~~~~sv~l~W~--~P~~~~G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  172 (232)
T 4go6_B           95 KISKSPDGAHLTWE--PPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTT  172 (232)
T ss_dssp             EEEEETTEEEEEEE--CCSCCSSCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESS
T ss_pred             EEecCCCEEEEEEe--CCCCCCCceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCcc
Confidence            45567889999999  677788999999998876544311100         000         1111222334568999


Q ss_pred             CceEEEEEEEEecCCCCCCCC
Q psy12061        564 GKRYHMRVLAFSNGGDGRMSS  584 (626)
Q Consensus       564 ~~~Y~~~V~a~~~~G~g~~s~  584 (626)
                      ++.|.|+|+|+|.+|.|++|+
T Consensus       173 ~t~Y~frV~A~N~~G~Gp~S~  193 (232)
T 4go6_B          173 KPAIIFRIAARNEKGYGPATQ  193 (232)
T ss_dssp             SEEEEEEEEEECSSCBCCCEE
T ss_pred             CCceEEEEEEECCCcCCCCcc
Confidence            999999999999999999884

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.77  E-value=4.2e-19  Score=157.29  Aligned_cols=160  Identities=18%  Similarity=0.246  Sum_probs=105.3

Q ss_pred             CCCceEEEEeeeCCCCC----CeeEEEeCCEEccCC--CcEEEccCCcEEEcc---CCC---CCCEEEEEEEEcCCCCce
Q psy12061          3 GEGGNVTIFCNPEAAPK----PKFVWKKDGNIIGSG--GRRKIFENGNLLISP---VSR---DDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~----p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~---v~~---~d~G~Y~C~a~n~~g~~~   70 (626)
                      .+|++++|.|.+.|.|+    +.|.|+|+|.++...  .......+|.|.|.+   +..   +|+|.|+|.|.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            58999999999998753    499999999888643  223345567665543   334   459999999999887653


Q ss_pred             eeEEE----EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCC----
Q psy12061         71 SKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG----  142 (626)
Q Consensus        71 ~~~~l----~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~----  142 (626)
                      ....+    .+..+|.+...++.... ..|..++|.|.+.+.+++.++|.|+|||..+.....    .......++    
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~----~~~~~~~~gt~~~  170 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT----TPPVLDSDGSFFL  170 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE----CCCEECTTSCEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccc----cCceECCCCCEEE
Confidence            33333    23345655444443322 346669999999996555567899999998864210    001112233    


Q ss_pred             --eEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        143 --LLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       143 --~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                        .|.|......|.|.|+|.|.|....
T Consensus       171 ~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          171 YSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence              3445554446799999999997653

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.77  E-value=3.4e-18  Score=152.98  Aligned_cols=165  Identities=16%  Similarity=0.267  Sum_probs=115.1

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--E---Ecc--------------CCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--N---IIG--------------SGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~i~--------------~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.|  .+.|.|+|..  .   .+.              ..+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   91 (220)
T 2fbj_H           12 VQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDT   91 (220)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhC
Confidence            57899999999999876  5799999842  1   110              1367777643     2799999999999


Q ss_pred             EEEEEEEEcCCCC---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccc
Q psy12061         56 GIYSCTATNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNM  127 (626)
Q Consensus        56 G~Y~C~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~  127 (626)
                      |.|.|.+.|..+.   ....+.|.|..    +|.+...+  ...+..|+.++|.|.+.+. |...+.+.|++++..+...
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~  169 (220)
T 2fbj_H           92 ALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV  169 (220)
T ss_dssp             EEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE
T ss_pred             EEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceE
Confidence            9999999987653   23446888864    23333322  2335789999999999987 4413578999998775211


Q ss_pred             cCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceE
Q psy12061        128 DLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS  169 (626)
Q Consensus       128 ~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~  169 (626)
                      ....  .....+. ..+.|.|......|.|.|+|.|.|..|...
T Consensus       170 ~~~~~~~~~g~~~-~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          170 NFPPALASGGRYT-MSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             ECCCEECSSSCEE-EEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecCceECCCCCEE-EEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            1000  0111111 123588988888999999999999998754

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.77  E-value=1.6e-18  Score=158.82  Aligned_cols=177  Identities=15%  Similarity=0.270  Sum_probs=116.4

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--E---Ec--------------cCCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--N---II--------------GSGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~---~i--------------~~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  +.+.+.|+|..  .   .+              ...+|+.+..++     +|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   91 (253)
T 3liz_H           12 VQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDT   91 (253)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhC
Confidence            5789999999999873  35689999832  1   11              012566665443     399999999999


Q ss_pred             EEEEEEEEcCC----CCceeeEEEEEE----eCCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEecc
Q psy12061         56 GIYSCTATNVH----GMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        56 G~Y~C~a~n~~----g~~~~~~~l~v~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~  126 (626)
                      |.|.|.+.|..    +.....+.|.|.    .+|.+... +....+..|+.++|.|.+.+ .|. .+.+.|++++..+..
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~~~~~~~~~  169 (253)
T 3liz_H           92 AMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPE-PVTVTWNSGSLSSGV  169 (253)
T ss_dssp             EEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE-CC------CCEEEEEEEEEEEBSS-CCEEEEGGGTBCTTE
T ss_pred             EEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe-cCCcccCCCCcEEEEEEEeeEeCC-CeEEEEEeCCeecce
Confidence            99999999863    223445678886    24444433 33445668999999999998 554 357899999874321


Q ss_pred             ccCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCCC
Q psy12061        127 MDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL  182 (626)
Q Consensus       127 ~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~  182 (626)
                      ..... .....+. ..+.|.|......| |.|+|.|.|..+.......+.+..+|.+
T Consensus       170 ~~~~~~~~~g~~~-~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~~~~~~  224 (253)
T 3liz_H          170 HTFPAVLQSDLYT-LSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPRDCGCK  224 (253)
T ss_dssp             EECCCEEETTEEE-EEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC-----
T ss_pred             EeCCccccCCeEE-EEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCcccCCC
Confidence            11000 0012222 22679999999999 9999999999998877777776643333

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.77  E-value=3.5e-18  Score=158.16  Aligned_cols=163  Identities=15%  Similarity=0.203  Sum_probs=110.5

Q ss_pred             CCCCceEEEEeeeCCCC-----CCeeEEEeCC--EE---cc---------CCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-----KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~~---i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++++|.|.+.+.|     .+.|.|+|+.  ..   +.         ..+|+.+..++   +|.|.+++.+|+|.|.
T Consensus        27 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~  106 (268)
T 1x9q_A           27 VSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYF  106 (268)
T ss_dssp             CCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEEEE
Confidence            67999999999999987     4799999842  21   11         24566665332   6999999999999999


Q ss_pred             EEEEcCCCC-ceeeEEEEEEeCCc----------------------eeeeCCCceEEecCCcEEEEEEecccCCcceeEE
Q psy12061         60 CTATNVHGM-DESKGRLIVLHGPS----------------------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI  116 (626)
Q Consensus        60 C~a~n~~g~-~~~~~~l~v~~~p~----------------------~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~  116 (626)
                      |.|.|..+. ....+.|.|...+.                      +....|....+.+|++++|.|.+.+.+.....+.
T Consensus       107 C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  186 (268)
T 1x9q_A          107 CSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMN  186 (268)
T ss_dssp             EEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEE
T ss_pred             EEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEE
Confidence            999988654 23446777765321                      1122345678999999999999998765345679


Q ss_pred             EeeC--CEEeccc-cC-----------CccCCCeeEec------CCeEEEeecCCCCCEeEEEEEEeC
Q psy12061        117 WTHN--GVRIGNM-DL-----------NELETPNINID------GGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus       117 W~~~--~~~~~~~-~~-----------~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      |+|+  +..+..- ..           ......++...      ...|.|.+++.+|+|.|+|.+.+.
T Consensus       187 W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          187 WVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            9985  3222100 00           00012344332      257999999999999999999874

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.77  E-value=1.7e-18  Score=158.55  Aligned_cols=163  Identities=15%  Similarity=0.227  Sum_probs=112.5

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc------c-----------CCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII------G-----------SGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i------~-----------~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.|  .+.|.|+|+.  ..+      .           ..+|+.+..+     .+|.|.+++.+|+
T Consensus        18 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   97 (261)
T 2xqy_G           18 VKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDS   97 (261)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccC
Confidence            57899999999999887  6899999863  211      1           1357777543     3799999999999


Q ss_pred             EEEEEEEEcCCCC---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEeccc
Q psy12061         56 GIYSCTATNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNM  127 (626)
Q Consensus        56 G~Y~C~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~  127 (626)
                      |.|.|.+.|..+.   ....+.|.|..    +|.+...+|. ..+..|+.++|.|.+.+. |.+ +.+.|++++..+...
T Consensus        98 G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~-i~v~W~k~g~~~~~~  175 (261)
T 2xqy_G           98 AVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVH  175 (261)
T ss_dssp             EEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSC-CEEEEGGGTCCTTEE
T ss_pred             eEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCC-CEEEEecCCCcCceE
Confidence            9999999986532   12346788864    3544443333 246789999999999985 543 578999998765321


Q ss_pred             cCCc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        128 DLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       128 ~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .... .....+ ...+.|.|..+...| |.|+|.|.|.....
T Consensus       176 ~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          176 TFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             ECCCEEETTEE-EEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             ecCceecCCcE-EEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            1000 001111 124579999988878 99999999976653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.76  E-value=2.3e-18  Score=160.20  Aligned_cols=181  Identities=15%  Similarity=0.249  Sum_probs=116.8

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--EEcc-----------------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--NIIG-----------------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~i~-----------------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  +.+.+.|+|..  ..+.                 ..+|+.+..++     +|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   91 (280)
T 3fku_X           12 KKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDT   91 (280)
T ss_dssp             ECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTC
T ss_pred             ECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhC
Confidence            5789999999999885  56799999832  1110                 12466666332     699999999999


Q ss_pred             EEEEEEEEcC---------CCCceeeEEEEEEe--------------CCceeeeCCCceEEecCCcEEEEEEecccCCcc
Q psy12061         56 GIYSCTATNV---------HGMDESKGRLIVLH--------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD  112 (626)
Q Consensus        56 G~Y~C~a~n~---------~g~~~~~~~l~v~~--------------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~  112 (626)
                      |.|.|.+.|.         .......+.|.|..              ++..+..+|. ..+.+|++++|.|.+.+.+.+.
T Consensus        92 G~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~  170 (280)
T 3fku_X           92 AVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGN  170 (280)
T ss_dssp             EECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCT
T ss_pred             EEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCC
Confidence            9999999987         12233456777765              2444555555 8999999999999999833222


Q ss_pred             eeEEEeeC--CEEeccc-----cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCc---eEEEEEEEEeC
Q psy12061        113 VAYIWTHN--GVRIGNM-----DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGK---ISTKTTVIVEG  178 (626)
Q Consensus       113 ~~i~W~~~--~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~---~~~~~~l~v~~  178 (626)
                      ..+.|+|.  +..+..-     ........|+..    ....|.|.+++.+|+|.|+|.+.|..+.   ....+.|.|..
T Consensus       171 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~  250 (280)
T 3fku_X          171 QGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLG  250 (280)
T ss_dssp             TCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC-
T ss_pred             ceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEEEEECC
Confidence            35689873  3222110     000000122222    1235999999999999999999987632   34455777766


Q ss_pred             CCCCC
Q psy12061        179 PPGLP  183 (626)
Q Consensus       179 ~P~~p  183 (626)
                      .|..+
T Consensus       251 ~~~~~  255 (280)
T 3fku_X          251 QPKAA  255 (280)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            55433

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.76  E-value=1.6e-17  Score=167.76  Aligned_cols=171  Identities=13%  Similarity=0.149  Sum_probs=112.3

Q ss_pred             CCCceEEEEeeeCCC-CC-C-eeEEEeCCEEccCCCcEEE--ccCC------cEEEccCCCCCCEEEEEEEEcCCCCc-e
Q psy12061          3 GEGGNVTIFCNPEAA-PK-P-KFVWKKDGNIIGSGGRRKI--FENG------NLLISPVSRDDSGIYSCTATNVHGMD-E   70 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~-p-~i~W~~~~~~i~~~~~~~~--~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~-~   70 (626)
                      .+|+.++|.|.+.|. |. | .|.|+|++..+.......+  ..+|      .|.|..+..+|+|.|+|.|.|..+.. .
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  218 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQD  218 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCcee
Confidence            479999999999997 66 5 9999999864321100011  1222      48899999999999999999998742 1


Q ss_pred             eeEEEEEE------------------eCCceeeeCCCceEEecCCcEEEEEEecccCC-cceeEEEeeCCEEeccccCCc
Q psy12061         71 SKGRLIVL------------------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        71 ~~~~l~v~------------------~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      ....+.|.                  .+|.+...+|....+.+|++++|.|.+.+.++ ..+.|.|  ++..+.......
T Consensus       219 ~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~  296 (475)
T 1iga_A          219 VTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGP  296 (475)
T ss_pred             eeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccC
Confidence            22232221                  23444344455555689999999999998744 1257899  444433211000


Q ss_pred             ---cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        132 ---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       132 ---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                         ...+.+ ...+.|.|.+++.+|+|.|+|.|.|..|.......|.+
T Consensus       297 ~~~~~~g~~-~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~  343 (475)
T 1iga_A          297 PERDLCGCY-SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSK  343 (475)
T ss_pred             ceECCCCCE-EEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeec
Confidence               001111 13457999999999999999999999998655555543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.76  E-value=1.2e-17  Score=149.80  Aligned_cols=164  Identities=14%  Similarity=0.238  Sum_probs=113.9

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEE---c---c-------------CCCcEEEccCC-----cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I---G-------------SGGRRKIFENG-----NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~---i---~-------------~~~~~~~~~~g-----~L~i~~v~~~   53 (626)
                      |.+|++|+|.|.+.+.+  .+.|.|+|.  +..   +   .             ..+|+.+..++     +|.|.+++.+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   91 (221)
T 3m8o_H           12 VQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSD   91 (221)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHH
Confidence            57899999999998754  579999973  211   1   0             13677776543     5999999999


Q ss_pred             CCEEEEEEEEcCC--CCceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEecc
Q psy12061         54 DSGIYSCTATNVH--GMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        54 d~G~Y~C~a~n~~--g~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~  126 (626)
                      |+|.|.|.+.+..  ......+.|.|..    +|.+....+...  ..|+.++|.|.+.+ .|...+.+.|+++|..+..
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~  169 (221)
T 3m8o_H           92 DTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTA  169 (221)
T ss_dssp             GCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEE
T ss_pred             HCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEECce
Confidence            9999999999874  2334456777752    344432333333  78999999999998 5541357899999987742


Q ss_pred             ccCCc---cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        127 MDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       127 ~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      .....   .....+.. .+.|.|......|.|.|+|.|.+..+..
T Consensus       170 ~~~~~~~~~~~~~~~~-~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          170 RNFPPSQDASGDLYTT-SSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EECCCEECSSSSCEEE-EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEcCceeeCCCCcEEE-EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            21100   01122222 2469999999999999999999987654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.75  E-value=2.7e-18  Score=158.21  Aligned_cols=178  Identities=17%  Similarity=0.268  Sum_probs=111.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEE---cc--C------------CCcEEEc-----cCCcEEEccCCCCCCEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---IG--S------------GGRRKIF-----ENGNLLISPVSRDDSGI   57 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---i~--~------------~~~~~~~-----~~g~L~i~~v~~~d~G~   57 (626)
                      |.+|++|+|.|.+.+.|.+.|.|+|.  +..   +.  .            .+|....     .+.+|.|.+++.+|+|.
T Consensus        14 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~   93 (259)
T 3omz_A           14 RQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGV   93 (259)
T ss_dssp             EETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEE
T ss_pred             ecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEE
Confidence            56899999999999999999999982  211   10  0            0122221     12369999999999999


Q ss_pred             EEEEEEcCCCC---ceeeEEEEEEeC----------------CceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEE
Q psy12061         58 YSCTATNVHGM---DESKGRLIVLHG----------------PSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIW  117 (626)
Q Consensus        58 Y~C~a~n~~g~---~~~~~~l~v~~~----------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W  117 (626)
                      |.|.|.|..+.   ....+.|.|...                +..+...|....+.+|++++|.|.+.+. +.  ..+.|
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~~v~W  171 (259)
T 3omz_A           94 YYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWS--YYIFW  171 (259)
T ss_dssp             EEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSS--CEEEE
T ss_pred             EEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCC--ceEEE
Confidence            99999998762   344577888763                2344556778999999999999998875 44  36699


Q ss_pred             eeCC--EEeccc-----cCCccCCCeeEe------cCCeEEEeecCCCCCEeEEEEEEeCC---Cc--eEEEEEEEEeCC
Q psy12061        118 THNG--VRIGNM-----DLNELETPNINI------DGGLLEITNASFADAGEYECVVKSTV---GK--ISTKTTVIVEGP  179 (626)
Q Consensus       118 ~~~~--~~~~~~-----~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~C~a~n~~---g~--~~~~~~l~v~~~  179 (626)
                      +|.+  ..+...     ........++..      ....|.|.+++.+|+|.|+|.+.+..   +.  ......|.|...
T Consensus       172 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~  251 (259)
T 3omz_A          172 YKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTVEPR  251 (259)
T ss_dssp             EEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEECCCEEEEEEC-
T ss_pred             eeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEECCCCEEEEeeC
Confidence            9843  111100     000000123332      23569999999999999999998532   21  233456666654


Q ss_pred             CC
Q psy12061        180 PG  181 (626)
Q Consensus       180 P~  181 (626)
                      +.
T Consensus       252 ~~  253 (259)
T 3omz_A          252 SQ  253 (259)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.75  E-value=7.2e-19  Score=158.72  Aligned_cols=161  Identities=17%  Similarity=0.245  Sum_probs=107.8

Q ss_pred             CCCCceEEEEeeeCCC---CCC-eeEEEeCCEEccCCC--cEEEccC------CcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAA---PKP-KFVWKKDGNIIGSGG--RRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p-~i~W~~~~~~i~~~~--~~~~~~~------g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.|.   |.+ .|.|+|++..+....  ......+      .+|.|.+++.+|+|.|+|.|.|..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            5689999999999887   777 999999887664211  0111122      369999999999999999999998864


Q ss_pred             eeeEEE----EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCe--
Q psy12061         70 ESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--  143 (626)
Q Consensus        70 ~~~~~l----~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--  143 (626)
                      .....+    .+..+|.+...++... ...|+.++|.|.+.+.+++.++|.|+|||..+.....    .......++.  
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~----~~~~~~~dgt~~  183 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN----TPPTMDTDGSYF  183 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE----CCCEECTTSCEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee----cCceECCCCCEE
Confidence            332222    2334565544433322 2358899999999996555578899999998854311    0011123333  


Q ss_pred             ----EEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        144 ----LEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       144 ----l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                          |.|......|.|.|+|.|.|....
T Consensus       184 ~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          184 LYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence                444443334699999999997654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.75  E-value=5e-18  Score=158.85  Aligned_cols=179  Identities=13%  Similarity=0.183  Sum_probs=119.8

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc-----------------cCCCcEEEcc-----CCcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII-----------------GSGGRRKIFE-----NGNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~~-----~g~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.+.+.|  .+.|.|+|+.  ..+                 ...+|+.+..     +.+|.|.+++.+|+
T Consensus        34 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds  113 (291)
T 2gki_A           34 VKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDS  113 (291)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHC
Confidence            57899999999999887  5799999942  211                 0125555543     23699999999999


Q ss_pred             EEEEEEEEcCC-CC----ceeeEEEEEEeC---------------CceeeeCCCceEEecCCcEEEEEEecccCCcc---
Q psy12061         56 GIYSCTATNVH-GM----DESKGRLIVLHG---------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLD---  112 (626)
Q Consensus        56 G~Y~C~a~n~~-g~----~~~~~~l~v~~~---------------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~---  112 (626)
                      |.|.|.+.|.. |.    ....+.|.|..+               +..+...|..+.+.+|++++|.|.+.+.+.+.   
T Consensus       114 G~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  193 (291)
T 2gki_A          114 AVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTR  193 (291)
T ss_dssp             EEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTT
T ss_pred             EEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcccccccc
Confidence            99999999875 21    123457777651               33455567788999999999999999887652   


Q ss_pred             -eeEEEeeCC--EEec---ccc--CCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCC
Q psy12061        113 -VAYIWTHNG--VRIG---NMD--LNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGP  179 (626)
Q Consensus       113 -~~i~W~~~~--~~~~---~~~--~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~  179 (626)
                       ..+.|+|++  ....   ...  .......++..    ....|.|.+++.+|+|.|+|.|.|..... .....|.|...
T Consensus       194 ~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~  273 (291)
T 2gki_A          194 KNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHH  273 (291)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             ceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence             257999963  2111   000  00000123322    22479999999999999999999864322 23445666554


Q ss_pred             C
Q psy12061        180 P  180 (626)
Q Consensus       180 P  180 (626)
                      +
T Consensus       274 ~  274 (291)
T 2gki_A          274 H  274 (291)
T ss_dssp             -
T ss_pred             E
Confidence            4

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=5.7e-18  Score=153.98  Aligned_cols=172  Identities=15%  Similarity=0.200  Sum_probs=114.9

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--EE---cc--------------CCCcEEEcc-----CCcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--NI---IG--------------SGGRRKIFE-----NGNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~---i~--------------~~~~~~~~~-----~g~L~i~~v~~~d~   55 (626)
                      +.+|++|+|.|.+.+.  +.+.|.|+|+.  ..   +.              ..+|+.+..     +.+|.|.+++.+|+
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   92 (242)
T 1hxm_B           13 KTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDI   92 (242)
T ss_dssp             EETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccC
Confidence            5689999999999885  66799999842  21   10              346777653     23699999999999


Q ss_pred             EEEEEEEEcCCC-C------ceeeEEEEEEeC-------CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC
Q psy12061         56 GIYSCTATNVHG-M------DESKGRLIVLHG-------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG  121 (626)
Q Consensus        56 G~Y~C~a~n~~g-~------~~~~~~l~v~~~-------p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~  121 (626)
                      |.|.|.+.+... .      ....+.|.|...       |......|....+..|+.++|.|.+.+..+..+.+.|++++
T Consensus        93 G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~  172 (242)
T 1hxm_B           93 ATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKK  172 (242)
T ss_dssp             EEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESS
T ss_pred             EEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCC
Confidence            999999998641 1      123468888753       32222224444456799999999999863323578999998


Q ss_pred             E-EeccccC--CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        122 V-RIGNMDL--NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       122 ~-~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      . .+.....  .......+. ..+.|.|..... + |.|+|.|.|..+.......+.+
T Consensus       173 ~~~l~~~~~~~~~~~~~~~~-~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          173 SNTILGSQEGNTMKTNDTYM-KFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             SCCCCCCEECCCEECSSSEE-EEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CEeecCccccceecCCCcEE-EEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            7 5532210  000111111 124688877764 4 9999999999987655555555

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.75  E-value=9e-19  Score=167.27  Aligned_cols=162  Identities=17%  Similarity=0.242  Sum_probs=110.8

Q ss_pred             CCCCceEEEEeeeCCC-CCC---eeEEEeCC-EEccCCCcEEE-c------cCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP---KFVWKKDG-NIIGSGGRRKI-F------ENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p---~i~W~~~~-~~i~~~~~~~~-~------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.|. |.|   .|.|+|++ ..+........ .      .+++|.|.+++.+|+|.|+|.|.|..+..
T Consensus       125 v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          125 LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR  204 (323)
T ss_dssp             HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             hccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC
Confidence            3579999999999886 566   99999964 55543222221 1      22369999999999999999999987543


Q ss_pred             eeeEEEEEE------eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc-----cCCCeeE
Q psy12061         70 ESKGRLIVL------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-----LETPNIN  138 (626)
Q Consensus        70 ~~~~~l~v~------~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~-----~~~~~~~  138 (626)
                      .  +.+.|.      .+|.+...++.... ..|+.++|.|.+.+.+++.+.|.|+|||..+.......     ...+.+ 
T Consensus       205 ~--~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~-  280 (323)
T 2wqr_A          205 A--LMRSTTKTSGPRAAPEVYAFATPEWP-GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGF-  280 (323)
T ss_dssp             C--EEEEECCCCSCCBCCEEEEEECCCCT-TCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSE-
T ss_pred             C--eeeEEEccCCCCCCCEEEEeCCChHH-hcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcE-
Confidence            2  233332      34544433332222 23999999999998655556789999999986532100     000111 


Q ss_pred             ecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        139 IDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       139 ~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       281 ~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          281 FVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            12347999999999999999999998876

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.75  E-value=1.7e-17  Score=149.56  Aligned_cols=173  Identities=14%  Similarity=0.243  Sum_probs=113.5

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--E---Ec-------------cCCCcEEEccC---C--cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--N---II-------------GSGGRRKIFEN---G--NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~i-------------~~~~~~~~~~~---g--~L~i~~v~~~d~G   56 (626)
                      |.+|++|+|.|.+.+.+  .+.|.|+|..  .   .+             ...+|+.+..+   +  +|.|.+++.+|+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   91 (232)
T 1dn0_B           12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTA   91 (232)
T ss_dssp             ECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCE
Confidence            57899999999998875  5799999842  2   11             01367776542   2  7999999999999


Q ss_pred             EEEEEEEcCC--CC----ceeeEEEEEEe----CCceeeeCCCceEEecC-CcEEEEEEeccc-CCcceeEEEee-CCEE
Q psy12061         57 IYSCTATNVH--GM----DESKGRLIVLH----GPSYYEQLPPKITIAAH-RNLQLRCSAHTE-ELLDVAYIWTH-NGVR  123 (626)
Q Consensus        57 ~Y~C~a~n~~--g~----~~~~~~l~v~~----~p~~~~~~~~~~~v~~g-~~~~l~C~~~~~-p~p~~~i~W~~-~~~~  123 (626)
                      .|.|.+.+..  +.    ....+.|.|..    +|.+....|.. .+..| +.++|.|.+.+. |.| +.+.|++ ||..
T Consensus        92 ~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p-~~v~W~~~~g~~  169 (232)
T 1dn0_B           92 VYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDS-ITFSWKYKNNSD  169 (232)
T ss_dssp             EEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSC-CEEEEEETTSCE
T ss_pred             EEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCC-eEEEEEcCCCCc
Confidence            9999998422  22    22356888865    24443322322 34578 999999999986 543 5789999 9988


Q ss_pred             ecccc-CCc-cCCCeeEecCCeEEEeecCC--CCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        124 IGNMD-LNE-LETPNINIDGGLLEITNASF--ADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       124 ~~~~~-~~~-~~~~~~~~~~~~l~i~~~~~--~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +.... ... .....+. ..+.|.|.....  .|.|.|+|.|.|..+.......+.+.
T Consensus       170 l~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          170 ISSTRGFPSVLRGGKYA-ATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             ECCEEECCCEEETTEEE-EEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             eeeEEECCccccCCcEE-EEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            75410 000 0012222 235788888876  78999999999999987666655543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.75  E-value=7.2e-16  Score=156.46  Aligned_cols=169  Identities=18%  Similarity=0.249  Sum_probs=109.4

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEeC--CEE---c-c------------CCCcEEEccC-----CcEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKKD--GNI---I-G------------SGGRRKIFEN-----GNLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~~--~~~---i-~------------~~~~~~~~~~-----g~L~i~~v~~~d   54 (626)
                      |.+|++++|.|.+.+.+.    +.|.|+|.  |..   | .            ..+|+.+..+     .+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   91 (512)
T 1zvo_C           12 VKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAAD   91 (512)
T ss_pred             EcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCHHH
Confidence            578999999999987643    68999985  321   1 0            1357776542     369999999999


Q ss_pred             CEEEEEEEEcCCC----------C---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEE
Q psy12061         55 SGIYSCTATNVHG----------M---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW  117 (626)
Q Consensus        55 ~G~Y~C~a~n~~g----------~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W  117 (626)
                      +|.|.|.+.+..+          .   ....+.|.|..    +|.+....+.......|+.++|.|.+.+..+..+++.|
T Consensus        92 sg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p~~v~W  171 (512)
T 1zvo_C           92 TAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTW  171 (512)
T ss_pred             CEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCceEEEE
Confidence            9999999998753          1   12446788864    34333222222212346899999999987332357799


Q ss_pred             eeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061        118 THNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       118 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      ++++..........  ...+.+. ..+.|.|...... .|.|+|.|.|..|.....+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          172 YMGTQSQPQRTFPEIQRRDSYYM-TSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             EcCcccCceEecCceecCCCCEE-EEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence            99764321110000  0011111 1245888887776 8999999999998765544

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=6.6e-18  Score=135.57  Aligned_cols=120  Identities=23%  Similarity=0.286  Sum_probs=100.8

Q ss_pred             EEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI  547 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~  547 (626)
                      +|+|.|..|.|+.|..+.++|.+..|+.+|.++++...+.+++.|+|++|.....++.|.+|.|+|+..+...    ...
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~----~~~   78 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRG----EME   78 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSC----CEE
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCc----ceE
Confidence            5789999999999999999999999988899999999999999999995333337899999999988765442    223


Q ss_pred             eecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       548 ~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      ......+.+.|.+|.|++.|.|+|+|+|..|.|++|+++ .++|.
T Consensus        79 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~  122 (124)
T 2ed9_A           79 TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY-TAETP  122 (124)
T ss_dssp             EECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCE-EEECC
T ss_pred             EecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE-EEECC
Confidence            356778899999999999999999999999999999764 46554

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.75  E-value=4.2e-18  Score=158.01  Aligned_cols=164  Identities=20%  Similarity=0.266  Sum_probs=112.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE------------ccCC---C-cEEEcc----CCcEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI------------IGSG---G-RRKIFE----NGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~------------i~~~---~-~~~~~~----~g~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++++|.|.+.+ +.+.|.|+|  .+..            ....   + |+.+..    +.+|.|.+++.+|+|.|.
T Consensus        39 v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~  117 (270)
T 3qib_D           39 KGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYL  117 (270)
T ss_dssp             EETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEE
T ss_pred             EcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEE
Confidence            568999999999976 778999998  2211            1001   1 666553    337999999999999999


Q ss_pred             EEEEcCCC----CceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC
Q psy12061         60 CTATNVHG----MDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL  129 (626)
Q Consensus        60 C~a~n~~g----~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~  129 (626)
                      |.+.+..+    .....+.|.|..      +|.+...++....+..|+.++|.|.+.+.+++.+.+.|+|||..+.....
T Consensus       118 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  197 (270)
T 3qib_D          118 CASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVC  197 (270)
T ss_dssp             EEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred             EEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcc
Confidence            99997432    233446788876      45544444555556679999999999994433457899999999865321


Q ss_pred             Cc---------cCCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCCc
Q psy12061        130 NE---------LETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGK  167 (626)
Q Consensus       130 ~~---------~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~  167 (626)
                      ..         .....+. ....|.|......| .|.|+|.+.|....
T Consensus       198 ~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          198 TDPQPLKEQPALNDSRYA-LSSRLRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             ECSSCEESCTTSSSCCEE-EEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             cccccccccccCCCCCEE-EEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence            00         0111111 22457888877777 99999999987654

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.75  E-value=1.3e-16  Score=139.24  Aligned_cols=180  Identities=17%  Similarity=0.176  Sum_probs=129.0

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|+++++...+.. ..|.|+++...+    +.+ .|.|+|...+  .+..  .........+.|.+|.+++.|.++|+|.
T Consensus         4 ~P~nv~~~s~n~~-~iL~W~pp~~~~----~~v-~Y~V~y~~~~--~w~~--~c~~~~~~~c~lt~l~~~~~Y~~rV~A~   73 (201)
T 3lqm_A            4 PPENVRMNSVNFK-NILQWESPAFAK----GQL-TFTAQYLSYR--IFQD--KCMQTTLTECDFSSLSKYGDHTLRVRAE   73 (201)
T ss_dssp             CCEEEEEEEETTE-EEEEEECCCCSS----SCC-EEEEEEEETT--EEEE--EEEEESSSEEECTTSCSSSCEEEEEEEE
T ss_pred             CCcccEEEEECCc-eEEEECCCCCCC----CCe-EEEEEEEECC--Cccc--CcCccCCCEEECCCCccCCCEEEEEEEe
Confidence            7899999876654 679999987644    334 4999997652  2221  2223345668899999999999999999


Q ss_pred             eCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCC-C---------ceeeEEEEEEEeccCCcc
Q psy12061        473 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE-E---------PIIGYKVRVWEVDQDMSR  542 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~-~---------~i~~Y~i~~~~~~~~~~~  542 (626)
                      +..|.|+++.. .|........+|| .+.+. ...+++.|.|.+  |...+ +         .+..|.|.|+..+.... 
T Consensus        74 ~~~~~S~~s~~-~f~~~~~t~~~PP-~v~~~-~~~~si~v~w~~--P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~-  147 (201)
T 3lqm_A           74 FADEHSDWVQI-TFSPVDDTIIGPP-GMQVE-VLADCLHMRFLA--PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEK-  147 (201)
T ss_dssp             ETTEECCCEEE-EECHHHHSBCCCC-EEEEE-EETTEEEEEEEC--CEEECSSCEEEHHHHCTTCEEEEEEEETTCCCC-
T ss_pred             cCCCcCcceee-eeeecccCeeCCC-EEEEE-EeCCEEEEEEcC--CCccCCCcccCHHHhCCceEEEEEEEECCCCcE-
Confidence            99888888754 4433222334566 67775 456899999995  43222 3         36799999988654321 


Q ss_pred             ccceeeecCccceEEecCCCCCceEEEEEEEEec--CCCCCCCCCcEEEeecc
Q psy12061        543 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN--GGDGRMSSPAITFQMGE  593 (626)
Q Consensus       543 ~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~--~G~g~~s~~~~~~~~~~  593 (626)
                          .........+.|.+|+|++.|.|+|+|.+.  .|.|.+|.+ .++++.+
T Consensus       148 ----~~~~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~-~c~~T~~  195 (201)
T 3lqm_A          148 ----FQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEP-VCEQTTH  195 (201)
T ss_dssp             ----EEECCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCC-EEEECCC
T ss_pred             ----EEEEecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCC-EeEEeCC
Confidence                123346678999999999999999999997  689999965 5677664

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.74  E-value=2.6e-18  Score=132.53  Aligned_cols=80  Identities=28%  Similarity=0.538  Sum_probs=73.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|+|.|+|||.+|..+.|+.+..++   +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        25 v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           25 VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEE
Confidence            578999999999999999999999999999988898887665   69999999999999999999999999999999997


Q ss_pred             eCC
Q psy12061         79 HGP   81 (626)
Q Consensus        79 ~~p   81 (626)
                      .+|
T Consensus       105 ~pP  107 (107)
T 3knb_B          105 EPP  107 (107)
T ss_dssp             C--
T ss_pred             cCC
Confidence            665

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.74  E-value=1.3e-17  Score=148.58  Aligned_cols=162  Identities=16%  Similarity=0.284  Sum_probs=108.9

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EEc----------------cCCCcEEEccC-----CcEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII----------------GSGGRRKIFEN-----GNLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~i----------------~~~~~~~~~~~-----g~L~i~~v~~~d~G   56 (626)
                      +.+|++|+|.|.+.+.|  .+.|.|+|+.  ..+                ...+|+.+..+     .+|.|.+++.+|+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   91 (215)
T 1c5d_H           12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTA   91 (215)
T ss_dssp             ECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             ecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCE
Confidence            57899999999999875  4799999852  211                01357776532     27999999999999


Q ss_pred             EEEEEEEcCCCC---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEeeCCEEecccc
Q psy12061         57 IYSCTATNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMD  128 (626)
Q Consensus        57 ~Y~C~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~  128 (626)
                      .|.|.+.|..+.   ....+.|.|..    +|.+...+|. ..+..|+.++|.|.+.+. |.| +.+.|+++|..+....
T Consensus        92 ~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~  169 (215)
T 1c5d_H           92 IYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEP-VTVTWNSGALSSDVHT  169 (215)
T ss_dssp             EEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSC-CEEEEGGGTTCCSCCB
T ss_pred             EEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCC-cEEEEccCCccCceEe
Confidence            999999987532   23447888863    3444443333 235789999999999987 654 4779999987643211


Q ss_pred             CCccCCCeeEecCCeEE----EeecCCCCCEeEEEEEEeCCCceEEEE
Q psy12061        129 LNELETPNINIDGGLLE----ITNASFADAGEYECVVKSTVGKISTKT  172 (626)
Q Consensus       129 ~~~~~~~~~~~~~~~l~----i~~~~~~d~g~Y~C~a~n~~g~~~~~~  172 (626)
                      .     .... ..+.+.    +......| |.|+|.|.|..|......
T Consensus       170 ~-----~~~~-~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          170 F-----PAVL-QSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             C-----CCEE-ETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             c-----Cccc-CCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence            0     1111 112221    23444356 999999999988754433

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.73  E-value=7.2e-18  Score=151.25  Aligned_cols=169  Identities=15%  Similarity=0.140  Sum_probs=106.3

Q ss_pred             CcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCC
Q psy12061        315 KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAP  394 (626)
Q Consensus       315 ~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p  394 (626)
                      ..+..+.+|.|+++......+....     ......+++.+|.|++.|.|||+|.|..|.|.+|....+.+....|+.+|
T Consensus        17 ~~~~~Vt~Y~~~~~~~~~~~~~~~~-----~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~   91 (232)
T 4go6_B           17 GTNVMVTHYFLPPDDAVPSDDDLGT-----VPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAP   91 (232)
T ss_dssp             SSEEEECEEECCCC-----------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCC
T ss_pred             CCCEEEEEEEEEeeCCCCCcEEEEE-----CCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCC
Confidence            3455677888877544322222111     11334677899999999999999999999999999988888766666455


Q ss_pred             CceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce----------EEEE--ecCc-------cceEE
Q psy12061        395 QGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA----------VYYL--SRTT-------RNWAL  455 (626)
Q Consensus       395 ~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~----------~~~~--~~~~-------~~~~~  455 (626)
                      . +.....+.+++.|+|++|...+    |.|.+|.|+|+.........          ....  ....       ...+.
T Consensus        92 ~-~~~~~~~~~sv~l~W~~P~~~~----G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (232)
T 4go6_B           92 C-AIKISKSPDGAHLTWEPPSVTS----GKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNA  166 (232)
T ss_dssp             E-EEEEEEETTEEEEEEECCSCCS----SCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTB
T ss_pred             e-eeEEecCCCEEEEEEeCCCCCC----CceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEe
Confidence            4 4445578899999999987543    78999999997655432111          0000  0111       11223


Q ss_pred             EeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCC
Q psy12061        456 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP  493 (626)
Q Consensus       456 i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p  493 (626)
                      +.+|.+++.|.|+|+|.|..|.|++|+...+.+....|
T Consensus       167 ~~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~~~p  204 (232)
T 4go6_B          167 HIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDS  204 (232)
T ss_dssp             CBEESSSEEEEEEEEEECSSCBCCCEEEEEECC-----
T ss_pred             eecCccCCceEEEEEEECCCcCCCCcccEEeccCCCCC
Confidence            56899999999999999999999998765555444433

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.9e-17  Score=133.98  Aligned_cols=132  Identities=27%  Similarity=0.336  Sum_probs=108.1

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEE-ecCcc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL-SRTTR  451 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~  451 (626)
                      |.|.+|..+.++|.+..|..+|.++++...+.+++.|+|++|.....  +|.|.+|.|+|+..+.......... .....
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~--~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~   78 (134)
T 2edx_A            1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSR--NGVITQYSVAYEAVDGEDRGRHVVDGISREH   78 (134)
T ss_dssp             CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTC--SSCEEEEEEEEEESSSSCCCCEEECCCBTTC
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCC--CCceeEEEEEEEECCCCCcccEEEEeeCCCc
Confidence            67888998999999999987899999999999999999999843222  3779999999987765543322222 24556


Q ss_pred             ceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC
Q psy12061        452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN  506 (626)
Q Consensus       452 ~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~  506 (626)
                      ..+.|.+|+|++.|.|+|+|.|..|.|++|..+.++|.+..|+.+|.++++..++
T Consensus        79 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~s  133 (134)
T 2edx_A           79 SSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS  133 (134)
T ss_dssp             SEEEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECCCCSSCCCCCCCCCCCCC
T ss_pred             cEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecCCCCCCCCCceeEEEEcc
Confidence            7799999999999999999999999999999999999999987789998776543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.73  E-value=2.8e-18  Score=154.57  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=110.2

Q ss_pred             CCCceEEEEeeeCCC-CC-C-eeEEEeCCEEc-cCCCcEE-EccCC------cEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          3 GEGGNVTIFCNPEAA-PK-P-KFVWKKDGNII-GSGGRRK-IFENG------NLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~-p-~i~W~~~~~~i-~~~~~~~-~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      .+|++++|.|.+.|. |. | .|.|+|+|..+ ....... ...+|      +|.|.+++.+|+|.|+|.|.|..+..  
T Consensus        26 ~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~--  103 (231)
T 2w59_A           26 YISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL--  103 (231)
T ss_dssp             HTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS--
T ss_pred             ccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC--
Confidence            589999999999985 74 5 99999999887 4322222 22334      49999999999999999999987653  


Q ss_pred             eEEEEEE------eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc---c----------
Q psy12061         72 KGRLIVL------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---L----------  132 (626)
Q Consensus        72 ~~~l~v~------~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~---~----------  132 (626)
                      ...+.|.      .+|.+...++.... ..|..++|.|.+.+.+++.++|.|+|||..+.......   .          
T Consensus       104 ~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~  182 (231)
T 2w59_A          104 PLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAG  182 (231)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC--
T ss_pred             ceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccC
Confidence            3344442      34544433333222 23567999999999755556889999999986542100   0          


Q ss_pred             CC-CeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        133 ET-PNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       133 ~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .+ +.+ ...+.|.|......|.|.|+|.|.|....
T Consensus       183 ~d~gt~-~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          183 GDGDTF-FVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             -CCCCE-EEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             CCCCeE-EEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            00 011 11245778887778899999999998654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=155.52  Aligned_cols=166  Identities=17%  Similarity=0.235  Sum_probs=113.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EE---c-----------c---CCCcEEEccC----CcEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NI---I-----------G---SGGRRKIFEN----GNLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---i-----------~---~~~~~~~~~~----g~L~i~~v~~~d~G~Y   58 (626)
                      |.+|++|+|.|.+.+.|.+.|.|+|++  ..   +           .   ..+|+.+..+    .+|.|.+++.+|+|.|
T Consensus        36 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y  115 (279)
T 2wbj_D           36 SKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFY  115 (279)
T ss_dssp             EETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEEE
T ss_pred             ecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEEE
Confidence            568999999999998888999999953  11   1           0   1357777642    2799999999999999


Q ss_pred             EEEEEcCCC----C--ceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061         59 SCTATNVHG----M--DESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        59 ~C~a~n~~g----~--~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~  126 (626)
                      .|.|.|..+    .  ....+.|.|..      +|.+....|....+..|+.++|.|.+.+.+++.++|.|+|||..+..
T Consensus       116 ~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  195 (279)
T 2wbj_D          116 ICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  195 (279)
T ss_dssp             EEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCT
T ss_pred             EEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCC
Confidence            999999532    1  12346788865      34443333444445579999999999997554467899999998865


Q ss_pred             ccCCc---------cCCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCCce
Q psy12061        127 MDLNE---------LETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKI  168 (626)
Q Consensus       127 ~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g~~  168 (626)
                      .....         .....+. ..+.|.|......| .|.|+|.|.|.....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          196 GVSTDPQPLKEQPALNDSRYS-LSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             TEEECSSCEESSTTSTTCCEE-EEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             CcccccccccccccCCCCcEE-EEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            32100         0011111 12347777776654 778999999976543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.72  E-value=1.7e-17  Score=172.32  Aligned_cols=164  Identities=18%  Similarity=0.272  Sum_probs=120.2

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEcc------------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~------------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +.+|++++|.|.+ .+.|.+.|.|+|++..+.            ..+|..+..+++|.|.+++.+|+|.|+|.|.|..|.
T Consensus       378 ~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~  457 (581)
T 3o3u_N          378 ARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGK  457 (581)
T ss_dssp             EETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTTSC
T ss_pred             eecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCCCc
Confidence            4689999999999 888999999999876321            135777888889999999999999999999999998


Q ss_pred             c-eeeEEEEEEeCCceeeeCCCceEEecCCc-EEEEEEeccc-CCcceeEEEeeCCEEeccccCCccC--------CCee
Q psy12061         69 D-ESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELE--------TPNI  137 (626)
Q Consensus        69 ~-~~~~~l~v~~~p~~~~~~~~~~~v~~g~~-~~l~C~~~~~-p~p~~~i~W~~~~~~~~~~~~~~~~--------~~~~  137 (626)
                      . ...+.|.|..+|......+....+..|.. +.|.|.+.+. |.|  +|.|++||..+....-....        ....
T Consensus       458 ~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~  535 (581)
T 3o3u_N          458 ETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAG--TLSWHLDGKPLVPNEKGVSVKEQTRRHPETGL  535 (581)
T ss_dssp             EEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCC--EEEEEETTEECCTTSTTEEEEEEEEECTTTCC
T ss_pred             eeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCC--eEEEEECCEECCCCCCeEEEEeeeEEcCCCce
Confidence            7 67789999886654333333334556555 4679999984 766  56999999998753210000        0000


Q ss_pred             EecCCeEEEeecCCC-CCEeEEEEEEeCCCc
Q psy12061        138 NIDGGLLEITNASFA-DAGEYECVVKSTVGK  167 (626)
Q Consensus       138 ~~~~~~l~i~~~~~~-d~g~Y~C~a~n~~g~  167 (626)
                      -.-.+.|.|.+++.. +.|.|+|.|.|..+.
T Consensus       536 y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          536 FTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            111246999998844 488999999998653

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.72  E-value=9.8e-18  Score=152.72  Aligned_cols=163  Identities=16%  Similarity=0.276  Sum_probs=97.4

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeCC--EE---c--------------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKDG--NI---I--------------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---i--------------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.|  .+.|.|+|..  ..   |              ...+|+.+..+     .+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   91 (257)
T 3bn9_D           12 VKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDT   91 (257)
T ss_dssp             ECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGC
T ss_pred             EcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhC
Confidence            57899999999999876  6799999843  11   1              01357776542     2699999999999


Q ss_pred             EEEEEEEEcCCCC-------------ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEE
Q psy12061         56 GIYSCTATNVHGM-------------DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIW  117 (626)
Q Consensus        56 G~Y~C~a~n~~g~-------------~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W  117 (626)
                      |.|.|.+.|..|.             ....+.|.|..    +|.+....|. ..+..|+.++|.|.+.+. |.| +.|.|
T Consensus        92 G~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~-~~~~~g~~v~L~C~~~g~~P~p-i~v~W  169 (257)
T 3bn9_D           92 AVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEP-VTVSW  169 (257)
T ss_dssp             EEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSC-CEEEE
T ss_pred             EEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCc-ccccCCCcEEEEEEEeeEECCC-cEEEE
Confidence            9999999997651             11346888864    3444433333 346789999999999986 544 57899


Q ss_pred             eeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        118 THNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       118 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ++++..+.......  ...+.+. ..+.|.|.++...| |.|+|.|.|.....
T Consensus       170 ~k~g~~~~~~~~~~~~~~~g~y~-~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          170 NSGALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             TTTTCCSSCEECCCEECTTSCEE-EEEECCCC--------CEEEEEEEGGGTE
T ss_pred             eeCCCcCCcEecCCeEcCCCCEE-EEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            99987643211000  0011111 12457788877778 99999999976543

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=9.8e-17  Score=128.20  Aligned_cols=116  Identities=20%  Similarity=0.250  Sum_probs=92.8

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEe-eeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccc
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIK-GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL  554 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~-~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~  554 (626)
                      |.|++|..+.++|.+++|+.+|.++++. ..+.+++.|+|++|+....+|.|.+|.|+|+..+..... ........+.+
T Consensus         1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~   79 (124)
T 2dbj_A            1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISK-ELLEEVGQNGS   79 (124)
T ss_dssp             CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEE-EEEEEEESTTS
T ss_pred             CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCcc-ceEEEeCCCcc
Confidence            6788899999999999998899999988 578899999999654477899999999998654332111 11222346778


Q ss_pred             eEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       555 ~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      .+.|.+|.|++.|.|+|+|+|.+|.|++|.++ .+++.+
T Consensus        80 ~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~-~~~T~~  117 (124)
T 2dbj_A           80 RARISVQVHNATCTVRIAAVTRGGVGPFSDPV-KIFIPA  117 (124)
T ss_dssp             CEEEECCCSSSEEEECEEEEESSCBCCCCCCE-EEECCC
T ss_pred             eEEecCCCCCCEEEEEEEEECCCccCCCCCCE-EEEcCC
Confidence            99999999999999999999999999999764 466654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=152.51  Aligned_cols=164  Identities=16%  Similarity=0.189  Sum_probs=111.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEE---c-c-C----------CC-cEEEccCCc--EEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I-G-S----------GG-RRKIFENGN--LLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---i-~-~----------~~-~~~~~~~g~--L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++|+|.|.+.+.+.+.|.|+|.  +..   + . .          .+ |+.+..++.  |.|.+++.+|+|.|.|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (253)
T 3to4_D           13 VPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCT   92 (253)
T ss_dssp             EESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCEEEEEE
T ss_pred             EeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCeEEEEE
Confidence            56899999999999999999999982  111   1 0 0          12 666665544  99999999999999999


Q ss_pred             EEcCCC------CceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC
Q psy12061         62 ATNVHG------MDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL  129 (626)
Q Consensus        62 a~n~~g------~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~  129 (626)
                      +.+..+      .....+.|.|..      +|.+...++....+..|+.++|.|.+.+.+++.+.+.|+|||..+.....
T Consensus        93 ~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~  172 (253)
T 3to4_D           93 SSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVS  172 (253)
T ss_dssp             EECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred             EecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCcee
Confidence            997654      122345777763      34433333334344467999999999995444468899999999865321


Q ss_pred             Ccc---------CCCeeEecCCeEEEeecCCCC-CEeEEEEEEeCCC
Q psy12061        130 NEL---------ETPNINIDGGLLEITNASFAD-AGEYECVVKSTVG  166 (626)
Q Consensus       130 ~~~---------~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~a~n~~g  166 (626)
                      ...         ....+. -.+.|.|......| .|.|+|.|.+..-
T Consensus       173 ~~~~~~~~~~~~~~g~~~-~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          173 TDPQPLKEQPALNDSRYA-LSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             ECSSCEESSTTCTTCCEE-EEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             cccccccccccCCCCCEE-EEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            000         011111 12467788777777 7799999998643

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=129.48  Aligned_cols=118  Identities=25%  Similarity=0.293  Sum_probs=95.0

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|..+.++|.+..|+.+|.++++...+.+++.|+|++++..+.++.|.+|.|+|+..+................+.
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (134)
T 2edx_A            1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS   80 (134)
T ss_dssp             CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSE
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccE
Confidence            67889999999999999988899999998899999999995433778899999999988766543221111122567889


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +.|.+|.|++.|.|+|+|+|..|.|++|.++. +++...
T Consensus        81 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~-~~T~~~  118 (134)
T 2edx_A           81 WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVL-VRTDED  118 (134)
T ss_dssp             EEEESCCTTCEEEEEEEEEETTBCCCCCCCEE-EECCCC
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEE-eecCCC
Confidence            99999999999999999999999999997654 555543

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C

Probab=99.71  E-value=2e-14  Score=133.55  Aligned_cols=272  Identities=13%  Similarity=0.075  Sum_probs=170.6

Q ss_pred             CCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEE
Q psy12061        288 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ  367 (626)
Q Consensus       288 ~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~  367 (626)
                      ..||.++++...+...+.|+|++++..........|.+.|+..+...|.....        .......|..+  |.++|+
T Consensus        12 ~~pP~nl~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~~w~~~~t--------~~~~~~~L~~~--~~~rVr   81 (317)
T 3qt2_A           12 LLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRIT--------ESKAVTILHMG--FSASVR   81 (317)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCEEEEESSS--------EEEEECCCTTC--EEEEEE
T ss_pred             cCCCcceEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCcccEeecc--------ccccccccCCC--eEEEEE
Confidence            36899999987778999999999554443344678999999887777875433        12235567665  888888


Q ss_pred             EecCCCC-CCCCccEEEEc--cCCCCCCCCCceEEEeee-----------cceEEEEeeeccccccccceeeEEEEEEEE
Q psy12061        368 AINDVGP-GPESEVVTIFS--AEDMPQVAPQGVFSRGFN-----------STAINVTWNPIELIRENIRGRLIGHRIKYW  433 (626)
Q Consensus       368 a~n~~g~-~~~s~~~~~~t--~~~~p~~~p~~~~~~~~~-----------~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~  433 (626)
                      +....|. +.+|.++....  .++.|+..|.++.+...+           ...+..+|++......     -..|.+.|+
T Consensus        82 t~~~~~~s~~~S~w~~~~~~~~~G~p~~~p~nlsC~~~~~~~~~~~~~~~~~~l~CtW~pG~~~~~-----~t~Y~L~y~  156 (317)
T 3qt2_A           82 TILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPE-----DTQYFLYYR  156 (317)
T ss_dssp             EEEECSSCEEECCCEEEEECCCSCBGGGSCEEEEEEEEEEECSCSSSCCEEEEEEEEEECCTTCCT-----TCEEEEEEE
T ss_pred             EEECCCCCccccccccccccCCCCCCCCcceeeEEEEccccccccccccccceEEEEeeCCCCCCC-----CeeEEEEEE
Confidence            8776553 23455554332  335566688999988776           4789999998553221     236999987


Q ss_pred             ecCCCccceE-EEEecC-ccceEEEeCCc----cCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCC
Q psy12061        434 KEDNPEETAV-YYLSRT-TRNWALIVGLQ----PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINP  507 (626)
Q Consensus       434 ~~~~~~~~~~-~~~~~~-~~~~~~i~~L~----p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~  507 (626)
                      ..+.. .... ...... ......+....    ....|.|.|.+.+..+.-. +....+.....+.+.||.+|++... .
T Consensus       157 ~~~~~-~eC~~y~~~~~~~~~~C~f~~~~~~~~~~~~~~i~V~gss~~~~i~-s~~~~~~l~~iVkp~PP~nL~v~~~-~  233 (317)
T 3qt2_A          157 YGSWT-EECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIR-PFDQLFALHAIDQINPPLNVTAEIE-G  233 (317)
T ss_dssp             ETTEE-EECCCEEECTTSCEEEEEESSCSCCTTCCSEEEEEEEEECTTSCBC-CEEEEEEHHHHBCCCCCEEEEEEEE-T
T ss_pred             eCCCC-eeCCccccCCCcceeEEEeCCccccccCcEEEEEEEEcCCCCcccc-ccceEEEHHHcCcCCCCceeEEEEe-C
Confidence            65421 1111 112221 22345565543    2467888888765443311 2223455555566678999998854 5


Q ss_pred             CEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecC---CCCCCCC
Q psy12061        508 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNG---GDGRMSS  584 (626)
Q Consensus       508 ~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~---G~g~~s~  584 (626)
                      +.+.|+|++|.... ...-..|+|+|+.......   .....  ..+.+.+ +|.|++.|.|+|||....   +.|.+|+
T Consensus       234 ~~l~v~W~~P~~~~-~~~~L~Yevryr~~~~~~~---~~~~~--~~~~~~l-~l~p~~~Y~vqVR~k~~~~~~~~g~WSe  306 (317)
T 3qt2_A          234 TRMSIQWEKPVSAF-PIHCFDYEVKIHNTRNGYL---QIEKL--MTNAFIS-IIDDLSKYDVQVRAAVSSMCREAGLWSE  306 (317)
T ss_dssp             TEEEEEEECCSSSS-CGGGEEEEEEEEETTTCCE---EEEEE--SSSEEEE-ECCTTCCEEEEEEEEECTTTSSCCCCCC
T ss_pred             CcEEEEECCCCccc-ccCceEEEEEEEeCCCCcc---eEEEE--eeeEEEe-ecCCCCEEEEEEEEeecCCCCCCCCcCC
Confidence            79999999533222 2233579999987543321   11112  3355666 599999999999999653   3444443

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.70  E-value=7.9e-17  Score=126.49  Aligned_cols=110  Identities=26%  Similarity=0.348  Sum_probs=89.4

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|..+.++|.+++|..+|.++++.. +.+++.|+|++|+....||.|.+|+|.|+..+....     .....+.+.
T Consensus         1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~-----~~~~~~~~~   74 (117)
T 1wj3_A            1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV-----QVLNTNKTS   74 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC-----EEEEESSSE
T ss_pred             CcCCCCCCEEEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCC-----eEEeCCCcE
Confidence            67888999999999999998999998876 888999999965557889999999999987654321     222334567


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.+. |.+++.|.|+|+|+|.+|.|++|+++ .++|..
T Consensus        75 ~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v-~~~T~~  110 (117)
T 1wj3_A           75 AELV-LPIKEDYIIEVKATTDGGDGTSSEQI-RIPRIT  110 (117)
T ss_dssp             EEEE-CCCSSCEEEEEEEEESSCCCCBCCCE-EECCCC
T ss_pred             EEEE-CCCCCEEEEEEEEECCCccCCCCCCE-EEEcCC
Confidence            7787 99999999999999999999999764 455543

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.2e-16  Score=125.33  Aligned_cols=114  Identities=19%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|..+.++|.++.|+.+|.++++...+.+++.|+|+  +|..  +.|.+|.|+|+..+.... .........+.+.
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~--~p~~--g~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~   75 (119)
T 2ee2_A            1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWE--HVLE--KIVESYQIRYWAAHDKEE-AANRVQVTSQEYS   75 (119)
T ss_dssp             CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECC--CCSC--TTCCEEEEEEEESSSCGG-GCEEEEEETTCSE
T ss_pred             CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEec--CCCC--CccceEEEEEEECCCccc-CcEEEEcCCCEeE
Confidence            6788899999999999999889999999999999999999  4544  889999999987654321 1233445567789


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecccc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK  595 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~  595 (626)
                      +.|.+|.|++.|.|+|+|+|.+|.|++|+++ .+++...+
T Consensus        76 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~~~  114 (119)
T 2ee2_A           76 ARLENLLPDTQYFIEVGACNSAGCGPPSDMI-EAFTKKAS  114 (119)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSSCCCCCCCE-EEECCCCC
T ss_pred             EEECCCCCCCEEEEEEEEEcCCccCCCCCCE-EEECCCCC
Confidence            9999999999999999999999999999664 57666543

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.70  E-value=5.4e-17  Score=131.39  Aligned_cols=122  Identities=19%  Similarity=0.334  Sum_probs=100.2

Q ss_pred             EEEEeeCCCCCCCCc-cEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccce
Q psy12061        468 KVMAYNNAGEGPESE-RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT  546 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~-~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~  546 (626)
                      .|+|+|..|.|+.|. .+.++|.+..|. +|.++++...+.+++.|+|+  +|.+.++.|.+|.|+|+..+.... ....
T Consensus         2 sV~A~n~~G~g~~S~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~-~~~~   77 (130)
T 1wfo_A            2 SSGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIILAYQITHRLNTTTAN-TATV   77 (130)
T ss_dssp             CCCCCCCCCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECC--CCSCCCSCCCEEEEEEEESSCCCS-CCCE
T ss_pred             eeEEEecccCCCCCCCcEEEEcCCCCCC-CCCceEEEecCCCEEEEEEc--CCCCCCCceEEEEEEEEECCCCCc-eEEE
Confidence            378999999999987 478899988885 88899999999999999999  567788999999999887654321 1223


Q ss_pred             eeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       547 ~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      .....+.+.+.|.+|.|++.|.|+|+|+|..|.|++|.+ +.+++.+.
T Consensus        78 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~-~~~~T~~~  124 (130)
T 1wfo_A           78 EVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA-LVVTTEKR  124 (130)
T ss_dssp             EEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEE-EEECCSSC
T ss_pred             EEeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCccc-EEEecCCC
Confidence            356678899999999999999999999999999999854 44666543

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.70  E-value=7e-16  Score=134.58  Aligned_cols=182  Identities=15%  Similarity=0.181  Sum_probs=132.0

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.++.+.... ....|.|+++  ...++.+ .|.|+|+..  +.|...    ..+.....+.+.+|.++..|.+||+|
T Consensus         3 p~P~nv~~~s~n-~~~iL~W~pp--~~~~~~v-~Y~V~y~~~--~~w~~~----c~~~~~~~c~lt~l~~~~~Y~~rV~A   72 (201)
T 3lqm_A            3 PPPENVRMNSVN-FKNILQWESP--AFAKGQL-TFTAQYLSY--RIFQDK----CMQTTLTECDFSSLSKYGDHTLRVRA   72 (201)
T ss_dssp             CCCEEEEEEEET-TEEEEEEECC--CCSSSCC-EEEEEEEET--TEEEEE----EEEESSSEEECTTSCSSSCEEEEEEE
T ss_pred             CCCcccEEEEEC-CceEEEECCC--CCCCCCe-EEEEEEEEC--CCcccC----cCccCCCEEECCCCccCCCEEEEEEE
Confidence            478899987665 4567999983  3444444 599999986  356532    22334567889999999999999999


Q ss_pred             ecCCCCCCCCccEEEEcc-CCCCCCCCCceEEEeeecceEEEEeeeccccccccce---------eeEEEEEEEEecCCC
Q psy12061        369 INDVGPGPESEVVTIFSA-EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG---------RLIGHRIKYWKEDNP  438 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~-~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~---------~i~~Y~v~~~~~~~~  438 (626)
                      .+..|.|.++.. .+... ...+ ++| .+.+. ...++|.|.|.+|...+   +|         .+..|.|.||+.+..
T Consensus        73 ~~~~~~S~~s~~-~f~~~~~t~~-~PP-~v~~~-~~~~si~v~w~~P~~~~---~~~~~~~~~~~~~l~Y~v~y~~~~~~  145 (201)
T 3lqm_A           73 EFADEHSDWVQI-TFSPVDDTII-GPP-GMQVE-VLADCLHMRFLAPKIEN---EYETWTMKNVYNSWTYNVQYWKQGTD  145 (201)
T ss_dssp             EETTEECCCEEE-EECHHHHSBC-CCC-EEEEE-EETTEEEEEEECCEEEC---SSCEEEHHHHCTTCEEEEEEEETTCC
T ss_pred             ecCCCcCcceee-eeeecccCee-CCC-EEEEE-EeCCEEEEEEcCCCccC---CCcccCHHHhCCceEEEEEEEECCCC
Confidence            999988888754 33322 2333 356 67774 45789999999886432   12         267999999986554


Q ss_pred             ccceEEEEecCccceEEEeCCccCceEEEEEEEeeC--CCCCCCCccEEEeecCC
Q psy12061        439 EETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN--AGEGPESERYLERTYRK  491 (626)
Q Consensus       439 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~--~g~s~~s~~~~~~t~~~  491 (626)
                      ...    ........+.+.+|+|++.|.|+|+|.+.  .|.|.+|....+.|..+
T Consensus       146 ~~~----~~~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~~  196 (201)
T 3lqm_A          146 EKF----QITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD  196 (201)
T ss_dssp             CCE----EECCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECCCG
T ss_pred             cEE----EEEecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeCCC
Confidence            331    12344566999999999999999999997  67889999998888754

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.69  E-value=9.7e-17  Score=144.92  Aligned_cols=172  Identities=15%  Similarity=0.200  Sum_probs=111.3

Q ss_pred             CCCCceEEEEeeeCCCC--CCee--EEEeCC--E---Ec-----c-----------CCCcEEEccCC-----cEEEccCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKF--VWKKDG--N---II-----G-----------SGGRRKIFENG-----NLLISPVS   51 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i--~W~~~~--~---~i-----~-----------~~~~~~~~~~g-----~L~i~~v~   51 (626)
                      |.+|++|+|.|.+.+.+  .+.+  .|+|..  .   .+     .           ..+|+.+..++     +|.|.+++
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   91 (232)
T 3qhz_H           12 VKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMD   91 (232)
T ss_dssp             ECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCC
Confidence            57899999999997642  2455  999831  1   11     0           12477665443     59999999


Q ss_pred             CCCCEEEEEEEEcCC--------CCceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEee
Q psy12061         52 RDDSGIYSCTATNVH--------GMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH  119 (626)
Q Consensus        52 ~~d~G~Y~C~a~n~~--------g~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~  119 (626)
                      .+|+|.|.|.+.+..        ......+.|.|..    +|.+...+ ....+..|+.++|.|.+.+.+++.+.+.|++
T Consensus        92 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~  170 (232)
T 3qhz_H           92 PVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  170 (232)
T ss_dssp             GGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEEC-C-------CEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             hhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEec-ccccccCCCcEEEEEEEeeEeCCCeEEEEEE
Confidence            999999999999763        2223446777752    44444333 3345667999999999999765567889999


Q ss_pred             CCEEeccccCC--ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        120 NGVRIGNMDLN--ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       120 ~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +|..+......  ......+. ..+.|.|......| |.|+|.|.|..+.......|.+
T Consensus       171 ~g~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          171 GALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             GTBCTTEEECCCEECTTSCEE-EEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCEecceeeccceeCCCCCEE-EEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            98644321100  00011111 22478899988888 9999999999887766666554

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.69  E-value=6.2e-17  Score=146.81  Aligned_cols=162  Identities=19%  Similarity=0.236  Sum_probs=107.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EE---c------------cCCCcEEEccC----CcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NI---I------------GSGGRRKIFEN----GNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---i------------~~~~~~~~~~~----g~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|.+.+ +.+.|.|+|++  ..   +            ...+|+.+..+    .+|.|.+++.+|+|.|.|
T Consensus        11 v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (238)
T 1bec_A           11 AVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFC   89 (238)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEEE
T ss_pred             EeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEEEE
Confidence            578999999999954 67899999853  11   1            11356666532    379999999999999999


Q ss_pred             EEEcCCCC-----ceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC
Q psy12061         61 TATNVHGM-----DESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL  129 (626)
Q Consensus        61 ~a~n~~g~-----~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~  129 (626)
                      .+.|..+.     ....+.|.|..      +|.+....|....+..|+.++|.|.+.+.+++.+.+.|+|||..+.....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~  169 (238)
T 1bec_A           90 ASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVS  169 (238)
T ss_dssp             EEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEE
T ss_pred             EEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCcee
Confidence            99987531     12345788865      34444444555556689999999999986433357899999999865320


Q ss_pred             CccCCCeeEecCCeEEE------eecCCCC-CEeEEEEEEeCCC
Q psy12061        130 NELETPNINIDGGLLEI------TNASFAD-AGEYECVVKSTVG  166 (626)
Q Consensus       130 ~~~~~~~~~~~~~~l~i------~~~~~~d-~g~Y~C~a~n~~g  166 (626)
                      ..  .......++.+.+      ......| .|.|+|.|.|...
T Consensus       170 ~~--~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          170 TD--PQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EC--SSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             cc--cceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            00  0011123344333      3333333 6789999999743

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.69  E-value=4.5e-16  Score=139.40  Aligned_cols=191  Identities=13%  Similarity=0.137  Sum_probs=122.2

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc---cceEEE---EecCccceEEEeCCccC
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE---ETAVYY---LSRTTRNWALIVGLQPD  462 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~---~~~~~~---~~~~~~~~~~i~~L~p~  462 (626)
                      .|+..|.++.+...+..++.+.|++....+..   ....|.|.|+......   ......   ........+...+|.++
T Consensus        28 ~pP~~P~~l~C~~~~~~~~~c~W~p~~~~~~~---~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~  104 (236)
T 1axi_B           28 NSSGEPKFTKCRSPERETFSCHWTDEVHHGTK---NEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIA  104 (236)
T ss_dssp             ----CCCEEEEEBSSSSCEEEEECCC-----------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSS
T ss_pred             CCCCCCcCCeEEeCCCCEEEEEecCCCCCCCC---CCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCccc
Confidence            35558999988888889999999975432110   0137888886654321   011000   00122234556788999


Q ss_pred             ceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEE--eeeCC----CEEEEEEeecCCC-CCCC-ceeeEEEEEE
Q psy12061        463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHI--KGINP----TTVHVTWRYVSPS-FEEE-PIIGYKVRVW  534 (626)
Q Consensus       463 t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~--~~~~~----~~~~l~W~~~~~~-~~~~-~i~~Y~i~~~  534 (626)
                      +.|.|+|.| | .   ..+....+.....+.+.||.++.+  ...+.    ..+.|+|++|... ..+| .+..|+|+|+
T Consensus       105 ~~Y~~~V~a-N-~---~~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~  179 (236)
T 1axi_B          105 IPYCIKLTS-N-G---GTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYK  179 (236)
T ss_dssp             SEEEEEEEE-T-T---EEEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEE
T ss_pred             ceEEEEEEE-C-C---ccCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEE
Confidence            999999999 7 2   334445565556667779999954  33322    3599999964332 2355 6789999998


Q ss_pred             EeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCC--CCCCCCCcEEEeec
Q psy12061        535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG--DGRMSSPAITFQMG  592 (626)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G--~g~~s~~~~~~~~~  592 (626)
                      ..+..    ..........+++.|.+|+||+.|.|+|||.+..|  .|++|.+ +.|++.
T Consensus       180 ~~~~~----~w~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~-~~~~~p  234 (236)
T 1axi_B          180 EVNET----KWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEV-LYVTLP  234 (236)
T ss_dssp             ETTCS----SCEECCCBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCC-EEECCC
T ss_pred             ECCCC----ceEEEeccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCC-EEEECC
Confidence            76543    22222233568899999999999999999999998  8899865 446554

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.69  E-value=8.2e-17  Score=130.30  Aligned_cols=124  Identities=19%  Similarity=0.334  Sum_probs=103.4

Q ss_pred             EEEecCCCCCCCCcc-EEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEE
Q psy12061        366 VQAINDVGPGPESEV-VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY  444 (626)
Q Consensus       366 v~a~n~~g~~~~s~~-~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~  444 (626)
                      |+|.|..|.|.+|.. +.++|.+.+|. +|.++++...+.+++.|+|++|...    +|.|.+|.|+|+..+........
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~   77 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAP----NGIILAYQITHRLNTTTANTATV   77 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECCCCSCC----CSCCCEEEEEEEESSCCCSCCCE
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCC-CCCceEEEecCCCEEEEEEcCCCCC----CCceEEEEEEEEECCCCCceEEE
Confidence            678999999998874 77888888887 8999999999999999999998643    36799999999887654333222


Q ss_pred             EEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       445 ~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .........+.|.+|+|++.|.|+|+|.|..|.|++|..+.++|....|+
T Consensus        78 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  127 (130)
T 1wfo_A           78 EVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP  127 (130)
T ss_dssp             EEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSSCCCC
T ss_pred             EEeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecCCCCCC
Confidence            34455667799999999999999999999999999999999999887765

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.69  E-value=2.2e-16  Score=144.51  Aligned_cols=165  Identities=17%  Similarity=0.228  Sum_probs=110.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--E--E-c------------cCCCcEEEcc----CCcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--N--I-I------------GSGGRRKIFE----NGNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~--~-i------------~~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++++|.|.+. .+.+.|.|+|+.  .  . +            ...+|+.+..    +.+|.|.+++.+|+|.|.|
T Consensus        15 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   93 (252)
T 1oga_E           15 RKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLC   93 (252)
T ss_dssp             EETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEE
T ss_pred             EcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEEE
Confidence            57899999999995 457899999842  1  1 1            1236777754    2479999999999999999


Q ss_pred             EEEcCC---CCceeeEEEEEEe------CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc
Q psy12061         61 TATNVH---GMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE  131 (626)
Q Consensus        61 ~a~n~~---g~~~~~~~l~v~~------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~  131 (626)
                      .+.|..   ......+.|.|..      +|.+....|....+..|+.++|.|.+.+..++.+.+.|+|||..+.......
T Consensus        94 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~  173 (252)
T 1oga_E           94 ASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTD  173 (252)
T ss_dssp             EEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEEC
T ss_pred             EEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccc
Confidence            999862   1122345677763      3444333344444557999999999998643335789999999886532100


Q ss_pred             ---------cCCCeeEecCCeEEEeecCCC-CCEeEEEEEEeCCCce
Q psy12061        132 ---------LETPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKI  168 (626)
Q Consensus       132 ---------~~~~~~~~~~~~l~i~~~~~~-d~g~Y~C~a~n~~g~~  168 (626)
                               .....+ .-.+.|.|...... |.|.|+|.+.|.....
T Consensus       174 ~~~~~~~~~~~~gt~-~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          174 PQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             SSCEESCTTSTTCCE-EEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             cccccccccCCCCCE-EEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence                     000111 11234777766554 5789999999976543

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=128.58  Aligned_cols=121  Identities=28%  Similarity=0.430  Sum_probs=103.4

Q ss_pred             EEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEE
Q psy12061        365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY  444 (626)
Q Consensus       365 ~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~  444 (626)
                      +|+|.|..|.|.+|..+.+.|.+.+|..+|.++++...+.+++.|+|++|....  .++.|.+|.|+|+.........  
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~--~~g~i~~Y~v~~~~~~~~~~~~--   78 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGT--QNGFITGYKIRHRKTTRRGEME--   78 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTT--CCSCCCEEEEEEEESSSSCCEE--
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcC--CCcEEeEEEEEEEECCCCcceE--
Confidence            578999999999999999999999998789999999999999999999987532  2377999999998876554322  


Q ss_pred             EEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       445 ~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                       ........+.|.+|+|++.|.|+|+|.|..|.|++|..+.++|.+
T Consensus        79 -~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~e  123 (124)
T 2ed9_A           79 -TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE  123 (124)
T ss_dssp             -EECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECCC
T ss_pred             -EecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence             244566779999999999999999999999999999999998875

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=4e-16  Score=123.83  Aligned_cols=116  Identities=31%  Similarity=0.424  Sum_probs=97.4

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|.+|..+.+.|.+++|..+|.++++...+.+++.|+|++|..      +.|.+|.|+|+..+................
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~------g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~   74 (119)
T 2ee2_A            1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE------KIVESYQIRYWAAHDKEEAANRVQVTSQEY   74 (119)
T ss_dssp             CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC------TTCCEEEEEEEESSSCGGGCEEEEEETTCS
T ss_pred             CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC------CccceEEEEEEECCCcccCcEEEEcCCCEe
Confidence            67788888889999999998899999999999999999999874      458999999988765443333333344556


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .+.|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+..|+
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  116 (119)
T 2ee2_A           75 SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASGP  116 (119)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECCCCCCS
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCCCCCC
Confidence            799999999999999999999999999999999999876654

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.69  E-value=3e-15  Score=151.86  Aligned_cols=164  Identities=11%  Similarity=0.114  Sum_probs=110.9

Q ss_pred             CCceEEEEeeeCCC-CCC-eeEEEeCCEEccC-CCcEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCCceeeE-
Q psy12061          4 EGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS-GGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKG-   73 (626)
Q Consensus         4 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~-~~~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~-   73 (626)
                      +|+.++|.|.+.|. |.| +|.|++++..... ........+|      .|.|.....+ .|.|+|.|.|..+.....+ 
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~  227 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIF  227 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEe
Confidence            56899999999997 766 9999997654210 0111112233      4889888877 9999999999988755443 


Q ss_pred             ----------EEEEEeC----------------------------------------------------CceeeeCCCce
Q psy12061         74 ----------RLIVLHG----------------------------------------------------PSYYEQLPPKI   91 (626)
Q Consensus        74 ----------~l~v~~~----------------------------------------------------p~~~~~~~~~~   91 (626)
                                .+.+..+                                                    |.+...+|...
T Consensus       228 ~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~  307 (512)
T 1zvo_C          228 RWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQ  307 (512)
T ss_pred             cCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChH
Confidence                      2333322                                                    33333445445


Q ss_pred             EEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC---Cc-cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         92 TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL---NE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        92 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      .+.+|++++|.|.+.+..++.+.|.|+|||..+.....   .. ..++.+. ..+.|.|..+...|.|.|+|.|.|..+.
T Consensus       308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~-~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQS-QHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             HhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEE-EEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            56789999999999997555678899999998652110   00 0011111 2346999999999999999999998876


Q ss_pred             eE
Q psy12061        168 IS  169 (626)
Q Consensus       168 ~~  169 (626)
                      ..
T Consensus       387 ~~  388 (512)
T 1zvo_C          387 PQ  388 (512)
T ss_pred             CC
Confidence            43

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.69  E-value=9.9e-17  Score=145.30  Aligned_cols=172  Identities=14%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEeC--CE---Ec---c----------------CCCcEEEccCC-----cEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKKD--GN---II---G----------------SGGRRKIFENG-----NLLIS   48 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~~--~~---~i---~----------------~~~~~~~~~~g-----~L~i~   48 (626)
                      |.+|++|+|.|.+.+.+.    ..+.|+|.  +.   .+   .                ..+|+.+..++     +|.|.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   91 (239)
T 3tv3_H           12 VEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLN   91 (239)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEEC
T ss_pred             EcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEEC
Confidence            578999999999987653    48999983  21   11   1                12566665432     49999


Q ss_pred             cCCCCCCEEEEEEEEcCCC-------------CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCc
Q psy12061         49 PVSRDDSGIYSCTATNVHG-------------MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL  111 (626)
Q Consensus        49 ~v~~~d~G~Y~C~a~n~~g-------------~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p  111 (626)
                      +++.+|+|.|.|.+.+..+             .......|.|..    +|.+...+ ....+..|+.++|.|.+.+.+++
T Consensus        92 ~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~l~C~~~~~~p~  170 (239)
T 3tv3_H           92 SVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPE  170 (239)
T ss_dssp             SCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEEC-CCCCC--TTEEEEEEEEEEEBSS
T ss_pred             CCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEEC-CChhhccCCcEEEEEEEeeEeCC
Confidence            9999999999999987642             112335666642    34444333 33345579999999999995544


Q ss_pred             ceeEEEeeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        112 DVAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       112 ~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      .+.+.|+++|..+.......  .....+. ..+.|.|......| |.|+|.|.|..+.......|.+
T Consensus       171 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          171 PVTVSWNSGALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEE-EEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CeEEEEEECCccCceEecCceECCCCCEE-EEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            56789999987543211100  0011111 22468899988888 9999999999887666665543

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.68  E-value=1.3e-15  Score=136.36  Aligned_cols=194  Identities=13%  Similarity=0.128  Sum_probs=126.9

Q ss_pred             CCCCCCceeEeecCCcCeEEEEEeeCCCCCcccC-cceEEEEEEecCCC----cceeeeeeeecceeeEEEEeCCCccee
Q psy12061        286 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAP-NIYYKIFWRKKNDT----EFQSETLKEYGNVGIAVVRIPSEFYYT  360 (626)
Q Consensus       286 ~p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~-~~~y~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~p~~  360 (626)
                      .|+..|.++........++.+.|++  ...++.. ...|.+.|+..+..    .+..+............+...+|.+++
T Consensus        28 ~pP~~P~~l~C~~~~~~~~~c~W~p--~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~  105 (236)
T 1axi_B           28 NSSGEPKFTKCRSPERETFSCHWTD--EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAI  105 (236)
T ss_dssp             ----CCCEEEEEBSSSSCEEEEECC--C--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSS
T ss_pred             CCCCCCcCCeEEeCCCCEEEEEecC--CCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccc
Confidence            3557888998777778999999997  3333333 35789988865432    233322111111234566677888999


Q ss_pred             EEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceE--EEeeec----ceEEEEeeeccccccccce-eeEEEEEEEE
Q psy12061        361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF--SRGFNS----TAINVTWNPIELIRENIRG-RLIGHRIKYW  433 (626)
Q Consensus       361 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~--~~~~~~----~si~l~W~~~~~~~~~~~~-~i~~Y~v~~~  433 (626)
                      .|.|+|.| | .+   .+....+.....+.+.+|.++.  +...+.    ..+.|+|++|.... ..+| .+..|+|+|+
T Consensus       106 ~Y~~~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~-~~~g~~~l~Yevry~  179 (236)
T 1axi_B          106 PYCIKLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNAD-IQKGWMVLEYELQYK  179 (236)
T ss_dssp             EEEEEEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSC-TTTTSCCEEEEEEEE
T ss_pred             eEEEEEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCcc-ccCCceeeEEEEEEE
Confidence            99999999 8 22   2444555555555555898985  333322    35999999986431 1134 5789999998


Q ss_pred             ecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCC--CCCCCccEEEeecC
Q psy12061        434 KEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG--EGPESERYLERTYR  490 (626)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g--~s~~s~~~~~~t~~  490 (626)
                      ..+...+..   ........+.|.+|+|++.|.|+|+|.+..|  .|++|..+.+.|.+
T Consensus       180 ~~~~~~w~~---~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p~  235 (236)
T 1axi_B          180 EVNETKWKM---MDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ  235 (236)
T ss_dssp             ETTCSSCEE---CCCBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred             ECCCCceEE---EeccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECCC
Confidence            876543332   2223446799999999999999999999988  78999988887754

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.67  E-value=4.8e-16  Score=118.57  Aligned_cols=99  Identities=20%  Similarity=0.392  Sum_probs=75.6

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .|..+|.++.+...+.+++.|+|++|+.+..+|.|.+|.|.|+..+.............++.+++.|.+|+|++.|.|+|
T Consensus         3 ~P~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~V   82 (102)
T 3n1f_C            3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKM   82 (102)
T ss_dssp             -CCSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEEEE
Confidence            57778999999999999999999965445589999999999987654321123334555667889999999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEee
Q psy12061        572 LAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       572 ~a~~~~G~g~~s~~~~~~~~  591 (626)
                      +|+|.+|.|++|.+. .++|
T Consensus        83 ~A~n~~G~G~~S~~~-~~~T  101 (102)
T 3n1f_C           83 QCFNEGGESEFSNVM-ICET  101 (102)
T ss_dssp             EEEETTEECCCCCCE-EEEC
T ss_pred             EEECCCcCCCCCCCE-Eeec
Confidence            999999999999654 3443

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=6e-16  Score=123.61  Aligned_cols=119  Identities=19%  Similarity=0.180  Sum_probs=94.9

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEE-eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCcc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSR-GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR  451 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~-~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~  451 (626)
                      |.|.+|..+.++|.+++|..+|.++++. ..+.+++.|+|++|.....  +|.|.+|+|+|+..................
T Consensus         1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~--~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~   78 (124)
T 2dbj_A            1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQ--DGELVGYRISHVWQSAGISKELLEEVGQNG   78 (124)
T ss_dssp             CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCST--TCCEEEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccC--CCeEeEEEEEEEECCCCCccceEEEeCCCc
Confidence            6788899999999999998899999998 5788999999999853322  488999999996544332111221223455


Q ss_pred             ceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCC
Q psy12061        452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP  493 (626)
Q Consensus       452 ~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p  493 (626)
                      ..+.|.+|.+++.|.|+|+|+|..|.|++|..+.++|.++..
T Consensus        79 ~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~~~~~  120 (124)
T 2dbj_A           79 SRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG  120 (124)
T ss_dssp             SCEEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECCCSCC
T ss_pred             ceEEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCCC
Confidence            679999999999999999999999999999999999987643

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.67  E-value=1.5e-16  Score=121.09  Aligned_cols=77  Identities=29%  Similarity=0.502  Sum_probs=68.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|+|.|+|||.+|...  .|+.+..++   +|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus        17 v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   96 (100)
T 3knb_A           17 IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH   96 (100)
T ss_dssp             EETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEE
Confidence            568999999999999999999999999999754  466666554   699999999999999999999999999999998


Q ss_pred             EE
Q psy12061         77 VL   78 (626)
Q Consensus        77 v~   78 (626)
                      |.
T Consensus        97 V~   98 (100)
T 3knb_A           97 IR   98 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=2.8e-16  Score=125.53  Aligned_cols=115  Identities=30%  Similarity=0.402  Sum_probs=93.1

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|..+.++|.+..|+.+|.++++...+.+++.|+|+  +|...++.|.+|.|+|+..+..... ..........+.
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~   77 (121)
T 2dlh_A            1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTMDPTQHVN-NWMKHNVADSQI   77 (121)
T ss_dssp             CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEE--CCSCCCSCEEEEEEECCSCTTSCTT-TSCCCCCSSCSE
T ss_pred             CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEEC--CCCCCCCcEeEEEEEEEeCCCCCcc-ccEEEecCCceE
Confidence            6788999999999999998899999999889999999999  5677889999999998765433221 122223346788


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +.|.+|.|++.|.|+|+|+|..|.|++|++ +.+++...
T Consensus        78 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~-~~~~T~~~  115 (121)
T 2dlh_A           78 TTIGNLVPQKTYSVKVLAFTSIGDGPLSSD-IQVITQTG  115 (121)
T ss_dssp             ECCBSCCSSCEEEEEEEEEESSCBCCCCCC-EEEECCCC
T ss_pred             EEecCCCCCCEEEEEEEEEeCCccCCCCCC-EEEECCCC
Confidence            999999999999999999999999999965 45666543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.67  E-value=4.4e-17  Score=156.98  Aligned_cols=157  Identities=16%  Similarity=0.273  Sum_probs=105.7

Q ss_pred             CCCCceEEEEeeeCCC-CC-CeeEEEeCCEEcc---------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIG---------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~---------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      +.+|++++|.|.+.|. |. |.|.|+|+|..+.         .++++.+  .+.|.|.+++.+| |.|+|.|.|..+...
T Consensus       132 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  208 (344)
T 1za6_B          132 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSNTK  208 (344)
T ss_dssp             TTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE--EEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred             ccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEE--EEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            4689999999999987 65 7999999997642         1122221  1269999999888 999999999987643


Q ss_pred             eeEEEE------------------------EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecc
Q psy12061         71 SKGRLI------------------------VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN  126 (626)
Q Consensus        71 ~~~~l~------------------------v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~  126 (626)
                      ....+.                        +..+|.+...++.... ..|..++|.|.+.+.+++.+.|.|+|||..+..
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  287 (344)
T 1za6_B          209 VDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  287 (344)
T ss_dssp             EEEEECCCCC--------------------CCBCCEEEEECCCGGG-GGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCS
T ss_pred             ceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHh-ccCCcEEEEEEEeeEECCCeEEEEEECCeECCC
Confidence            332221                        1234554444333332 356779999999997656678899999988864


Q ss_pred             ccCCccCCCee-EecC------CeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061        127 MDLNELETPNI-NIDG------GLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus       127 ~~~~~~~~~~~-~~~~------~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ...     .+. ...+      +.|.|......|.|.|+|.|.|....
T Consensus       288 ~~~-----~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          288 YKT-----TPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EEE-----CCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             cEe-----cceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence            310     111 1122      23555555556799999999987653

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.66  E-value=5.3e-15  Score=127.51  Aligned_cols=154  Identities=14%  Similarity=0.292  Sum_probs=116.5

Q ss_pred             CCCceEEEEeeeCC-CCC---CeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          3 GEGGNVTIFCNPEA-APK---PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         3 ~~G~~~~l~C~~~g-~p~---p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      ..|+.++|+|.+.| .|.   -.+.|+|||.++...       .+.|.|..+...|+|.|+|.+.|..|.......+.|.
T Consensus        15 ~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT   87 (304)
T 3shs_A           15 LAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM   87 (304)
T ss_dssp             CTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEE
T ss_pred             cCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------cceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEe
Confidence            57999999999865 463   389999999987532       3469999999999999999999988876655555555


Q ss_pred             eCC--ceeeeCCCceEEecCCcEEEEEEe--cccCCc----ceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecC
Q psy12061         79 HGP--SYYEQLPPKITIAAHRNLQLRCSA--HTEELL----DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS  150 (626)
Q Consensus        79 ~~p--~~~~~~~~~~~v~~g~~~~l~C~~--~~~p~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  150 (626)
                      ..+  ......|.+..+..|++++|.+.+  .|..+|    ..+|.|+||+..+..              ...|.+....
T Consensus        88 ~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg--------------Aq~lT~sS~T  153 (304)
T 3shs_A           88 EEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------------TQDITIQEFT  153 (304)
T ss_dssp             CBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES--------------SSEEEECSCC
T ss_pred             ccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC--------------ccccceeeEE
Confidence            433  233344777788889999999988  543322    578999999988853              2367888888


Q ss_pred             CCCCEeEEEEEEeCCCc--eEEEEEEEEe
Q psy12061        151 FADAGEYECVVKSTVGK--ISTKTTVIVE  177 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~--~~~~~~l~v~  177 (626)
                      ..++|.|+|.+.|..+.  .+.++.+.+.
T Consensus       154 ateaG~YtV~VTn~~~~c~~s~~~~i~~~  182 (304)
T 3shs_A          154 ADKNGVYTVKVWGESEDSAASASTKIMLA  182 (304)
T ss_dssp             GGGCEEEEEEEESSSGGGCEEEEEEEEEC
T ss_pred             ecCCeEEEEEEEcCCCCcccccceEEEEE
Confidence            89999999999998774  3455555544

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=2.1e-16  Score=142.15  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=108.3

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--EE---c------------c-CCCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--NI---I------------G-SGGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~---i------------~-~~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +.+|++|+|.|.+.+.  +.+.|.|+|..  ..   |            . ..+|+.+..+.     +|.|.+++.+|+|
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   92 (230)
T 1ypz_F           13 RPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEA   92 (230)
T ss_dssp             EETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCS
T ss_pred             EeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCE
Confidence            5689999999999875  56799999842  11   1            0 24666665432     6999999999999


Q ss_pred             EEEEEEEcC--CCC--ceeeEEEEEEe---------CCceeeeCCCceEEecCCcEEEEEEeccc-CCcceeEEEee-CC
Q psy12061         57 IYSCTATNV--HGM--DESKGRLIVLH---------GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTH-NG  121 (626)
Q Consensus        57 ~Y~C~a~n~--~g~--~~~~~~l~v~~---------~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~-~~  121 (626)
                      .|.|.+.+.  ...  ....+.|.|..         +|.....+|....+..|+.++|.|.+.+. |. .+.+.|++ ||
T Consensus        93 ~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~-~~~v~W~~~~g  171 (230)
T 1ypz_F           93 IYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPD-VIRVYWKEKDG  171 (230)
T ss_dssp             EEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSC-CCEEEEECTTS
T ss_pred             EEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCC-CeEEEEEccCC
Confidence            999999985  111  22446888862         23222222444445679999999999986 54 35789999 88


Q ss_pred             EEeccccCC--ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061        122 VRIGNMDLN--ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ..+......  ......+. ..+.|.|..... + |.|+|.+.|..+..
T Consensus       172 ~~l~~~~~~~~~~~~~~~~-~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          172 NTILDSQEGDTLKTNDTYM-KFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             SCBCCCEECCCEEETTEEE-EEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             eEccccccceeecCCCCEE-EEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            776432100  00011111 124688888765 4 99999999987653

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.66  E-value=1.3e-15  Score=119.70  Aligned_cols=105  Identities=21%  Similarity=0.390  Sum_probs=82.0

Q ss_pred             cCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEE
Q psy12061        489 YRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH  568 (626)
Q Consensus       489 ~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~  568 (626)
                      .+..|+.+|.++++...+.+++.|+|++++....++.|.+|.|+|+..+................+.+.|.+|.|++.|.
T Consensus         4 ~~~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   83 (114)
T 1x4y_A            4 GSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYD   83 (114)
T ss_dssp             SCCSCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEE
T ss_pred             cccCCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEE
Confidence            45678889999999999999999999964435688999999999876544311122223445667889999999999999


Q ss_pred             EEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        569 MRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       569 ~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      |+|+|+|..|.|++|+++ .++|.+.
T Consensus        84 ~~V~A~n~~G~g~~S~~v-~~~T~~~  108 (114)
T 1x4y_A           84 IKMQCFNEGGESEFSNVM-ICETKAR  108 (114)
T ss_dssp             EEEEEECTTCCCCCCCCE-EEECCCC
T ss_pred             EEEEEEcCCccCCCcCCE-EEEeCCC
Confidence            999999999999999664 4666543

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.66  E-value=8.2e-16  Score=120.66  Aligned_cols=114  Identities=18%  Similarity=0.325  Sum_probs=93.4

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|++|..+.++|.+++|..+|.++++.. +.++|.|+|++|.....  +|.|.+|+|+|+..+....  .  .......
T Consensus         1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~--ng~i~gY~v~y~~~~~~~~--~--~~~~~~~   73 (117)
T 1wj3_A            1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMEN--ESEVTGYKVFYRTSSQNNV--Q--VLNTNKT   73 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSS--SCCEEEEEEEEEESSCSSC--E--EEEESSS
T ss_pred             CcCCCCCCEEEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCcccc--CCceeEEEEEEEECCCCCC--e--EEeCCCc
Confidence            57788999999999999998999998877 88899999999854322  4889999999988765433  1  1122334


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .+.+. |.+++.|.|+|+|+|..|.|++|+.+.++|.+++|+
T Consensus        74 ~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~~~v~p  114 (117)
T 1wj3_A           74 SAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP  114 (117)
T ss_dssp             EEEEE-CCCSSCEEEEEEEEESSCCCCBCCCEEECCCCCCCS
T ss_pred             EEEEE-CCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCCCC
Confidence            57777 999999999999999999999999999999988765

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.66  E-value=3.5e-16  Score=113.94  Aligned_cols=72  Identities=26%  Similarity=0.437  Sum_probs=63.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.| |.|.|.|+|||.+|..+.++.+..+|   +|.|.+++.+|+|.|+|.|.    .....+.|.|.
T Consensus         8 ~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~----n~~~~a~l~V~   82 (84)
T 2lu7_A            8 STPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP----QDSRIFLVSVE   82 (84)
T ss_dssp             ECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECT----TTCEEEEEEEC
T ss_pred             EecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEEC----CEEEEEEEEEE
Confidence            578999999999977 89999999999999999999888776   59999999999999999984    45677888884

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=9.1e-16  Score=122.56  Aligned_cols=106  Identities=23%  Similarity=0.397  Sum_probs=88.1

Q ss_pred             eCCCCCCCCccEEEeecCC------CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccce
Q psy12061        473 NNAGEGPESERYLERTYRK------APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT  546 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~~------~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~  546 (626)
                      +..|.|++|..+.++|.+.      +|. +|.++++.... +++.|+|+  +|...++.|.+|.|+|+. +..   ....
T Consensus         2 t~~G~g~~S~~~~~~T~~~~~~~~~~P~-~P~~l~~~~~~-~sv~l~W~--~P~~~~g~i~~Y~v~y~~-~~~---~~~~   73 (126)
T 1x5i_A            2 SSGSSGPATDWLSAETFESDLDETRVPE-VPSSLHVRPLV-TSIVVSWT--PPENQNIVVRGYAIGYGI-GSP---HAQT   73 (126)
T ss_dssp             CSCCCCCCCCCCCSCCCCTTSBCSSCCC-SCSEEEEEEET-TEEEEEEE--CCSCTTBCCCEEEEEECS-SCG---GGEE
T ss_pred             CCCccCCCCCCEEeECccccCccCCCCC-CCCeeEEEecC-CEEEEEEc--CCCCCCCCEeEEEEEEEc-CCC---CceE
Confidence            4578999999999999987      665 89999999887 99999999  566778999999998863 221   1233


Q ss_pred             eeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCc
Q psy12061        547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA  586 (626)
Q Consensus       547 ~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~  586 (626)
                      .....+.+.+.|.+|+|++.|.|+|+|+|..|.|+++...
T Consensus        74 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~  113 (126)
T 1x5i_A           74 IKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES  113 (126)
T ss_dssp             EECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCC
T ss_pred             EEeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeE
Confidence            4456778999999999999999999999999999988644

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.65  E-value=6.5e-18  Score=150.31  Aligned_cols=159  Identities=14%  Similarity=0.176  Sum_probs=104.2

Q ss_pred             CCCCceEEEEeeeCCCCC---CeeEEEeCCEEccCC----------CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK---PKFVWKKDGNIIGSG----------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~---p~i~W~~~~~~i~~~----------~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      +.+|++++|.|.+.|.++   +.|.|  ++.++...          +++  ...++|.|.+++.+|+|.|+|.|.|..+.
T Consensus        16 v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~   91 (214)
T 1ow0_A           16 LLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCY--SVSSVLPGCAEPWNHGKTFTCTAAYPESK   91 (214)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCC--CEEEECTTTHHHHHHTCEEEEEECCSSCS
T ss_pred             hccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcE--EEEEEEEEeHHHcCCCCeEEEEEecCCCC
Confidence            357999999999999854   69999  44444211          111  12235889999999999999999998765


Q ss_pred             ceeeEEEE---EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCC
Q psy12061         69 DESKGRLI---VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGG  142 (626)
Q Consensus        69 ~~~~~~l~---v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~  142 (626)
                      ....+.+.   +..+|.+...++....+..|+.++|.|.+.+.+++.++|.|+|||..+.......  ......   .++
T Consensus        92 ~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~--~~~~~~~~~~dg  169 (214)
T 1ow0_A           92 TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT--WASRQEPSQGTT  169 (214)
T ss_dssp             SCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE--CCCEECSCSSSC
T ss_pred             CceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee--cCCcccccCCCC
Confidence            43334442   2346655444444444678999999999999655556889999999886542100  001112   334


Q ss_pred             eEEE------eecCCCCCEeEEEEEEeCCC
Q psy12061        143 LLEI------TNASFADAGEYECVVKSTVG  166 (626)
Q Consensus       143 ~l~i------~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      .+++      ......|.|.|+|.|.|...
T Consensus       170 t~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          170 TFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            3433      33333458999999998764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.64  E-value=3.3e-16  Score=121.95  Aligned_cols=81  Identities=17%  Similarity=0.218  Sum_probs=70.4

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc----------cCCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      ..+..+.|.|.+.|+|.|+|+|+|||.+|..+.++.+.          ..++|.|.++...|+|.|+|.|.|..|.+...
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            45789999999999999999999999999877765432          12579999999999999999999999999999


Q ss_pred             EEEEEEeCCce
Q psy12061         73 GRLIVLHGPSY   83 (626)
Q Consensus        73 ~~l~v~~~p~~   83 (626)
                      +.|.|...|..
T Consensus        93 ~~l~v~~~P~~  103 (126)
T 1he7_A           93 IMAAFMDNPFE  103 (126)
T ss_dssp             EEECCCSCTTS
T ss_pred             EEEEEEcCCCC
Confidence            99998777643

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=6.1e-16  Score=125.60  Aligned_cols=115  Identities=23%  Similarity=0.376  Sum_probs=93.5

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|..+.++|.+.+|+.+|.++++...+.+++.|+|+++.....++.|.+|.|+|+..+....  ..........+.
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~   78 (132)
T 1x5h_A            1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSD--VTETLVSGTQLS   78 (132)
T ss_dssp             CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEE--EECCBCCTTCCE
T ss_pred             CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCc--cEEEEeCCCccE
Confidence            678899999999999999888999999989999999999953333378999999999887554311  111235567889


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.|.+|+|++.|.|+|+|+|..|.|++|.++ .+++.+
T Consensus        79 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~  115 (132)
T 1x5h_A           79 QLIEGLDRGTEYNFRVAALTINGTGPATDWL-SAETFE  115 (132)
T ss_dssp             EEEECCCSSCEEEEECEEEETTEEEEECCCE-EEECCS
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCccCCCCcCE-EeEcCc
Confidence            9999999999999999999999999999664 466654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=5.8e-16  Score=121.93  Aligned_cols=84  Identities=19%  Similarity=0.268  Sum_probs=74.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+.++.+...   ++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        19 v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   98 (114)
T 2cqv_A           19 VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV   98 (114)
T ss_dssp             EETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred             EeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEE
Confidence            56899999999999999999999999999988778877643   469999999999999999999999999999999998


Q ss_pred             eCCceee
Q psy12061         79 HGPSYYE   85 (626)
Q Consensus        79 ~~p~~~~   85 (626)
                      ..|....
T Consensus        99 ~~p~~P~  105 (114)
T 2cqv_A           99 DKPDPPA  105 (114)
T ss_dssp             CSCSCCC
T ss_pred             CCCCCCC
Confidence            8775443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.64  E-value=7.8e-16  Score=149.36  Aligned_cols=163  Identities=15%  Similarity=0.158  Sum_probs=109.3

Q ss_pred             CCCCceEEEEeeeCCC-CCC---eeEEEeCCEEccCC--CcEEEccC------CcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP---KFVWKKDGNIIGSG--GRRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p---~i~W~~~~~~i~~~--~~~~~~~~------g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      +.+|++++|.|.+.|. |.|   .|.|+|++..+...  .......+      ..|.|..++.+|+|.|+|.|.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            4679999999999988 333   79999998765321  11111122      269999999999999999999987754


Q ss_pred             eeeEEE----EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc---cCCCeeEecCC
Q psy12061         70 ESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGG  142 (626)
Q Consensus        70 ~~~~~l----~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~  142 (626)
                      .....+    .+..+|.+... +.......|+.++|.|.+.+..++.++|.|+|||..+.......   ..+..+. ...
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~-~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~-~~s  337 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTI-PPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYF-VYS  337 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEee-CCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEE-EEE
Confidence            333333    33345655443 33333446999999999999766678899999999875432100   0001111 123


Q ss_pred             eEEEeecCCCCCEeEEEEEEeCCC
Q psy12061        143 LLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus       143 ~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      .|.|......|.|.|+|.|.|..-
T Consensus       338 ~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          338 KLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEEcHHHhCCCCcEEEEEEeCCC
Confidence            466777666789999999998754

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3.6e-15  Score=117.43  Aligned_cols=105  Identities=21%  Similarity=0.257  Sum_probs=84.5

Q ss_pred             eecCCCCCCCCceEEEeee--CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061        487 RTYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~--~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  564 (626)
                      +|.++.|+.+|.++++...  +.+++.|+|+  +|...+|.|.+|.|+|+...................+.+.|.+|.|+
T Consensus         2 ~T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   79 (114)
T 2ede_A            2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQ--PPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLD   79 (114)
T ss_dssp             CCCCCCCCSCCEEEEEEECSSCSSCEEEEEE--CCSSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSS
T ss_pred             CCCCCCCCCCCcceEEEEccCCCCEEEEEEC--CCCCCCCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCC
Confidence            4677888889999999888  7799999999  66778889999999987644332222334455678899999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +.|.|+|+|+|..|.|++|.+. .+++.+.
T Consensus        80 t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~~  108 (114)
T 2ede_A           80 TMYYFRIQARNSKGVGPLSDPI-LFRTLKV  108 (114)
T ss_dssp             CEEEEEEEEECSSCBCCCCCCE-EEECCCS
T ss_pred             CEEEEEEEEEeCCcCcCCcccE-EEEecCC
Confidence            9999999999999999999764 4666543

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=2.8e-16  Score=125.52  Aligned_cols=118  Identities=27%  Similarity=0.349  Sum_probs=96.6

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|.+|..+.++|.++.|+.+|.++++...+.+++.|+|++|...    +|.|.+|.|+|+...................
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~   76 (121)
T 2dlh_A            1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP----NGQIQGYRVYYTMDPTQHVNNWMKHNVADSQ   76 (121)
T ss_dssp             CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCSCC----CSCEEEEEEECCSCTTSCTTTSCCCCCSSCS
T ss_pred             CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCCCC----CCcEeEEEEEEEeCCCCCccccEEEecCCce
Confidence            678889888899999999879999999988999999999998543    3779999999976654322211111233556


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .+.|.+|+|++.|.|+|+|.|..|.|++|..+.++|.+++|.
T Consensus        77 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  118 (121)
T 2dlh_A           77 ITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGP  118 (121)
T ss_dssp             EECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECCCCCSC
T ss_pred             EEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECCCCCCC
Confidence            799999999999999999999999999999999999988876

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.64  E-value=8.7e-16  Score=139.46  Aligned_cols=172  Identities=15%  Similarity=0.264  Sum_probs=110.3

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeC--CE---Ec--------------cCCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKD--GN---II--------------GSGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~--~~---~i--------------~~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  +...+.|+|.  +.   .+              ...+|+.+..+.     +|.|.+++.+|+
T Consensus        11 v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   90 (248)
T 3u2s_H           11 VQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDT   90 (248)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHC
Confidence            5789999999999763  4568999973  21   11              013566665433     499999999999


Q ss_pred             EEEEEEEEcCC----------------------CCceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccC
Q psy12061         56 GIYSCTATNVH----------------------GMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEE  109 (626)
Q Consensus        56 G~Y~C~a~n~~----------------------g~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p  109 (626)
                      |.|.|.+.+..                      ........|.|..    +|.+...++ ...+..|+.++|.|.+.+..
T Consensus        91 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~-~~~~~~g~~~~L~C~~~~~~  169 (248)
T 3u2s_H           91 ATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYF  169 (248)
T ss_dssp             EEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECC-C------CEEEEEEEEEEEB
T ss_pred             EEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCC-CccccCCCcEEEEEEEeeEE
Confidence            99999998752                      1122345777752    344443333 33456799999999999865


Q ss_pred             CcceeEEEeeCCEEeccccCCc--cCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        110 LLDVAYIWTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       110 ~p~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      ++.+.+.|+++|..+.......  ..+..+. ..+.|.|......| |.|+|.+.|..+.......+.+
T Consensus       170 P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          170 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             SSCCEEEEGGGTBCTTEEECCCEECTTSCEE-EEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCCeEEEEeECCccCceeecCceECCCCCEE-EEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            4457889999986543211100  0111111 22468888888788 9999999999877665555543

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=6.6e-16  Score=124.09  Aligned_cols=112  Identities=21%  Similarity=0.343  Sum_probs=89.5

Q ss_pred             CccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc-----cceeeecCccce
Q psy12061        481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA-----NDTIIPVGNTLD  555 (626)
Q Consensus       481 s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~-----~~~~~~~~~~~~  555 (626)
                      |+.+.++|.+++|+.+|.++++...+.+++.|+|++++....+|.|.+|.|+|+..+......     ........+.+.
T Consensus         2 S~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T 1uen_A            2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTH   81 (125)
T ss_dssp             CCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSE
T ss_pred             CccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccE
Confidence            456778999999988999999999999999999995333457889999999998766542211     123445677889


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.|.+|+|++.|.|+|+|+|..|.|++|.++ .++|.+
T Consensus        82 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~  118 (125)
T 1uen_A           82 GMLPGLEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPE  118 (125)
T ss_dssp             EEEESCCSSCEEEEEEEEEESSCEEEECCCE-EEECCC
T ss_pred             EEeCCCCCCCEEEEEEEEecCCCCCCCCCCE-EEECCC
Confidence            9999999999999999999999999999765 465553

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.63  E-value=3.8e-17  Score=149.84  Aligned_cols=172  Identities=13%  Similarity=0.093  Sum_probs=53.1

Q ss_pred             CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC--------ce
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM--------DE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~--------~~   70 (626)
                      +.+|+.++|.|.+.|. |.+  +|+|+|+++++............+|.|.....+|.+.|+|.|.|..+.        ..
T Consensus        98 ~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s  177 (291)
T 1mq8_A           98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS  177 (291)
T ss_dssp             CCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECC
T ss_pred             ccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccc
Confidence            5789999999999887 443  699999998885322100001124777766677777999999987653        23


Q ss_pred             eeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeec
Q psy12061         71 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA  149 (626)
Q Consensus        71 ~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  149 (626)
                      ....|.|.++|...........+.+|+.++|.|.+.+.+++ .+.+.|+++|+.+....         ...++.+.+..+
T Consensus       178 ~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~---------~~~g~~~~~~~~  248 (291)
T 1mq8_A          178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV---------TYGNDSFSAKAS  248 (291)
T ss_dssp             CCEECBC-------------------------------------------------------------------------
T ss_pred             cceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee---------eecCCeEEEEEe
Confidence            45688888876442211112367899999999999997554 56789999999987531         112334444444


Q ss_pred             ---CCCC--CEeEEEEEEeCCCceEEEEEEEEeCCCCC
Q psy12061        150 ---SFAD--AGEYECVVKSTVGKISTKTTVIVEGPPGL  182 (626)
Q Consensus       150 ---~~~d--~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~  182 (626)
                         ..++  .+.|+|.|.|.....+....|.|+..|.+
T Consensus       249 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~  286 (291)
T 1mq8_A          249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP  286 (291)
T ss_dssp             --------------------------------------
T ss_pred             cceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCc
Confidence               2434  56777888775555667778888876654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.63  E-value=1.2e-15  Score=117.57  Aligned_cols=91  Identities=22%  Similarity=0.450  Sum_probs=75.0

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAG  155 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g  155 (626)
                      +|.|+ ..|.++.+.+|++++|.|.+.|.|.|.  |.|+|||..+....       ++.+    ....|.|.+++.+|+|
T Consensus        13 pP~f~-~~p~~~~v~~G~~~~l~C~~~G~P~p~--v~W~k~g~~l~~~~-------~~~~~~~~~~~~L~I~~v~~~D~G   82 (107)
T 3knb_B           13 PPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPV--VVWEKGGQQLAASE-------RLSFPADGAEHGLLLTAALPTDAG   82 (107)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCCCS-------SEECCEETTEEEEEESSCCGGGCE
T ss_pred             CCEEE-eCCCcEEEeCCCcEEEEEEEEEecCCE--EEEEECccccccee-------eEEEeecCceEEEEEecCChhhCE
Confidence            44444 467889999999999999999999874  58999999997652       2222    2347999999999999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      .|+|.|.|..|..+..+.|.|..+|
T Consensus        83 ~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           83 VYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEEEEEECCCEEEEEEEEEEEcCC
Confidence            9999999999999999999998876

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.63  E-value=1e-15  Score=137.77  Aligned_cols=171  Identities=15%  Similarity=0.231  Sum_probs=113.5

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeC--CE---Ec---c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKD--GN---II---G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~--~~---~i---~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  +...+.|+|.  +.   .+   .           ..+|+.+..++     +|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   91 (230)
T 3n9g_H           12 RKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDT   91 (230)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhC
Confidence            5789999999999763  4468999972  11   11   0           13577765544     399999999999


Q ss_pred             EEEEEEEEcCC-----CC---ceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEE
Q psy12061         56 GIYSCTATNVH-----GM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR  123 (626)
Q Consensus        56 G~Y~C~a~n~~-----g~---~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~  123 (626)
                      |.|.|.+.+..     +.   ....+.|.|..    +|.+... +....+..|+.++|.|.+.+.+++.+.+.|  ++..
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~  168 (230)
T 3n9g_H           92 AVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGA  168 (230)
T ss_dssp             EEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEE-CCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGT
T ss_pred             EEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEec-CCCccccCCCCEEEEEEEEeEECCCEEEEE--CCcc
Confidence            99999998864     11   12345777752    3433332 233345689999999999996544578899  5554


Q ss_pred             eccccCC----ccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        124 IGNMDLN----ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       124 ~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +......    ......+. ..+.|.|......| |.|+|.+.+..+.......+.+.
T Consensus       169 ~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          169 LTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             BCTTEEECCCEECTTSCEE-EEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cCCCeEeCCceECCCCCEE-EEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            4321100    00011111 12478999998899 99999999998877666666554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=9.5e-16  Score=117.54  Aligned_cols=80  Identities=28%  Similarity=0.447  Sum_probs=72.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc-CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~-~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+. .+.++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        20 v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           20 LAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             EcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence            4689999999999999999999999999987 467778888889999999999999999999999999989999998654


Q ss_pred             C
Q psy12061         81 P   81 (626)
Q Consensus        81 p   81 (626)
                      |
T Consensus       100 ~  100 (100)
T 2edj_A          100 G  100 (100)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.62  E-value=3.3e-14  Score=123.96  Aligned_cols=184  Identities=13%  Similarity=0.143  Sum_probs=130.1

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEe-----cCCCccceEEEEecCccceEEEeC-CccCceEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK-----EDNPEETAVYYLSRTTRNWALIVG-LQPDTKYY  466 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~-L~p~t~Y~  466 (626)
                      +|.++++...+-. ..|+|+++.....     -..|.|+|..     .+...+.....-.........|++ |..+..|.
T Consensus         9 ~P~nv~~~s~n~~-~iL~W~p~~~~~~-----~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~   82 (206)
T 4doh_B            9 APQQLSVLSTNMK-HLLMWSPVIAPGE-----TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYN   82 (206)
T ss_dssp             CCCCCEEEEETTE-EEEECCCCCCSSS-----CCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEE
T ss_pred             CCCeeEEEEeCCE-EEEEECCCCCCCC-----CEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEE
Confidence            6999999977666 6899999853221     3579999974     344445443333344556677874 77788999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccce
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT  546 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~  546 (626)
                      ++|+|.+..+.|+++....|......-.+|| .+.+. ....++.|.|.  +|    +.+..|.|.|+..+.....  ..
T Consensus        83 ~RVrA~~~~~~S~w~~~~~f~~~~~t~i~PP-~v~v~-~~~~~i~V~~~--~p----~~~l~Y~v~y~~~~~~~~~--~~  152 (206)
T 4doh_B           83 LRVRATLGSQTSAWSILKHPFNRQSTILTRP-GMEIT-KDGFHLVIELE--DL----GPQFEFLVAYWRREPGAEE--HV  152 (206)
T ss_dssp             EEEEEEETTEECCCEECSSCBCGGGCBCCCC-CEEEE-EETTEEEEEEC--CC----CTTCEEEEEEEESSSSCCC--EE
T ss_pred             EEEEEEcCCCccCccccccccchhhcccCCC-eEEEE-eCCCEEEEEec--CC----CCcEEEEEEEEEcCCCcee--EE
Confidence            9999999988888876655544433334456 47676 47789999999  33    5667899999987654221  11


Q ss_pred             eeecCccceEEecCCCCCceEEEEEEEEecC--CCCCCCCCcEEEeecc
Q psy12061        547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNG--GDGRMSSPAITFQMGE  593 (626)
Q Consensus       547 ~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~--G~g~~s~~~~~~~~~~  593 (626)
                      .........+.|.+|+|++.|.|+|+|....  |.|.+|.+ .+|++..
T Consensus       153 ~~~~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~-~C~~t~~  200 (206)
T 4doh_B          153 KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQT-ECVEVQG  200 (206)
T ss_dssp             EEECCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCC-EEECC--
T ss_pred             eEEccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCC-EeEEccc
Confidence            1223345779999999999999999999864  88999954 6787764

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.62  E-value=3.1e-15  Score=119.56  Aligned_cols=112  Identities=22%  Similarity=0.302  Sum_probs=87.1

Q ss_pred             CccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccce--eeecCccceEEe
Q psy12061        481 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT--IIPVGNTLDADI  558 (626)
Q Consensus       481 s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~--~~~~~~~~~~~l  558 (626)
                      |..+.++|.+..|+.+|.++++...+.+++.|+|+++..+..++.|.+|.|+|+..+.........  .....+.+.+.|
T Consensus         3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (122)
T 1va9_A            3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL   82 (122)
T ss_dssp             CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEE
T ss_pred             CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEe
Confidence            456678899999988899999999999999999995333337899999999998766432211111  122346689999


Q ss_pred             cCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        559 VDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       559 ~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      .+|.|++.|.|+|+|+|..|.|++|.++ .+++..
T Consensus        83 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~  116 (122)
T 1va9_A           83 DNLKKFAQYGVVVQAFNRAGTGPSSSEI-NATTLE  116 (122)
T ss_dssp             ESCCSSCCEEEEEEEEETTEECCCCCCE-ECCCCS
T ss_pred             CCCCCCCEEEEEEEEEcCCCCCCCccCE-EEEeCC
Confidence            9999999999999999999999999764 455554

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=8.8e-16  Score=116.81  Aligned_cols=77  Identities=22%  Similarity=0.393  Sum_probs=69.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+  .|.|.|.|+|||.+|..+.|+.+..+|   +|.|.+++.+|+|.|+|.|.|.  .....+.|.|.
T Consensus        19 v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           19 VNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVI   94 (100)
T ss_dssp             EETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEE
T ss_pred             EcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEe
Confidence            5689999999999  789999999999999988999988776   6999999999999999999998  56778899997


Q ss_pred             eCCc
Q psy12061         79 HGPS   82 (626)
Q Consensus        79 ~~p~   82 (626)
                      .+|.
T Consensus        95 ~~P~   98 (100)
T 2yuz_A           95 SGPS   98 (100)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            7663

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.62  E-value=1.7e-15  Score=120.20  Aligned_cols=106  Identities=24%  Similarity=0.377  Sum_probs=89.1

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|..+.++|.+++|. +|.++++...+.+++.|+|+  +|.+.+|.|.+|.|+|+..+....  ..........+.
T Consensus         1 G~g~~S~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~   75 (119)
T 1wfn_A            1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEEYNRTNT--RVTHYLPNVTLE   75 (119)
T ss_dssp             CCCCCSCCCSCCSSCCSCC-CCSCCEEESCCSSEEEEECC--CCTTCCSCCCEEEEEEEESSCGGG--CCCEEECSSCCE
T ss_pred             CCCCCCCCEEEECCCCCCC-CCCceEEEECCCCEEEEEEc--CCCCCCCcEEEEEEEEEECCCCCc--eEEEEeCCCceE
Confidence            6788899999999998886 67899999889999999999  666788999999999887654321  223445568889


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA  586 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~  586 (626)
                      +.|.+|.|++.|.|+|+|+|..|.|++|.++
T Consensus        76 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           76 YRVTGLTALTTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             EEEESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            9999999999999999999999999998654

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.62  E-value=3.9e-15  Score=119.50  Aligned_cols=115  Identities=32%  Similarity=0.484  Sum_probs=93.2

Q ss_pred             CccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc------eEEEEecCcc
Q psy12061        378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET------AVYYLSRTTR  451 (626)
Q Consensus       378 s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~------~~~~~~~~~~  451 (626)
                      |..+.++|.+++|..+|.++++...+.+++.|+|++|.....  +|.|.+|.|+|+........      ..........
T Consensus         2 S~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~--~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (125)
T 1uen_A            2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSI--RGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSK   79 (125)
T ss_dssp             CCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHH--CSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSC
T ss_pred             CccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhc--CceEeEEEEEEEECCCCcccccccccceEEEecCCc
Confidence            345667888899987999999999999999999999854322  37899999999877654321      1222334556


Q ss_pred             ceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       452 ~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      ..+.|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+++|+
T Consensus        80 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  122 (125)
T 1uen_A           80 THGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP  122 (125)
T ss_dssp             SEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCCSS
T ss_pred             cEEEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECCCCCCC
Confidence            7799999999999999999999999999999999999988776

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=3.9e-15  Score=117.93  Aligned_cols=111  Identities=18%  Similarity=0.238  Sum_probs=88.6

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|++|+.+.++|....|. +|.++++...+.+++.|+|+  ++.+.++.|.+|.|+|+.....  ..+ ........+.
T Consensus         1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~sv~l~W~--~p~~~~~~i~~Y~v~~~~~~~~--~~~-~~~~~~~~~~   74 (118)
T 1x3d_A            1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVLEWDEGKGN--GEF-CQCYMGSQKQ   74 (118)
T ss_dssp             CCCCCCCCCCCCCCCSCCC-CCCCCEEEEEETTEEEEECC--CCCCCSSCEEEEEEEECTTTSS--SCC-EEEEEESCSE
T ss_pred             CCCCCCcCEEEEcCCCCCc-CCCCcEEeccCCCEEEEEEC--CCCCCCCcceEEEEEEecCCCC--CCe-EEeeccCCcE
Confidence            6788888899999888775 78899999999999999999  5667788999999988654432  112 2223345688


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.+.+|.|++.|.|+|+|+|..|.|++|.++. +++..
T Consensus        75 ~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~-~~T~~  111 (118)
T 1x3d_A           75 FKITKLSPAMGCKFRLSARNDYGTSGFSEEVL-YYTSG  111 (118)
T ss_dssp             EEEESCCTTCEEEEECCEEESSCBCCCCCCEE-EECSC
T ss_pred             EEeCCCCCCCEEEEEEEEEECCCCCCCccCEE-EEcCC
Confidence            99999999999999999999999999997654 55554

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=131.25  Aligned_cols=179  Identities=17%  Similarity=0.169  Sum_probs=108.6

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeC--CccCceEEEEEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVG--LQPDTKYYVKVM  470 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~v~V~  470 (626)
                      +|.++++...+-..+ |+|+++....    +.+..|.|+|...+...+...............|++  +.++..|.++|+
T Consensus        10 ~P~nv~~~s~n~~~i-L~W~p~~~~~----~~~~~Y~Vqy~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~   84 (211)
T 3g9v_A           10 KPQRVQFQSRNFHNI-LQWQPGRALT----GNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVR   84 (211)
T ss_dssp             CCEEEEEEEETTEEE-EEEECCCC-------CCCEEEEEEEETTCSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEE
T ss_pred             CCceeEEEEEcCceE-EEECCCCCCC----CCCeEEEEEEEECCCCceEECccCCCCCCCEECCCCcccccCccEEEEEE
Confidence            699999987776665 9999987533    225689999987765444432222233344566754  468899999999


Q ss_pred             EeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCC----CCCc--------eeeEEEEEEEecc
Q psy12061        471 AYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF----EEEP--------IIGYKVRVWEVDQ  538 (626)
Q Consensus       471 a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~----~~~~--------i~~Y~i~~~~~~~  538 (626)
                      |.+..+.|+++....|.+......+|| .+.+...+ +++.|.|++  |..    .+|.        ...|.|.|+..+.
T Consensus        85 A~~~~~~S~ws~~~~f~~~~~t~i~PP-~v~v~~~~-~si~V~~~~--P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~  160 (211)
T 3g9v_A           85 AASAGSYSEWSMTPRFTPWWETKIDPP-VMNITQVN-GSLLVILHA--PNLPYRYQKEKNVSIEDYYELLYRVFIINNSL  160 (211)
T ss_dssp             EEETTEECCCEECCCBCHHHHCBCCCC-EEECC------CCCEEEC--CCCGGGGCSSCSSCHHHHTTCEEEEEEC----
T ss_pred             EECCCCcCCCEecCcccccccCccCCC-EEEEEEcC-CEEEEEEEC--CCCccccCCCceeeehhcceeEEEEEEEECCC
Confidence            999999999887777766544555677 48777655 589999995  433    3442        3569999887654


Q ss_pred             CCccccceeeecCccceEEecCCCCCceEEEEEEEEec--CCCCCCCC
Q psy12061        539 DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN--GGDGRMSS  584 (626)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~--~G~g~~s~  584 (626)
                      ..    ...........+.|.+|+|++.|.|+|+|+..  ...|++|.
T Consensus       161 ~~----~~~~~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~  204 (211)
T 3g9v_A          161 EK----EQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSE  204 (211)
T ss_dssp             ------CEEEEEESSCCCC----------CEEEEEEETTTTEECCCCC
T ss_pred             cc----EEEEEecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCC
Confidence            32    12223346678899999999999999999964  23577774

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=6.4e-16  Score=122.59  Aligned_cols=96  Identities=24%  Similarity=0.402  Sum_probs=80.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc-CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~-~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..+. .+.++.+..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        20 v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (118)
T 2eo9_A           20 VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF   99 (118)
T ss_dssp             EETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECC
T ss_pred             EcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeC
Confidence            5689999999999999999999999999986 467888888999999999999999999999999999888899999876


Q ss_pred             Cce-eeeCCCceEEecCC
Q psy12061         81 PSY-YEQLPPKITIAAHR   97 (626)
Q Consensus        81 p~~-~~~~~~~~~v~~g~   97 (626)
                      |.. +...+.+..+.+|.
T Consensus       100 ~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A          100 GVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             SCCCCCCCCCCCCCCCCC
T ss_pred             CCCccCCCCCCCccCCCC
Confidence            533 22334555555553

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=8e-16  Score=124.88  Aligned_cols=124  Identities=27%  Similarity=0.417  Sum_probs=99.5

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|.+|..+.++|.+.+|..+|.++++...+.+++.|+|++|....  .+|.|.+|.|+|+..+..... ..........
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~--~~g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~   77 (132)
T 1x5h_A            1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPAT--QNGQITGYKIRYRKASRKSDV-TETLVSGTQL   77 (132)
T ss_dssp             CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTT--CCSCEEEEBCEEEETTEEEEE-ECCBCCTTCC
T ss_pred             CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcC--CCceEeEEEEEEEECCCCCcc-EEEEeCCCcc
Confidence            6788899999999999998789999999999999999999987532  237799999999876543221 1111345567


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCC------CCCCCCceE
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK------APQKPPSAV  500 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~------~p~~~p~~l  500 (626)
                      .+.|.+|+|++.|.|+|+|.|..|.|++|..+.++|.+.      +|. +|..|
T Consensus        78 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~~~~~~~P~-~P~~l  130 (132)
T 1x5h_A           78 SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPE-VSGPS  130 (132)
T ss_dssp             EEEEECCCSSCEEEEECEEEETTEEEEECCCEEEECCSSCCCCCCCCC-CCCCC
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcCcccCCcccCCC-CCCCC
Confidence            799999999999999999999999999999999999885      554 55454

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.61  E-value=1.5e-14  Score=121.70  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=107.5

Q ss_pred             CCCCceEEEEeeeCCCCCCe-eEEEe--CCEEc-cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPK-FVWKK--DGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~-i~W~~--~~~~i-~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|+++.|+|.+.. +.|. +.|..  ++..+ ..+..     ...|.|.+|+. | |.|.|.+.+........+.|.|
T Consensus        11 V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~~~-----~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V   82 (185)
T 1iam_A           11 LPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNN-----RKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTV   82 (185)
T ss_dssp             EETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSSSS-----EEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEE
T ss_pred             EeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccCCc-----eeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEE
Confidence            578999999999975 4554 67763  22222 11110     12489999984 4 9999999776556777889999


Q ss_pred             EeCCceeeeCCCceEEecCCcEEEEEEecccC-CcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         78 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        78 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      +.+|..+...+....+.+|+.++|.|.+.+.. ...++|+|+|+++.+..... ..  ..   .+..|.+......|...
T Consensus        83 ~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~-~~--~~---~~~tl~~~~~reD~g~~  156 (185)
T 1iam_A           83 YWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-VG--EP---AEVTTTVLVRRDHHGAQ  156 (185)
T ss_dssp             EBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-CT--TT---EEEEEEEECCSSCSSCE
T ss_pred             eCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC-CC--cc---ccEEEEEeceeccCCCe
Confidence            99998887777777799999999999999954 44467899999999875320 00  01   11247766554445559


Q ss_pred             EEEEEEeCCC
Q psy12061        157 YECVVKSTVG  166 (626)
Q Consensus       157 Y~C~a~n~~g  166 (626)
                      |+|.|.|..+
T Consensus       157 ~sC~A~~~l~  166 (185)
T 1iam_A          157 FSCRTELDLR  166 (185)
T ss_dssp             EEEEEEEECG
T ss_pred             EEEEEEecCc
Confidence            9999999876

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.61  E-value=6.7e-16  Score=138.57  Aligned_cols=161  Identities=16%  Similarity=0.191  Sum_probs=101.3

Q ss_pred             CCceEEEEeeeCCCC---C-CeeEEEeCCEEccCCC--cEEEccCC------cEEEccCCCCCCEEEEEEEEcCCCCcee
Q psy12061          4 EGGNVTIFCNPEAAP---K-PKFVWKKDGNIIGSGG--RRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDES   71 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p---~-p~i~W~~~~~~i~~~~--~~~~~~~g------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   71 (626)
                      .|+.++|.|.+.|.+   . .+|.|+|||.++....  ......+|      .|.|.....+|.|.|+|.|.|..+....
T Consensus        38 ~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~  117 (240)
T 4acp_A           38 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI  117 (240)
T ss_dssp             SSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CE
T ss_pred             cCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccc
Confidence            599999999999974   2 3899999999985321  11111222      5888877778999999999998764322


Q ss_pred             eEEE----EEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCc---cCCCeeEecCCeE
Q psy12061         72 KGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLL  144 (626)
Q Consensus        72 ~~~l----~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~l  144 (626)
                      ...+    .+..+|.+...++.... ..|+.++|.|.+.+..++.+.+.|+|||..+.......   ..++.+ ...+.|
T Consensus       118 ~~~i~~~~~~~~~P~V~v~~~~~~~-~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~-~~~s~L  195 (240)
T 4acp_A          118 EKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSF-FLYSKL  195 (240)
T ss_dssp             EEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCE-EEEEEE
T ss_pred             cccccccCCCCCCCEEEEECCChHH-hcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCE-EEEEEE
Confidence            2222    23345665554443322 34999999999999554557889999999875321000   000111 112355


Q ss_pred             EEeecCCCCCEeEEEEEEeCCC
Q psy12061        145 EITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      .|......+.|.|+|.+.+..-
T Consensus       196 ~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          196 TVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEChHHhCCCCEEEEEEEECCC
Confidence            6655555678999999998653

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.60  E-value=7.5e-14  Score=122.46  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=117.4

Q ss_pred             CCCceEEEee-ecceEEEEeeeccccccccceeeE-EEEEEEEecCCCcc----------ceEEEEecCccceEEEeCCc
Q psy12061        393 APQGVFSRGF-NSTAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEE----------TAVYYLSRTTRNWALIVGLQ  460 (626)
Q Consensus       393 ~p~~~~~~~~-~~~si~l~W~~~~~~~~~~~~~i~-~Y~v~~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~  460 (626)
                      .|.++.+... ....+..+|++.....     .-. .|.+.|+.......          ...............+..+.
T Consensus         3 ~~~nlsC~~~~~~~~~~C~W~~g~~~~-----l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~   77 (206)
T 3v6o_A            3 VNINISCETDGYLTKMTCRWSTSTIQS-----LAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIF   77 (206)
T ss_dssp             -CCCCEEEECTTSSCEEEEECCCC-------------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCC
T ss_pred             CCEEEEEEECCCCcEEEEEecCCCcCC-----cccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHH
Confidence            5678888877 5689999999865432     122 58888876542100          01111222333457788888


Q ss_pred             cCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeee-CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccC
Q psy12061        461 PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI-NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD  539 (626)
Q Consensus       461 p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~-~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~  539 (626)
                      ..+.|.|+|.|.|..|.+. |..+.+.....+.+.||.++++... ..+.+.|+|++  |.... .+..|+|+|+..+..
T Consensus        78 ~~~~Y~~~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~--P~~~~-~~l~yev~y~~~~~~  153 (206)
T 3v6o_A           78 LLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEK--PVFPE-NNLQFQIRYGLSGKE  153 (206)
T ss_dssp             TTSCEEEEEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC-----------CEEEEEEEEESSSS
T ss_pred             hcccEEEEEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECC--CCCCC-CcEEEEEEEEECCCC
Confidence            8999999999999988754 5567777676777789999998766 68899999995  33333 457899999876521


Q ss_pred             Cccccceeee-cCccceEEecCCCCCceEEEEEEEEecCCCCCCCCCc
Q psy12061        540 MSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA  586 (626)
Q Consensus       540 ~~~~~~~~~~-~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~  586 (626)
                      .  ....... ......+.+.+|+|++.|.|+|||.+..|.|.||+.+
T Consensus       154 ~--~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS  199 (206)
T 3v6o_A          154 V--QWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWS  199 (206)
T ss_dssp             C--CCEEEEECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCC
T ss_pred             C--ceEEEecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCC
Confidence            1  1222221 2233568999999999999999999988888777654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=6.9e-15  Score=129.56  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=104.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--E---Ec-------cCCCcEEEccC------CcEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--N---II-------GSGGRRKIFEN------GNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~i-------~~~~~~~~~~~------g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      |.+|++|+|.|.+.+.+ +.|.|+|..  .   .+       ...+|+.+..+      .+|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   91 (207)
T 1ypz_E           13 LHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAD   91 (207)
T ss_dssp             EETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence            56899999999998764 589999842  2   12       13467777644      369999999999999999999


Q ss_pred             cCCC---------C--ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc
Q psy12061         64 NVHG---------M--DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL  132 (626)
Q Consensus        64 n~~g---------~--~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~  132 (626)
                      +..+         .  ....+.|.|...+... .+| .+.+..+ .++|.|.+.+.+++.+.+.|+++ ..+....    
T Consensus        92 ~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~-~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~----  163 (207)
T 1ypz_E           92 TWHISEGYELGTDKLVFGQGTQVTVEPKSQPP-AKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFD----  163 (207)
T ss_dssp             CBCCCTTCCCCCCCCEECCCEEEEEECCCCCC-CCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECC----
T ss_pred             cCCcccccccccceeeecCccEEEEccCCCCC-CCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCc----
Confidence            8743         1  1234688886532211 122 3333333 37999999986544467899999 6665321    


Q ss_pred             CCCeeE-ecCCeEEEeecCC-CCCEeEEEEEEeCCCce
Q psy12061        133 ETPNIN-IDGGLLEITNASF-ADAGEYECVVKSTVGKI  168 (626)
Q Consensus       133 ~~~~~~-~~~~~l~i~~~~~-~d~g~Y~C~a~n~~g~~  168 (626)
                        .... ..++.+.+..... .|.|.|+|.+.|..+..
T Consensus       164 --~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          164 --PAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             --CEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             --cceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence              1211 2445666655544 67899999999987654

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.60  E-value=8.6e-16  Score=113.85  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=61.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.+ |.|.|.|+|||.+|..++++.+..+|   +|.|.+++.+|+|.|+|.|.|.    ...+.|.|
T Consensus        18 ~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~ltV   91 (91)
T 2lvc_A           18 AITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVTI   91 (91)
T ss_dssp             CCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEEC
T ss_pred             EECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEEC
Confidence            468999999999976 88999999999999998898888776   5999999999999999999654    56666654

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=1.8e-15  Score=119.44  Aligned_cols=115  Identities=18%  Similarity=0.335  Sum_probs=95.8

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|.+|..+.+.|.+.+|. +|.++++...+.+++.|+|+++..      +.|.+|.|+|+..+.......   ......
T Consensus         1 G~g~~S~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~------~~i~~Y~v~~~~~~~~~~~~~---~~~~~~   70 (115)
T 1x5z_A            1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPRS------DTIANYELVYKDGEHGEEQRI---TIEPGT   70 (115)
T ss_dssp             CCCCCCCCCCCCCCSCCCC-CCEEEEEECSSSSEEEEEEECCSC------CCCCEEEECBEESSSCCCBCC---EECSSS
T ss_pred             CCCCCCCCEEEECCCCCCC-CCccCEeeeCCCCEEEEEEcCCCC------CCccEEEEEEEeCCCCCceEE---ecCCCc
Confidence            5677888888889888887 899999999999999999998863      358899999987765443221   123446


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCC
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP  497 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p  497 (626)
                      .+.|.+|+|++.|.|+|+|.|..|.|++|..+.++|....|+.||
T Consensus        71 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~pp  115 (115)
T 1x5z_A           71 SYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPSSG  115 (115)
T ss_dssp             EEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECCCCCCCCCC
T ss_pred             EEEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecCCCCCCCCC
Confidence            799999999999999999999999999999999999988887654

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.60  E-value=3.9e-14  Score=124.89  Aligned_cols=188  Identities=14%  Similarity=0.158  Sum_probs=130.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCc--cCceEEEEEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQ--PDTKYYVKVM  470 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~v~V~  470 (626)
                      +|+++++...+-..+ |+|+++....    +....|.|+|...+...+.....-.........|+++.  ++..|.++|+
T Consensus        11 ~P~nv~~~s~n~~~i-L~W~p~~~~~----~~~~~Y~Vqy~~~~~~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~   85 (221)
T 4doh_R           11 KPANITFLSINMKNV-LQWTPPEGLQ----GVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVR   85 (221)
T ss_dssp             CCEEEEEEEETTEEE-EEEECCCCSS----CCCCEEEEEEEETTSCCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEE
T ss_pred             CCceeEEEEECCcEE-EEEcCCCCCC----CCCeEEEEEEEECCCCCceecccccCCCCCEEeCCCccccCCCCEEEEEE
Confidence            689999998766664 9999975421    34668999998655443322111122344567788764  5678999999


Q ss_pred             EeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCC--CCCCc---------eeeEEEEEEEeccC
Q psy12061        471 AYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS--FEEEP---------IIGYKVRVWEVDQD  539 (626)
Q Consensus       471 a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~--~~~~~---------i~~Y~i~~~~~~~~  539 (626)
                      |.+..+.|.++....|........+||. +.+. ...+++.|.|.+|...  .+++.         ...|.|.|+..+..
T Consensus        86 A~~g~~~S~w~~~~~F~p~~~t~igPP~-v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~~  163 (221)
T 4doh_R           86 AIWGTKCSKWAESGRFYPFLETQIGPPE-VALT-TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSN  163 (221)
T ss_dssp             EESSSCBCCCEECCCBCHHHHCBCCCCE-EEEE-CCSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTTT
T ss_pred             EEcCCcccCCEecCceechhhCccCCCE-EEEE-ECCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCCC
Confidence            9998888888877667655555566775 8777 4668999999953321  12231         24799999987554


Q ss_pred             CccccceeeecCccceEEecCCCCCceEEEEEEEEec--CCCCCCCCCcEEEeecc
Q psy12061        540 MSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN--GGDGRMSSPAITFQMGE  593 (626)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~--~G~g~~s~~~~~~~~~~  593 (626)
                      ..  . ..  ......+.|.+|+|++.|.|+|+|...  .|.|.+|.+ +++++.+
T Consensus       164 ~~--~-~~--~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~-~c~~T~~  213 (221)
T 4doh_R          164 RT--W-SQ--CVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEK-QCARTLK  213 (221)
T ss_dssp             EE--E-EE--EECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEE-EEEECCC
T ss_pred             cE--E-EE--eecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCC-EeEecCC
Confidence            21  1 11  123467899999999999999999975  689999954 6777764

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=3.2e-15  Score=119.24  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=85.2

Q ss_pred             CCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceee---ecCccc
Q psy12061        478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII---PVGNTL  554 (626)
Q Consensus       478 s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~---~~~~~~  554 (626)
                      +..+..+...+..+.| .+|.++++..++.+++.|+|.  ++.+++++|.+|.|+|+.........+..+.   .....+
T Consensus         3 ~~~s~~~~~~~~~~~P-~~P~~l~~~~~~~~sv~l~W~--p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~   79 (124)
T 1wis_A            3 SGSSGTISSGVPPELP-GPPTNLGISNIGPRSVTLQFR--PGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDAR   79 (124)
T ss_dssp             CCCSCCCCSCCCCCCC-CCCEEEEEESCCSSCEEEEEE--CCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCS
T ss_pred             CCccccccccCCCCCC-ccCCCCEEEEecCCEEEEEEE--CCCCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCce
Confidence            3344455555555655 589999999889999999998  6778889999999998763111111122221   246778


Q ss_pred             eEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       555 ~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      .+.+.+|.|++.|.|+|+|.|..|.|++|.+...+++.+.
T Consensus        80 ~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T~~~  119 (124)
T 1wis_A           80 SMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQS  119 (124)
T ss_dssp             EEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEECCCS
T ss_pred             EEEeCCCCCCCEEEEEEEEEECCccCCCcCCccceEcCCC
Confidence            9999999999999999999999999999987766776643

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=113.37  Aligned_cols=102  Identities=18%  Similarity=0.287  Sum_probs=80.0

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCce
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      +|.+.+|+ +|.++++...+.+++.|+|+  +|...+|.|.+|.|+|+..+.......  .......+.+.|.+|.|++.
T Consensus         2 tT~~~~P~-~p~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~   76 (109)
T 2e7h_A            2 SSGSSGPP-AVSDIRVTRSSPSSLSLAWA--VPRAPSGAVLDYEVKYHEKGAEGPSSV--RFLKTSENRAELRGLKRGAS   76 (109)
T ss_dssp             CSSCCSSC-CCCCCEEEEEETTEEEEECC--CCCCSSSCCCEEEEEEEETTCCSTTTS--EEEEESSSEEEEESCCTTSC
T ss_pred             CCCCCCCC-CCCccEEEecCCCEEEEEeC--CCCCCCCcEeEEEEEEEECCCCCCcee--EEEccCCCEEEECCCCCCCe
Confidence            45666776 67899999999999999999  566788999999999987652211111  12234567999999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        567 YHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       567 Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      |.|+|+|+|.+|.|++|.+ +.+++.+.
T Consensus        77 Y~~~V~A~n~~G~g~~S~~-~~~~T~~~  103 (109)
T 2e7h_A           77 YLVQVRARSEAGYGPFGQE-HHSQTQLD  103 (109)
T ss_dssp             EEEEEEEECSSCBCCCCSC-EECCCCCC
T ss_pred             EEEEEEEEeCCccCCCCCC-EEEEcCCC
Confidence            9999999999999999965 45766653

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.59  E-value=4.5e-15  Score=117.12  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|+.|..+.++|.+..|. +|.++++...+.+++.|+|+  ++..  +.|.+|.|+|+..+....    ........+.
T Consensus         1 G~g~~S~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~--~~i~~Y~v~~~~~~~~~~----~~~~~~~~~~   71 (115)
T 1x5z_A            1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWT--PPRS--DTIANYELVYKDGEHGEE----QRITIEPGTS   71 (115)
T ss_dssp             CCCCCCCCCCCCCCSCCCC-CCEEEEEECSSSSEEEEEEE--CCSC--CCCCEEEECBEESSSCCC----BCCEECSSSE
T ss_pred             CCCCCCCCEEEECCCCCCC-CCccCEeeeCCCCEEEEEEc--CCCC--CCccEEEEEEEeCCCCCc----eEEecCCCcE
Confidence            6788888899999988886 88999999889999999999  4543  488999999887654322    2223345689


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +.|.+|+|++.|.|+|+|+|..|.|++|.++ .+++...
T Consensus        72 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~~  109 (115)
T 1x5z_A           72 YRLQGLKPNSLYYFRLAARSPQGLGASTAEI-SARTMQS  109 (115)
T ss_dssp             EEEECCCTTCEEEECEEEECSSCEEEECCCE-EEECCCC
T ss_pred             EEECCCCCCCeEEEEEEEECCCcccCCCcCE-EEecCCC
Confidence            9999999999999999999999999999664 4666543

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.59  E-value=3e-14  Score=127.36  Aligned_cols=188  Identities=14%  Similarity=0.099  Sum_probs=123.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEE--Ee--cCccceEE--EeCCccCceEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY--LS--RTTRNWAL--IVGLQPDTKYY  466 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~--~~~~~~~~--i~~L~p~t~Y~  466 (626)
                      +|.++.+...+...+.++|+++....    +...+|.|.|+..+.........  ..  ........  ..++..++.|.
T Consensus        23 ~P~nl~C~~~~~~~l~C~W~~~~~~~----~~~~~y~l~y~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~   98 (227)
T 1eer_B           23 GPEELLCFTERLEDLVCFWEEAASAG----VGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLE   98 (227)
T ss_dssp             STTSCEEEBSSSSCCEEEEEESCCSS----CCTTSEEEEEEETTSCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEE
T ss_pred             CCcCCeEECCCCCEEEEEecCCCCCC----CCCccEEEEEEcCCCCceeccceeccCCCCCceEEEEeCCCcceeeEEEE
Confidence            68899999988899999999987432    23568999997653221111011  00  11112222  34778899999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCCCCCceEEEeeeC-CCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN-PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND  545 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~-~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~  545 (626)
                      |+|.|.+..+    .....+.+.+.+++.||.++++...+ .+.+.|+|++|.....++ +..|+|+|+..+.....  .
T Consensus        99 ~~V~a~~~~~----~~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~-~l~Yev~y~~~~~~~w~--~  171 (227)
T 1eer_B           99 LRVTAASGAP----RYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTS-HIRYEVDVSAGQGAGSV--Q  171 (227)
T ss_dssp             EEEEETTSCE----EEEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGG-GEEEEEEEECCSSSCCC--C
T ss_pred             EEEEecCCCc----cEEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCccccc-ceEEEEEEEcCCCCCcE--E
Confidence            9999965322    22234556666667799999998764 789999999533222223 67899999865443221  1


Q ss_pred             eeeecCccceEEecCCCCCceEEEEEEEEecC----C-CCCCCCCcEEEeec
Q psy12061        546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNG----G-DGRMSSPAITFQMG  592 (626)
Q Consensus       546 ~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~----G-~g~~s~~~~~~~~~  592 (626)
                      ........+.+.|.+|.|++.|.|+|+|....    | .|+||.+. .+.+.
T Consensus       172 ~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~-~~~t~  222 (227)
T 1eer_B          172 RVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPV-SLLTP  222 (227)
T ss_dssp             EEEECTTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCE-EEEC-
T ss_pred             EEEEecCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCE-EEECc
Confidence            12334467889999999999999999999752    3 38888654 46553

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.6e-14  Score=114.41  Aligned_cols=116  Identities=20%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             CCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEE
Q psy12061        377 ESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALI  456 (626)
Q Consensus       377 ~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i  456 (626)
                      .|....+.+....|+.+|.++++...+.++|.|+|.++........+.+.+|+|+|+..+........  .......++|
T Consensus         5 ~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~--~~~~~~~~~v   82 (123)
T 2edd_A            5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKS--EDTTSLSYTA   82 (123)
T ss_dssp             CSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCCCCC--EEESSSEEEE
T ss_pred             cCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCccEEE--EeCCceEEEe
Confidence            34555556666677779999999999999999999977543322112344999999887432221111  1223567999


Q ss_pred             eCCccCceEEEEEEEeeCCCCCCCCccEEEeecCC-CCC
Q psy12061        457 VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK-APQ  494 (626)
Q Consensus       457 ~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~-~p~  494 (626)
                      .+|+|++.|.|+|+|+|..|.|++|..+.++|.+. +|.
T Consensus        83 ~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~~~~~Ps  121 (123)
T 2edd_A           83 TGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPS  121 (123)
T ss_dssp             ESCCTTCEEEEEEEECCSSSCCCCCCCEEEECCCSSSCC
T ss_pred             cCCCCCCEEEEEEEEeCCCcccCCCCCEEEEccCCCCCC
Confidence            99999999999999999999999999999999988 775

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C

Probab=99.59  E-value=2.3e-12  Score=119.79  Aligned_cols=277  Identities=12%  Similarity=0.029  Sum_probs=168.7

Q ss_pred             CCCCCCceEEEEEeccceEEEEecC-CCCC-CcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCc
Q psy12061        179 PPGLPGGVQVVEVHKTSATIQWTDG-ATNG-RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS  256 (626)
Q Consensus       179 ~P~~p~~~~~~~~~~~~~~l~W~~~-~~~~-~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  256 (626)
                      ...||.++.+...+...+.|+|+++ ...+ .....|.+.++..+...|......             .... ..|..+ 
T Consensus        11 ~~~pP~nl~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~~w~~~~t~-------------~~~~-~~L~~~-   75 (317)
T 3qt2_A           11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITE-------------SKAV-TILHMG-   75 (317)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCEEEEESSSE-------------EEEE-CCCTTC-
T ss_pred             ccCCCcceEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCcccEeeccc-------------cccc-cccCCC-
Confidence            4678999999888889999999984 3322 335789999998888888865421             1112 226544 


Q ss_pred             eEEEEEEEecCCccCC-CCCCCC-cccCCCCCCCCCCceeEeecCC-----------cCeEEEEEeeCCCCCcccCcceE
Q psy12061        257 TYEFKVIAGNELGYGE-PSSPSP-QYNTPADKPYQAPSRIGGGGGK-----------IGDLSISWEPLPREKQNAPNIYY  323 (626)
Q Consensus       257 ~y~~~v~a~n~~g~~~-~s~~~~-~~~~~~~~p~~~p~~~~~~~~~-----------~~~v~l~W~~~~~~~~~~~~~~y  323 (626)
                       |.++|++.+..|.+. +|..+. ....++..|+..|.+++.....           ...+++.|++  ..+ ......|
T Consensus        76 -~~~rVrt~~~~~~s~~~S~w~~~~~~~~~G~p~~~p~nlsC~~~~~~~~~~~~~~~~~~l~CtW~p--G~~-~~~~t~Y  151 (317)
T 3qt2_A           76 -FSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMV--GTD-APEDTQY  151 (317)
T ss_dssp             -EEEEEEEEEECSSCEEECCCEEEEECCCSCBGGGSCEEEEEEEEEEECSCSSSCCEEEEEEEEEEC--CTT-CCTTCEE
T ss_pred             -eEEEEEEEECCCCCccccccccccccCCCCCCCCcceeeEEEEccccccccccccccceEEEEeeC--CCC-CCCCeeE
Confidence             889998877655322 333322 2223345556778899876554           4789999998  222 2335679


Q ss_pred             EEEEEecCCCcceeeeeeeecce-eeEEEEeCCCc----ceeEEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceE
Q psy12061        324 KIFWRKKNDTEFQSETLKEYGNV-GIAVVRIPSEF----YYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVF  398 (626)
Q Consensus       324 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~----p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~  398 (626)
                      .+.|+..+  .+..+..-..... ....+.+....    ....|.|.|.+.+..+.-. +....+.....+.+.||.++.
T Consensus       152 ~L~y~~~~--~~~eC~~y~~~~~~~~~~C~f~~~~~~~~~~~~~~i~V~gss~~~~i~-s~~~~~~l~~iVkp~PP~nL~  228 (317)
T 3qt2_A          152 FLYYRYGS--WTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIR-PFDQLFALHAIDQINPPLNVT  228 (317)
T ss_dssp             EEEEEETT--EEEECCCEEECTTSCEEEEEESSCSCCTTCCSEEEEEEEEECTTSCBC-CEEEEEEHHHHBCCCCCEEEE
T ss_pred             EEEEEeCC--CCeeCCccccCCCcceeEEEeCCccccccCcEEEEEEEEcCCCCcccc-ccceEEEHHHcCcCCCCceeE
Confidence            99998764  2333221111111 12344454432    2467888988776544422 222333333333334888998


Q ss_pred             EEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCC---
Q psy12061        399 SRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA---  475 (626)
Q Consensus       399 ~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~---  475 (626)
                      +.. ..+.+.|+|++|...-   ...-..|+|+|+...........  .  ....+.+ +|.|++.|.|+|+|....   
T Consensus       229 v~~-~~~~l~v~W~~P~~~~---~~~~L~Yevryr~~~~~~~~~~~--~--~~~~~~l-~l~p~~~Y~vqVR~k~~~~~~  299 (317)
T 3qt2_A          229 AEI-EGTRMSIQWEKPVSAF---PIHCFDYEVKIHNTRNGYLQIEK--L--MTNAFIS-IIDDLSKYDVQVRAAVSSMCR  299 (317)
T ss_dssp             EEE-ETTEEEEEEECCSSSS---CGGGEEEEEEEEETTTCCEEEEE--E--SSSEEEE-ECCTTCCEEEEEEEEECTTTS
T ss_pred             EEE-eCCcEEEEECCCCccc---ccCceEEEEEEEeCCCCcceEEE--E--eeeEEEe-ecCCCCEEEEEEEEeecCCCC
Confidence            884 4679999999875321   11246899999876543322211  1  2344555 599999999999998542   


Q ss_pred             --C-CCCCCccEEE
Q psy12061        476 --G-EGPESERYLE  486 (626)
Q Consensus       476 --g-~s~~s~~~~~  486 (626)
                        | .|++|..+.+
T Consensus       300 ~~g~WSeWS~~~~~  313 (317)
T 3qt2_A          300 EAGLWSEWSQPIYV  313 (317)
T ss_dssp             SCCCCCCCCCCEEE
T ss_pred             CCCCcCCCCCCEEE
Confidence              2 3456655544

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.1e-14  Score=115.77  Aligned_cols=111  Identities=25%  Similarity=0.310  Sum_probs=86.1

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEe-eeCCCEEEEEEeecCCCCC-CCceeeEEEEEEEeccCCccccceeeecCcc
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIK-GINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNT  553 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~-~~~~~~~~l~W~~~~~~~~-~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~  553 (626)
                      |.|++|+.+.+.|....|. +|.++.+. ..+.+++.|+|+  +|.+. +..|.+|.|+|+......   .+........
T Consensus         1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~~sv~l~W~--~p~~~gg~~i~~Y~v~~~~~~~~~---~~~~~~~~~~   74 (120)
T 2crm_A            1 GSSGSSGVVEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWD--PPKDNGGATINKYVVEMAEGSNGN---KWEMIYSGAT   74 (120)
T ss_dssp             CCCTTCSCCSCCSCCCCCC-CCCCCEEEEEEETTEEEEECC--CCTTCCSSCCCEEEEEEEESSSSC---CCEEEECSSC
T ss_pred             CCCCCcCCEEEEeCCCCCC-CCCCCEEeeccCCCEEEEEEC--CCCcCCCCeeeEEEEEEccCCCCc---CCEEEEeccc
Confidence            6788999998998888775 66677766 678899999999  45544 458999999987654321   2223334568


Q ss_pred             ceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       554 ~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.+.+.+|.|++.|.|+|+|+|..|.|++|+++ .+++..
T Consensus        75 ~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~-~~~T~~  113 (120)
T 2crm_A           75 REHLCDRLNPGCFYRLRVYCISDGGQSAVSESL-LVQTPA  113 (120)
T ss_dssp             SEEEECSCCTTSCEEEEEEEEETTEECCCCCCC-CCCCCC
T ss_pred             cEEEECCCCCCCEEEEEEEEEcCCccCCCcccE-EEEcCC
Confidence            899999999999999999999999999999664 455554

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.58  E-value=9.5e-15  Score=133.83  Aligned_cols=170  Identities=16%  Similarity=0.256  Sum_probs=108.2

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeC--CE---Ec--------------cCCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKD--GN---II--------------GSGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~--~~---~i--------------~~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  ....+.|+|.  +.   .+              ...+|+.+..++     +|.|.+++.+|+
T Consensus        35 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds  114 (256)
T 3sob_H           35 VQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDT  114 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccC
Confidence            5789999999999764  3468999973  21   11              012567665443     399999999999


Q ss_pred             EEEEEEEEcCCC-----------CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC
Q psy12061         56 GIYSCTATNVHG-----------MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN  120 (626)
Q Consensus        56 G~Y~C~a~n~~g-----------~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~  120 (626)
                      |.|.|.+.+..+           .......|.|..    +|.+....+ ...+..|+.++|.|.+.+..++.+.+.|  +
T Consensus       115 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~  191 (256)
T 3sob_H          115 AVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSW--N  191 (256)
T ss_dssp             EEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC-C-----TTEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             EEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC-CcccccCCcEEEEEEEEEEECCCeEEEE--C
Confidence            999999987532           122345677753    333333323 3345789999999999985544567899  5


Q ss_pred             CEEeccccC----CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        121 GVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       121 ~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +..+.....    .......+. ..+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          192 SGALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             GGTBCTTEEECCCEECTTSCEE-EEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CcccCCCeEeCCceeCCCCCEE-EEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            444432100    000011111 12478899998899 9999999999887666665544

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.3e-14  Score=115.49  Aligned_cols=111  Identities=20%  Similarity=0.257  Sum_probs=86.1

Q ss_pred             CCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCC-CCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        477 EGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS-FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       477 ~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      .+..+....+.|.+..|. +|.++++...+.+++.|+|+  +|. +.++.|.+|.|+|+..+....  ..........+.
T Consensus         2 ~sgss~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~~~g~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~   76 (120)
T 1x5f_A            2 SSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWR--TPASDPHGDNLTYSVFYTKEGIARE--RVENTSHPGEMQ   76 (120)
T ss_dssp             CCCCCSSCCCCCCCCCCC-CCEEEEEEEECSSCEEEEEE--CCSSCSSCCSSEEEEEEEETTCCCC--EEEECSSTTCSE
T ss_pred             CCCCCCCEEecCCCCCCC-CCCCcEEEecCCCEEEEEEC--CCCCCCCCcEEEEEEEEEECCCCCc--eEEEeccCCccE
Confidence            344455566778877774 88999999999999999999  555 778899999999877643321  112233456889


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.|.+|+|++.|.|+|+|+|..|.|++|.++ .+++.+
T Consensus        77 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~  113 (120)
T 1x5f_A           77 VTIQNLMPATVYIFRVMAQNKHGSGESSAPL-RVETQP  113 (120)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSCEEEECCCE-EEECCC
T ss_pred             EEeCCCCCCCEEEEEEEEECCCccCCCCCCE-EEEeCC
Confidence            9999999999999999999999999999764 466643

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=9e-15  Score=115.06  Aligned_cols=97  Identities=19%  Similarity=0.324  Sum_probs=80.9

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec----CCeEEEeecCCCCCEe
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID----GGLLEITNASFADAGE  156 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~  156 (626)
                      |+.+...|....+.+|++++|.|.+.+.|.|  .+.|+|++..+...       .++.+.    ...|.|.+++.+|+|.
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~~~~~~~~-------~~~~~~~~~~~~~L~I~~v~~~D~G~   77 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQES-------EHMKVENSENGSKLTILAARQEHCGC   77 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSC--EEEEEESSSBCCCS-------SSEEEEECSSEEEEEETTCCTTTCEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC--EEEEEECCEECcCC-------CCEEEEEcCCEEEEEECCCChhcCEE
Confidence            3344457888999999999999999999886  45899999888654       233332    4689999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCCCCCCCce
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGPPGLPGGV  186 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~  186 (626)
                      |+|.|.|..|..+..+.|.|..+|.+|..+
T Consensus        78 Y~C~a~N~~g~~~~~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           78 YTLLVENKLGSRQAQVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             EEEEEECSSCEEECCEEEEEECSCSCCCCC
T ss_pred             EEEEEEECCCcEEEEEEEEEECCCCCCCCC
Confidence            999999999999999999999998887654

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.58  E-value=4.3e-14  Score=124.58  Aligned_cols=192  Identities=16%  Similarity=0.198  Sum_probs=135.0

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCc--ceeEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF--YYTEYEVKV  366 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--p~~~Y~~~v  366 (626)
                      .+|.++++..... ...|+|++  +...++....|.|+|+..+...|.....  ..+.....+.++++.  +...|.+||
T Consensus        10 p~P~nv~~~s~n~-~~iL~W~p--~~~~~~~~~~Y~Vqy~~~~~~~W~~~~~--C~~~~~~~Cdlt~~~~~~~~~Y~~RV   84 (221)
T 4doh_R           10 PKPANITFLSINM-KNVLQWTP--PEGLQGVKVTYTVQYFIYGQKKWLNKSE--CRNINRTYCDLSAETSDYEHQYYARV   84 (221)
T ss_dssp             -CCEEEEEEEETT-EEEEEEEC--CCCSSCCCCEEEEEEEETTSCCCEECGG--GSSBSSSEEECTTTTCCSSCCEEEEE
T ss_pred             CCCceeEEEEECC-cEEEEEcC--CCCCCCCCeEEEEEEEECCCCCceeccc--ccCCCCCEEeCCCccccCCCCEEEEE
Confidence            4688999987654 44699998  3333466789999999877677865322  223345567777753  567899999


Q ss_pred             EEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeecccccccccee---------eEEEEEEEEecCC
Q psy12061        367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR---------LIGHRIKYWKEDN  437 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~---------i~~Y~v~~~~~~~  437 (626)
                      +|.+..+.+.|+....+........+||. +.+. ...++|.|.|.+|.....+.+|.         ...|.|.||+.+.
T Consensus        85 ~A~~g~~~S~w~~~~~F~p~~~t~igPP~-v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~  162 (221)
T 4doh_R           85 RAIWGTKCSKWAESGRFYPFLETQIGPPE-VALT-TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKS  162 (221)
T ss_dssp             EEESSSCBCCCEECCCBCHHHHCBCCCCE-EEEE-CCSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTT
T ss_pred             EEEcCCcccCCEecCceechhhCccCCCE-EEEE-ECCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCC
Confidence            99998888887765555544344444674 8777 56789999999887431110110         3589999998865


Q ss_pred             CccceEEEEecCccceEEEeCCccCceEEEEEEEeeC--CCCCCCCccEEEeecCC
Q psy12061        438 PEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN--AGEGPESERYLERTYRK  491 (626)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~--~g~s~~s~~~~~~t~~~  491 (626)
                      .....  ..  .....+.|.+|+|++.|.|+|+|...  .|.|.+|....+.|..+
T Consensus       163 ~~~~~--~~--~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~d  214 (221)
T 4doh_R          163 NRTWS--QC--VTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD  214 (221)
T ss_dssp             TEEEE--EE--ECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECCCC
T ss_pred             CcEEE--Ee--ecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecCCC
Confidence            53321  11  23356889999999999999999975  68899999888888754

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.58  E-value=2.1e-14  Score=127.62  Aligned_cols=170  Identities=19%  Similarity=0.302  Sum_probs=109.6

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cC--CeEEEeecCC-CCC
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DG--GLLEITNASF-ADA  154 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~--~~l~i~~~~~-~d~  154 (626)
                      |+.+...|.+..+.+|++++|.|.+.+.|.+  .+.|+++|..+....      .++..   .+  ..|.|.+++. .|+
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~d~   77 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPP--SIVWRKNGKKVSGTQ------SRYTVLEQPGGISILRIEPVRAGRDD   77 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEECCTTS------TTEEEEEETTTEEEEEESSCCTTTTC
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCC--eEEEEECCEECCCCc------ceeEEEEcCCCeEEEEEEecCCCCcC
Confidence            3344446788999999999999999998876  569999999986321      23222   22  4899999999 999


Q ss_pred             EeEEEEEEeCCCc-eEEEEEEEEeCCCCCCCc-eEE-------EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCc
Q psy12061        155 GEYECVVKSTVGK-ISTKTTVIVEGPPGLPGG-VQV-------VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW  225 (626)
Q Consensus       155 g~Y~C~a~n~~g~-~~~~~~l~v~~~P~~p~~-~~~-------~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w  225 (626)
                      |.|+|.+.|..|. .+..+.|.|..++..|.. +.+       .......+.|.|....   .+...  +.        |
T Consensus        78 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g---~p~p~--i~--------W  144 (212)
T 2yd1_A           78 APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG---NPTPN--IY--------W  144 (212)
T ss_dssp             SEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEEC---SSCCE--EE--------E
T ss_pred             ceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEecc---CCCCe--EE--------E
Confidence            9999999999998 788899999876443211 111       1123455666666421   11111  22        3


Q ss_pred             eEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccCC
Q psy12061        226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE  272 (626)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~  272 (626)
                      .+....+.............+.+.+ +...+.+.|+|.|.|..|...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~  190 (212)
T 2yd1_A          145 IKNQTKVDMSNPRYSLKDGFLQIEN-SREEDQGKYECVAENSMGTEH  190 (212)
T ss_dssp             EETTEECCTTSTTEEEETTEEEECS-CCGGGCEEEEEEEEETTEEEE
T ss_pred             EECCeEcccCCCeEEccCCeEEEcc-CChhhCEEEEEEeecCCCcee
Confidence            3322211100000000112456655 899999999999999998653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.58  E-value=6.7e-15  Score=111.90  Aligned_cols=89  Identities=22%  Similarity=0.363  Sum_probs=73.8

Q ss_pred             eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEE
Q psy12061         83 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYE  158 (626)
Q Consensus        83 ~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .+...|.++.+.+|++++|.|.+.|.|.|.  +.|+|||..+....     ..++.+    ....|.|.+++.+|+|.|+
T Consensus         7 ~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~--v~W~k~g~~i~~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            7 KIEALPSDISIDEGKVLTVACAFTGEPTPE--VTWSCGGRKIHSQE-----QGRFHIENTDDLTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             EECCCCSEEEEETTSEEEEEEEEEEESCCE--EEEEETTEECCTTG-----GGTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             EEEeCCCcEEEeCCCeEEEEEEEEEecCCE--EEEEECceEeeeec-----cceeeeecccceEEEEEcCCCccCCEEEE
Confidence            344568899999999999999999999875  58999999987542     123332    2247999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEeC
Q psy12061        159 CVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |.|.|..|..+..+.|.|+.
T Consensus        80 C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           80 LSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEEE
Confidence            99999999999999999874

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.58  E-value=4e-15  Score=114.82  Aligned_cols=79  Identities=24%  Similarity=0.346  Sum_probs=71.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..+..+.++.+..++   +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        20 v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           20 VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             EETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            468999999999999999999999999999888888776654   59999999999999999999999999989999885


Q ss_pred             eC
Q psy12061         79 HG   80 (626)
Q Consensus        79 ~~   80 (626)
                      ..
T Consensus       100 ~~  101 (103)
T 3qp3_A          100 GG  101 (103)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.58  E-value=8.3e-15  Score=111.45  Aligned_cols=77  Identities=27%  Similarity=0.472  Sum_probs=69.4

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEc-cCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF-ENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~-~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|. |.|.|.|+|++..+..+.++.+. .++  +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        13 v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             ECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence            5789999999999997 99999999999999888888773 445  7999999999999999999999999888888887


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus        93 ~   93 (97)
T 2bk8_A           93 K   93 (97)
T ss_dssp             T
T ss_pred             E
Confidence            4

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.58  E-value=4.3e-15  Score=116.94  Aligned_cols=81  Identities=31%  Similarity=0.599  Sum_probs=72.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCC----cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+.. ..++.+..++    +|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        27 v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  106 (116)
T 2kkq_A           27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD  106 (116)
T ss_dssp             EETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEE
Confidence            56899999999999999999999999999974 5677776554    799999999999999999999999998999999


Q ss_pred             EEeCCc
Q psy12061         77 VLHGPS   82 (626)
Q Consensus        77 v~~~p~   82 (626)
                      |..+|.
T Consensus       107 V~~~p~  112 (116)
T 2kkq_A          107 VTARPN  112 (116)
T ss_dssp             EECCSC
T ss_pred             EeCCCC
Confidence            987664

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.58  E-value=4.1e-15  Score=111.12  Aligned_cols=73  Identities=22%  Similarity=0.251  Sum_probs=63.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      |.+|++++|.|.+.+ |+|.|.|+|||.+|..+.|+.+..+|   +|.|.+++.+|+|.|+|.|.|.    ..++.|.|.
T Consensus        17 v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           17 VFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAANLKVK   91 (93)
T ss_dssp             EETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEEEEEEE
T ss_pred             EeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEEEEEEE
Confidence            568999999999987 45899999999999988898887766   6999999999999999999874    567888885


Q ss_pred             e
Q psy12061         79 H   79 (626)
Q Consensus        79 ~   79 (626)
                      .
T Consensus        92 ~   92 (93)
T 1waa_A           92 E   92 (93)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.4e-14  Score=114.47  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=85.0

Q ss_pred             CCCCccEEEeec-C-CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        478 GPESERYLERTY-R-KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       478 s~~s~~~~~~t~-~-~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |+.|..+.++|. + ..| .+|.++++...+.+++.|+|+  +|...++.|.+|.|+|+..+....     .......+.
T Consensus         1 G~~S~~~~~~T~~~~~~P-~~P~~l~~~~~~~~si~l~W~--~p~~~~~~i~~Y~v~~~~~~~~~~-----~~~~~~~~~   72 (116)
T 1x5g_A            1 GSSGSSGRVETQPEVQLP-GPAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYMEKGTDKE-----QDVDVSSHS   72 (116)
T ss_dssp             CCCCCCCCCSSCCCSSCC-CCCSSCEEEEEETTEEEEECC--CCSCCSSCCSEEEEEEEETTCCCC-----CCEEECSSE
T ss_pred             CCCccCeEEEcCCCCCCC-cCCCccEEEecCCCEEEEEEe--CCCCCCCcccEEEEEEEECCCCcc-----EEEecCCce
Confidence            466777888885 3 445 588899999999999999999  566678899999999887654322     122335789


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +.|.+|+|++.|.|+|+|+|..|.|++|.++. +++.+
T Consensus        73 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~-~~T~~  109 (116)
T 1x5g_A           73 YTINGLKKYTEYSFRVVAYNKHGPGVSTPDVA-VRTLS  109 (116)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSCCCCBCCCCC-EECCC
T ss_pred             EEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEE-EECCC
Confidence            99999999999999999999999999997654 55554

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.6e-14  Score=112.33  Aligned_cols=101  Identities=22%  Similarity=0.367  Sum_probs=81.3

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCce
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      +|.+.+|. +|.++++...+.+++.|+|+  +|...+|.|.+|.|+|+..+...   ..........+.+.|.+|.|++.
T Consensus         2 tT~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~t~   75 (108)
T 2djs_A            2 SSGSSGPS-TVPIMHQVSATMRSITLSWP--QPEQPNGIILDYEIRYYEKEHNE---FNSSMARSQTNTARIDGLRPGMV   75 (108)
T ss_dssp             CSCCCCCC-CCSCCEEEEECSSEEEEECC--CCSCCSSCEEEEEEEEEETTSCS---TTCEEEEESSSEEEEESCCTTCE
T ss_pred             ccCCCCCC-CCcceEEEecCCCEEEEEEC--CCCCCCCeEEEEEEEEEECCCCC---cceeEEecCccEEEEcCCCCCCE
Confidence            45666776 77899999999999999999  66778899999999988765432   11233446778999999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        567 YHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       567 Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      |.|+|+|+|..|.|++|.++ .+++.+.
T Consensus        76 Y~~~V~A~n~~G~g~~S~~~-~~~T~~~  102 (108)
T 2djs_A           76 YVVQVRARTVAGYGKFSGKM-CFQTLTD  102 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCE-EEECCCS
T ss_pred             EEEEEEEEeCCEECCCCCCE-EEEeCCC
Confidence            99999999999999999664 5666643

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=8.5e-15  Score=115.99  Aligned_cols=79  Identities=20%  Similarity=0.357  Sum_probs=68.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-CC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+. ..++.+.. ++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        36 v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           36 RKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV  114 (118)
T ss_dssp             EESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEE
T ss_pred             EECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            4689999999999999999999999999997 34555443 23  49999999999999999999999998889999997


Q ss_pred             eCC
Q psy12061         79 HGP   81 (626)
Q Consensus        79 ~~p   81 (626)
                      ..|
T Consensus       115 ~~P  117 (118)
T 2e7c_A          115 EKA  117 (118)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            765

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=5.6e-15  Score=113.06  Aligned_cols=77  Identities=27%  Similarity=0.436  Sum_probs=68.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc--cCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~--~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+.++.+.  .++  +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        17 v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1g1c_A           17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   96 (99)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEE
Confidence            468999999999999999999999999999877776654  233  6999999999999999999999999998888888


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus        97 ~   97 (99)
T 1g1c_A           97 Q   97 (99)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=6.3e-15  Score=117.75  Aligned_cols=116  Identities=25%  Similarity=0.298  Sum_probs=92.0

Q ss_pred             CccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce---EEEEecCccceE
Q psy12061        378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA---VYYLSRTTRNWA  454 (626)
Q Consensus       378 s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~~  454 (626)
                      |..+.++|.+.+|..+|.++++...+.+++.|+|++|....  .+|.|.+|.|+|+..+...+..   ...........+
T Consensus         3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (122)
T 1va9_A            3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKEL--QNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVY   80 (122)
T ss_dssp             CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSST--TCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEE
T ss_pred             CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcC--CCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEE
Confidence            45566778888898789999999999999999999987522  2377999999998877543211   111122344679


Q ss_pred             EEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCC
Q psy12061        455 LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK  495 (626)
Q Consensus       455 ~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~  495 (626)
                      .|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+++|..
T Consensus        81 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  121 (122)
T 1va9_A           81 TLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSS  121 (122)
T ss_dssp             EEESCCSSCCEEEEEEEEETTEECCCCCCEECCCCSSCCCC
T ss_pred             EeCCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeCCCCCCC
Confidence            99999999999999999999999999999999999887763

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.5e-14  Score=114.49  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCcc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTTR  451 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~  451 (626)
                      |.|.+|..+.+.|....|. +|.++++...+.+++.|+|.++...    ++.|.+|.|+|+..... .+...   .....
T Consensus         1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~sv~l~W~~p~~~----~~~i~~Y~v~~~~~~~~~~~~~~---~~~~~   72 (118)
T 1x3d_A            1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPSDN----GSKIQNFVLEWDEGKGNGEFCQC---YMGSQ   72 (118)
T ss_dssp             CCCCCCCCCCCCCCCSCCC-CCCCCEEEEEETTEEEEECCCCCCC----SSCEEEEEEEECTTTSSSCCEEE---EEESC
T ss_pred             CCCCCCcCEEEEcCCCCCc-CCCCcEEeccCCCEEEEEECCCCCC----CCcceEEEEEEecCCCCCCeEEe---eccCC
Confidence            5677888888888888887 8889999999999999999998743    26799999998765542 22222   22234


Q ss_pred             ceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       452 ~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      ..+.+.+|+|++.|.|+|+|.|..|.|++|....+.|....|.
T Consensus        73 ~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~P~  115 (118)
T 1x3d_A           73 KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGP  115 (118)
T ss_dssp             SEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEECSCCCCC
T ss_pred             cEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcCCCCCc
Confidence            6799999999999999999999999999999999999877665

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.4e-14  Score=113.33  Aligned_cols=111  Identities=18%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCcee----eEEEEEEEeccCCccccceeeecCcc
Q psy12061        478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPII----GYKVRVWEVDQDMSRANDTIIPVGNT  553 (626)
Q Consensus       478 s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~----~Y~i~~~~~~~~~~~~~~~~~~~~~~  553 (626)
                      +..|....+.+....|+.+|.+|++...+.+++.|+|+  ++...++.+.    +|.|+|+..+.... ..  .......
T Consensus         3 ~~~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~--~p~~~~~~i~~~~~~Y~v~y~~~~~~~~-~~--~~~~~~~   77 (123)
T 2edd_A            3 SGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWA--DNSVPKNQKTSEVRLYTVRWRTSFSASA-KY--KSEDTTS   77 (123)
T ss_dssp             SCCSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEE--CSSSCSSCCCSCCCCEEEEEEETTCTTC-CC--CCEEESS
T ss_pred             CccCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEec--CCCCCcccccCcCceEEEEEEECCCCCc-cE--EEEeCCc
Confidence            34455566677777788899999999999999999999  4554555444    99999987643211 11  2223357


Q ss_pred             ceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       554 ~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +++.|.||+|++.|.|+|+|+|..|.|++|.+ +.++|.+.
T Consensus        78 ~~~~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~-v~~~T~~~  117 (123)
T 2edd_A           78 LSYTATGLKPNTMYEFSVMVTKNRRSSTWSMT-AHATTYEA  117 (123)
T ss_dssp             SEEEEESCCTTCEEEEEEEECCSSSCCCCCCC-EEEECCCS
T ss_pred             eEEEecCCCCCCEEEEEEEEeCCCcccCCCCC-EEEEccCC
Confidence            89999999999999999999999999999965 55666643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.57  E-value=6.5e-15  Score=112.96  Aligned_cols=79  Identities=22%  Similarity=0.283  Sum_probs=67.9

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEE--c--c----CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--F--E----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR   74 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~--~--~----~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   74 (626)
                      ..|+.+.|.|.+.|.|.|+|.|+|||.+|..+.++.+  .  .    .++|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            4688999999999999999999999999987765422  1  1    234999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy12061         75 LIVLHGP   81 (626)
Q Consensus        75 l~v~~~p   81 (626)
                      |.|...|
T Consensus        94 l~V~~~P  100 (103)
T 1wwb_X           94 AHFMGWP  100 (103)
T ss_dssp             ECCSCCC
T ss_pred             EEECCCC
Confidence            9886655

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.57  E-value=4.9e-15  Score=112.04  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=67.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.| |.|.|+|+|..+..+.|+.+. +++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        21 v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           21 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             ECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC-SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe-CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            56899999999999998 899999999999887887765 778999999999999999999999999888888776

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.57  E-value=1.4e-13  Score=122.92  Aligned_cols=191  Identities=16%  Similarity=0.101  Sum_probs=128.7

Q ss_pred             CCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeee---ecceeeEEEEe--CCCcceeEEEE
Q psy12061        290 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE---YGNVGIAVVRI--PSEFYYTEYEV  364 (626)
Q Consensus       290 ~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~L~p~~~Y~~  364 (626)
                      .|.++.........+.++|++.  .+.++....|.+.|+..+ ..|..+....   ........+.+  .++..++.|.|
T Consensus        23 ~P~nl~C~~~~~~~l~C~W~~~--~~~~~~~~~y~l~y~~~~-~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~   99 (227)
T 1eer_B           23 GPEELLCFTERLEDLVCFWEEA--ASAGVGPGQYSFSYQLED-EPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLEL   99 (227)
T ss_dssp             STTSCEEEBSSSSCCEEEEEES--CCSSCCTTSEEEEEEETT-SCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEE
T ss_pred             CCcCCeEECCCCCEEEEEecCC--CCCCCCCccEEEEEEcCC-CCceeccceeccCCCCCceEEEEeCCCcceeeEEEEE
Confidence            6889998888889999999993  344445788999998764 3344332111   11222333333  45677889999


Q ss_pred             EEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeee-cceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE
Q psy12061        365 KVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFN-STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV  443 (626)
Q Consensus       365 ~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~-~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~  443 (626)
                      +|.|.|..+  .  ....+.....+++.+|.++++...+ .+.+.|+|++|.....  ++ +..|.|+|+..+...+...
T Consensus       100 ~V~a~~~~~--~--~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~--~~-~l~Yev~y~~~~~~~w~~~  172 (227)
T 1eer_B          100 RVTAASGAP--R--YHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPM--TS-HIRYEVDVSAGQGAGSVQR  172 (227)
T ss_dssp             EEEETTSCE--E--EEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSC--GG-GEEEEEEEECCSSSCCCCE
T ss_pred             EEEecCCCc--c--EEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCccc--cc-ceEEEEEEEcCCCCCcEEE
Confidence            999976332  1  1233444454555599999998764 7899999998875321  12 7899999987765444332


Q ss_pred             EEEecCccceEEEeCCccCceEEEEEEEeeCC----C-CCCCCccEEEeecCC
Q psy12061        444 YYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA----G-EGPESERYLERTYRK  491 (626)
Q Consensus       444 ~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~----g-~s~~s~~~~~~t~~~  491 (626)
                      . ........+.|.+|+|++.|.|+|+|....    | .|++|..+.+.|..+
T Consensus       173 ~-~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~~d  224 (227)
T 1eer_B          173 V-EILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSD  224 (227)
T ss_dssp             E-EECTTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC---
T ss_pred             E-EEecCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECccc
Confidence            2 223345679999999999999999999642    3 378898888888543

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.57  E-value=2e-14  Score=109.58  Aligned_cols=99  Identities=23%  Similarity=0.394  Sum_probs=77.3

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc-cceEEEEecCccceEEEeCCccCceEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE-ETAVYYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      .|..+|.++.+...+.+++.|+|++|.....  +|.|.+|.|.|+..+... ..............+.|.+|+|++.|.|
T Consensus         3 ~P~~~P~~~~~~~~s~tsi~v~W~~p~~~~~--ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v   80 (102)
T 3n1f_C            3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNN--NTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDI   80 (102)
T ss_dssp             -CCSCCEEEEEEECSSSCEEEEEECCC-------CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEE
T ss_pred             CCCCCCceeEEEEcCCCEEEEEeECCChhhc--CCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEE
Confidence            5777899999999999999999999864322  488999999999876542 1212223334456799999999999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeec
Q psy12061        468 KVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      +|+|+|..|.|++|..+.++|+
T Consensus        81 ~V~A~n~~G~G~~S~~~~~~T~  102 (102)
T 3n1f_C           81 KMQCFNEGGESEFSNVMICETK  102 (102)
T ss_dssp             EEEEEETTEECCCCCCEEEECC
T ss_pred             EEEEECCCcCCCCCCCEEeecC
Confidence            9999999999999999888874

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.57  E-value=2.2e-14  Score=114.00  Aligned_cols=111  Identities=22%  Similarity=0.267  Sum_probs=82.4

Q ss_pred             CCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEec
Q psy12061        480 ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV  559 (626)
Q Consensus       480 ~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  559 (626)
                      .+......+....| .+|.++.+...+.+++.|.|+  ++.+++++|.+|.|+|+...................+.+.+.
T Consensus         5 ~~~~~~~~~~~~~P-~~P~~~~~~~~~~~sv~l~W~--p~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~   81 (121)
T 1x4z_A            5 SSGSQPDHGRLSPP-EAPDRPTISTASETSVYVTWI--PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEIT   81 (121)
T ss_dssp             CCCCCCCSSSCCCC-CCCCCCEEEECCSSEEEEECC--CCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEE
T ss_pred             cccceeccCcCCCC-ccCCCCEEEEccCCEEEEEEE--CCCCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEEC
Confidence            33333344444444 588899999999999999999  577788889999999987652111111111224577899999


Q ss_pred             CCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        560 DLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       560 ~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +|.|++.|.|+|+|+|..|.|++|.+...+++..
T Consensus        82 ~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~~  115 (121)
T 1x4z_A           82 GLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG  115 (121)
T ss_dssp             SCCTTCEEEEEEEEEETTEECCCCCCCCCEECCS
T ss_pred             CCCCCCEEEEEEEEEcCCCcCCCcCCCCCEEcCC
Confidence            9999999999999999999999998776666654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.57  E-value=8.1e-15  Score=134.53  Aligned_cols=130  Identities=18%  Similarity=0.238  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEEEEcCCCCceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCc---ceeEEEeeC--CEEe
Q psy12061         50 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL---DVAYIWTHN--GVRI  124 (626)
Q Consensus        50 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p---~~~i~W~~~--~~~~  124 (626)
                      |+.+|+|.|+|.|.   |.....+.+.+..+|.+ ...|..+.+.+|++++|.|.+.+.|..   ...+.|+|+  |..+
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~~-~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELVM-TQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             ------------------------------CCCE-EEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeeceeE-EeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            78999999999998   55555555555555544 445788999999999999999998731   235699974  3322


Q ss_pred             ccc-----cCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEEeCCCce-EEEEEEEEeCCCCCC
Q psy12061        125 GNM-----DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLP  183 (626)
Q Consensus       125 ~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p  183 (626)
                      ...     ........++..    ....|.|.+++.+|+|.|+|.|.|..+.. .....|.|...+.+|
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P  155 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP  155 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCC
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCC
Confidence            100     000000133332    22389999999999999999999886643 334467776544334

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=113.13  Aligned_cols=102  Identities=20%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             EEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061        485 LERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       485 ~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  564 (626)
                      .+.+.+..| .+|.++++...+.+++.|+|+  +|.+.++.|.+|.|+|+..+....  ..........+.+.|.+|+|+
T Consensus        10 ~~~~~~~~P-~~P~~l~~~~~~~~sv~l~W~--~p~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~   84 (119)
T 2ed7_A           10 AIPSSSVLP-SAPRDVVPVLVSSRFVRLSWR--PPAEAKGNIQTFTVFFSREGDNRE--RALNTTQPGSLQLTVGNLKPE   84 (119)
T ss_dssp             SCCCSSSSC-CCCSCCEEEEECSSCEEEECC--CCSCCSSCEEEEEEEEEESSCCCC--EEEECCCTTCCEEEECSCCSS
T ss_pred             cCCCCCCCC-cCCcceEEEecCCCEEEEEEe--CCCCCCCcEEEEEEEEEeCCCCcc--eeeEeecCCceEEEeCCCCCC
Confidence            345666666 589999999999999999999  666778999999999876654322  112233456789999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      +.|.|+|+|+|..|.|++|+++. +++.
T Consensus        85 t~Y~~~V~A~n~~G~g~~S~~~~-~~T~  111 (119)
T 2ed7_A           85 AMYTFRVVAYNEWGPGESSQPIK-VATQ  111 (119)
T ss_dssp             SEEEECCEEEESSCBCSCCCCEE-EECC
T ss_pred             CEEEEEEEEEcCCccCCCcCCEE-EEeC
Confidence            99999999999999999997654 5554

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=7.2e-15  Score=112.03  Aligned_cols=78  Identities=19%  Similarity=0.361  Sum_probs=69.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|.| |.|.|+|++..+....++.+. +++|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|
T Consensus        15 v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~   92 (99)
T 2cr3_A           15 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL   92 (99)
T ss_dssp             BCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSCC
T ss_pred             EeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecCC
Confidence            57899999999999987 799999999999877787775 6789999999999999999999999998888888886554

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.56  E-value=8.9e-15  Score=112.15  Aligned_cols=78  Identities=27%  Similarity=0.411  Sum_probs=67.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc--EEEccCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~--~~~~~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+....+  +....++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        17 ~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (100)
T 2kdg_A           17 IDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV   96 (100)
T ss_dssp             EETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999999999999999999999976543  3334444  7999999999999999999999999888899988


Q ss_pred             Ee
Q psy12061         78 LH   79 (626)
Q Consensus        78 ~~   79 (626)
                      ..
T Consensus        97 ~~   98 (100)
T 2kdg_A           97 LA   98 (100)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.56  E-value=1.3e-14  Score=133.09  Aligned_cols=187  Identities=16%  Similarity=0.156  Sum_probs=109.6

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEe--CCEEc-cCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKK--DGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~--~~~~i-~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|+++.|+|.+.. +.| .+.|..  ++..+ ..+...     ..|.|.+++.+  |.|+|.+..........+.|.|
T Consensus        11 V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~-----~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V   82 (291)
T 1mq8_A           11 LPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNR-----KVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTV   82 (291)
T ss_dssp             ECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSE-----EEEEEESCCSC--CCCEEEEECSSCEEEEECEEEE
T ss_pred             EcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCce-----EEEEEEecccC--CeEEEEEEcCCccEEEEEEEEE
Confidence            679999999999964 555 488864  12112 111111     13788888854  4699999755334555678999


Q ss_pred             EeCCceeeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         78 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        78 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      +.+|..+...+....+.+|+.++|.|.+.+..++ .++|+|+|+++.+......   ..   .....|.+......|.+.
T Consensus        83 ~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~---~~---~~~~~l~~~~~~~D~g~~  156 (291)
T 1mq8_A           83 YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---GE---PAEVTTTVLVRRDHHGAN  156 (291)
T ss_dssp             CBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---BT---TEEEEEECCCSSSCSSCE
T ss_pred             ecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---CC---CceEEEEeeeeeccCCce
Confidence            8888776655555568899999999999986543 4678999999988754210   00   112356666666666679


Q ss_pred             EEEEEEeCCCc--------eEEEEEEEEeCCCCCCCceEE--EEEeccceEEEEec
Q psy12061        157 YECVVKSTVGK--------ISTKTTVIVEGPPGLPGGVQV--VEVHKTSATIQWTD  202 (626)
Q Consensus       157 Y~C~a~n~~g~--------~~~~~~l~v~~~P~~p~~~~~--~~~~~~~~~l~W~~  202 (626)
                      |+|.|.|..+.        .+....|.|..+|.....+..  ....+..++|.|..
T Consensus       157 ~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~  212 (291)
T 1mq8_A          157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL  212 (291)
T ss_dssp             EEEEEEEECGGGTSCEEEECCCCEECBC----------------------------
T ss_pred             EEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEc
Confidence            99999987652        355668888877644222211  12345667777774

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.56  E-value=9.9e-15  Score=130.82  Aligned_cols=167  Identities=16%  Similarity=0.208  Sum_probs=106.6

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeCC--E---Ec---c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKDG--N---II---G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~---~i---~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.  +...+.|+|..  .   .+   .           ..+|+.+..++     +|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   91 (226)
T 3mlr_H           12 KQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDT   91 (226)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             EecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccC
Confidence            5789999999999763  34689999832  1   11   0           12566665433     399999999999


Q ss_pred             EEEEEEEEcCCC---------CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCE
Q psy12061         56 GIYSCTATNVHG---------MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV  122 (626)
Q Consensus        56 G~Y~C~a~n~~g---------~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~  122 (626)
                      |.|.|.+.+..+         .....+.|.|..    +|.+... +....+..|+.++|.|.+.+..++.+.+.|  ++.
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~  168 (226)
T 3mlr_H           92 GKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSG  168 (226)
T ss_dssp             EEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEE-EEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred             EEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEe-cCcccccCCCCEEEEEEEEEEECCCeEEEE--CCc
Confidence            999999987531         112335666643    3333322 222334689999999999996554578899  433


Q ss_pred             EeccccC----CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEE
Q psy12061        123 RIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT  173 (626)
Q Consensus       123 ~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~  173 (626)
                      .+.....    .......+. -.+.|.|......| |.|+|.+.|..+.......
T Consensus       169 ~~~~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  221 (226)
T 3mlr_H          169 ALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  221 (226)
T ss_dssp             TCCTTEEECCCEECTTSCEE-EEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred             cccCCeEeCCcEECCCCCEE-EEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence            3321100    000011111 12478899998889 9999999998876554443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.56  E-value=1.1e-13  Score=123.04  Aligned_cols=172  Identities=23%  Similarity=0.299  Sum_probs=109.5

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCCeEEEeec-CCCCCE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNA-SFADAG  155 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~-~~~d~g  155 (626)
                      +|.+. ..|.+..+.+|++++|.|.+.+.|.+  .+.|+++|..+.....     .....   ....|.|.++ ..+|+|
T Consensus         6 ~P~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~--~v~W~k~~~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~~d~G   77 (212)
T 2yd6_A            6 PPRFT-RTPVDQTGVSGGVASFICQATGDPRP--KIVWNKKGKKVSNQRF-----EVIEFDDGSGSVLRIQPLRTPRDEA   77 (212)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCTTE-----EEEEEGGGTEEEEEECSCCTTTTCE
T ss_pred             CCeEE-eCcceeEEecCCeEEEEEEEeeCCCC--EEEEEECCcCCCCCce-----eEEEEcCCCceEEEEeccCCCCCCe
Confidence            44444 45778899999999999999998876  5699999999875421     11111   2356999999 599999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEeCCCC----CCCce----EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceE
Q psy12061        156 EYECVVKSTVGKISTKTTVIVEGPPG----LPGGV----QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN  227 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~~~P~----~p~~~----~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~  227 (626)
                      .|+|.|.|..|..+..+.|.|..++.    .|...    .........+.|.|...   +.+...  +.        |.+
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~p~--v~--------W~~  144 (212)
T 2yd6_A           78 IYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS---GNPDPE--IT--------WFK  144 (212)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEE---CSSCCE--EE--------EEE
T ss_pred             EEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEec---CCCCCe--EE--------EEE
Confidence            99999999999998899999976532    22110    01122345667777642   112111  22        222


Q ss_pred             eecceeee------eeeccCCceeEEEEeeccCCceEEEEEEEecCCccCCC
Q psy12061        228 VSEHVIGK------EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP  273 (626)
Q Consensus       228 ~~~~~~~~------~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~~~  273 (626)
                      .+..+...      ..........+.+.+ +...+.+.|+|.|.|..|....
T Consensus       145 ~g~~l~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          145 DFLPVDTSNNNGRIKQLRSESIGALQIEQ-SEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             TTEEC------CCEEEEEETTEEEEEECS-CCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCccccCcCCCceEEEEecCCeEEEEEcC-CCcccCEEEEEEEECCCCcccc
Confidence            22111100      000001223455555 8999999999999999996543

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=1.7e-14  Score=111.13  Aligned_cols=99  Identities=21%  Similarity=0.320  Sum_probs=75.5

Q ss_pred             cCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCc-eeeEEEEEEEeccCCcccc-ceeeecCccceEEecCCCCCce
Q psy12061        489 YRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP-IIGYKVRVWEVDQDMSRAN-DTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       489 ~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~-i~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      .+++|. +|.++.+...+.+ +.|+|+  +|...+|. |.+|.|+|+..+...+... ..+......+.+.|.+|.|++.
T Consensus         3 ~~~~P~-~P~~~~~~~~~~~-v~l~W~--~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   78 (105)
T 2haz_A            3 HMDTPS-SPSIDQVEPYSST-AQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT   78 (105)
T ss_dssp             CCCCCC-CCEEEEEEECSSC-EEEEEE--CCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCE
T ss_pred             CCCCCc-CCCCCEEEEcCCc-EEEEEc--CCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCE
Confidence            355676 4889998888877 999999  66777777 9999999987654422111 1122223568899999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        567 YHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       567 Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |.|+|+|+|..|.|++|++. .|+|.
T Consensus        79 Y~~rV~A~n~~G~g~~S~~~-~~~T~  103 (105)
T 2haz_A           79 YAVRLAALNGKGLGEISAAS-EFKTQ  103 (105)
T ss_dssp             EEEEEEEEETTEECCCCCCE-EEECC
T ss_pred             EEEEEEEEcCCccCCCcCCE-eeEEe
Confidence            99999999999999999664 56665

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=2.1e-14  Score=112.40  Aligned_cols=103  Identities=24%  Similarity=0.424  Sum_probs=82.6

Q ss_pred             EEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061        485 LERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       485 ~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  564 (626)
                      .++|.+..|. +|.++++...+.+++.|.|+  +|...++.|.+|.|+|+..+...   ..........+.+.|.+|.|+
T Consensus         3 ~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~   76 (111)
T 1x5l_A            3 SGSSGQAAPS-QVVVIRQERAGQTSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEM---QSYSTLKAVTTRATVSGLKPG   76 (111)
T ss_dssp             CCCCSCCCCC-CCCCEECSCBCSSCEEEEEC--CCSCCCSCCCEEEEEEEESSSCC---SSCEEEEESSSEEEECSCCTT
T ss_pred             eEEcCCCCCC-CCceEEEEEcCCCEEEEEEC--CCCCCCCEEEEEEEEEEECCCCc---eeEEEecCCCCEEEEcCCCCC
Confidence            4677877776 67899988889999999999  66777899999999988765321   222334557789999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +.|.|+|+|+|..|.|++|++ +.+++.+.
T Consensus        77 t~Y~~~V~A~n~~G~g~~S~~-~~~~T~~~  105 (111)
T 1x5l_A           77 TRYVFQVRARTSAGCGRFSQA-MEVETGKP  105 (111)
T ss_dssp             CEEEECEEEEETTEECCCCCC-EEEECCCT
T ss_pred             CEEEEEEEEEeCCcCCCCccc-EEEEcCCC
Confidence            999999999999999999966 45666653

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.56  E-value=9.4e-15  Score=111.82  Aligned_cols=77  Identities=30%  Similarity=0.546  Sum_probs=70.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+.++.+..++   +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        18 v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           18 VSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence            468999999999999999999999999999888888887665   69999999999999999999999998888888874

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.55  E-value=2.4e-14  Score=113.04  Aligned_cols=111  Identities=23%  Similarity=0.339  Sum_probs=89.8

Q ss_pred             CCCCccEEEEcc-C-CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        375 GPESEVVTIFSA-E-DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       375 ~~~s~~~~~~t~-~-~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |++|..+.++|. + ..|. +|.++++...+.+++.|+|++|...    ++.+.+|.|+|+..+...+...    .....
T Consensus         1 G~~S~~~~~~T~~~~~~P~-~P~~l~~~~~~~~si~l~W~~p~~~----~~~i~~Y~v~~~~~~~~~~~~~----~~~~~   71 (116)
T 1x5g_A            1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPVSG----NGEIQNYKLYYMEKGTDKEQDV----DVSSH   71 (116)
T ss_dssp             CCCCCCCCCSSCCCSSCCC-CCSSCEEEEEETTEEEEECCCCSCC----SSCCSEEEEEEEETTCCCCCCE----EECSS
T ss_pred             CCCccCeEEEcCCCCCCCc-CCCccEEEecCCCEEEEEEeCCCCC----CCcccEEEEEEEECCCCccEEE----ecCCc
Confidence            355677777774 2 5665 8899999999999999999998643    3679999999988765544221    22456


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .+.|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+..|+
T Consensus        72 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  113 (116)
T 1x5g_A           72 SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGP  113 (116)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECCCSSCC
T ss_pred             eEEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECCCCCCC
Confidence            799999999999999999999999999999999999988775

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=4e-15  Score=113.76  Aligned_cols=76  Identities=24%  Similarity=0.399  Sum_probs=66.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+....+.....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        23 v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           23 VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             ECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred             EeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence            5789999999999999999999999999997665555444558999999999999999999999999888777776

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.55  E-value=1.2e-13  Score=120.87  Aligned_cols=172  Identities=14%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec--CCeEEEeecCCCCCEeE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID--GGLLEITNASFADAGEY  157 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y  157 (626)
                      +|.+ ..+|.+..+.+|++++|.|.+.+.|.+  .+.|+|+|..+.....   ...++...  ...|.|.+++..|+|.|
T Consensus         5 ~P~~-~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y   78 (194)
T 2a38_A            5 APTF-TQPLQSVVVLEGSTATFEAHISGFPVP--EVSWFRDGQVISTSTL---PGVQISFSDGRAKLTIPAVTKANSGRY   78 (194)
T ss_dssp             EEEE-EECCCCEEEETTSCEEEEEEEEEESCC--EEEEEESSSBCCTTTS---TTCEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeE-EccCCceEEECCCEEEEEEEEEecCCC--EEEEEECCEEcccccC---CceEEEeCCCEEEEEECCCCcccCEEE
Confidence            3444 446788999999999999999998876  4699999998875431   11233333  34899999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeCCCCCCCce----EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeeccee
Q psy12061        158 ECVVKSTVGKISTKTTVIVEGPPGLPGGV----QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI  233 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~~~P~~p~~~----~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~  233 (626)
                      +|.+.|..|.....+.|.|...+.+|...    .........+.|.|....   .+...  +.        |.+.+..+.
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~~~--v~--------W~~~~~~~~  145 (194)
T 2a38_A           79 SLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTG---IPTPV--VK--------FYRDGAEIQ  145 (194)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEE---ESCCE--EE--------EEETTEECC
T ss_pred             EEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEE---ecCCe--EE--------EEECCEECC
Confidence            99999999998888888888644333211    011222344555555311   01111  22        222211110


Q ss_pred             ee---eeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        234 GK---EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       234 ~~---~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ..   ..........+.+.+ +...+.+.|+|.|.|..|..
T Consensus       146 ~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~  185 (194)
T 2a38_A          146 SSLDFQISQEGDLYSLLIAE-AYPEDSGTYSVNATNSVGRA  185 (194)
T ss_dssp             CSSSEEEEEETTEEEEEEEE-ECGGGCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEcCCEEEEEECC-CChhcCeEEEEEEEeCCCce
Confidence            00   000001222456655 89999999999999998854

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.55  E-value=6.5e-15  Score=110.96  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCC--EEccCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~i~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.|.|.|.|.|+|+|  ..+....+..... .++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        14 v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           14 IKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             ECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEE
Confidence            578999999999999999999999999  8886554333222 246999999999999999999999998888888876

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.55  E-value=4.6e-14  Score=110.74  Aligned_cols=106  Identities=25%  Similarity=0.355  Sum_probs=83.4

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc-cceEEEEecCccceEEEeCCccCceE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE-ETAVYYLSRTTRNWALIVGLQPDTKY  465 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y  465 (626)
                      +.+|+.+|.++++...+.++|.|+|++|.....  ++.|.+|.|+|+..+... ..............+.|.+|+|++.|
T Consensus         5 ~~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~--~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   82 (114)
T 1x4y_A            5 SSGPVAGPYITFTDAVNETTIMLKWMYIPASNN--NTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSY   82 (114)
T ss_dssp             CCSCCSCCEEEEEECSSSSCEEEEEECCCTTSC--CCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEE
T ss_pred             ccCCCCCCeEEEEEecCCCEEEEEEeCCCchhc--CCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEE
Confidence            557777999999999999999999999863222  478999999997765541 11111122344466999999999999


Q ss_pred             EEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        466 YVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       466 ~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .|+|+|+|..|.|++|..+.++|.+..++
T Consensus        83 ~~~V~A~n~~G~g~~S~~v~~~T~~~~~p  111 (114)
T 1x4y_A           83 DIKMQCFNEGGESEFSNVMICETKARSGP  111 (114)
T ss_dssp             EEEEEEECTTCCCCCCCCEEEECCCCCCS
T ss_pred             EEEEEEEcCCccCCCcCCEEEEeCCCCCC
Confidence            99999999999999999999999876543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.54  E-value=9e-15  Score=113.98  Aligned_cols=81  Identities=25%  Similarity=0.520  Sum_probs=62.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+..+.++.+.. +++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        22 v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           22 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             EETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC-
T ss_pred             EeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCC
Confidence            4689999999999999999999999999998766666554 457999999999999999999999999999999999776


Q ss_pred             Cc
Q psy12061         81 PS   82 (626)
Q Consensus        81 p~   82 (626)
                      |.
T Consensus       102 ~~  103 (108)
T 3kvq_A          102 QE  103 (108)
T ss_dssp             --
T ss_pred             Cc
Confidence            54

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=115.07  Aligned_cols=110  Identities=27%  Similarity=0.414  Sum_probs=83.4

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.+..+..+.++|.+++|. +|.++++...+.+++.|+|+  +|... |.|.+|.|+|+..+....  ..........+.
T Consensus         1 Gss~~~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~--~p~~~-g~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~   74 (118)
T 2yrz_A            1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQ--EPRCE-RPLQGYSVEYQLLNGGEL--HRLNIPNPAQTS   74 (118)
T ss_dssp             CCCCCCSCCTTSSSCSCCC-CCCCCEECCCBTTEEEEECC--CCCCS-SCEEEEEEEEEBSSSCCE--EEEEESCTTCCE
T ss_pred             CCCCCCCcceeecCCCCCC-CCCceEEEeCCCCEEEEEeC--CCCCC-CCccEEEEEEEECCCCce--EEEEcCCCCcCE
Confidence            3444555677888888886 78899999899999999999  45444 799999999876544311  111223356789


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEee
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~  591 (626)
                      +.|.+|+|++.|.|+|+|+|..|.|++|++.+.+.+
T Consensus        75 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t  110 (118)
T 2yrz_A           75 VVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES  110 (118)
T ss_dssp             EEEESCCTTCEEEEEEEEEESSCEEEEEEEEEECCC
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCcCCCCcCCceEeCC
Confidence            999999999999999999999999999865443433

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.54  E-value=1.9e-13  Score=119.09  Aligned_cols=184  Identities=13%  Similarity=0.192  Sum_probs=129.8

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEe-----cCCCcceeeeeeeecceeeEEEEeCC-CcceeEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK-----KNDTEFQSETLKEYGNVGIAVVRIPS-EFYYTEY  362 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-L~p~~~Y  362 (626)
                      .+|.++++..... ...|+|++++   .......|.|+|+.     .+...|.......  +.....+.+++ +..+..|
T Consensus         8 p~P~nv~~~s~n~-~~iL~W~p~~---~~~~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~--~i~~~~Cdlt~~~~~~~~Y   81 (206)
T 4doh_B            8 PAPQQLSVLSTNM-KHLLMWSPVI---APGETVYYSVEYQGEYESLYTSHIWIPSSWCS--LTEGPECDVTDDITATVPY   81 (206)
T ss_dssp             CCCCCCEEEEETT-EEEEECCCCC---CSSSCCEEEEEEEEHHHHHHSTTCCEEEEEEE--EESSSEEECTTTCCSSSCE
T ss_pred             CCCCeeEEEEeCC-EEEEEECCCC---CCCCCEEEEEEEEEeccccCCCccceeccccc--CCCCCEEcCCccccCCCCE
Confidence            4688999877654 4799999842   22334789999995     4567887643332  33445666774 6668899


Q ss_pred             EEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce
Q psy12061        363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA  442 (626)
Q Consensus       363 ~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~  442 (626)
                      .+||+|.+..+.+.|+....+......-.+|| .+.+. ....+|.|.|.++        +.+..|.|.||+.+......
T Consensus        82 ~~RVrA~~~~~~S~w~~~~~f~~~~~t~i~PP-~v~v~-~~~~~i~V~~~~p--------~~~l~Y~v~y~~~~~~~~~~  151 (206)
T 4doh_B           82 NLRVRATLGSQTSAWSILKHPFNRQSTILTRP-GMEIT-KDGFHLVIELEDL--------GPQFEFLVAYWRREPGAEEH  151 (206)
T ss_dssp             EEEEEEEETTEECCCEECSSCBCGGGCBCCCC-CEEEE-EETTEEEEEECCC--------CTTCEEEEEEEESSSSCCCE
T ss_pred             EEEEEEEcCCCccCccccccccchhhcccCCC-eEEEE-eCCCEEEEEecCC--------CCcEEEEEEEEEcCCCceeE
Confidence            99999999988888766544433322222255 47776 5788999999976        33678999999987664422


Q ss_pred             EEEEecCccceEEEeCCccCceEEEEEEEeeC--CCCCCCCccEEEeec
Q psy12061        443 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN--AGEGPESERYLERTY  489 (626)
Q Consensus       443 ~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~--~g~s~~s~~~~~~t~  489 (626)
                      . .........+.|.+|+|++.|.|+|+|...  .+.|.+|....+.|.
T Consensus       152 ~-~~~~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~~t~  199 (206)
T 4doh_B          152 V-KMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ  199 (206)
T ss_dssp             E-EEECCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEECC-
T ss_pred             E-eEEccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeEEcc
Confidence            1 222333456899999999999999999986  377888988877775

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.54  E-value=1.8e-14  Score=110.16  Aligned_cols=77  Identities=29%  Similarity=0.469  Sum_probs=66.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc-EEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR-RKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~-~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+..+.+ +.+..++   +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        17 v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV   96 (99)
T ss_dssp             EETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEE
Confidence            46899999999999999999999999999976544 4444444   5999999999999999999999999888888888


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus        97 ~   97 (99)
T 1u2h_A           97 R   97 (99)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.54  E-value=3e-15  Score=115.64  Aligned_cols=76  Identities=25%  Similarity=0.526  Sum_probs=69.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+.++.+..+   ++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        26 v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           26 VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             ESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEE
T ss_pred             EeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEE
Confidence            57899999999999999999999999999988888887653   47999999999999999999999999888888887

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=111.90  Aligned_cols=100  Identities=18%  Similarity=0.368  Sum_probs=80.5

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCce
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      +|.++.|+.+|.++++...+.+++.|+|++++....++.|.+|.|+|+..+..     .........+.+.|.+|.|++.
T Consensus         2 ~t~e~~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~-----~~~~~~~~~~~~~i~~L~p~t~   76 (103)
T 2edy_A            2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ-----QELQNITTDTRFTLTGLKPDTT   76 (103)
T ss_dssp             TTTCCCCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSC-----CEEEEEESSSCCEECSCCTTCC
T ss_pred             CCCCCCCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCC-----ccEEEcCCcceEEEcCCCCCCE
Confidence            35667788899999999889999999999543367789999999998776542     1223345678899999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        567 YHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       567 Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |.|+|+|+|..|.|++|.++. ++|.
T Consensus        77 Y~~~V~A~n~~G~g~~S~~~~-~~T~  101 (103)
T 2edy_A           77 YDIKVRAWTSKGSGPLSPSIQ-SRTM  101 (103)
T ss_dssp             EEEECCEECSSCBCCCCCCCC-CCCC
T ss_pred             EEEEEEEECCCCCCCCCCCEE-EEec
Confidence            999999999999999997643 5554

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.53  E-value=1.8e-14  Score=120.08  Aligned_cols=86  Identities=30%  Similarity=0.405  Sum_probs=72.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc--CC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~--~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+.++.+..  ++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        53 v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  132 (154)
T 1fhg_A           53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV  132 (154)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEE
Confidence            5689999999999999999999999999998888887753  23  7999999999999999999999999999999999


Q ss_pred             EeCCceeeeC
Q psy12061         78 LHGPSYYEQL   87 (626)
Q Consensus        78 ~~~p~~~~~~   87 (626)
                      ..+|.....+
T Consensus       133 ~~~p~~~~~~  142 (154)
T 1fhg_A          133 ETMGKEGEGE  142 (154)
T ss_dssp             ECC-------
T ss_pred             eCcCcCCCCC
Confidence            8887665543

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=5e-14  Score=109.52  Aligned_cols=106  Identities=20%  Similarity=0.240  Sum_probs=81.7

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      +..|+.+|.++++...+.++|.|+|.++........+.+.+|.|+|+........  ..........++|.+|+|+|.|.
T Consensus         5 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~--~~~~~~~~~~~~i~gL~P~T~Y~   82 (113)
T 1x5j_A            5 SSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK--YKNANATTLSYLVTGLKPNTLYE   82 (113)
T ss_dssp             SCCCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC--CEECCBCSSEEEEESCCTTCEEC
T ss_pred             cCCCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeE--EEEEecCcCEEEeCCCCCCcEEE
Confidence            3456679999999999999999999988754432122345999999873222211  12233456679999999999999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCC-CCC
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRK-APQ  494 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~-~p~  494 (626)
                      |+|+|++..|.|++|..+.++|.+. +|.
T Consensus        83 f~V~A~~~~G~g~~S~~v~~~T~~~~~Ps  111 (113)
T 1x5j_A           83 FSVMVTKGRRSSTWSMTAHGTTFELSGPS  111 (113)
T ss_dssp             CEEEEECSSCBCCCCCCCCEECCCSSCCC
T ss_pred             EEEEEecCCccCCCcccEEeeccCCCCCC
Confidence            9999999999999999999999987 765

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=112.92  Aligned_cols=81  Identities=36%  Similarity=0.509  Sum_probs=71.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccC--C--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFEN--G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~--g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+.. ..++.+..+  +  +|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        20 v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   99 (110)
T 2dm2_A           20 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM   99 (110)
T ss_dssp             EETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEE
T ss_pred             EeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            56899999999999999999999999999975 566666543  4  599999999999999999999999998889999


Q ss_pred             EEeCCc
Q psy12061         77 VLHGPS   82 (626)
Q Consensus        77 v~~~p~   82 (626)
                      |..+|.
T Consensus       100 V~~~~~  105 (110)
T 2dm2_A          100 VQAVNS  105 (110)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            977653

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=108.66  Aligned_cols=106  Identities=25%  Similarity=0.307  Sum_probs=84.5

Q ss_pred             ccCCCCCCCCCceEEEee--ecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc-eEEEEecCccceEEEeCCcc
Q psy12061        385 SAEDMPQVAPQGVFSRGF--NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET-AVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       385 t~~~~p~~~p~~~~~~~~--~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p  461 (626)
                      |.+++|+.+|.++++...  +.+++.|+|++|...    +|.|.+|.|+|+........ ............+.|.+|+|
T Consensus         3 T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   78 (114)
T 2ede_A            3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEA----NGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNL   78 (114)
T ss_dssp             CCCCCCCSCCEEEEEEECSSCSSCEEEEEECCSSC----SSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCS
T ss_pred             CCCCCCCCCCcceEEEEccCCCCEEEEEECCCCCC----CCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCC
Confidence            557788779999999987  789999999998643    36799999999875543211 12233345667799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      ++.|.|+|+|.|..|.|++|..+.++|.+..|+
T Consensus        79 ~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  111 (114)
T 2ede_A           79 DTMYYFRIQARNSKGVGPLSDPILFRTLKVSGP  111 (114)
T ss_dssp             SCEEEEEEEEECSSCBCCCCCCEEEECCCSSCC
T ss_pred             CCEEEEEEEEEeCCcCcCCcccEEEEecCCCCC
Confidence            999999999999999999999999999876543

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=1.4e-14  Score=110.14  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      |+.+|.+|.+.. ..+++.|+|+  +|.+++++|++|.|+|+..+..+.  ........+.+++.+.+|.+++.|.|||.
T Consensus         7 p~~pP~~l~v~~-~~~sv~L~W~--pP~~~~~~I~gY~vey~~~~~~W~--~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~   81 (108)
T 1v5j_A            7 GLSPPRGLVAVR-TPRGVLLHWD--PPELVPKRLDGYVLEGRQGSQGWE--VLDPAVAGTETELLVPGLIKDVLYEFRLV   81 (108)
T ss_dssp             CCCCCEEEEEEE-CSSSEEEEEE--CCSCCSSCCCBEEEEEEETTCCCE--EEEEEECSSCCEEECCCCCTTSCEECCBE
T ss_pred             CCCCCcceEEEE-eCCEEEEEEC--CCCCCCCCCcEEEEEEEeCCCCcE--EeeeecCCCcCEEEeCCCCCCCEEEEEEE
Confidence            346899999875 5678999999  667788999999999987333221  11112456789999999999999999999


Q ss_pred             EEecCCCCCCCCCcEEEeec
Q psy12061        573 AFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       573 a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |+|..|.|++|++. .++|.
T Consensus        82 A~n~~G~s~pS~~~-~v~T~  100 (108)
T 1v5j_A           82 AFAGSFVSDPSNTA-NVSTS  100 (108)
T ss_dssp             EEETTEEEEECSCC-CCCCS
T ss_pred             EEcCCCCcCCCCCE-EEEeC
Confidence            99999999999654 35554

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=4.3e-14  Score=112.41  Aligned_cols=113  Identities=25%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             CCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeecc-ccccccceeeEEEEEEEEecCCCccceEEEEecCccceE
Q psy12061        376 PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE-LIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWA  454 (626)
Q Consensus       376 ~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~-~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  454 (626)
                      ..+....+.|....|. +|.++++...+.+++.|+|++|. ..    +|.|.+|.|+|+..+...+. ...........+
T Consensus         4 gss~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~~----~g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~   77 (120)
T 1x5f_A            4 GSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPASDP----HGDNLTYSVFYTKEGIARER-VENTSHPGEMQV   77 (120)
T ss_dssp             CCCSSCCCCCCCCCCC-CCEEEEEEEECSSCEEEEEECCSSCS----SCCSSEEEEEEEETTCCCCE-EEECSSTTCSEE
T ss_pred             CCCCCEEecCCCCCCC-CCCCcEEEecCCCEEEEEECCCCCCC----CCcEEEEEEEEEECCCCCce-EEEeccCCccEE
Confidence            3345555667777776 89999999999999999999986 32    36799999999877544332 223334456779


Q ss_pred             EEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        455 LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       455 ~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .|.+|+|++.|.|+|+|+|..|.|++|..+.++|....|+
T Consensus        78 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pP  117 (120)
T 1x5f_A           78 TIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP  117 (120)
T ss_dssp             EECSCCTTCEEEEEEEEECSSCEEEECCCEEEECCCCCCS
T ss_pred             EeCCCCCCCEEEEEEEEECCCccCCCCCCEEEEeCCCCCC
Confidence            9999999999999999999999999999999999866554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=1.5e-14  Score=139.61  Aligned_cols=98  Identities=22%  Similarity=0.277  Sum_probs=68.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC----CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~----~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.| |+|.|.|++++..+..    +.|+.+ .+|+|.|.+|+.+|+|.|+|.|.|..|.....+.|.|
T Consensus       258 v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  335 (361)
T 2xot_A          258 AHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV  335 (361)
T ss_dssp             EETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEE
Confidence            568999999999999 9999999997765432    237777 8899999999999999999999999999999999988


Q ss_pred             EeCCceeeeCCCceEEecCCcEEEEEEecccCCcce
Q psy12061         78 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV  113 (626)
Q Consensus        78 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~  113 (626)
                      ...+            ..|++++|.|.+.|.|.|.+
T Consensus       336 ~~~~------------~~g~~~~l~C~~~g~P~P~i  359 (361)
T 2xot_A          336 YNFT------------LHGHHDTLNAAADPWSHPQF  359 (361)
T ss_dssp             ESSC------------CC------------------
T ss_pred             Eeee------------ccCCceEEEEEeCCCCCCcc
Confidence            4422            67889999999999998865

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=127.43  Aligned_cols=185  Identities=13%  Similarity=0.083  Sum_probs=106.6

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCC--CcceeEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS--EFYYTEYEVKV  366 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~p~~~Y~~~v  366 (626)
                      .+|.++++....... .|+|+++  ....+....|.|+|+..+...|.......  +.....+.+++  +.+...|.+||
T Consensus         9 p~P~nv~~~s~n~~~-iL~W~p~--~~~~~~~~~Y~Vqy~~~~~~~W~~~~~C~--~i~~~~Cdlt~~~~~~~~~Y~~RV   83 (211)
T 3g9v_A            9 LKPQRVQFQSRNFHN-ILQWQPG--RALTGNSSVYFVQYKIYGQRQWKNKEDCW--GTQELSCDLTSETSDIQEPYYGRV   83 (211)
T ss_dssp             CCCEEEEEEEETTEE-EEEEECC--CC---CCCEEEEEEEETTCSSCEEEEEEE--EECCSEEECTGGGCSTTSCEEEEE
T ss_pred             CCCceeEEEEEcCce-EEEECCC--CCCCCCCeEEEEEEEECCCCceEECccCC--CCCCCEECCCCcccccCccEEEEE
Confidence            468999997766544 5999984  33333467899999988777887543222  22334555653  46789999999


Q ss_pred             EEecCCCCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeecccccccccee--------eEEEEEEEEecCCC
Q psy12061        367 QAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR--------LIGHRIKYWKEDNP  438 (626)
Q Consensus       367 ~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~--------i~~Y~v~~~~~~~~  438 (626)
                      +|.+..+.|.|+....+.+..+...+|| .+.+.... ++|.|.|++|.......+|.        ...|.|.||+.+..
T Consensus        84 ~A~~~~~~S~ws~~~~f~~~~~t~i~PP-~v~v~~~~-~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~  161 (211)
T 3g9v_A           84 RAASAGSYSEWSMTPRFTPWWETKIDPP-VMNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLE  161 (211)
T ss_dssp             EEEETTEECCCEECCCBCHHHHCBCCCC-EEECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC-----
T ss_pred             EEECCCCcCCCEecCcccccccCccCCC-EEEEEEcC-CEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCc
Confidence            9999988888876655555333334466 48777654 58999999987531111121        36799999887554


Q ss_pred             ccceEEEEecCccceEEEeCCccCceEEEEEEEeeCC--CCCCCCcc
Q psy12061        439 EETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPESER  483 (626)
Q Consensus       439 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~--g~s~~s~~  483 (626)
                      ...   .........+.|.+|+|++.|.|+|+|....  ..|++|..
T Consensus       162 ~~~---~~~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~~  205 (211)
T 3g9v_A          162 KEQ---KVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEE  205 (211)
T ss_dssp             -CE---EEEEESSCCCC----------CEEEEEEETTTTEECCCCCC
T ss_pred             cEE---EEEecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCCC
Confidence            321   1222344558899999999999999998642  23555543

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=3.5e-14  Score=112.63  Aligned_cols=106  Identities=21%  Similarity=0.234  Sum_probs=87.0

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|.+|..+.++|.+++|. +|.++++...+.+++.|+|++|...    +|.|.+|.|+|+..+...... .........
T Consensus         1 G~g~~S~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~   74 (119)
T 1wfn_A            1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPGEK----NGILTGYRISWEEYNRTNTRV-THYLPNVTL   74 (119)
T ss_dssp             CCCCCSCCCSCCSSCCSCC-CCSCCEEESCCSSEEEEECCCCTTC----CSCCCEEEEEEEESSCGGGCC-CEEECSSCC
T ss_pred             CCCCCCCCEEEECCCCCCC-CCCceEEEECCCCEEEEEEcCCCCC----CCcEEEEEEEEEECCCCCceE-EEEeCCCce
Confidence            6778888899999998887 7889999999999999999998743    377999999998776443221 123345567


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccE
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERY  484 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~  484 (626)
                      .+.|.+|+|++.|.|+|+|.|..|.|++|..+
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           75 EYRVTGLTALTTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             EEEEESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            79999999999999999999999999988765

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.6e-13  Score=106.53  Aligned_cols=101  Identities=21%  Similarity=0.340  Sum_probs=80.8

Q ss_pred             ccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCccceEEEeCCccCc
Q psy12061        385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTTRNWALIVGLQPDT  463 (626)
Q Consensus       385 t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t  463 (626)
                      |.+.+|. +|.++++...+.+++.|+|++|...    +|.|.+|.|+|+..+.. .......  ......+.|.+|+|++
T Consensus         3 T~~~~P~-~p~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t   75 (109)
T 2e7h_A            3 SGSSGPP-AVSDIRVTRSSPSSLSLAWAVPRAP----SGAVLDYEVKYHEKGAEGPSSVRFL--KTSENRAELRGLKRGA   75 (109)
T ss_dssp             SSCCSSC-CCCCCEEEEEETTEEEEECCCCCCS----SSCCCEEEEEEEETTCCSTTTSEEE--EESSSEEEEESCCTTS
T ss_pred             CCCCCCC-CCCccEEEecCCCEEEEEeCCCCCC----CCcEeEEEEEEEECCCCCCceeEEE--ccCCCEEEECCCCCCC
Confidence            5566776 7889999999999999999998643    37799999999887622 2221111  2334579999999999


Q ss_pred             eEEEEEEEeeCCCCCCCCccEEEeecCCC
Q psy12061        464 KYYVKVMAYNNAGEGPESERYLERTYRKA  492 (626)
Q Consensus       464 ~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~  492 (626)
                      .|.|+|+|+|..|.|++|..+.++|.+..
T Consensus        76 ~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~  104 (109)
T 2e7h_A           76 SYLVQVRARSEAGYGPFGQEHHSQTQLDS  104 (109)
T ss_dssp             CEEEEEEEECSSCBCCCCSCEECCCCCCS
T ss_pred             eEEEEEEEEeCCccCCCCCCEEEEcCCCC
Confidence            99999999999999999999999988653

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=109.84  Aligned_cols=106  Identities=23%  Similarity=0.347  Sum_probs=85.6

Q ss_pred             EEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccC
Q psy12061        383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD  462 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  462 (626)
                      +.+.+..|. +|.++++...+.+++.|+|++|...    ++.|.+|.|+|+......+.. ..........+.+.+|+|+
T Consensus        11 ~~~~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~----~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~   84 (119)
T 2ed7_A           11 IPSSSVLPS-APRDVVPVLVSSRFVRLSWRPPAEA----KGNIQTFTVFFSREGDNRERA-LNTTQPGSLQLTVGNLKPE   84 (119)
T ss_dssp             CCCSSSSCC-CCSCCEEEEECSSCEEEECCCCSCC----SSCEEEEEEEEEESSCCCCEE-EECCCTTCCEEEECSCCSS
T ss_pred             CCCCCCCCc-CCcceEEEecCCCEEEEEEeCCCCC----CCcEEEEEEEEEeCCCCccee-eEeecCCceEEEeCCCCCC
Confidence            445566775 8999999999999999999998743    377999999998776544332 2233345677999999999


Q ss_pred             ceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       463 t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      +.|.|+|+|+|..|.|++|..+.++|....|+
T Consensus        85 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pP  116 (119)
T 2ed7_A           85 AMYTFRVVAYNEWGPGESSQPIKVATQPESGP  116 (119)
T ss_dssp             SEEEECCEEEESSCBCSCCCCEEEECCCCSCC
T ss_pred             CEEEEEEEEEcCCccCCCcCCEEEEeCCCCCC
Confidence            99999999999999999999999999876554

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=8e-14  Score=107.55  Aligned_cols=94  Identities=22%  Similarity=0.285  Sum_probs=73.7

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      ++.+|.++++...+.+++.|+|+  +|.+.++.|.+|.|+|+..+..    . ........+.+.+.+|.|++.|.|+|+
T Consensus         7 ~P~~P~~~~~~~~s~~sv~l~W~--~p~~~g~~i~~Y~v~~~~~~~~----~-~~~~~~~~~~~~v~~L~p~t~Y~frV~   79 (106)
T 1x4x_A            7 GPDQCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGS----M-QICYCGPGLSYEIKGLSPATTYYCRVQ   79 (106)
T ss_dssp             SCCCCCCCCCEEEETTEEEEECC--CCSCSSSCCCEEEEEEESSTTS----C-CEEEEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CcCCCCCCEEEEcCCCEEEEEEc--CCCCCCCcceEEEEEEEcCCCc----e-EEEEeCCcceEEEcCCCCCCEEEEEEE
Confidence            44588899998899999999999  5665445899999998754422    1 223345668899999999999999999


Q ss_pred             EEecCCCCCCCCCcEEEeeccc
Q psy12061        573 AFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       573 a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      |+|..|.|++|.+ +.+++...
T Consensus        80 A~n~~G~g~~S~~-v~~~T~~~  100 (106)
T 1x4x_A           80 ALSVVGAGPFSEV-VACVTPPS  100 (106)
T ss_dssp             EECSSCCCCBCCC-EEEECCCC
T ss_pred             EEcCCcCCCCcCC-EEEECCCC
Confidence            9999999999965 45666543

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=7.5e-14  Score=110.79  Aligned_cols=115  Identities=19%  Similarity=0.228  Sum_probs=91.0

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEE-eeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSR-GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTT  450 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~-~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~  450 (626)
                      |.|.+|..+.+.|..+.|. +|.++.+. ..+.+++.|+|++|...+   +..|.+|.|+|+..... .+..   .....
T Consensus         1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~~sv~l~W~~p~~~g---g~~i~~Y~v~~~~~~~~~~~~~---~~~~~   73 (120)
T 2crm_A            1 GSSGSSGVVEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPKDNG---GATINKYVVEMAEGSNGNKWEM---IYSGA   73 (120)
T ss_dssp             CCCTTCSCCSCCSCCCCCC-CCCCCEEEEEEETTEEEEECCCCTTCC---SSCCCEEEEEEEESSSSCCCEE---EECSS
T ss_pred             CCCCCcCCEEEEeCCCCCC-CCCCCEEeeccCCCEEEEEECCCCcCC---CCeeeEEEEEEccCCCCcCCEE---EEecc
Confidence            5778888888888888887 77787776 788999999999887542   24689999999876552 2222   22345


Q ss_pred             cceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       451 ~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      ...+.+.+|+|++.|.|+|+|.|..|.|++|..+.++|....|+
T Consensus        74 ~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~p~  117 (120)
T 2crm_A           74 TREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP  117 (120)
T ss_dssp             CSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCCCCSCC
T ss_pred             ccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcCCCCCC
Confidence            66799999999999999999999999999999888888865543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.52  E-value=3.3e-13  Score=117.53  Aligned_cols=174  Identities=20%  Similarity=0.239  Sum_probs=106.7

Q ss_pred             CCceeeeCCCceEEec-CCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         80 GPSYYEQLPPKITIAA-HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~-g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      +|.+..  +....+.+ |++++|.|.+.+.|.+...+.|+|+|..+....        ....++.|.|.+++.+|+|.|+
T Consensus         3 ~P~i~~--~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~--------~~~~~~~L~i~~~~~~d~G~Y~   72 (190)
T 2wv3_A            3 EPRIVT--SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--------KNASNMEYRINKPRAEDSGEYH   72 (190)
T ss_dssp             CCEEEE--CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCC--------BCCSEEEEEESSCCGGGCEEEE
T ss_pred             CCcccc--cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccc--------eEeccEEEEEecCCcccCEEEE
Confidence            444433  44556666 999999999999887445779999999987542        1125578999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEeCCCCCCCce-EEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEee-cceeeee
Q psy12061        159 CVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS-EHVIGKE  236 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~~~P~~p~~~-~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~-~~~~~~~  236 (626)
                      |.+.|. |..+..+.|.|..+|...... .........+.|.|...   +.+...  +.|...++....... ..... .
T Consensus        73 C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~p~--i~W~~~~~g~~~~~~~~~~~~-~  145 (190)
T 2wv3_A           73 CVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSV---GYPHPE--WMWRKKENGVFEEISNSSGRF-F  145 (190)
T ss_dssp             EEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEE---CSSCCE--EEEEEEETTEEEECCCTTSCE-E
T ss_pred             EEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeC---ccCCCc--eEEEEcCCCceeeeecCCCeE-E
Confidence            999999 888999999999876421110 11233445566666642   111112  222211000000000 00000 0


Q ss_pred             eeccCCceeEEEEeecc-CCceEEEEEEEecCCccC
Q psy12061        237 VDRYTGRKEASIENVLV-PWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       237 ~~~~~~~~~~~i~~~l~-~~~~y~~~v~a~n~~g~~  271 (626)
                      .........+.+.+ +. ..+.+.|+|.|.|..|..
T Consensus       146 ~~~~~~~~~L~i~~-~~~~~d~G~Y~C~a~N~~g~~  180 (190)
T 2wv3_A          146 IINKENYTELNIVN-LQITEDPGEYECNATNSIGSA  180 (190)
T ss_dssp             EEECSSEEEEEECS-CCTTTSCEEEEEEEECSSCEE
T ss_pred             EecCCCeeEEEEEe-ccccCCCEEEEEEEEecCCcc
Confidence            00001112455555 88 799999999999998854

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=1.8e-13  Score=106.34  Aligned_cols=102  Identities=25%  Similarity=0.334  Sum_probs=83.0

Q ss_pred             ccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCce
Q psy12061        385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK  464 (626)
Q Consensus       385 t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  464 (626)
                      |.+.+|. +|.++++...+.+++.|+|++|...    +|.|.+|.|+|+..+.......  ........+.|.+|+|++.
T Consensus         3 T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~l~~L~p~t~   75 (108)
T 2djs_A            3 SGSSGPS-TVPIMHQVSATMRSITLSWPQPEQP----NGIILDYEIRYYEKEHNEFNSS--MARSQTNTARIDGLRPGMV   75 (108)
T ss_dssp             SCCCCCC-CCSCCEEEEECSSEEEEECCCCSCC----SSCEEEEEEEEEETTSCSTTCE--EEEESSSEEEEESCCTTCE
T ss_pred             cCCCCCC-CCcceEEEecCCCEEEEEECCCCCC----CCeEEEEEEEEEECCCCCccee--EEecCccEEEEcCCCCCCE
Confidence            5567777 8889999999999999999998643    3779999999988765433222  2234556799999999999


Q ss_pred             EEEEEEEeeCCCCCCCCccEEEeecCCCC
Q psy12061        465 YYVKVMAYNNAGEGPESERYLERTYRKAP  493 (626)
Q Consensus       465 Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p  493 (626)
                      |.|+|+|+|..|.|++|..+.++|.+...
T Consensus        76 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~~  104 (108)
T 2djs_A           76 YVVQVRARTVAGYGKFSGKMCFQTLTDSG  104 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCEEEECCCSSC
T ss_pred             EEEEEEEEeCCEECCCCCCEEEEeCCCCc
Confidence            99999999999999999999999987643

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=1.2e-13  Score=107.34  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             CCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCce----eeEEEEEEEeccCCccccceeeecCccceEEecCCCCCc
Q psy12061        490 RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPI----IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK  565 (626)
Q Consensus       490 ~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i----~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~  565 (626)
                      +..|+.+|.+|++..++.+++.|+|.  +|...++.+    .+|.|.|+.....   ...........+.+.|.||+|++
T Consensus         5 ~~~pp~~P~~l~~~~~s~tsi~lsW~--~p~~~~~~~~~~~~~Y~v~y~~~~~~---~~~~~~~~~~~~~~~i~gL~P~T   79 (113)
T 1x5j_A            5 SSGPMMPPVGVQASILSHDTIRITWA--DNSLPKHQKITDSRYYTVRWKTNIPA---NTKYKNANATTLSYLVTGLKPNT   79 (113)
T ss_dssp             SCCCCCCCEEEEEEEEETTEEEEEEE--CTTSCSSSCCCSSCEEEEEECBSSSS---SCCCEECCBCSSEEEEESCCTTC
T ss_pred             cCCCCCCCcceEEEEecCCEEEEEec--CCCCccccccCcCceEEEEEEECCCC---CeEEEEEecCcCEEEeCCCCCCc
Confidence            34567799999999999999999999  454444444    4999998763221   12223344577899999999999


Q ss_pred             eEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        566 RYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       566 ~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      .|.|+|+|+|..|.|++|.++. ++|.+
T Consensus        80 ~Y~f~V~A~~~~G~g~~S~~v~-~~T~~  106 (113)
T 1x5j_A           80 LYEFSVMVTKGRRSSTWSMTAH-GTTFE  106 (113)
T ss_dssp             EECCEEEEECSSCBCCCCCCCC-EECCC
T ss_pred             EEEEEEEEecCCccCCCcccEE-eeccC
Confidence            9999999999999999996654 55554

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.52  E-value=1.9e-12  Score=113.53  Aligned_cols=184  Identities=11%  Similarity=0.100  Sum_probs=111.0

Q ss_pred             CCceeEeecC-CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCC--ccee------eeeeeecceeeEEEEeCCCccee
Q psy12061        290 APSRIGGGGG-KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT--EFQS------ETLKEYGNVGIAVVRIPSEFYYT  360 (626)
Q Consensus       290 ~p~~~~~~~~-~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~L~p~~  360 (626)
                      .|.++..... ....+.+.|++  ..+...+...|.+.|...+..  ....      .............+.+..+...+
T Consensus         3 ~~~nlsC~~~~~~~~~~C~W~~--g~~~~l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~   80 (206)
T 3v6o_A            3 VNINISCETDGYLTKMTCRWST--STIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLS   80 (206)
T ss_dssp             -CCCCEEEECTTSSCEEEEECC--CC--------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTS
T ss_pred             CCEEEEEEECCCCcEEEEEecC--CCcCCcccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhcc
Confidence            4556776655 46899999998  333322222788888765410  0000      00000111234466777777789


Q ss_pred             EEEEEEEEecCCCCCCCCccEEEEccCCCCCCCCCceEEEee-ecceEEEEeeeccccccccceeeEEEEEEEEecCC-C
Q psy12061        361 EYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGF-NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-P  438 (626)
Q Consensus       361 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~-~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~-~  438 (626)
                      .|.|+|.|.|..|.+. |....+.....+.+.||.++.+... ..+.+.|+|++|...     .....|.|+|+..+. .
T Consensus        81 ~Y~~~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~-----~~~l~yev~y~~~~~~~  154 (206)
T 3v6o_A           81 GYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFP-----ENNLQFQIRYGLSGKEV  154 (206)
T ss_dssp             CEEEEEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC-------------CEEEEEEEEESSSSC
T ss_pred             cEEEEEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCC-----CCcEEEEEEEEECCCCC
Confidence            9999999999998765 5666666555555569999998765 578999999988643     125799999988763 2


Q ss_pred             ccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCc
Q psy12061        439 EETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE  482 (626)
Q Consensus       439 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~  482 (626)
                      .+... .........+.+.+|+|++.|.|+|+|.+..|.|.+|+
T Consensus       155 ~w~~~-~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSe  197 (206)
T 3v6o_A          155 QWKMY-EVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSN  197 (206)
T ss_dssp             CCEEE-EECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCC
T ss_pred             ceEEE-ecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCC
Confidence            33222 12222234588999999999999999999877776654

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.52  E-value=8.3e-14  Score=110.48  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=73.2

Q ss_pred             ecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCc-eeeEEEEEEEeccCCcccc-ceeeecCccceEEecCCCCCc
Q psy12061        488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP-IIGYKVRVWEVDQDMSRAN-DTIIPVGNTLDADIVDLSPGK  565 (626)
Q Consensus       488 t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~-i~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~L~p~~  565 (626)
                      +.+++|. +|.++.+...+.+ +.|+|+  +|...+|. |.+|.|+|+..+...+... ..+......+.+.|.+|+|++
T Consensus         3 s~~~~P~-~P~~~~~~~~~~t-v~l~W~--~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   78 (122)
T 2e3v_A            3 SGSSGPS-SPSIDQVEPYSST-AQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET   78 (122)
T ss_dssp             ---CCCC-CCEEEEEEECSSC-EEEEEE--CCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTC
T ss_pred             CCCcCCc-CCCccEEEecCCc-EEEEEC--CCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCC
Confidence            4566776 4899998888877 999999  66767777 9999999887654322111 111222467889999999999


Q ss_pred             eEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        566 RYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       566 ~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      .|.|+|+|+|..|.|++|.+.. +++.+
T Consensus        79 ~Y~~rV~A~n~~G~g~~S~~~~-~~t~~  105 (122)
T 2e3v_A           79 TYAVRLAALNGKGLGEISAASE-FKTQP  105 (122)
T ss_dssp             EEEEEEEEEETTEECCCCCCEE-EECCC
T ss_pred             EEEEEEEEEeCCccCCCccccc-ccccC
Confidence            9999999999999999997654 55544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.51  E-value=5.2e-14  Score=106.47  Aligned_cols=77  Identities=23%  Similarity=0.382  Sum_probs=67.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|  .|.|.|+|+|..+..+.++.+ .+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++
T Consensus        13 v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           13 VAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVL-IGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAA   89 (95)
T ss_dssp             ECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC-
T ss_pred             ECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEE-eCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCc
Confidence            578999999999987  579999999999988777766 46789999999999999999999999988888888886544

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.51  E-value=7e-14  Score=112.27  Aligned_cols=109  Identities=20%  Similarity=0.204  Sum_probs=83.8

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC--ccceEEEEecCccceEEEeCCccCce
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP--EETAVYYLSRTTRNWALIVGLQPDTK  464 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~  464 (626)
                      .+.|. +|.++++...+.+++.|+|+++.+.    ++.|.+|.|+|+.....  .+.... ........ .+.+|+|++.
T Consensus        14 ~~~P~-~P~~~~~~~~~~~sv~l~W~p~~~~----~~~i~~Y~v~~~~~~~~~~~w~~~~-~~~~~~~~-~i~~L~p~t~   86 (127)
T 1uey_A           14 YDVPN-PPFDLELTDQLDKSVQLSWTPGDDN----NSPITKFIIEYEDAMHKPGLWHHQT-EVSGTQTT-AQLNLSPYVN   86 (127)
T ss_dssp             CCSCC-CCEEEEEECCSSSCEEEEEECCCCC----SSCEEEEEEEEEBTTTCTTCEEEEE-EEESSCCE-EEECCCTTCE
T ss_pred             ecCCc-CCCCcEEEEccCCEEEEEEECCCCC----CCCceEEEEEEEECCCCCCccEEEe-eeCCCceE-EEecCCCCCE
Confidence            34565 8999999989999999999987533    36799999999776532  222222 22223333 5789999999


Q ss_pred             EEEEEEEeeCCCCCCCCcc-EEEeecCCCCCCCCceEEE
Q psy12061        465 YYVKVMAYNNAGEGPESER-YLERTYRKAPQKPPSAVHI  502 (626)
Q Consensus       465 Y~v~V~a~~~~g~s~~s~~-~~~~t~~~~p~~~p~~l~~  502 (626)
                      |.|+|+|.|..|.|++|.. ..++|.+..|..+|.++++
T Consensus        87 Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P~~~P~~v~~  125 (127)
T 1uey_A           87 YSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS  125 (127)
T ss_dssp             ECCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCCCC
T ss_pred             EEEEEEEEeCCccCCccccccceEcCCCCCCCCCceeEe
Confidence            9999999999999999987 4789999999888988754

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.51  E-value=1e-13  Score=110.60  Aligned_cols=110  Identities=25%  Similarity=0.373  Sum_probs=87.4

Q ss_pred             cCCCCCCCCccEEEEccCC------CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE
Q psy12061        370 NDVGPGPESEVVTIFSAED------MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV  443 (626)
Q Consensus       370 n~~g~~~~s~~~~~~t~~~------~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~  443 (626)
                      +..|.|++|..+.++|.+.      +|. +|.++++...+ +++.|+|++|...    +|.|.+|.|+|+. +..  ...
T Consensus         2 t~~G~g~~S~~~~~~T~~~~~~~~~~P~-~P~~l~~~~~~-~sv~l~W~~P~~~----~g~i~~Y~v~y~~-~~~--~~~   72 (126)
T 1x5i_A            2 SSGSSGPATDWLSAETFESDLDETRVPE-VPSSLHVRPLV-TSIVVSWTPPENQ----NIVVRGYAIGYGI-GSP--HAQ   72 (126)
T ss_dssp             CSCCCCCCCCCCCSCCCCTTSBCSSCCC-SCSEEEEEEET-TEEEEEEECCSCT----TBCCCEEEEEECS-SCG--GGE
T ss_pred             CCCccCCCCCCEEeECccccCccCCCCC-CCCeeEEEecC-CEEEEEEcCCCCC----CCCEeEEEEEEEc-CCC--Cce
Confidence            4578899999998999887      787 99999999886 9999999998643    3779999999873 221  222


Q ss_pred             EEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061        444 YYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       444 ~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      ..........++|.+|+|++.|.|+|+|+|..|.|+++... +.|.
T Consensus        73 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~-~~T~  117 (126)
T 1x5i_A           73 TIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES-AVTR  117 (126)
T ss_dssp             EEECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCC-EECC
T ss_pred             EEEeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeE-Eecc
Confidence            23345566779999999999999999999999999888643 4444

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=116.34  Aligned_cols=157  Identities=11%  Similarity=0.131  Sum_probs=107.5

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeC--CEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKD--GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~--~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      |.+|+++.|+|.+.. +.| .+.|...  +..+..+.     ....+.|.+++ +|.+.|.|.+..........+.|.|+
T Consensus        14 V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~g~-----~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy   86 (196)
T 3bn3_B           14 VERGGSLWLNCSTNC-PRPERGGLETSLRRNGTQRGL-----RWLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTF   86 (196)
T ss_dssp             EETTEEEEEEEEECC-SSCSEEEEECSSEEEEEEEET-----TEEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEE
T ss_pred             EcCCCeEEEEEeCCC-CCCCccEEEEccCCeeEcccc-----CceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEe
Confidence            578999999999964 455 6777642  22221110     01138899999 88888999988765567778899999


Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccC-CcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY  157 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y  157 (626)
                      .+|..+...+....+.+|+.++|.|.+.+.. ...++|+|+|+++.+........ ..........+.+......+...|
T Consensus        87 ~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~-~~~~~~~t~~~~~~~~r~D~g~~~  165 (196)
T 3bn3_B           87 QRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGE-PPRARGAVLTATVLARREDHGANF  165 (196)
T ss_dssp             BCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTS-CTTCCCEEEEEEEECCGGGTTCEE
T ss_pred             cCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccc-cccccceeEEEEEeeeeccCCCeE
Confidence            9988877666555589999999999999854 44567899999999875432110 000000113455555544445599


Q ss_pred             EEEEEeCCC
Q psy12061        158 ECVVKSTVG  166 (626)
Q Consensus       158 ~C~a~n~~g  166 (626)
                      +|.|.+..+
T Consensus       166 sC~A~l~l~  174 (196)
T 3bn3_B          166 SCRAELDLR  174 (196)
T ss_dssp             EEEEEEECG
T ss_pred             EEEEEccCC
Confidence            999998766

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-13  Score=107.09  Aligned_cols=96  Identities=22%  Similarity=0.378  Sum_probs=76.1

Q ss_pred             cCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEE
Q psy12061        489 YRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH  568 (626)
Q Consensus       489 ~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~  568 (626)
                      .+++|. +|.++++...+.+++.|+|+  +|...++.|.+|.|+|+..+....   .  ......+.+.|.+|.|++.|.
T Consensus         4 ~~~~P~-~P~~l~~~~~~~~si~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~---~--~~~~~~~~~~i~~L~p~t~Y~   75 (106)
T 2ed8_A            4 GSSGPG-PVENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGKE---Q--NIEVDGLSYKLEGLKKFTEYS   75 (106)
T ss_dssp             CCCCCC-CCEEEEEECSSTTEEEEEEE--CCSSCSSCCCEEEEEEEETTTCCE---E--EEEECSSCEEEESCCTTCEEE
T ss_pred             CCCCCc-CCceeEEEecCCCEEEEEEC--CCCCCCCCeeEEEEEEEECCCCce---E--EEeCCccEEEECCCCCCCEEE
Confidence            445665 88999999999999999999  566678899999999876554321   1  122346889999999999999


Q ss_pred             EEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        569 MRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       569 ~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      |+|+|+|..|.|++|.++ .+++.+
T Consensus        76 ~~V~A~n~~G~g~~S~~~-~~~T~~   99 (106)
T 2ed8_A           76 LRFLAYNRYGPGVSTDDI-TVVTLS   99 (106)
T ss_dssp             EEEEEECSSCEEEECCCE-EEECCC
T ss_pred             EEEEEEeCCccCCCcCCE-EEEcCC
Confidence            999999999999999664 455543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.51  E-value=3e-13  Score=118.68  Aligned_cols=170  Identities=19%  Similarity=0.229  Sum_probs=106.3

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCC--eEEEeecCCCCC
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGG--LLEITNASFADA  154 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~--~l~i~~~~~~d~  154 (626)
                      +|.+ ...|.+..+.+|++++|.|.+.+.|.+  .+.|+|++..+....      .++..   .++  .|.|.+++.+|+
T Consensus         4 ~P~~-~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~d~   74 (197)
T 2j8h_A            4 APHF-KEELRNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADG------LKYRIQEFKGGYHQLIIASVTDDDA   74 (197)
T ss_dssp             CCEE-EECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEECCCCS------SSEEEEEETTTEEEEEECSCCGGGC
T ss_pred             CCEE-EEcCCccEEcCCCEEEEEEEEeecCCC--EEEEEECCEECccCC------CcEEEEEcCCCEEEEEECcCCHHhC
Confidence            3444 446788999999999999999998876  469999999987532      22222   233  899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCC--CCc----eEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEe
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGL--PGG----VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV  228 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~--p~~----~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~  228 (626)
                      |.|+|.+.|..|..+..+.|.|..+|..  |..    -.........+.|.|....   .+..  .+        .|.+.
T Consensus        75 G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p--~i--------~W~~~  141 (197)
T 2j8h_A           75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG---KPDP--VI--------TWQKG  141 (197)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEE---ESCC--EE--------EEEES
T ss_pred             EEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEe---cCCC--cE--------EEEEC
Confidence            9999999999999888889988765432  111    1122233445566655321   1111  12        23322


Q ss_pred             ecceeeee---eeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        229 SEHVIGKE---VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       229 ~~~~~~~~---~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ...+....   .........+.+.+.+...+.+.|+|.|.|..|..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  187 (197)
T 2j8h_A          142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID  187 (197)
T ss_dssp             SCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEE
T ss_pred             CEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcE
Confidence            22111000   00001112333322277889999999999998854

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=108.45  Aligned_cols=95  Identities=20%  Similarity=0.323  Sum_probs=78.2

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cC-C--eEEEeecCCCCC
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DG-G--LLEITNASFADA  154 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~-~--~l~i~~~~~~d~  154 (626)
                      +|.++ ..|.+..+.+|++++|.|.+.+.|.|  .+.|++++..+....      .++..  .. +  .|.|.+++.+|+
T Consensus        15 ~p~f~-~~p~~~~v~~G~~v~L~C~~~g~p~p--~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~   85 (116)
T 2kkq_A           15 APMFI-YKPQSKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNT------DRISLYQDNTGRVTLLIKDVNKKDA   85 (116)
T ss_dssp             CCCBS-SCCCCEEEETTEEEEEEEEBCCBSCC--EEEEEETTEECCCCB------TTEEEEECTTCEEEEEEEEECGGGC
T ss_pred             CCeEE-eCCCcEEEeCCCcEEEEEEEeccCCC--EEEEEECCEECcCCC------CeEEEEeCCCCeEEEEECCCCcccC
Confidence            45554 45788999999999999999999887  569999999887432      23332  22 2  899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      |.|+|.|.|..|..+..+.|.|..+|.++
T Consensus        86 G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           86 GWYTVSAVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred             EEEEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence            99999999999999999999999888664

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.5e-14  Score=108.92  Aligned_cols=93  Identities=18%  Similarity=0.268  Sum_probs=74.8

Q ss_pred             EEEeecC-CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCC
Q psy12061        484 YLERTYR-KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLS  562 (626)
Q Consensus       484 ~~~~t~~-~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  562 (626)
                      +...|.+ .+|. +|.++++...+ +++.|+|+  +|.+.+|.|.+|.|+|+... .   ...........+.+.|.+|+
T Consensus         8 ~~~~t~e~~~P~-~P~~l~~~~~~-~sv~l~W~--~P~~~ng~i~gY~i~y~~~~-~---~~~~~~~~~~~~~~~l~~L~   79 (116)
T 2edb_A            8 PENDLDESQVPD-QPSSLHVRPQT-NCIIMSWT--PPLNPNIVVRGYIIGYGVGS-P---YAETVRVDSKQRYYSIERLE   79 (116)
T ss_dssp             SSSSCBCSSCCC-CCSCEEEEECS-SCEEEEEC--CCSCTTBCCCEEEEEEEESS-T---TSEEEEEETTCCEEEECSCC
T ss_pred             ccccCCCCCCCC-CCCCeEEEECC-CEEEEEEc--CCCCCCCceeEEEEEEEeCC-C---CeEEEEeCCCeeEEEeCCCC
Confidence            4455666 5565 89999999888 99999999  66677899999999987522 1   12334556778999999999


Q ss_pred             CCceEEEEEEEEecCCCCCCCC
Q psy12061        563 PGKRYHMRVLAFSNGGDGRMSS  584 (626)
Q Consensus       563 p~~~Y~~~V~a~~~~G~g~~s~  584 (626)
                      |++.|.|+|+|+|..|.|+++.
T Consensus        80 p~t~Y~~~V~A~n~~G~g~~~~  101 (116)
T 2edb_A           80 SSSHYVISLKAFNNAGEGVPLY  101 (116)
T ss_dssp             SSSBEEEEEEEEETTEECSCEE
T ss_pred             CCCEEEEEEEEEeCCccCCCCc
Confidence            9999999999999999998663

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.51  E-value=3e-14  Score=109.10  Aligned_cols=76  Identities=25%  Similarity=0.415  Sum_probs=65.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCc---EEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~---~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|+|..+..+.+   +.+. .+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        20 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            46899999999999999999999999999875433   2333 3447999999999999999999999999888888876

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=5.3e-14  Score=109.63  Aligned_cols=78  Identities=22%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             CCCCceEEEEeeeCCC---CCCeeEEEeCCE-Ecc--CCCcEEEcc---------CCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAA---PKPKFVWKKDGN-IIG--SGGRRKIFE---------NGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p~i~W~~~~~-~i~--~~~~~~~~~---------~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |.+|++++|.|.+.|.   |.|.|+|+|++. .+.  ...++.+..         +.+|+|.++..+|+|.|+|+|.|..
T Consensus        19 V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~   98 (126)
T 2dav_A           19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD   98 (126)
T ss_dssp             EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSS
T ss_pred             EeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCC
Confidence            5789999999999875   899999999752 111  234554421         3579999999999999999999999


Q ss_pred             CCceeeEEEEEEe
Q psy12061         67 GMDESKGRLIVLH   79 (626)
Q Consensus        67 g~~~~~~~l~v~~   79 (626)
                      |...+.+.|.|..
T Consensus        99 g~~~~~~~L~V~~  111 (126)
T 2dav_A           99 KFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEECCEEEEEC
T ss_pred             CcEEEEEEEEEEe
Confidence            9999999999988

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.50  E-value=6.5e-14  Score=122.32  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             CceEEecCCcEEEEEE---ecccCCcceeEEEeeCCEEeccccC----------CccCCCeeE----ecCCeEEEeecCC
Q psy12061         89 PKITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRIGNMDL----------NELETPNIN----IDGGLLEITNASF  151 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~---~~~~p~p~~~i~W~~~~~~~~~~~~----------~~~~~~~~~----~~~~~l~i~~~~~  151 (626)
                      +++++..|++++|.|.   +.+.|.|  .+.|+|+|..+.....          ......++.    .+...|.|.+++.
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~--~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   78 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEI--EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI   78 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTS--EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCG
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCc--EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCH
Confidence            3568899999999996   4556665  5699998753321100          000011111    1335799999999


Q ss_pred             CCCEeEEEEEEeCCCceEEEEEEEEeCCCCC-------------CCceEEEEEeccceEEEEecCCCCCCcccEEEEEEe
Q psy12061        152 ADAGEYECVVKSTVGKISTKTTVIVEGPPGL-------------PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR  218 (626)
Q Consensus       152 ~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~-------------p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~  218 (626)
                      +|+|.|+|.|.|..|..+..+.|.|..||..             ...+.|...+.....+.|.....  .......    
T Consensus        79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~--~~~~~~~----  152 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG--VEPAPTA----  152 (203)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC---------------
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCe--eecCccc----
Confidence            9999999999999999999999998765532             22344444444445555542110  0000000    


Q ss_pred             ecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        219 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       219 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                               ......    ....+.........+.+.+.+.|+|.|.|..|..
T Consensus       153 ---------~~~r~~----~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          153 ---------ANGGVM----KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             ------------CCE----ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred             ---------ccceEE----EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence                     000000    0002222222223388999999999999999965

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=108.71  Aligned_cols=109  Identities=22%  Similarity=0.282  Sum_probs=78.6

Q ss_pred             ccCCCCCCCCCceEEEeeecceEEEEeeecccccccccee-eEEEEEEEEecCCCccceEEE--EecCccceEEEeCCcc
Q psy12061        385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGR-LIGHRIKYWKEDNPEETAVYY--LSRTTRNWALIVGLQP  461 (626)
Q Consensus       385 t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~-i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p  461 (626)
                      +.+++|. +|.++.+...+.+ +.|+|++|...    +|. |.+|.|+|+......+.....  ........++|.+|+|
T Consensus         3 s~~~~P~-~P~~~~~~~~~~t-v~l~W~~P~~~----~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   76 (122)
T 2e3v_A            3 SGSSGPS-SPSIDQVEPYSST-AQVQFDEPEAT----GGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP   76 (122)
T ss_dssp             ---CCCC-CCEEEEEEECSSC-EEEEEECCCCC------CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCT
T ss_pred             CCCcCCc-CCCccEEEecCCc-EEEEECCCCcC----CCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCC
Confidence            3466787 5899999888877 99999998543    366 999999998877654422211  1224456799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEeecCCCCCCCCce
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA  499 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p~~  499 (626)
                      ++.|.|+|+|+|..|.|++|....++|....++.+|..
T Consensus        77 ~t~Y~~rV~A~n~~G~g~~S~~~~~~t~~~~~P~~P~~  114 (122)
T 2e3v_A           77 ETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKL  114 (122)
T ss_dssp             TCEEEEEEEEEETTEECCCCCCEEEECCCCCCCC----
T ss_pred             CCEEEEEEEEEeCCccCCCcccccccccCCCCCCCCee
Confidence            99999999999999999999998887765545556643

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.50  E-value=2.2e-13  Score=109.30  Aligned_cols=112  Identities=17%  Similarity=0.254  Sum_probs=79.7

Q ss_pred             CCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccccee-eecCccceE
Q psy12061        478 GPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI-IPVGNTLDA  556 (626)
Q Consensus       478 s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~-~~~~~~~~~  556 (626)
                      +..|..+.+... ..| .+|.++.+...+.+++.|+|+  ++.++++.|.+|.|+|+....... .+... ......+. 
T Consensus         3 s~~s~~~~~~v~-~~P-~~P~~~~~~~~~~~sv~l~W~--p~~~~~~~i~~Y~v~~~~~~~~~~-~w~~~~~~~~~~~~-   76 (127)
T 1uey_A            3 SGSSGPTPAPVY-DVP-NPPFDLELTDQLDKSVQLSWT--PGDDNNSPITKFIIEYEDAMHKPG-LWHHQTEVSGTQTT-   76 (127)
T ss_dssp             CCCCCCCCCCCC-CSC-CCCEEEEEECCSSSCEEEEEE--CCCCCSSCEEEEEEEEEBTTTCTT-CEEEEEEEESSCCE-
T ss_pred             CCCcEEEEEEee-cCC-cCCCCcEEEEccCCEEEEEEE--CCCCCCCCceEEEEEEEECCCCCC-ccEEEeeeCCCceE-
Confidence            344444444332 344 589999999889999999999  567788999999999876542211 12222 22334444 


Q ss_pred             EecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecccc
Q psy12061        557 DIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK  595 (626)
Q Consensus       557 ~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~  595 (626)
                      .+.+|.|++.|.|+|+|+|..|.|++|.+...+++....
T Consensus        77 ~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~  115 (127)
T 1uey_A           77 AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASE  115 (127)
T ss_dssp             EEECCCTTCEECCEEEEEESSCBCCCCSCCCCEECCCSS
T ss_pred             EEecCCCCCEEEEEEEEEeCCccCCccccccceEcCCCC
Confidence            577999999999999999999999999875556666543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.50  E-value=5.3e-14  Score=122.94  Aligned_cols=165  Identities=18%  Similarity=0.243  Sum_probs=106.0

Q ss_pred             eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEE
Q psy12061         83 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        83 ~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .+..++....+.+|++++|.|.+.+.|.+  .+.|++++..+....      .++.  ..+..|.|.+++..|+|.|+|.
T Consensus         9 ~i~~~~~~~~~~~G~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (192)
T 2iep_A            9 VITTPLETVDALVEEVATFMCAVESYPQP--EISWTRNKILIKLFD------TRYSIRENGQLLTILSVEDSDDGIYCCT   80 (192)
T ss_dssp             EESSCCCEEEEETTSCEEEECCEEEESCC--EEEEEETTEECCTTC------TTEEEEGGGTEEEESSCCGGGCEEEEEE
T ss_pred             eeecCccceeeeCCCcEEEEeeCCCCCCC--eEEEEECCEEccccC------ccEEEcCCccEEEEcCCCcccCeEEEEE
Confidence            34456788899999999999999998876  569999999886532      2333  3456799999999999999999


Q ss_pred             EEeCCCc-eEEEEEEEEeCCCCC---CCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeee
Q psy12061        161 VKSTVGK-ISTKTTVIVEGPPGL---PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE  236 (626)
Q Consensus       161 a~n~~g~-~~~~~~l~v~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~  236 (626)
                      +.|..|. .+..+.|.|..+|..   |....  ......+.|.|...             ..+.....|.+....+....
T Consensus        81 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~--~~~g~~~~l~C~~~-------------g~p~~~v~W~~~~~~~~~~~  145 (192)
T 2iep_A           81 ANNGVGGAVESCGALQVKMKPKITRPPINVK--IIEGLKAVLPCTTM-------------GNPKPSVSWIKGDSALRENS  145 (192)
T ss_dssp             EECSSSCCEEEEEEEEEEEEEEEEECCCCEE--EETTSCEEECCEEE-------------EESCCEEEEEETTEECCCCS
T ss_pred             EEcCCCceeEeEEEEEEEeCCccccCCcceE--EeCCCcEEEEEEEe-------------ccCCceEEEEeCCEEccCCC
Confidence            9999887 466677777765532   22221  22334455555421             11111122333222111110


Q ss_pred             eeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       237 ~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      .........+.+.+ +...+.+.|+|.|.|..|..
T Consensus       146 ~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~  179 (192)
T 2iep_A          146 RIAVLESGSLRIHN-VQKEDAGQYRCVAKNSLGTA  179 (192)
T ss_dssp             SEEECTTSCEEESS-CCGGGCEEEEEEEEETTEEE
T ss_pred             cEEEecCCcEEEec-CChhhCEEEEEEEEcCCCcE
Confidence            00111222456655 88899999999999998865

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=106.19  Aligned_cols=100  Identities=20%  Similarity=0.288  Sum_probs=82.1

Q ss_pred             cCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceE
Q psy12061        386 AEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKY  465 (626)
Q Consensus       386 ~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  465 (626)
                      ..++|. +|.++++...+.+++.|+|++|...    ++.|.+|.|+|+..+...+...    ......+.|.+|+|++.|
T Consensus         4 ~~~~P~-~P~~l~~~~~~~~si~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y   74 (106)
T 2ed8_A            4 GSSGPG-PVENLQAVSTSPTSILITWEPPAYA----NGPVQGYRLFCTEVSTGKEQNI----EVDGLSYKLEGLKKFTEY   74 (106)
T ss_dssp             CCCCCC-CCEEEEEECSSTTEEEEEEECCSSC----SSCCCEEEEEEEETTTCCEEEE----EECSSCEEEESCCTTCEE
T ss_pred             CCCCCc-CCceeEEEecCCCEEEEEECCCCCC----CCCeeEEEEEEEECCCCceEEE----eCCccEEEECCCCCCCEE
Confidence            355676 8999999999999999999998643    3679999999987665433221    123566999999999999


Q ss_pred             EEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        466 YVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       466 ~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .|+|+|+|..|.|++|..+.++|.++.|+
T Consensus        75 ~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  103 (106)
T 2ed8_A           75 SLRFLAYNRYGPGVSTDDITVVTLSDSGP  103 (106)
T ss_dssp             EEEEEEECSSCEEEECCCEEEECCCCCCC
T ss_pred             EEEEEEEeCCccCCCcCCEEEEcCCCCCC
Confidence            99999999999999999999999988764

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8e-14  Score=108.83  Aligned_cols=96  Identities=20%  Similarity=0.344  Sum_probs=78.5

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--c-CC--eEEEeecCCCCC
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--D-GG--LLEITNASFADA  154 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~-~~--~l~i~~~~~~d~  154 (626)
                      +|.+. ..+....+.+|++++|.|.+.+.|.|  .+.|+|++..+....      .++.+  . ++  .|.|.+++.+|+
T Consensus         8 ~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~   78 (110)
T 2dm2_A            8 APFFE-MKLKHYKIFEGMPVTFTCRVAGNPKP--KIYWFKDGKQISPKS------DHYTIQRDLDGTCSLHTTASTLDDD   78 (110)
T ss_dssp             CCCBS-SCCCCEEEETTCCEEEEEEBCCSSCC--EEEEECSSCBCCTTC------SSEEEEECTTCEEEEEESSCCTTTC
T ss_pred             CCEEE-ecCcCeEEeCCCeEEEEEEEEecCCC--EEEEEECCEECCCCC------CeEEEEECCCcEEEEEECCCChhhC
Confidence            44444 45788999999999999999998876  569999999886532      23322  1 23  699999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |.|+|.|.|..|..+..+.|.|..+|.+|.
T Consensus        79 G~Y~C~a~N~~g~~~~~~~l~V~~~~~~P~  108 (110)
T 2dm2_A           79 GNYTIMAANPQGRISCTGRLMVQAVNSGPS  108 (110)
T ss_dssp             SCCEEEEECTTCCEEECCCEEEECCSCCSS
T ss_pred             EEEEEEEEECCCeEEEEEEEEEECCCCCCC
Confidence            999999999999999999999999998875

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=110.15  Aligned_cols=77  Identities=22%  Similarity=0.330  Sum_probs=67.4

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.+.|.+ .+.|+|||.+|..+.|+.+..+|   +|.|.+++.+|+|.|+|.|.|    ....+.|.|
T Consensus        20 v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a~L~V   95 (104)
T 2eny_A           20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG----LTSKASLIV   95 (104)
T ss_dssp             EESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT----EEEEECEEE
T ss_pred             EcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC----eeEEEEEEE
Confidence            5689999999999998754 89999999999988888887766   699999999999999999844    578899999


Q ss_pred             EeCCc
Q psy12061         78 LHGPS   82 (626)
Q Consensus        78 ~~~p~   82 (626)
                      ..+|.
T Consensus        96 ~~~p~  100 (104)
T 2eny_A           96 RERSG  100 (104)
T ss_dssp             ECCCS
T ss_pred             eCCCc
Confidence            87764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.49  E-value=3.9e-13  Score=117.99  Aligned_cols=170  Identities=18%  Similarity=0.299  Sum_probs=106.4

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC--CeEEEeecCCCCCEeE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG--GLLEITNASFADAGEY  157 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y  157 (626)
                      +|.+ ...+.+..+.+|++++|.|.+.+.|.+  .+.|+|++..+.....     ..+...+  ..|.|.+++.+|+|.|
T Consensus         7 ~P~~-~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y   78 (197)
T 3lcy_A            7 APGI-RKEMKDVTTKLGEAAQLSCQIVGRPLP--DIKWYRFGKELIQSRK-----YKMSSDGRTHTLTVMTEEQEDEGVY   78 (197)
T ss_dssp             EEEE-EECCCCEEEETTSEEEEEEEEEEESCC--EEEEEETTEEECCCSS-----EEEEESSSEEEEEEECCSGGGCEEE
T ss_pred             CCcc-cccCCceEEeCCCcEEEEEEEecCCCC--EEEEEECCEECCCCcc-----EEEEeCCCEEEEEEecCCccCCEEE
Confidence            3444 445788999999999999999998876  5699999999865421     1222222  2799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeCCCCCCC----ceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeeccee
Q psy12061        158 ECVVKSTVGKISTKTTVIVEGPPGLPG----GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI  233 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~~~P~~p~----~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~  233 (626)
                      +|.+.|..|.....+.|.|..+|....    ...........+.|.|....   .+...  +        .|.+....+.
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~---~p~p~--v--------~W~~~~~~~~  145 (197)
T 3lcy_A           79 TCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG---RPVPA--M--------TWFHGQKLLQ  145 (197)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEE---ESCCE--E--------EEEETTEECC
T ss_pred             EEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEee---eeCCe--e--------EEeECCEECC
Confidence            999999999988888888876553221    12222334455666665321   11111  2        2222111110


Q ss_pred             eee---eeccCCceeEEEEeeccC-CceEEEEEEEecCCccC
Q psy12061        234 GKE---VDRYTGRKEASIENVLVP-WSTYEFKVIAGNELGYG  271 (626)
Q Consensus       234 ~~~---~~~~~~~~~~~i~~~l~~-~~~y~~~v~a~n~~g~~  271 (626)
                      ...   .........+.+.+ +.. .+.+.|+|.|.|..|..
T Consensus       146 ~~~~~~~~~~~~~~~L~i~~-~~~~~d~G~Y~C~a~n~~g~~  186 (197)
T 3lcy_A          146 NSENITIENTEHYTHLVMKN-VQRKTHAGKYKVQLSNVFGTV  186 (197)
T ss_dssp             CCSSEEEEECSSEEEEEESS-CCHHHHCEEEEEEEECSSCEE
T ss_pred             CCCceEEEEcCCEEEEEEcc-ccchhhCceEEEEEEcCcCce
Confidence            000   00001112344444 664 78999999999998854

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=105.79  Aligned_cols=99  Identities=21%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             CCCCCCCCCceEEEe--eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCce
Q psy12061        387 EDMPQVAPQGVFSRG--FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK  464 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~--~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  464 (626)
                      ..+|. +|.++++..  .+.+++.|+|++|...    ++.|.+|.|+|+......+...    ......+.+.+|+|++.
T Consensus         5 ~~~P~-~P~~l~~~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~----~~~~~~~~l~~L~p~t~   75 (108)
T 2dm4_A            5 SSGPD-APRNLQLSLPREAEGVIVGHWAPPIHT----HGLIREYIVEYSRSGSKMWASQ----RAASNFTEIKNLLVNTL   75 (108)
T ss_dssp             CCCTT-SCEEEEEECCTTCSSCEEEEEECCSCC----SSCEEEEEEEEEETTCSCCEEE----EESSSEEEECSCCSSCE
T ss_pred             CCCCc-CCcCeEEEEeccCCCEEEEEEcCCCCC----CCcEEEEEEEEEECCCCCeEEe----cCCccEEEeCCCCCCCE
Confidence            45676 899998776  5788999999998733    3779999999988765443322    22345799999999999


Q ss_pred             EEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        465 YYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       465 Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      |.|+|+|+|..|.|++|..+.++|.++.|+
T Consensus        76 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  105 (108)
T 2dm4_A           76 YTVRVAAVTSRGIGNWSDSKSITTIKGSGP  105 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCEEEECCSCSSC
T ss_pred             EEEEEEEECCCceeCCCCCEEEECCCCCCC
Confidence            999999999999999999999999888776

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.1e-14  Score=110.57  Aligned_cols=78  Identities=23%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             CCCCceEEEEeeeCCC---CCCeeEEEeCC-EEccC--CCcEEEcc---------CCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAA---PKPKFVWKKDG-NIIGS--GGRRKIFE---------NGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p~i~W~~~~-~~i~~--~~~~~~~~---------~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |.+|++++|.|.+.|.   |.|.|+|+|++ ..+..  +.++.+..         +++|.|.+|..+|+|.|+|+|+|..
T Consensus        24 V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~  103 (118)
T 2edn_A           24 VETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKD  103 (118)
T ss_dssp             EETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSS
T ss_pred             EeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcC
Confidence            5789999999999875   78999999975 22321  23444421         3579999999999999999999999


Q ss_pred             CCceeeEEEEEEe
Q psy12061         67 GMDESKGRLIVLH   79 (626)
Q Consensus        67 g~~~~~~~l~v~~   79 (626)
                      |...+.+.|.|..
T Consensus       104 g~~s~~~~L~V~~  116 (118)
T 2edn_A          104 TCDSCGFNIDVEA  116 (118)
T ss_dssp             CEEEEEECCEEEC
T ss_pred             CcEEEEEEEEEEc
Confidence            9999999999965

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-13  Score=105.50  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             CCCCCCCCceEEEee--eCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceE
Q psy12061        490 RKAPQKPPSAVHIKG--INPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY  567 (626)
Q Consensus       490 ~~~p~~~p~~l~~~~--~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y  567 (626)
                      +..|. +|.++++..  .+.+++.|+|+  +|.+.++.|.+|.|+|+..+...   +...  ....+.+.|.+|.|++.|
T Consensus         5 ~~~P~-~P~~l~~~~~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~---~~~~--~~~~~~~~l~~L~p~t~Y   76 (108)
T 2dm4_A            5 SSGPD-APRNLQLSLPREAEGVIVGHWA--PPIHTHGLIREYIVEYSRSGSKM---WASQ--RAASNFTEIKNLLVNTLY   76 (108)
T ss_dssp             CCCTT-SCEEEEEECCTTCSSCEEEEEE--CCSCCSSCEEEEEEEEEETTCSC---CEEE--EESSSEEEECSCCSSCEE
T ss_pred             CCCCc-CCcCeEEEEeccCCCEEEEEEc--CCCCCCCcEEEEEEEEEECCCCC---eEEe--cCCccEEEeCCCCCCCEE
Confidence            44565 889998766  57899999999  56678899999999987765431   1111  335679999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        568 HMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       568 ~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      .|+|+|+|..|.|++|+++ .+++.
T Consensus        77 ~~~V~A~n~~G~g~~S~~~-~~~T~  100 (108)
T 2dm4_A           77 TVRVAAVTSRGIGNWSDSK-SITTI  100 (108)
T ss_dssp             EEEEEEEESSCEEEECCCE-EEECC
T ss_pred             EEEEEEECCCceeCCCCCE-EEECC
Confidence            9999999999999999764 45554

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.1e-13  Score=106.01  Aligned_cols=77  Identities=17%  Similarity=0.221  Sum_probs=65.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCC----------cEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----------RRKIFENG---NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~----------~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      |.+|++++|.|.+++  .|.+.|+|||.+|..+.          |+.+..+|   +|.|.+++.+|+|.|+|..-   +.
T Consensus        20 v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~---~~   94 (112)
T 2e6q_A           20 VYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSC---PG   94 (112)
T ss_dssp             EETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEE---TT
T ss_pred             EcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEE---CC
Confidence            568999999999998  77999999999999877          99998887   69999999999999977333   34


Q ss_pred             ceeeEEEEEEeCCce
Q psy12061         69 DESKGRLIVLHGPSY   83 (626)
Q Consensus        69 ~~~~~~l~v~~~p~~   83 (626)
                      ..++|.|.|..+|..
T Consensus        95 ~~ssA~L~V~~~p~~  109 (112)
T 2e6q_A           95 VQDSAALTIQESSGP  109 (112)
T ss_dssp             EEEEEEEEEECSSCS
T ss_pred             eeEEEEEEEeCCCcc
Confidence            567899999887754

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.48  E-value=1.6e-13  Score=106.90  Aligned_cols=98  Identities=19%  Similarity=0.310  Sum_probs=73.8

Q ss_pred             cCCCCCCCCceEEE-eeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceE
Q psy12061        489 YRKAPQKPPSAVHI-KGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY  567 (626)
Q Consensus       489 ~~~~p~~~p~~l~~-~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y  567 (626)
                      ....| .+|.++.+ ...+.+++.|+|++ +..++++.|.+|.|+|+..+..    .+........+.+.+.+|.|++.|
T Consensus         5 ~~~~P-~~P~~~~~~~~~~~~sv~l~W~~-P~~~~~~~i~~Y~v~~~~~~~~----~~~~~~~~~~~~~~v~~L~p~t~Y   78 (110)
T 2crz_A            5 SSGPP-GPCLPPRLQGRPKAKEIQLRWGP-PLVDGGSPISCYSVEMSPIEKD----EPREVYQGSEVECTVSSLLPGKTY   78 (110)
T ss_dssp             CCCCC-CCCCCCEECSCCCSSEEEEECCC-CSCCTTSCCCEEEEEEECTTSC----CCEEEEEESCSEEEEESCCTTCEE
T ss_pred             cCCCC-CCCCCceeccccCCCEEEEEeCC-CCCCCCceeEEEEEEEEeCCCC----ceEEEEeCCcEEEEECCcCCCCEE
Confidence            33444 58888888 56788999999983 3345678899999998754433    222333456789999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        568 HMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       568 ~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      .|+|+|+|..|.|++|+++. +++..
T Consensus        79 ~frV~A~n~~G~g~~S~~~~-~~T~~  103 (110)
T 2crz_A           79 SFRLRAANKMGFGPFSEKCD-ITTAP  103 (110)
T ss_dssp             EECCEEECSSCBCCCCCCEE-EECCC
T ss_pred             EEEEEEEcCCccCCCCCccc-cccCC
Confidence            99999999999999997654 55543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.48  E-value=6.9e-14  Score=108.53  Aligned_cols=77  Identities=22%  Similarity=0.256  Sum_probs=62.4

Q ss_pred             CCCCceEEEEeeeCCCCC---CeeEEEeCCEEc-c--CCCcEEEc---------cCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK---PKFVWKKDGNII-G--SGGRRKIF---------ENGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~---p~i~W~~~~~~i-~--~~~~~~~~---------~~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |.+|++++|.|.+.|.|.   |.|.|+|++... .  ...++.+.         .+++|.|.+++.+|+|.|+|.|.|..
T Consensus        16 v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   95 (108)
T 3cx2_A           16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKD   95 (108)
T ss_dssp             EETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCC
Confidence            568999999999999998   999999987322 2  12344432         13479999999999999999999999


Q ss_pred             CCceeeEEEEEE
Q psy12061         67 GMDESKGRLIVL   78 (626)
Q Consensus        67 g~~~~~~~l~v~   78 (626)
                      |...+.+.|.|.
T Consensus        96 G~~~~~~~L~V~  107 (108)
T 3cx2_A           96 KFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             CceEEEEEEEEe
Confidence            999999999884

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.48  E-value=4.6e-13  Score=102.23  Aligned_cols=89  Identities=21%  Similarity=0.352  Sum_probs=73.5

Q ss_pred             CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       494 ~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      +.+|.+|++...+.+++.|+|+  +|.+.++.|.+|.|.|+..+....  ........+.+++.|.+|+|++.|.|+|+|
T Consensus         8 ~~~P~~l~v~~~t~~Sv~lsW~--~p~~~~g~i~~Y~v~y~~~~~~~~--~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A   83 (103)
T 3t04_D            8 SSVPTKLEVVDATPTSLKISWD--AYYSSWQNVKYYRITYGETGGDSP--VQEFTVPGYYSTATISGLKPGVDYTITVYA   83 (103)
T ss_dssp             CCCCCSCEEEEEETTEEEEECT--TTTTTSCCCCEEEEEEEETTCSSC--CEEEEEETTCCEEEECSCCTTCCEEEEEEE
T ss_pred             CCCCceeEEEecCCCEEEEEcc--CCCCCCCccceEEEEEEECCCCCc--cEEEEcCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            4588999999999999999999  566678999999999987643211  233455667899999999999999999999


Q ss_pred             Eec--CCCCCCCCCcE
Q psy12061        574 FSN--GGDGRMSSPAI  587 (626)
Q Consensus       574 ~~~--~G~g~~s~~~~  587 (626)
                      .|.  .|.|+ |+|+.
T Consensus        84 ~~~~~~G~~~-S~p~~   98 (103)
T 3t04_D           84 YDTFFPGYEP-NSPIS   98 (103)
T ss_dssp             ESCCCTTCCC-SCCEE
T ss_pred             EeCCCCCCCC-CCCEE
Confidence            999  99998 76653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.4e-14  Score=113.28  Aligned_cols=81  Identities=35%  Similarity=0.636  Sum_probs=70.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc--cCC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~--~~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+....+..+.  .++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        21 v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  100 (110)
T 2dm3_A           21 VQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV  100 (110)
T ss_dssp             EESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEE
T ss_pred             EeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEE
Confidence            568999999999999999999999999998766554433  333  7999999999999999999999999888999999


Q ss_pred             EeCCc
Q psy12061         78 LHGPS   82 (626)
Q Consensus        78 ~~~p~   82 (626)
                      ..+|.
T Consensus       101 ~~~p~  105 (110)
T 2dm3_A          101 AAKES  105 (110)
T ss_dssp             ECCCC
T ss_pred             eCCCC
Confidence            77653

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=6.9e-14  Score=107.58  Aligned_cols=76  Identities=28%  Similarity=0.377  Sum_probs=65.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCC--cEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~--~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.+ |.|.|.|+|||..|..+.  ++.+..++   +|.|.+++.+|+|.|+|.|.|    ....+.|.
T Consensus        19 v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~   93 (103)
T 1x44_A           19 AYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLS   93 (103)
T ss_dssp             EETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEE
T ss_pred             EECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEE
Confidence            568999999999988 779999999999998776  66777653   699999999999999999987    47778898


Q ss_pred             EEeCCc
Q psy12061         77 VLHGPS   82 (626)
Q Consensus        77 v~~~p~   82 (626)
                      |..+|.
T Consensus        94 V~~~p~   99 (103)
T 1x44_A           94 VDLKSG   99 (103)
T ss_dssp             EECCCS
T ss_pred             EeCCCC
Confidence            877653

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.48  E-value=7e-13  Score=116.77  Aligned_cols=166  Identities=16%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCC---cceeEEEeeCCEEeccccCCccCCCeeEe-------cCCeEEEeecCCCCC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEEL---LDVAYIWTHNGVRIGNMDLNELETPNINI-------DGGLLEITNASFADA  154 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~  154 (626)
                      ..++..+.+.+|++++|.|.+.+.|.   ..+.+.|+|++.......      .+...       ....|.|.+++.+|+
T Consensus         6 ~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~------~r~~~~~~~~~~~~~~L~I~~v~~~D~   79 (202)
T 3bp6_B            6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS------ERATLLEEQLPLGKALFHIPSVQVRDS   79 (202)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBC------SSCEECGGGGGGTEEEEEECSCCGGGC
T ss_pred             ecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccC------CceEEeeccccCCeeEEEECCCCHHHC
Confidence            34566789999999999999999874   124679999444332211      22222       236899999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCCCCCceEE-EEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeeccee
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV-VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI  233 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~  233 (626)
                      |.|+|.+.|..|..+..+.|.|..+|..|.. .+ .......+.|.|...   +.+..  .|.        |.+......
T Consensus        80 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~---g~P~p--~v~--------W~~~~~~~~  145 (202)
T 3bp6_B           80 GQYRCLVICGAAWDYKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQAR---GYPLA--EVS--------WQNVSVPAN  145 (202)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEE---EBSCC--EEE--------ETTCCSCCE
T ss_pred             cEEEEEEEeCCCcceEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEcc---ccCCc--eEE--------EEeCCCCcc
Confidence            9999999999998888999999887755422 22 222344555555531   11111  122        222111111


Q ss_pred             eeeeeccCCcee-EEEEeeccCCceEEEEEEEecCCccC
Q psy12061        234 GKEVDRYTGRKE-ASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       234 ~~~~~~~~~~~~-~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ........+... ..+.. +...+.+.|+|.|.|..|..
T Consensus       146 ~~~~~~~~~~~~~~~i~~-v~~~d~G~Y~C~a~N~~g~~  183 (202)
T 3bp6_B          146 TSHIRTPEGLYQVTSVLR-LKPQPSRNFSCMFWNAHMKE  183 (202)
T ss_dssp             EEEEECTTSCEEEEEEEE-ECCCTTCCEEEEEEETTTTE
T ss_pred             CceeeCCCCCEEEEEEEE-EEcCCCCEEEEEEEcCCccc
Confidence            111111112212 23334 78888999999999998854

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.5e-13  Score=103.93  Aligned_cols=91  Identities=27%  Similarity=0.421  Sum_probs=75.6

Q ss_pred             ceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCee-EecCCeEEEeecCCCCCEeEEEE
Q psy12061         82 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI-NIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        82 ~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      +.+...|....+..|++++|.|.+.+.|.|.  +.|+|++..+....      .++ ...++.|.|.+++.+|+|.|+|.
T Consensus         9 P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~--v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            9 PIILQGPANQTLAVDGTALLKCKATGDPLPV--ISWLKEGFTFPGRD------PRATIQEQGTLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             CEEEECCCCEEEESSSEEEECCEEECSSCCE--EEEEESSSEESSSC------SSCEECTTCCEEEESCCTTTCCEEEEE
T ss_pred             CEEEeCcCCEEEcCCCcEEEEEEEEEcCCCE--EEEEECCEECCCCC------CCEEEcCCCEEEEccCCcccCEEEEEE
Confidence            3444567888999999999999999998874  69999999887432      222 23567899999999999999999


Q ss_pred             EEeCCCceEEEEEEEEeCCC
Q psy12061        161 VKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~~~P  180 (626)
                      |.|..|..+..+.|.|..+|
T Consensus        81 a~n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           81 ATSSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             EECSSCCCBCCEEEEEESCC
T ss_pred             EEcCCCCEEEEEEEEEecCC
Confidence            99999999999999998764

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.48  E-value=2.8e-13  Score=104.44  Aligned_cols=99  Identities=20%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      ...|. +|.++++...+.+++.|+|++|...+    +.|.+|.|+|+..... .. .  ........+.+.+|+|++.|.
T Consensus         5 ~~~P~-~P~~~~~~~~s~~sv~l~W~~p~~~g----~~i~~Y~v~~~~~~~~-~~-~--~~~~~~~~~~v~~L~p~t~Y~   75 (106)
T 1x4x_A            5 SSGPD-QCKPPQVTCRSATCAQVNWEVPLSNG----TDVTEYRLEWGGVEGS-MQ-I--CYCGPGLSYEIKGLSPATTYY   75 (106)
T ss_dssp             CCSCC-CCCCCCCEEEETTEEEEECCCCSCSS----SCCCEEEEEEESSTTS-CC-E--EEEESCSEEEEESCCSSCEEE
T ss_pred             CCCcC-CCCCCEEEEcCCCEEEEEEcCCCCCC----CcceEEEEEEEcCCCc-eE-E--EEeCCcceEEEcCCCCCCEEE
Confidence            44444 88899999999999999999887522    3699999999765432 21 1  122344669999999999999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      |+|+|.|..|.|++|..+.++|.+..|.
T Consensus        76 frV~A~n~~G~g~~S~~v~~~T~~~~P~  103 (106)
T 1x4x_A           76 CRVQALSVVGAGPFSEVVACVTPPSSGP  103 (106)
T ss_dssp             EEEEEECSSCCCCBCCCEEEECCCCCSC
T ss_pred             EEEEEEcCCcCCCCcCCEEEECCCCCcC
Confidence            9999999999999999999999987775

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=109.14  Aligned_cols=111  Identities=17%  Similarity=0.229  Sum_probs=85.1

Q ss_pred             CCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccce
Q psy12061        374 PGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW  453 (626)
Q Consensus       374 ~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~  453 (626)
                      .+..+....++|.+++|. +|.++++...+.+++.|+|++|...     |.|.+|.|+|+..+...+. ...........
T Consensus         2 ss~~~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~-----g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~   74 (118)
T 2yrz_A            2 SSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPRCE-----RPLQGYSVEYQLLNGGELH-RLNIPNPAQTS   74 (118)
T ss_dssp             CCCCCSCCTTSSSCSCCC-CCCCCEECCCBTTEEEEECCCCCCS-----SCEEEEEEEEEBSSSCCEE-EEEESCTTCCE
T ss_pred             CCCCCCcceeecCCCCCC-CCCceEEEeCCCCEEEEEeCCCCCC-----CCccEEEEEEEECCCCceE-EEEcCCCCcCE
Confidence            334455556678888887 8889999999999999999998753     5799999999876654332 22233345677


Q ss_pred             EEEeCCccCceEEEEEEEeeCCCCCCCCc-cEEEeecCC
Q psy12061        454 ALIVGLQPDTKYYVKVMAYNNAGEGPESE-RYLERTYRK  491 (626)
Q Consensus       454 ~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~-~~~~~t~~~  491 (626)
                      +.+.+|+|++.|.|+|+|.|..|.|++|. .+.+.|.+.
T Consensus        75 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t~~~  113 (118)
T 2yrz_A           75 VVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVS  113 (118)
T ss_dssp             EEEESCCTTCEEEEEEEEEESSCEEEEEEEEEECCCSCC
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCcCCCCcCCceEeCCCCC
Confidence            99999999999999999999999999887 445555443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.48  E-value=8.6e-14  Score=108.34  Aligned_cols=102  Identities=16%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             EEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCC
Q psy12061         74 RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD  153 (626)
Q Consensus        74 ~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  153 (626)
                      .|.+..+|.+.. .+.+..+..|++++|.|.+.+.|.|.  +.|+|++..+....     .......++.|.|.+++.+|
T Consensus         4 ~v~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~--i~W~~~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D   75 (108)
T 3kvq_A            4 TVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQ--IMWFKDNETLVEDS-----GIVLKDGNRNLTIRRVRKED   75 (108)
T ss_dssp             -------CCCBS-CCCCEEEETTCCEEEECBCC----CC--EEEEESSSBCCCBT-----TEEEETTTTEEEECSCCGGG
T ss_pred             eECccCCCceec-CCCCeEEeCCCeEEEEEECcCcCCCe--EEEEECCeEcccCC-----CeEEeCCCcEEEEeecCccc
Confidence            455555666655 57889999999999999999988874  58999998886532     12223356799999999999


Q ss_pred             CEeEEEEEEeCCCceEEEEEEEEeCCCCCC
Q psy12061        154 AGEYECVVKSTVGKISTKTTVIVEGPPGLP  183 (626)
Q Consensus       154 ~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p  183 (626)
                      +|.|+|.|.|..|..+..+.|.|..+|..|
T Consensus        76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           76 EGLYTCQACSVLGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             CEEEEEEEC----CEEEEEEEEEEC-----
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEeCCCccc
Confidence            999999999999999999999999888655

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.5e-13  Score=107.39  Aligned_cols=95  Identities=18%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             eCCceeee--CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecC--CeEEEeecCCCCC
Q psy12061         79 HGPSYYEQ--LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG--GLLEITNASFADA  154 (626)
Q Consensus        79 ~~p~~~~~--~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~  154 (626)
                      .+|.+...  ++..+.+.+|++++|.|.+.+.|.|.  +.|+|+|..+....      ..+....  ..|.|.+++.+|+
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~--i~W~k~g~~l~~~~------~~~~~~~~~~~L~i~~~~~~D~   91 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQ--VVWTKGGAPLDTSR------VHVRTSDFDTVFFVRQAARSDS   91 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCE--EEEEETTEECCCSS------CEEEECSSEEEEEESSCCTTTC
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCE--EEEEECCEECCCCc------EEEEECCCeEEEEECCCChhcC
Confidence            35555322  45788999999999999999999874  58999999986322      2233333  4599999999999


Q ss_pred             EeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        155 GEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       155 g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      |.|+|.|.|..|..+..+.|.|..+|+
T Consensus        92 G~Y~C~a~N~~G~~~~~~~l~V~~~P~  118 (118)
T 2e7c_A           92 GEYELSVQIENMKDTATIRIRVVEKAG  118 (118)
T ss_dssp             EEEEEEEECSSCEECCEEEEEEECCCC
T ss_pred             EEEEEEEEeCCCeEEEEEEEEEEcCCC
Confidence            999999999999999999999998774

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.7e-14  Score=110.92  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-cCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||..|..+.++.+. .++   +|.|.+++.+|+|.|+|.+    |.....+.|.|
T Consensus        25 v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~V  100 (115)
T 2cr6_A           25 VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRV  100 (115)
T ss_dssp             EETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEEE
T ss_pred             EeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEEE
Confidence            568999999999999999999999999999888777765 223   6999999999999999994    67788899999


Q ss_pred             EeCCceeeeC
Q psy12061         78 LHGPSYYEQL   87 (626)
Q Consensus        78 ~~~p~~~~~~   87 (626)
                      ..+|.++..+
T Consensus       101 ~~~p~~~~~~  110 (115)
T 2cr6_A          101 TEKPSVFSRS  110 (115)
T ss_dssp             ECCSSCCSSS
T ss_pred             ECCCceeccC
Confidence            9888776543

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.47  E-value=4e-13  Score=103.41  Aligned_cols=96  Identities=16%  Similarity=0.287  Sum_probs=73.8

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEE--eecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTW--RYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W--~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  564 (626)
                      .|.+.+|. +|.+|++...+.+++.|+|  .  +|...+|. .+|.|+|+.. ..    .......  ...+.|.+|+|+
T Consensus         4 ~T~~~~P~-~p~~l~~~~~~~~sv~l~W~~~--~P~~~ng~-~~Y~v~y~~~-~~----~~~~~~~--~~~~~i~~L~p~   72 (107)
T 1x5a_A            4 GSSGAESL-SGLSLKLVKKEPRQLELTWAGS--RPRNPGGN-LSYELHVLNQ-DE----EWHQMVL--EPRVLLTKLQPD   72 (107)
T ss_dssp             TTTTCCCC-CSCCCCEEEEETTEEEEECCCC--CSSCCSSC-CEEEEEEECS-SC----EEEEEES--SSEEEEESCCSS
T ss_pred             cCCCCCCC-CCCceEEEecCCCEEEEEECCC--CCCCCCCc-eEEEEEEEeC-CC----CceEEEe--cceEEECCCCCC
Confidence            46666776 6679999999999999999  7  67778888 9999998765 11    1111111  123999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      +.|.|+|+|+|.+|.|++|.++ .+++.+.
T Consensus        73 t~Y~f~V~A~~~~G~g~~S~~~-~~~T~~~  101 (107)
T 1x5a_A           73 TTYIVRVRTLTPLGPGPFSPDH-EFRTSPP  101 (107)
T ss_dssp             CEEEEEEEEECSSSCCCCCCCE-EEECCCC
T ss_pred             CEEEEEEEEECCCccCCCCCCE-EEEECCC
Confidence            9999999999999999999764 4666653

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=7.7e-14  Score=110.41  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-------cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      .+...|.|.+.|.|.|.|.|+|||..+..+.+..+.       .+++|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        20 ~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           20 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            356789999999999999999999999877665553       3457999999999999999999999999999999988


Q ss_pred             EeCCce
Q psy12061         78 LHGPSY   83 (626)
Q Consensus        78 ~~~p~~   83 (626)
                      ...|..
T Consensus       100 ~~~P~~  105 (118)
T 1wwc_A          100 LKEPFP  105 (118)
T ss_dssp             SCCCCC
T ss_pred             ccCCCc
Confidence            776644

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9e-14  Score=107.25  Aligned_cols=76  Identities=20%  Similarity=0.327  Sum_probs=66.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.| |.|+|+|..+..+.++.+..++   .|.|.+++.+|+|.|+|.|.|.    ...+.|.|.
T Consensus        22 v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~~~l~V~   96 (104)
T 2e6p_A           22 FTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV----SAFFGVTVQ   96 (104)
T ss_dssp             EESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC----CCCEEEEEE
T ss_pred             EeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc----eEEEEEEEc
Confidence            4689999999999999999 9999999999887788777655   5999999999999999999987    347888887


Q ss_pred             eCCc
Q psy12061         79 HGPS   82 (626)
Q Consensus        79 ~~p~   82 (626)
                      .+|.
T Consensus        97 ~~P~  100 (104)
T 2e6p_A           97 DPSG  100 (104)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7663

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.9e-13  Score=102.39  Aligned_cols=102  Identities=22%  Similarity=0.307  Sum_probs=82.2

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      ...|. +|.++++...+.+++.|+|+++.      ++.+.+|.|+|+..........  ........+.+.+|+|++.|.
T Consensus         5 ~~~P~-~P~~~~~~~~~~~sv~l~W~~~~------~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~   75 (106)
T 2dju_A            5 SSGPK-PPIDLVVTETTATSVTLTWDSGN------SEPVTYYGIQYRAAGTEGPFQE--VDGVATTRYSIGGLSPFSEYA   75 (106)
T ss_dssp             CCSCC-CCEEEEEEEEETTEEEEEEECCC------SSCCSEEEEEEEETTCCSCCCC--BCCCCSSEEEEESCCTTCEEE
T ss_pred             CcCCc-CCCCcEEEeccCCEEEEEEcCCC------CCCceEEEEEEEECCCCCCeEE--ccCCCccEEEEeCCCCCcEEE
Confidence            44564 89999999999999999999873      2568999999977665422211  223345679999999999999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecCCCCCCCC
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYRKAPQKPP  497 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~~~p~~~p  497 (626)
                      |+|+|.|..|.|++|..+.++|.+..|..||
T Consensus        76 ~~V~A~n~~G~~~~S~~~~~~T~~~~P~~Pp  106 (106)
T 2dju_A           76 FRVLAVNSIGRGPPSEAVRARTGEQSGPSSG  106 (106)
T ss_dssp             EEEEEECSSCBCCCCCCEEEECCCSSCCCCC
T ss_pred             EEEEEEeCCccCCCcccEEeEcCCCCCCCCC
Confidence            9999999999999999999999998887665

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1e-13  Score=107.59  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       491 ~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      .+|+.|+.++.....+.+++.|+|+  ++.+.++.|.+|.|+|+..+...   + ........+.+.+.+|.|++.|.|+
T Consensus         8 ~~P~~P~~~~~~~~~~~~sv~l~W~--~p~~~~~~i~~Y~v~~~~~~~~~---~-~~~~~~~~~~~~v~~L~p~t~Y~fr   81 (110)
T 2db8_A            8 PVPATPILQLEECCTHNNSATLSWK--QPPLSTVPADGYILELDDGNGGQ---F-REVYVGKETMCTVDGLHFNSTYNAR   81 (110)
T ss_dssp             CCCCCCBCCCCCCSCSSSEEEECCB--CCTTCCSCCSEEEEEECCSSSSC---C-EEEEEESCSCEEEECCCSSSCCEEE
T ss_pred             CCCCCccccceeeccCCCEEEEEEC--CCCCCCCCccEEEEEEEeCCCCc---e-EEEEeCCcCEEEECCCCCCCEEEEE
Confidence            3455444444444457899999999  66666789999999987644321   2 2223346788999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEeecccc
Q psy12061        571 VLAFSNGGDGRMSSPAITFQMGEEK  595 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~~~~~~  595 (626)
                      |+|+|..|.|++|++ +.+++.+.+
T Consensus        82 V~A~n~~G~s~~S~~-~~~~T~~~p  105 (110)
T 2db8_A           82 VKAFNKTGVSPYSKT-LVLQTSEGS  105 (110)
T ss_dssp             EEEECSSCBCCCCSC-EECCCCCCC
T ss_pred             EEEEeCCcCCCCCCC-EEEEcCCCC
Confidence            999999999999965 456666543

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=5.5e-14  Score=108.23  Aligned_cols=76  Identities=25%  Similarity=0.410  Sum_probs=67.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.+ |.+.|.|+|+|..+..+.++.+..++   .|.|.+++.+|+|.|+|.|.|    ....+.|.|.
T Consensus        20 v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~   94 (103)
T 2edf_A           20 VAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVE   94 (103)
T ss_dssp             ECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----CEEEEEEEEC
T ss_pred             EcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----CCcEEEEEEe
Confidence            578999999999998 88899999999999888888888777   499999999999999999998    3677888887


Q ss_pred             eCCc
Q psy12061         79 HGPS   82 (626)
Q Consensus        79 ~~p~   82 (626)
                      .+|.
T Consensus        95 ~~p~   98 (103)
T 2edf_A           95 EKAS   98 (103)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            7664

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.47  E-value=1.2e-13  Score=105.59  Aligned_cols=75  Identities=28%  Similarity=0.449  Sum_probs=66.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+. .|.|.|.|+|||..|..+.++.+..++   +|.|.+++.+|+|.|+|.|    |.....+.|.|.
T Consensus        20 v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V~   94 (100)
T 2yuv_A           20 VDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVR   94 (100)
T ss_dssp             ECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEEC
T ss_pred             EcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEEe
Confidence            45899999999998 799999999999999888888887666   4999999999999999999    677788899997


Q ss_pred             eCC
Q psy12061         79 HGP   81 (626)
Q Consensus        79 ~~p   81 (626)
                      .+|
T Consensus        95 ~~P   97 (100)
T 2yuv_A           95 SGP   97 (100)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            765

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=107.31  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=69.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+. .|.+.+.|+|||..+..+.++.+..++   +|.|.+++.+|+|.|+|.|.|    ....+.|.|.
T Consensus        25 ~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~   99 (113)
T 2cpc_A           25 AVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVT   99 (113)
T ss_dssp             EETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEE
T ss_pred             EEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEe
Confidence            35799999999995 788999999999999888888887665   699999999999999999988    4678899998


Q ss_pred             eCCceeee
Q psy12061         79 HGPSYYEQ   86 (626)
Q Consensus        79 ~~p~~~~~   86 (626)
                      .+|..+..
T Consensus       100 ~~p~~~~~  107 (113)
T 2cpc_A          100 EPPVRIIY  107 (113)
T ss_dssp             CCCCCCCC
T ss_pred             cCCchhcc
Confidence            88866543

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.47  E-value=6.5e-13  Score=118.33  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CE---Ecc---------CCCcEEEccC---C--cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GN---IIG---------SGGRRKIFEN---G--NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~---~i~---------~~~~~~~~~~---g--~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++++|.|.+.|.+  .+.+.|+|.  |.   .|.         ..+|+.+..+   +  +|.|.+++.+|+|.|.|
T Consensus        13 v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C   92 (229)
T 1hxm_A           13 VSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYC   92 (229)
T ss_dssp             EETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEE
T ss_pred             EcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEE
Confidence            56899999999998754  468999984  22   221         1467777632   2  69999999999999999


Q ss_pred             EEEcCCC------C--ceeeEEEEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc
Q psy12061         61 TATNVHG------M--DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL  132 (626)
Q Consensus        61 ~a~n~~g------~--~~~~~~l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~  132 (626)
                      .+.+..+      .  ....+.|.|....... .+| .+.+.. ..++|.|.+.+-.++.+.+.|+++ ..+....    
T Consensus        93 ~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~-~~P-~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~~----  164 (229)
T 1hxm_A           93 ACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPH-TKP-SVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITEFD----  164 (229)
T ss_dssp             EEECCCCSSSCCCCCEEBCCEEEEEECCSCCC-BCC-EEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEECC----
T ss_pred             EEecCCCcccccchhhcCccEEEEEeccCCCC-cCC-cEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEecCc----
Confidence            9998632      1  1234678886422111 122 222222 235999999986555578899999 7665321    


Q ss_pred             CCCeeE-ecCCeEEEeecCC-CCCEeEEEEEEeCCC
Q psy12061        133 ETPNIN-IDGGLLEITNASF-ADAGEYECVVKSTVG  166 (626)
Q Consensus       133 ~~~~~~-~~~~~l~i~~~~~-~d~g~Y~C~a~n~~g  166 (626)
                        .... ..++.+.+..... .|.|.|+|.+.+..+
T Consensus       165 --~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          165 --PAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             --CEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             --cceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence              1111 2445666655443 678999999999864

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.47  E-value=2.4e-13  Score=105.42  Aligned_cols=97  Identities=19%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCce
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      +|.+++|.. |. +.+...+.+++.|+|+  +|.+.++.|.+|.|+|+..+...   ..........+++.|.+|.|++.
T Consensus         2 ~T~~~~P~~-p~-~~v~~~~~~sv~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~   74 (107)
T 2dn7_A            2 SSGSSGPGR-PT-MMISTTAMNTALLQWH--PPKELPGELLGYRLQYCRADEAR---PNTIDFGKDDQHFTVTGLHKGTT   74 (107)
T ss_dssp             TTCCCCCCC-CE-EEEEECSTTEEEEEEE--CCSSCSSCCCEEEEEEEETTCSS---CEEEEEETTCCEEEEECCCTTCE
T ss_pred             CCCCCCCCC-Cc-EeEEecCCCEEEEEEC--CCCCCCCceeEEEEEEEECCCCC---CEEEEeCCCccEEEeCCCCCCCE
Confidence            356677764 44 6666679999999999  56678899999999988655431   23345567788999999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        567 YHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       567 Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |.|+|+|+|..|.|++|.  ..+.+.
T Consensus        75 Y~~~V~A~n~~G~g~~s~--~~~~T~   98 (107)
T 2dn7_A           75 YIFRLAAKNRAGLGEEFE--KEIRTP   98 (107)
T ss_dssp             EEEEEEEEETTEEEEEEE--EEEECC
T ss_pred             EEEEEEEEcCCcccCCee--eEEeCC
Confidence            999999999999999886  335544

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=107.38  Aligned_cols=77  Identities=26%  Similarity=0.450  Sum_probs=68.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.+.  |.|.|+||+..|..+.|+.+..++   +|.|.+++.+|+|.|+|.|    |.....+.|.|.
T Consensus        31 v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           31 ATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             ECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEEC
T ss_pred             EeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEe
Confidence            5789999999999875  789999999999888899998887   7999999999999999999    677888999997


Q ss_pred             eCCcee
Q psy12061         79 HGPSYY   84 (626)
Q Consensus        79 ~~p~~~   84 (626)
                      .+|..+
T Consensus       105 ~~p~~~  110 (113)
T 2edh_A          105 AMPSGP  110 (113)
T ss_dssp             CCCCSS
T ss_pred             CCCCCc
Confidence            776543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.46  E-value=1.5e-12  Score=115.78  Aligned_cols=174  Identities=11%  Similarity=0.138  Sum_probs=112.1

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-----cCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      +..++.++.+.+|++++|.|.+.+.|.+  .+.|++++..+...     .+......++......|.|.+++.+|+|.|+
T Consensus         4 v~~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~   81 (212)
T 1f97_A            4 VYTAQSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (212)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSE--EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             EEecCCCeEEEcCCCEEEEeEeCCCCCc--EEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence            4456788999999999999999988765  56999987663210     0011123566667799999999999999999


Q ss_pred             EEEEeCCC--ceEEEEEEEEeCCCCCCCceE-EEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeee
Q psy12061        159 CVVKSTVG--KISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK  235 (626)
Q Consensus       159 C~a~n~~g--~~~~~~~l~v~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~  235 (626)
                      |.+.|..|  ..+..+.|.|..+|..+.... ........+.|.|........+    .+.|...+..       .+...
T Consensus        82 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~----~i~W~~~~~~-------~l~~~  150 (212)
T 1f97_A           82 CMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPS----EYSWFKDGIS-------MLTAD  150 (212)
T ss_dssp             EEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCC----EEEEEETTEE-------SBC--
T ss_pred             EEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCC----EEEEEeCCcc-------ccccc
Confidence            99999977  557788899988887653211 1223456677888732121111    2232222210       11100


Q ss_pred             e----------eeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        236 E----------VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       236 ~----------~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      .          .........+.+.+ +...+.+.|+|.|.|..|..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          151 AKKTRAFMNSSFTIDPKSGDLIFDP-VTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             ---CBSCSSSCEEECTTTCCEEESS-CCGGGCEEEEEEEECSSSCC
T ss_pred             ccccccccCceeEecCCCceEEEEe-cChhhCcEEEEEEccccCCc
Confidence            0          00001233456655 99999999999999999865

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=1.6e-13  Score=109.32  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=83.0

Q ss_pred             CccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEec---CCCccceEEEE-ecCccce
Q psy12061        378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE---DNPEETAVYYL-SRTTRNW  453 (626)
Q Consensus       378 s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~---~~~~~~~~~~~-~~~~~~~  453 (626)
                      +..+...+..+.|. +|.++++...+.+++.|+|.++.+.+    +.|.+|.|+|+..   ....+...... .......
T Consensus         6 s~~~~~~~~~~~P~-~P~~l~~~~~~~~sv~l~W~p~~~~~----~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~   80 (124)
T 1wis_A            6 SGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGYDGK----TSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARS   80 (124)
T ss_dssp             SCCCCSCCCCCCCC-CCEEEEEESCCSSCEEEEEECCCCCS----SCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSE
T ss_pred             cccccccCCCCCCc-cCCCCEEEEecCCEEEEEEECCCCCC----CcccEEEEEEEECCCCCCCCCeEeeeEccCCCceE
Confidence            33344445556665 89999999999999999998876433    6699999999763   22333222211 2355677


Q ss_pred             EEEeCCccCceEEEEEEEeeCCCCCCCCccE-EEeecCCCCC
Q psy12061        454 ALIVGLQPDTKYYVKVMAYNNAGEGPESERY-LERTYRKAPQ  494 (626)
Q Consensus       454 ~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~-~~~t~~~~p~  494 (626)
                      +++.+|+|++.|.|+|+|.|..|.|++|... .++|.+..|.
T Consensus        81 ~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T~~~~P~  122 (124)
T 1wis_A           81 MEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPS  122 (124)
T ss_dssp             EEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEECCCSSCC
T ss_pred             EEeCCCCCCCEEEEEEEEEECCccCCCcCCccceEcCCCCCC
Confidence            9999999999999999999999999998754 6788876664

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.46  E-value=1.2e-13  Score=107.33  Aligned_cols=83  Identities=28%  Similarity=0.494  Sum_probs=70.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCc---EEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~---L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.+.  |.|.|+|++..+..+.++.+..++.   |.|.+++.+|+|.|+|.|.|    ....+.|.|.
T Consensus        20 v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~   93 (108)
T 2dm7_A           20 ASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVR   93 (108)
T ss_dssp             EETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT----EEEEEECEEE
T ss_pred             EeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC----CEEEEEEEEe
Confidence            5689999999999876  6899999999998888988887776   99999999999999999944    5777899998


Q ss_pred             eCCceeeeCCCc
Q psy12061         79 HGPSYYEQLPPK   90 (626)
Q Consensus        79 ~~p~~~~~~~~~   90 (626)
                      .+|..+..++++
T Consensus        94 ~~p~~~~~~~~~  105 (108)
T 2dm7_A           94 ALPARFTEGSGP  105 (108)
T ss_dssp             CCCSSCCCCCCC
T ss_pred             cCCHHHccCccc
Confidence            877665554443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.46  E-value=1.6e-13  Score=120.57  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=97.8

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      .|....+.+|++++|.|.+.+.|.+. .+.|+|||..+...             .+.|.|.+++.+|+|.|+|.+.|.  
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~~~p~~~-~v~W~k~g~~l~~~-------------~~~L~i~~v~~~D~G~Y~C~a~n~--   76 (204)
T 3sgj_C           13 EPQWYRVLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQ-------------ASSYFIDAATVDDSGEYRCQTQLS--   76 (204)
T ss_dssp             ESCCSEEETTCCEEEEEECCSSSSCC-CEEEEETTEEESCC-------------SSEEEESSCCGGGCEEEEEEETTS--
T ss_pred             cCCCeEEECCCCEEEEEcCCCCCCCc-EEEEEECCEEcccC-------------ccEEEEecccccCCEEEEEEeCCC--
Confidence            35567899999999999999988653 47999999988642             278999999999999999999874  


Q ss_pred             ceEEEEEEEEeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeE
Q psy12061        167 KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEA  246 (626)
Q Consensus       167 ~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  246 (626)
                      ..+..+.|.|..+|...............+.|.|.....  .+..  .+.        |.+.+..+...     .....+
T Consensus        77 ~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~--~p~~--~v~--------W~k~g~~~~~~-----~~~~~L  139 (204)
T 3sgj_C           77 TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKN--TALH--KVT--------YLQNGKGRKYF-----HHNSDF  139 (204)
T ss_dssp             BCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGG--CCCE--EEE--------EEETTEEEEEE-----EECCCE
T ss_pred             cccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCC--CCCc--eEE--------EEECCcEeecc-----cCCceE
Confidence            445567777776552100000122345667777774211  1111  222        33322222111     112245


Q ss_pred             EEEeeccCCceEEEEEEEecCCc
Q psy12061        247 SIENVLVPWSTYEFKVIAGNELG  269 (626)
Q Consensus       247 ~i~~~l~~~~~y~~~v~a~n~~g  269 (626)
                      .+.+ +...+.+.|+|.|.|..+
T Consensus       140 ~i~~-v~~~D~G~Y~C~a~n~~~  161 (204)
T 3sgj_C          140 YIPK-ATLKDSGSYFCRGLVGSK  161 (204)
T ss_dssp             EESS-CCGGGCEEEEEEEEETTE
T ss_pred             EECc-CCcccCEEEEEEEEeCCC
Confidence            5655 899999999999999544

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.46  E-value=1.4e-13  Score=106.01  Aligned_cols=77  Identities=29%  Similarity=0.519  Sum_probs=68.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCc---EEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~---L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.| |.|+|++..+..+.++.+..++.   |.|.+++.+|+|.|+|.    .|.....+.|.|.
T Consensus        20 v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~   94 (103)
T 2e7b_A           20 VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLTVT   94 (103)
T ss_dssp             EESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCEEEE
T ss_pred             EECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEEEEEE
Confidence            5689999999999999999 99999999998888999888885   99999999999999998    5677788899998


Q ss_pred             eCCce
Q psy12061         79 HGPSY   83 (626)
Q Consensus        79 ~~p~~   83 (626)
                      .+|..
T Consensus        95 ~~p~~   99 (103)
T 2e7b_A           95 ALPSG   99 (103)
T ss_dssp             CCCCC
T ss_pred             ecccc
Confidence            77754

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.45  E-value=2.5e-13  Score=102.55  Aligned_cols=86  Identities=27%  Similarity=0.377  Sum_probs=73.1

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |+.+...|....+.+|++++|.|.+.+.| |  .+.|+|+|..+...       .++...++.|.|.+++.+|+|.|+|.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p--~i~W~k~g~~~~~~-------~~~~~~~~~L~i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQLVES-------NRTRITGEEVEVRDSIPADSGLYACV   78 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-C--EEEEEBTTBCCCCC-------SSEEECSSEEEESSCCGGGSEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-C--ceEEEECCEecCCC-------CCEEEeCCEEEECCCChHHCEEEEEE
Confidence            33444557889999999999999999987 5  56999999988653       45666788999999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy12061        161 VKSTVGKISTKTTVIV  176 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v  176 (626)
                      |.|..|..+..+.|.|
T Consensus        79 a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           79 TSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             eccCCCcEEEEEEEEE
Confidence            9999999888888876

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.45  E-value=2.6e-13  Score=101.56  Aligned_cols=70  Identities=19%  Similarity=0.379  Sum_probs=60.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.+.|+|+|..+....      .++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus        15 v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           15 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             ECTTSCEEEECEEECSSCCEEEEEETTEECTTCC------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             ecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC------CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEE
Confidence            5689999999999999999999999999986543      35799999999999999999999999754 3466666

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.45  E-value=3.3e-13  Score=105.52  Aligned_cols=103  Identities=22%  Similarity=0.303  Sum_probs=82.7

Q ss_pred             EEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccC
Q psy12061        383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD  462 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  462 (626)
                      ++|.++.|. +|.++++...+.+++.|+|++|...    ++.|.+|.|+|+..+.......  ........+.+.+|+|+
T Consensus         4 ~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~   76 (111)
T 1x5l_A            4 GSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPEQP----NGIILEYEIKYYEKDKEMQSYS--TLKAVTTRATVSGLKPG   76 (111)
T ss_dssp             CCCSCCCCC-CCCCEECSCBCSSCEEEEECCCSCC----CSCCCEEEEEEEESSSCCSSCE--EEEESSSEEEECSCCTT
T ss_pred             EEcCCCCCC-CCceEEEEEcCCCEEEEEECCCCCC----CCEEEEEEEEEEECCCCceeEE--EecCCCCEEEEcCCCCC
Confidence            456677777 7889999889999999999998643    3679999999987764332222  22344567999999999


Q ss_pred             ceEEEEEEEeeCCCCCCCCccEEEeecCCC
Q psy12061        463 TKYYVKVMAYNNAGEGPESERYLERTYRKA  492 (626)
Q Consensus       463 t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~  492 (626)
                      +.|.|+|+|.|..|.|++|..+.++|....
T Consensus        77 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~  106 (111)
T 1x5l_A           77 TRYVFQVRARTSAGCGRFSQAMEVETGKPS  106 (111)
T ss_dssp             CEEEECEEEEETTEECCCCCCEEEECCCTT
T ss_pred             CEEEEEEEEEeCCcCCCCcccEEEEcCCCC
Confidence            999999999999999999999999988653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.45  E-value=1.5e-13  Score=103.44  Aligned_cols=90  Identities=22%  Similarity=0.197  Sum_probs=71.6

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCC--EEeccccCCccCCCeeEecCCeEEEeecCCCCCEeE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VRIGNMDLNELETPNINIDGGLLEITNASFADAGEY  157 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y  157 (626)
                      +|.+ ..++....+..|++++|.|.+.|.|.|.  +.|+|++  ..+.....     .......+.|.|.+++.+|+|.|
T Consensus         2 ~P~i-~~~~~~~~v~~G~~~~l~C~~~g~P~p~--i~W~k~~~~~~~~~~~~-----~~~~~~~~~L~i~~~~~~D~G~Y   73 (93)
T 1wit_A            2 KPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPT--ATWTVGDSGAALAPELL-----VDAKSSTTSIFFPSAKRADSGNY   73 (93)
T ss_dssp             CCEE-CCCCCEEEECTTBCCEEEEEEECCSSCE--EEEECSTTTCBCSTTSE-----EEEETTEEEEECTTBCGGGCEEE
T ss_pred             CCeE-EcCCCceEEeCCCEEEEEEEEEEcCCCE--EEEEECCCCcccCCcEE-----EEecCCEEEEEECCCChhcCEEE
Confidence            3555 3457789999999999999999999885  5899999  77754310     11122346799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEe
Q psy12061        158 ECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +|.|.|..|..+..+.|.|+
T Consensus        74 ~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           74 KLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEEEEC
Confidence            99999999999988888774

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.45  E-value=2.1e-13  Score=106.11  Aligned_cols=100  Identities=15%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             ecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCC----C-ceeeEEEEEEEeccCCccccceeeecCccceEEecCCC
Q psy12061        488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE----E-PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLS  562 (626)
Q Consensus       488 t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~----~-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  562 (626)
                      .....|+.+|..+.+..+..+++.|+|+  +|.+.+    . .|.+|.|+ ......  . ..........+.+++.+|+
T Consensus        10 ~~~~~pp~~P~~p~v~~vt~~Sv~LsW~--~p~~~g~~~g~~~I~~Y~ve-~~~~~~--~-~~~~v~~~~~t~~~v~gL~   83 (120)
T 1wfu_A           10 PHKVVPLSKPHPPVVGKVTHHSIELYWD--LEQKEKRQGPQEQWLRFSIE-EEDPKM--H-SYGVIYTGYATRHVVEGLE   83 (120)
T ss_dssp             CTTCCCCCCCCCCBCCCEETTEEEEECT--TTSCSCCCSCGGGCCEEEEE-EECTTT--C-CEEEEEEESCSEEEEESCC
T ss_pred             EEeeCCCCCCCCceeceEECCEEEEEEC--CCccCCccCCCCceEEEEEE-EecCCC--C-ceEEEecCCccEEEECCCC
Confidence            3444556667777777788999999999  454432    3 39999998 332111  1 2233344456789999999


Q ss_pred             CCceEEEEEEEEecCCCCCCCCCcEEEeeccc
Q psy12061        563 PGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       563 p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      |++.|.|||+|.|..|.|++|.. +.++|...
T Consensus        84 p~t~Y~frV~A~n~~G~s~~S~~-~~~~T~~~  114 (120)
T 1wfu_A           84 PRTLYKFRLKVTSPSGEYEYSPV-VSVATTRE  114 (120)
T ss_dssp             TTCEEEEEEEEECSSSCEEECCC-EEEECCCC
T ss_pred             CCCEEEEEEEEECCCCCCCCCcc-EeeEcCCC
Confidence            99999999999999999999955 55666654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.45  E-value=2.5e-12  Score=113.03  Aligned_cols=162  Identities=14%  Similarity=0.156  Sum_probs=98.0

Q ss_pred             CCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecC--C--eEEEeecCCCCCEeEEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDG--G--LLEITNASFADAGEYECVVK  162 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~--~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      +.+..+.+|+.+.|.|.+.. .|.|  +|.|+|||.++....     ..++....  +  .|.|.+++.+|+|.|+|.|.
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~~~P~p--~i~W~kng~~l~~~~-----~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEIFEGP-----KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSCCCSCC--EEEEEETTEEECSSS-----SCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCceEEEeCCeEEEEEEEecCCCCC--EEEEEECCEECccCC-----CEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            34788999999999999975 5665  569999999997542     12333322  2  69999999999999999999


Q ss_pred             eCCCceEEEEEEEEe---------------------CCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecC
Q psy12061        163 STVGKISTKTTVIVE---------------------GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW  221 (626)
Q Consensus       163 n~~g~~~~~~~l~v~---------------------~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~  221 (626)
                      |  |.......+.+.                     .+|.....+.........+.|.|......  |..          
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~--P~p----------  147 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK--KET----------  147 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCC--TTC----------
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCC--CCC----------
Confidence            9  665555554321                     12221112222233445566666532110  111          


Q ss_pred             CCCceEeecceeeeeeec-cCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        222 NSTWFNVSEHVIGKEVDR-YTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       222 ~~~w~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      ...|.+.+..+....... ..+...+.|.+ +.+.+.+.|+|.|.|..|..
T Consensus       148 ~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~  197 (207)
T 3rbs_A          148 HIVWYKDEREISVDEKHDFKDGICTLLITE-FSKKDAGIYEVILKDDRGKD  197 (207)
T ss_dssp             EEEEEETTEEECCCCCCCCSSEEEEEEETT-CCGGGCEEEEEEEEETTEEE
T ss_pred             EEEEEECCEECCCCCceEcCCCEEEEEECC-CCcccCEEEEEEEEcCCCEE
Confidence            123443332221111000 11222455655 99999999999999999865

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.45  E-value=7.8e-13  Score=101.18  Aligned_cols=93  Identities=23%  Similarity=0.344  Sum_probs=74.7

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCC--eEEEeecCCCCCEe
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGG--LLEITNASFADAGE  156 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~--~l~i~~~~~~d~g~  156 (626)
                      +|.+. ..|....+.+|++++|.|.+.+.|.|  .+.|+|+|..+.....     .+.. ..++  .|.|.+++..|+|.
T Consensus         5 ~P~~~-~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~   76 (100)
T 2kdg_A            5 PPRFI-QVPENMSIDEGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDL-----HKMIVSEKGLHSLIFEVVRASDAGA   76 (100)
T ss_dssp             EEECC-CCCCCEEEETTCCEEEEEECEEESCC--EEEEEETTEEECCCSS-----SCEEEETTTEEEEEESSCCGGGCEE
T ss_pred             CCeEE-eCCCCEEecCCCEEEEEEEEEeeCCC--EEEEEECCEECcCCCc-----EEEEEcCCCeEEEEECCCCcccCEE
Confidence            44444 35788999999999999999999887  5689999999876421     1222 2333  89999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      |+|.|.|..|..+..+.|.|...+
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~e  100 (100)
T 2kdg_A           77 YACVAKNRAGEATFTVQLDVLAKE  100 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEEEcCCCeEEEEEEEEEEecC
Confidence            999999999999999999987643

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.44  E-value=7.3e-13  Score=115.91  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=105.1

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCeeEec---------CCeEEEeecC
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINID---------GGLLEITNAS  150 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~i~~~~  150 (626)
                      |.+. ..|.+..+.+|++++|.|.+. +.|.+  .+.|+|+|..+.....   ...++...         .+.|.|.+++
T Consensus         3 ~~~~-~~p~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~g~~l~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~   76 (195)
T 2c5d_C            3 SPFV-GNPGNITGARGLTGTLRCQLQVQGEPP--EVHWLRDGQILELADS---TQTQVPLGEDEQDDWIVVSQLRITSLQ   76 (195)
T ss_dssp             CSEE-ECCCCEEECTTCCEEEEEEEEEESSCC--CCEEEETTEECCSCEE---EEEEEECSSSTTSEEEEEEEEEESSCC
T ss_pred             Ceec-cChhheEEecCCcEEEecccccCCCCc--EEEEEECCEEcccCCC---CceEEEEccccccceeeccEEEEEecc
Confidence            4444 468899999999999999999 88776  4589999999875420   00122221         3689999999


Q ss_pred             CCCCEeEEEEEEeCCCceEE-EEEEEEeCCCCC---CCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCce
Q psy12061        151 FADAGEYECVVKSTVGKIST-KTTVIVEGPPGL---PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF  226 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~~~-~~~l~v~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~  226 (626)
                      ..|+|.|+|.+.|..|.... .+.|.|..+|..   |....  ......+.|.|..... ..+.   .+        .|.
T Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~--~~~g~~~~l~C~~~g~-p~p~---~v--------~W~  142 (195)
T 2c5d_C           77 LSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRT--VAANTPFNLSCQAQGP-PEPV---DL--------LWL  142 (195)
T ss_dssp             STTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEE--ECTTCCEEEEEEEECS-SCCC---EE--------EEE
T ss_pred             ccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEE--EcCCCEEEEEeECCCC-CCCC---EE--------EEE
Confidence            99999999999998886544 488888887632   22221  2234556777764211 1110   12        233


Q ss_pred             EeecceeeeeeeccCCceeEEEEeeccCCceEEEEEEEecCCccC
Q psy12061        227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG  271 (626)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~y~~~v~a~n~~g~~  271 (626)
                      +....+....  .......+.+.+ +.  +.+.|+|.|.|..|..
T Consensus       143 ~~~~~~~~~~--~~~~~~~L~i~~-~~--d~G~Y~C~a~N~~g~~  182 (195)
T 2c5d_C          143 QDAVPLATAP--GHGPQRSLHVPG-LN--KTSSFSCEAHNAKGVT  182 (195)
T ss_dssp             ESSCBSSSST--TSSCCEEEEECC-CS--SCEEEEEEEEETTEEE
T ss_pred             ECCEeccCCC--CcCCCCeEEEcc-cc--cCceEEEEEEcCCCce
Confidence            3222221110  001233455544 55  5789999999999855

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.44  E-value=5.7e-13  Score=101.71  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=72.8

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE---ecCCeEEEeecCCCCCEe
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN---IDGGLLEITNASFADAGE  156 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~  156 (626)
                      +|.+. ..+.+..+.+|++++|.|.+.+.|.|  .+.|+|+|..+.....     ....   .....|.|.+++.+|+|.
T Consensus         5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~   76 (99)
T 1g1c_A            5 APKIF-ERIQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDR-----IYWYWPEDNVCELVIRDVTGEDSAS   76 (99)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCCSS-----EEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCceE-ecCcceEEcCCCcEEEEEEEEEeCCC--EEEEEECCEECCCCCC-----EEEEEcCCCEEEEEECCCCcCCCEE
Confidence            34443 35788899999999999999999887  4589999999875421     1111   123379999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |+|.|.|..|..+..+.|.|..
T Consensus        77 Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           77 IMVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCcEEEEEEEEEec
Confidence            9999999999999999998865

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.44  E-value=2.1e-13  Score=104.39  Aligned_cols=72  Identities=24%  Similarity=0.380  Sum_probs=62.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+ +.|.|.|.|+|||..|..+ .++.+..+|   +|.|.+++.+|+|.|+|.|    +.....+.|.|
T Consensus        28 v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V  102 (104)
T 1pd6_A           28 VSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFV  102 (104)
T ss_dssp             EETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE----TTEEECCEEEE
T ss_pred             EecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE----CCCcEEEEEEE
Confidence            5689999999999 7899999999999999877 788887667   7999999999999999999    44566677776


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus       103 ~  103 (104)
T 1pd6_A          103 K  103 (104)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.44  E-value=6.4e-13  Score=103.42  Aligned_cols=101  Identities=18%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CCCCCCCCCceEE-EeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceE
Q psy12061        387 EDMPQVAPQGVFS-RGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKY  465 (626)
Q Consensus       387 ~~~p~~~p~~~~~-~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  465 (626)
                      ...|. +|.++.+ ...+.+++.|+|++|...+   ++.|.+|.|+|+......+....   ......+++.+|.+++.|
T Consensus         6 ~~~P~-~P~~~~~~~~~~~~sv~l~W~~P~~~~---~~~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~~v~~L~p~t~Y   78 (110)
T 2crz_A            6 SGPPG-PCLPPRLQGRPKAKEIQLRWGPPLVDG---GSPISCYSVEMSPIEKDEPREVY---QGSEVECTVSSLLPGKTY   78 (110)
T ss_dssp             CCCCC-CCCCCEECSCCCSSEEEEECCCCSCCT---TSCCCEEEEEEECTTSCCCEEEE---EESCSEEEEESCCTTCEE
T ss_pred             CCCCC-CCCCceeccccCCCEEEEEeCCCCCCC---CceeEEEEEEEEeCCCCceEEEE---eCCcEEEEECCcCCCCEE
Confidence            44454 8889888 5678889999998775432   36689999999876554443322   344567999999999999


Q ss_pred             EEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        466 YVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       466 ~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      .|+|+|.|..|.|++|....+.|....|.
T Consensus        79 ~frV~A~n~~G~g~~S~~~~~~T~~~~P~  107 (110)
T 2crz_A           79 SFRLRAANKMGFGPFSEKCDITTAPGSGP  107 (110)
T ss_dssp             EECCEEECSSCBCCCCCCEEEECCCSCCC
T ss_pred             EEEEEEEcCCccCCCCCccccccCCCCCC
Confidence            99999999999999999999999877664

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=9.6e-13  Score=102.48  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=72.6

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCC-CCCCceeeEEEEEEEeccCCccccceee-ecCccceEEecCCCCCceEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPS-FEEEPIIGYKVRVWEVDQDMSRANDTII-PVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      ++.+|.++++...+.+++.|+|+  +|. +++..|.+|.|+|+..+...   +.... .....+.+.+.+|.+++.|.|+
T Consensus         7 ~P~~P~~l~~~~~~~~sv~l~W~--~p~~~g~~~i~~Y~v~~~~~~~~~---w~~~~~~~~~~~~~~v~~L~p~t~Y~fr   81 (110)
T 2yuw_A            7 GTSPPTLLTVDSVTDTTVTMRWR--PPDHIGAAGLDGYVLEYCFEGTED---WIVANKDLIDKTKFTITGLPTDAKIFVR   81 (110)
T ss_dssp             CSCCCEEEEEEEECSSCEEEEEE--CCSSCCSSCEEEEEEEEEETTCSS---EEECCSSCCCSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCccEEEeccCCeEEEEEC--CCCCCCCCCccEEEEEEEECCCcc---ceEeccccCccCEEEECCCCCCCEEEEE
Confidence            34588899999999999999999  444 34568999999988754431   11111 1236788999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEeec
Q psy12061        571 VLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |+|+|..|.|++|.....+++.
T Consensus        82 V~A~n~~G~s~~S~~~~~v~~~  103 (110)
T 2yuw_A           82 VKAVNAAGASEPKYYSQPILVK  103 (110)
T ss_dssp             EEEEETTEECCCEECSSCEECC
T ss_pred             EEEEcCCcCCCCcCCCCCEEec
Confidence            9999999999998765445444

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.44  E-value=9.5e-13  Score=104.51  Aligned_cols=104  Identities=21%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             EEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecC-CCccceEEEEecCccceEEEeCCcc
Q psy12061        383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED-NPEETAVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p  461 (626)
                      ..+....|. +|.++++...+.+++.|+|+++.+.    ++.|.+|.|+|+... ...+.............+++.+|+|
T Consensus        11 ~~~~~~~P~-~P~~~~~~~~~~~sv~l~W~p~~~~----~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p   85 (121)
T 1x4z_A           11 DHGRLSPPE-APDRPTISTASETSVYVTWIPRGNG----GFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEK   85 (121)
T ss_dssp             CSSSCCCCC-CCCCCEEEECCSSEEEEECCCCCCT----TSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCT
T ss_pred             ccCcCCCCc-cCCCCEEEEccCCEEEEEEECCCCC----CCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCC
Confidence            344445555 8999999999999999999965433    256899999998776 3334333223245567799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEE-EeecCC
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYL-ERTYRK  491 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~-~~t~~~  491 (626)
                      ++.|.|+|+|.|..|.|++|.... +++...
T Consensus        86 ~t~Y~frV~A~n~~G~s~~S~~~~~v~~~~~  116 (121)
T 1x4z_A           86 GISYKFRVRALNMLGESEPSAPSRPYVVSGS  116 (121)
T ss_dssp             TCEEEEEEEEEETTEECCCCCCCCCEECCSS
T ss_pred             CCEEEEEEEEEcCCCcCCCcCCCCCEEcCCC
Confidence            999999999999999999887664 555543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=7.3e-14  Score=108.11  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.+.|.+ |.|+|||..+..+.++.+..++   +|.|.+++.+|+|.|+|.|.|.  .....+.|.|.
T Consensus        20 v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           20 VKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEEEE
T ss_pred             EeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEEEE
Confidence            5689999999999999887 9999999999888888887766   7999999999999999999998  44566777775

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.44  E-value=2.5e-13  Score=102.51  Aligned_cols=72  Identities=22%  Similarity=0.372  Sum_probs=63.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+ +.|.+.|.|+|||..|..+.++.+..++   +|.|.+++.+|+|.|+|.|    |.....+.|.|.
T Consensus        20 v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           20 VAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             EETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEEe
Confidence            5689999999999 7899999999999999888888887666   5999999999999999999    666777888774

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.5e-13  Score=103.69  Aligned_cols=90  Identities=22%  Similarity=0.392  Sum_probs=72.9

Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .+|.+. ..|.+..+.+|++++|.|.+.+.|.|.  +.|+|+|..+....      .........|.|.+++.+|+|.|+
T Consensus        10 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~~~g~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~   80 (99)
T 2yr3_A           10 VAPSFS-SVLKDCAVIEGQDFVLQCSVRGTPVPR--ITWLLNGQPIQYAR------STCEAGVAELHIQDALPEDHGTYT   80 (99)
T ss_dssp             EEEEEE-ECCCCEEECTTCCEEEECEEEEESCCC--CEEEESSSBCSSCC------CEEETTEEEEEECSCCTTCCBCEE
T ss_pred             cCCcee-ecCCCCEEeCCCeEEEEEEEeeeCCCe--EEEEECCEECcccc------eEeeCCeEEEEECCCChhhCEEEE
Confidence            345444 457788999999999999999999875  58999998886532      223334568999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEe
Q psy12061        159 CVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~  177 (626)
                      |.|.|..|..+..+.|.|+
T Consensus        81 C~a~N~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           81 CLAENALGQVSCSAWVTVH   99 (99)
T ss_dssp             EEEECSSCEEEEECCEEEC
T ss_pred             EEEEECCCeEEEEEEEEEC
Confidence            9999999998888888763

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.44  E-value=3.1e-13  Score=124.32  Aligned_cols=169  Identities=17%  Similarity=0.249  Sum_probs=106.4

Q ss_pred             CCCCceEEEEeeeCC--CCCCeeEEEeC--CEE---c---c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEA--APKPKFVWKKD--GNI---I---G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g--~p~p~i~W~~~--~~~---i---~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +.+|++|+|.|.+.+  .....+.|+|.  +..   +   .           ..+|+.+..++     +|.|.+++.+|+
T Consensus        35 ~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds  114 (267)
T 3u1s_H           35 KKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDT  114 (267)
T ss_dssp             ECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGC
T ss_pred             EeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhC
Confidence            578999999999975  24468999983  211   1   0           12577765443     399999999999


Q ss_pred             EEEEEEEEcC------CC-------------------CceeeEEEEEEe----CCceeeeCCCceEEecCCcEEEEEEec
Q psy12061         56 GIYSCTATNV------HG-------------------MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAH  106 (626)
Q Consensus        56 G~Y~C~a~n~------~g-------------------~~~~~~~l~v~~----~p~~~~~~~~~~~v~~g~~~~l~C~~~  106 (626)
                      |.|.|.+.+.      .+                   .....+.|.|..    +|.+...+|.. .+..|+.++|.|.+.
T Consensus       115 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~  193 (267)
T 3u1s_H          115 AIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK  193 (267)
T ss_dssp             EEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCG-GGEETTEEEEEEEEE
T ss_pred             EEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCc-ccCCCCcEEEEEEEe
Confidence            9999999721      11                   111235677752    34443323322 235799999999999


Q ss_pred             ccCCcceeEEEeeCCEEeccccC----CccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEE
Q psy12061        107 TEELLDVAYIWTHNGVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       107 ~~p~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      +..++.+++.|  ++..+.....    ....+..+. -.+.|.|......| +.|+|.+.+..+.......+.
T Consensus       194 ~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~-~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  262 (267)
T 3u1s_H          194 DYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  262 (267)
T ss_dssp             EEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEE-EEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEECCCeEEEE--CCcccCCCEEeCCceECCCCCEE-EEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcc
Confidence            85444578899  5544432100    000011111 12468888888888 999999999887655544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	626
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	6e-18
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	9e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	7e-10
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	5e-16
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	7e-16
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-12
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-15
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-09
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-06
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	0.002
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	1e-15
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	1e-08
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	1e-07
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-14
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	5e-12
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	2e-10
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	4e-10
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-14
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	3e-08
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-06
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	0.001
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	5e-14
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	2e-06
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	8e-06
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	2e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-08
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-13
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	5e-07
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-06
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	8e-13
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	1e-09
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-08
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	8e-06
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	2e-12
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	1e-11
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-11
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	3e-10
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	3e-12
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	2e-11
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	7e-09
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	4e-08
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	3e-12
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	1e-10
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	2e-10
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	5e-04
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	5e-12
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	3e-09
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	3e-08
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	5e-07
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	8e-12
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	3e-07
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	4e-07
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	6e-05
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	9e-12
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	1e-09
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-09
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	4e-05
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	1e-11
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	9e-06
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	3e-05
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	4e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-08
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-11
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	3e-09
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-06
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	3e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-07
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	3e-11
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	7e-05
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	1e-04
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	4e-04
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	4e-11
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	4e-09
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	3e-08
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	0.003
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-05
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	2e-10
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	6e-06
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	6e-05
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-10
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	4e-10
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-09
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	4e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-05
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	5e-10
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-07
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-07
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	0.001
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	5e-10
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-07
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	1e-04
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	1e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-04
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	9e-10
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	5e-06
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	3e-05
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	8e-05
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	1e-09
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	3e-06
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	4e-04
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-09
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	2e-06
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	8e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-06
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	3e-09
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	4e-05
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	0.001
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-06
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	5e-09
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	5e-09
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	5e-06
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-04
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	7e-09
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	7e-06
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-05
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	8e-09
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	2e-06
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	3e-06
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	8e-09
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-07
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-07
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-05
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	8e-09
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	3e-06
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	3e-06
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	0.002
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	1e-08
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	8e-05
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	2e-04
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	0.003
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	1e-08
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	2e-07
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	3e-05
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	1e-08
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	1e-05
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	4e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-06
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-08
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	4e-07
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-04
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	3e-08
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	8e-04
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	0.001
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-08
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	3e-08
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	1e-07
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	1e-06
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-08
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-07
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-05
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	4e-08
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	5e-08
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	0.002
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	0.002
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-04
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	1e-07
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	3e-06
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	9e-06
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	1e-07
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-07
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-07
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-06
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	1e-07
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	3e-06
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	2e-05
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	0.001
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	2e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-07
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	3e-07
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	1e-05
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	1e-05
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	3e-07
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	5e-06
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	4e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.003
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-07
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	4e-07
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	5e-07
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	2e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-07
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	4e-07
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	4e-06
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	2e-05
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	5e-07
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	2e-06
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	5e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	5e-07
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.001
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	5e-07
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	6e-06
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	1e-05
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	6e-07
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	0.001
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	6e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-05
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	7e-07
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	1e-05
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	3e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	8e-07
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	4e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	8e-05
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	9e-07
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	4e-06
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	8e-06
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	0.001
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	1e-06
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	1e-05
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	0.003
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	1e-06
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	9e-06
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	9e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-06
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-06
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-05
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	9e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-04
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-06
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-06
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	7e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-04
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	4e-06
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	3e-05
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	2e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	4e-06
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	5e-06
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	3e-05
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	6e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.003
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	7e-06
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	3e-05
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	5e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	9e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	8e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.002
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	1e-05
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	0.003
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	0.004
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-05
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-05
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	0.001
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	0.002
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-05
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	3e-05
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	9e-05
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	6e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-05
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	6e-05
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	6e-05
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	7e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	7e-05
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	8e-05
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	1e-04
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-04
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	1e-04
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	9e-04
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-04
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	0.004
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	2e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	2e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-04
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	9e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	4e-04
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	5e-04
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	6e-04
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	6e-04
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	0.001
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	7e-04
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	0.001
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	0.004
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d3d85d3	94	b.1.2.1 (D:212-305) The p40 domain of interleukin-	0.001
d1hnfa1	101	b.1.1.1 (A:4-104) CD2, first domain {Human (Homo s	0.002
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.002
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	0.002
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.002
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.002
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.002
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.003
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.003
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.004

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 6e-18
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 378 SEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN 437
           S   +  S ED+P VAP  V     NST   V W+P+    ++IRG L G+RI YWK  +
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVP--LKSIRGHLQGYRIYYWKTQS 59

Query: 438 PEETAVYYLSR------TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK 491
             +    ++ +       ++   ++ GL+P + Y + V   N  GEGP S    +R +  
Sbjct: 60  SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP---DRVFNT 116

Query: 492 APQKPPSA 499
                PS+
Sbjct: 117 PEGSGPSS 124

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD-----MSRANDT 546
            P   P  V +  +N T   V W  V        + GY++  W+                
Sbjct: 13  LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKI 72

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
           +   G+     +  L P   Y + V   +  G+G  S     F   E     SG
Sbjct: 73  LTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD-RVFNTPEGSGPSSG 125

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 9e-11
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIARTNWNSTWFNVSEHVIGKE 236
           P   PG V+V  V+ T A + W           +  Y+I      +S+  N   H+  K 
Sbjct: 14  PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNR-RHIEKKI 72

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           +     +    +   L P+S Y   V   N  G G  S     +NTP    
Sbjct: 73  LTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 7e-10
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 274 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 333
           SS S  + +  D P  AP  +           + W+P+P +        Y+I++ K   +
Sbjct: 2   SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60

Query: 334 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDM 389
             ++    E   +          +P    ++ Y + V+ +N  G GP S      + E  
Sbjct: 61  SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120

Query: 390 P 390
            
Sbjct: 121 G 121

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 5e-16
 Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 12/190 (6%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           + + W+P      N    +Y +FW ++ +     E         +       +     + 
Sbjct: 19  IILKWKPP--SDPNGNITHYLVFWERQAEDSELFE---------LDYCLKGLKLPSRTWS 67

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRG 423
              ++ +           +       P+   Q +      S+      + +  +    R 
Sbjct: 68  PPFESEDSQKHNQSEYEDSAGECCSCPKTDSQ-ILKELEESSFRKTFEDYLHNVVFVPRP 126

Query: 424 RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESER 483
                 +         E    +     +   +I GL+  T Y +++ A N          
Sbjct: 127 SRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSV 186

Query: 484 YLERTYRKAP 493
               + R  P
Sbjct: 187 AAYVSARTMP 196

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 7e-16
 Identities = 23/212 (10%), Positives = 49/212 (23%), Gaps = 17/212 (8%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
            P +P     V    +   ++W   +     ITHY +        +     ++ +     
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL 61

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 298
                             T+     + +   + +           +     +        
Sbjct: 62  PSR---------------TWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEE 106

Query: 299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 358
                    +                +          +    ++  N    V+     F 
Sbjct: 107 SSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHF- 165

Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
            T Y +++QA N   P     V    SA  MP
Sbjct: 166 -TGYRIELQACNQDTPEERCSVAAYVSARTMP 196

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 3e-12
 Identities = 22/200 (11%), Positives = 47/200 (23%), Gaps = 23/200 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P    S   +S+ I + W P      +  G +  + + + ++    E           +
Sbjct: 5   VPLDPISVSNSSSQIILKWKPPS----DPNGNITHYLVFWERQAEDSEL-------FELD 53

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT------YRKAPQKPPSAVHIKGIN 506
           + L     P   +     + ++                          K       +   
Sbjct: 54  YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTF 113

Query: 507 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 566
              +H         F   P    +      +   +  +     V N     I  L     
Sbjct: 114 EDYLHNVV------FVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTG 167

Query: 567 YHMRVLAFSNGGDGRMSSPA 586
           Y + + A +        S A
Sbjct: 168 YRIELQACNQDTPEERCSVA 187

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 1e-15
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S  T   V   P  P  +++ +    S  + WT G  N  PIT + I      +      
Sbjct: 6   SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 288
                       +G +  +  N L P+  Y F+V+A N +G   PS  S QY T A +P 
Sbjct: 66  -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117

Query: 289 QAPSRIGGGG 298
           + P+     G
Sbjct: 118 KNPTSGPSSG 127

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S         D+P   P  +        ++ ++W P +     I   +I +    
Sbjct: 1   GSSGSSGPTPA-PVYDVPN-PPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAM 58

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLE-RTYRK 491
            K            ++TT      + L P   Y  +VMA N+ G+   SE   +  T   
Sbjct: 59  HKPGLWHHQTEVSGTQTTA----QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114

Query: 492 APQKPPSAVHIKG 504
            P K P++    G
Sbjct: 115 EPDKNPTSGPSSG 127

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PP  + +      +V ++W    P  +    I   +  +E              V  T  
Sbjct: 19  PPFDLELTDQLDKSVQLSWT---PGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
              ++LSP   Y  RV+A ++ G    S  +  + 
Sbjct: 76  TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL 110

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 8/134 (5%)

Query: 269 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 328
           G    S P+P      D P   P  +        D S+     P +  N+P   + I + 
Sbjct: 1   GSSGSSGPTPA--PVYDVP-NPPFDLELTD--QLDKSVQLSWTPGDDNNSPITKFIIEYE 55

Query: 329 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA-E 387
                        E            S +    Y  +V A+N +G    SE    +    
Sbjct: 56  DAMHKPGLWHHQTEVSGTQTTAQLNLSPYV--NYSFRVMAVNSIGKSLPSEASEQYLTKA 113

Query: 388 DMPQVAPQGVFSRG 401
             P   P    S G
Sbjct: 114 SEPDKNPTSGPSSG 127

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           PP  P    +    +TS  + W      G PI  +++  +       + ++   I     
Sbjct: 10  PPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 69

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 282
                        L    +Y+F+V A N LG  EPS+PS  Y  
Sbjct: 70  SVEITG-------LEKGISYKFRVRALNMLGESEPSAPSRPYVV 106

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 490 RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
           R +P + P    I   + T+V+VTW          PI  ++V   ++ +       T   
Sbjct: 7   RLSPPEAPDRPTISTASETSVYVTWI--PRGNGGFPIQSFRVEYKKLKKVGDWILATSAI 64

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
             + L  +I  L  G  Y  RV A +  G+   S+P
Sbjct: 65  PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAP 100

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
           P  AP        + T++ VTW P       I+   + ++     +   +          
Sbjct: 10  PPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYK---KLKKVGDWILATSAIPP 66

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
           +R    I GL+    Y  +V A N  GE   S 
Sbjct: 67  SRLSVEITGLEKGISYKFRVRALNMLGESEPSA 99

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
           V + +  D+P  APQ +     NS +I + W P         G++ G++I+Y K     +
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPA--PATQNGQITGYKIRYRKASRKSD 59

Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 497
                +S  T+   LI GL   T+Y  +V A    G GP ++     T+     +  
Sbjct: 60  VTETLVS-GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 115

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 5e-12
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
           RT    P   P  + ++  N  ++ + W+  +P+ +   I GYK+R  +  +        
Sbjct: 5   RTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTET- 63

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
            +  G  L   I  L  G  Y+ RV A +  G G  +  
Sbjct: 64  -LVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW 101

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 12/116 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIARTNWNSTWFNVSEHVIGKE 236
           P   P  + +   +  S  I W   A   +   IT YKI  R     +    +     + 
Sbjct: 11  PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQL 70

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK-PYQAP 291
                G         L   + Y F+V A    G G  +         +D    + P
Sbjct: 71  SQLIEG---------LDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVP 117

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 4e-10
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           T +D P  AP  +         + I W+P     QN     YKI +        +S+  +
Sbjct: 6   TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY---RKASRKSDVTE 62

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMP 390
              +       I      TEY  +V A+   G GP ++ ++  + E   
Sbjct: 63  TLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDL 111

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 2e-14
 Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S+     +   PG P   QV +V K S T+ W  G     P + Y I A +   S  +  
Sbjct: 5   SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
             + +   +    G         L P + Y F V A N  G  +PS  S    T    P
Sbjct: 65  VANHVKTTLYTVRG---------LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 9/125 (7%)

Query: 375 GPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWK 434
           G        +   D+P   P           ++ ++W P                I    
Sbjct: 1   GSSGSSGKNYDLSDLPG-PPSKPQVTDVTKNSVTLSWQP-----GTPGTLPASAYIIEAF 54

Query: 435 EDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ 494
             +   +     +        + GL+P+T Y   V A N  G    S         +   
Sbjct: 55  SQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSP---MSDPVRTQD 111

Query: 495 KPPSA 499
             PS+
Sbjct: 112 SGPSS 116

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PPS   +  +   +V ++W+    +    P   Y +  +   Q +S +  T+     T  
Sbjct: 18  PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAF--SQSVSNSWQTVANHVKTTL 73

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
             +  L P   Y   V A +  G    S  +   +  +
Sbjct: 74  YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 271 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 330
           G   S    Y   +D P   PS+          +++SW+P        P   Y I    +
Sbjct: 1   GSSGSSGKNY-DLSDLP-GPPSKPQVTDVTKNSVTLSWQPGT--PGTLPASAYIIEAFSQ 56

Query: 331 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388
           + +                V  +      T Y   V+AIN  G    S +      +D
Sbjct: 57  SVSNSWQTVANHVKTTLYTVRGLRP---NTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 5e-14
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 173 TVIVEGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSE 230
            + V   P  P         V + +  + WT       P+  Y +    N       ++ 
Sbjct: 4   HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLAS 63

Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
                      G         LVP  +Y+F++ A N++G G+ S  + + + P
Sbjct: 64  VDPKATSVTVKG---------LVPARSYQFRLCAVNDVGKGQFSKDTERVSLP 107

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
              AIN+TW              +   I    E+N   T +            + GL P 
Sbjct: 25  ERRAINLTWTK-----PFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPA 79

Query: 463 TKYYVKVMAYNNAGEGPESE 482
             Y  ++ A N+ G+G  S+
Sbjct: 80  RSYQFRLCAVNDVGKGQFSK 99

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 8e-06
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           AP+ P     +  +    +++TW    P     P+I Y + + E +   +    ++ P  
Sbjct: 13  APEHPV--ATLSTVERRAINLTWT--KPFDGNSPLIRYILEMSENNAPWTVLLASVDP-- 66

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
                 +  L P + Y  R+ A ++ G G+ S  
Sbjct: 67  KATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 100

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           ++++W            +   I    +N+  +               V+         Y+
Sbjct: 29  INLTWTK---PFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVP--ARSYQ 83

Query: 364 VKVQAINDVGPGPESEVVTIFSAED 388
            ++ A+NDVG G  S+     S  +
Sbjct: 84  FRLCAVNDVGKGQFSKDTERVSLPE 108

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSC 60
            G +V +F            W K    I      K+        L I    ++  G Y+ 
Sbjct: 14  AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTL 73

Query: 61  TATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 92
              N  G  +++  L V+  P      PP  T
Sbjct: 74  LVENKLGSRQAQVNLTVVDKPD-----PPAGT 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 145
           Q P    + A  +++L       + +   ++     ++              + +G  L 
Sbjct: 5   QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHM-----KVENSENGSKLT 59

Query: 146 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV 186
           I  A     G Y  +V++ +G    +  + V   P  P G 
Sbjct: 60  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 100

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 2e-13
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYS 59
              V   C     P P   W K+G       R   +    ++ +L++  V   D G Y+
Sbjct: 19 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 78

Query: 60 CTATNVHGMDESKGRLIVL 78
          C   N +G       L V+
Sbjct: 79 CVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 85  EQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 143
           E++  ++  + A   ++ RC A    +  +   W  NG          +    +      
Sbjct: 8   EKMEKRLHAVPAANTVKFRCPAGGNPMPTM--RWLKNGKEFKQEH--RIGGYKVRNQHWS 63

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
           L + +   +D G Y CVV++  G I+    + V
Sbjct: 64  LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          +G +VTI C     P P  VW  +   +  G  R    +  L+I  V   D G Y C AT
Sbjct: 17 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVTDSGLVIKGVKNGDKGYYGCRAT 74

Query: 64 NVHGMDESKGRLIV 77
          N HG    +  + V
Sbjct: 75 NEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 10/96 (10%)

Query: 81  PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
           P Y ++    I +   +++ + C        +V +            +   L      + 
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH----------NAKPLSGGRATVT 52

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
              L I      D G Y C   +  G    +T V V
Sbjct: 53  DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 170 TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 229
           T ++ +    PG P  + +  +   S T+Q+  G      I+ + + A+           
Sbjct: 1   TISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWL 60

Query: 230 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 282
                             + + L P++ Y F++   N +G   PS PS +  T
Sbjct: 61  LIHQLSNEPDAR---SMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 109

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 5e-07
 Identities = 13/90 (14%), Positives = 28/90 (31%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +        ++ + + P    + +I   L+  ++    E           +     
Sbjct: 13  PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDAR 72

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +  L P T Y  ++   N  G  P S+
Sbjct: 73  SMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ 102

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
           PP+ + I  I P +V + +R            +         + +       +    +  
Sbjct: 13  PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDAR 72

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
             ++ DL+P   Y  R+   +  G    S P+   Q
Sbjct: 73  SMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 8e-13
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 167 KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF 226
           ++ T+  V +   PG    ++      TS T+ W    +    I +YK+           
Sbjct: 1   RVETQPEVQL---PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQ 57

Query: 227 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
           +V        ++             L  ++ Y F+V+A N+ G G  +  
Sbjct: 58  DVDVSSHSYTING------------LKKYTEYSFRVVAYNKHGPGVSTPD 95

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
               + +   + T+I VTW        +  G +  +++ Y ++   +E  V   S +   
Sbjct: 13  PAPNLRAYAASPTSITVTWET----PVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTI 68

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
                GL+  T+Y  +V+AYN  G G  +     RT
Sbjct: 69  N----GLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 100

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           P   +     +PT++ VTW   +P      I  YK+   E   D  +  D      ++  
Sbjct: 13  PAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYMEKGTDKEQDVDV-----SSHS 65

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
             I  L     Y  RV+A++  G G +S+P +  +   +
Sbjct: 66  YTINGLKKYTEYSFRVVAYNKHGPG-VSTPDVAVRTLSD 103

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           ++++WE       N     YK+++ +K   + Q        +V      I     YTEY 
Sbjct: 27  ITVTWET--PVSGNGEIQNYKLYYMEKGTDKEQ------DVDVSSHSYTINGLKKYTEYS 78

Query: 364 VKVQAINDVGPGPESEVVTIFSAED 388
            +V A N  GPG  +  V + +  D
Sbjct: 79  FRVVAYNKHGPGVSTPDVAVRTLSD 103

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEE 440
           I + E  P   P  V  +   S +I VTW   +   +N  IRG  IG+R      +    
Sbjct: 1   ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYS 60

Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
                 +        +  L+   +Y V V A+N AG GP S      T
Sbjct: 61  IVEMKAT-GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 107

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD--MSRAN 544
            T   AP  PP  V ++ +   ++ VTW+      +   I GY++   E         + 
Sbjct: 2   STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSI 61

Query: 545 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
             +   G++    + +L    +Y + V AF+  G G  SS 
Sbjct: 62  VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE 102

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 168 ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTW 225
           IST+       P G P  V +  V   S  + W           I  Y+I  R N   + 
Sbjct: 1   ISTEEAA----PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSN 56

Query: 226 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
              S   +    D        +++N L  ++ Y   V A N  G G  SS 
Sbjct: 57  GQYSIVEMKATGDSEV----YTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 102

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           T    P   P  +         + ++W+   +E QN     Y+I +R+ +       ++ 
Sbjct: 3   TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 62

Query: 342 E-YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAE 387
           E        V  + +   + +Y V VQA N  G GP S  +   + E
Sbjct: 63  EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 109

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 372 VGPG-PESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRI 430
           +G G P    +   + +D+P   P G+      +T++ + W P         G ++ ++I
Sbjct: 2   IGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPA----APNGIILAYQI 56

Query: 431 KYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
            +        TA   +   +       GL+P++ Y  ++ A    G G  +E
Sbjct: 57  THRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAE 108

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           +  PG P G+   EV  TS  + W   A     I  Y+I  R N  +      E +    
Sbjct: 18  DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSA 77

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                  ++ +    L P S Y F++ A    G+GE +  
Sbjct: 78  -------RQYTATG-LKPESVYLFRITAQTRKGWGEAAEA 109

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 7e-09
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 268 LGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 327
           +G G PS P     T  D P   P  I     +   + + W+P      N   + Y+I  
Sbjct: 2   IGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPP--AAPNGIILAYQITH 58

Query: 328 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAE 387
           R    T   +       +              + Y  ++ A    G G  +E + + + +
Sbjct: 59  RLNTTTANTATVEVLAPSARQYTATGLKP--ESVYLFRITAQTRKGWGEAAEALVVTTEK 116

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 476 GEG-PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVW 534
           G+G P     LERT    P  PP  +    +  T+V + W+   P      II       
Sbjct: 3   GDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ---PPAAPNGIILAYQITH 58

Query: 535 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
            ++   +      +   +        L P   Y  R+ A +  G G  +   +
Sbjct: 59  RLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALV 111

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 9/107 (8%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           E  PG  G +   E+  TS  + W +       +T Y+I       +             
Sbjct: 8   EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYL----- 62

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
                          L   +TY  +V A    G G+ S+ +     P
Sbjct: 63  ----PNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP 105

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
             + + ED+P      +       T++ V+W           G L G+RI + + +    
Sbjct: 2   QLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQE----PGEKNGILTGYRISWEEYNRTNT 56

Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +YL   T     + GL   T Y ++V A  + G+G  S 
Sbjct: 57  RVTHYLPNVTL-EYRVTGLTALTTYTIEVAAMTSKGQGQVSA 97

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
           RT+   P  P   +    I  T++ V+W+   P  +   + GY++   E ++  +R   T
Sbjct: 5   RTHEDVPG-PVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEEYNRTNTRV--T 59

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
                 TL+  +  L+    Y + V A ++ G G++S+  I+
Sbjct: 60  HYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTIS 101

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           T  D P      +         L +SW+     ++N     Y+I W + N T  +     
Sbjct: 6   THEDVP-GPVGHLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRTNTRVTH-- 60

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 382
            Y        R+      T Y ++V A+   G G  S    
Sbjct: 61  -YLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 100

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
            P K P  V  +G  P  + ++W  +       P   Y V         +  N+ I    
Sbjct: 3   VPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD-W 61

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 595
              +  I D     +Y ++V+A ++ G+  +++  +    GE++
Sbjct: 62  RQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 105

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
           D+P   P  V  +G     + ++W P  +           + + + ++          + 
Sbjct: 2   DVPFKNPDNVVGQGTEPNNLVISWTP--MPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF 59

Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +N  +I       KY +KV+A N+ GE   + 
Sbjct: 60  DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAA 94

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 285 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 344
           D P++ P  + G G +  +L ISW P+P  + NAPN +Y + W++               
Sbjct: 2   DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENN--NIF 59

Query: 345 NVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES-EVVTIFSAED 388
           +     + I  +  + +Y +KV AIND G    + E V  +S ED
Sbjct: 60  DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 104

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 46.5 bits (109), Expect = 5e-07
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDG--ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           P   P  V        +  I WT      +  P  HY +  + +  +  +  +     ++
Sbjct: 4   PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 63

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 286
                      I +    +  Y  KV+A N+ G    ++      +  D+
Sbjct: 64  -------NNIVIAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 105

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              P +P   ++    K S T+QW   + NG  I ++ +       +  F          
Sbjct: 8   SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEF---------- 57

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
              Y G ++      L P    +F++ A N+ G    S   
Sbjct: 58  CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 98

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
            T    P   P+   I      ++ + W+  +PS     I  + +   E   +       
Sbjct: 5   TTLSCEPD-IPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVLEWDEGKGNGEFCQCY 61

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG 592
              +G+     I  LSP      R+ A ++ G    S   + +  G
Sbjct: 62  ---MGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 104

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 11/100 (11%), Positives = 23/100 (23%), Gaps = 6/100 (6%)

Query: 383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA 442
           IF+        P           ++ + W         I+  ++         +  +   
Sbjct: 3   IFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYM 62

Query: 443 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                             P      ++ A N+ G    SE
Sbjct: 63  GSQKQFKITKL------SPAMGCKFRLSARNDYGTSGFSE 96

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 7/105 (6%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           T + +P   P+           L++ W+        +    + + W +        +   
Sbjct: 6   TLSCEP-DIPNPPRIANRTKNSLTLQWKAPSD--NGSKIQNFVLEWDEGKGNGEFCQC-- 60

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSA 386
                     +I         + ++ A ND G    SE V  +++
Sbjct: 61  --YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 9e-12
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 10/100 (10%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           +  P     ++     +TS ++ W +       I  Y+I             S   +   
Sbjct: 1   QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQ---SYSTLKAV 57

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
             R T      +   L P + Y F+V A    G G  S  
Sbjct: 58  TTRAT------VSG-LKPGTRYVFQVRARTSAGCGRFSQA 90

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
               +       T++++ W       E   G ++ + IKY+++D   ++  Y   +    
Sbjct: 6   QVVVIRQERAGQTSVSLLWQE----PEQPNGIILEYEIKYYEKDKEMQS--YSTLKAVTT 59

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
            A + GL+P T+Y  +V A  +AG G  S+     T
Sbjct: 60  RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET 95

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           AP      +  +    T+V + W+   P      I+ Y+++ +E D++M   +       
Sbjct: 3   APS-QVVVIRQERAGQTSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEMQSYSTL---KA 56

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
            T  A +  L PG RY  +V A ++ G GR S   +  + G+
Sbjct: 57  VTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQA-MEVETGK 97

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           +S+ W+    E+ N   + Y+I + +K+       TL            +      T Y 
Sbjct: 20  VSLLWQE--PEQPNGIILEYEIKYYEKDKEMQSYSTL----KAVTTRATVSGLKPGTRYV 73

Query: 364 VKVQAINDVGPGPESEVVTIFSAE 387
            +V+A    G G  S+ + + + +
Sbjct: 74  FQVRARTSAGCGRFSQAMEVETGK 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P   P  + V +V  T+ T++W      G   I  Y +      +  W   ++  + +  
Sbjct: 1   PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 60

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                             +   F+V+  N  G  EP++  
Sbjct: 61  FTVKDL---------PTGARILFRVVGVNIAGRSEPATLL 91

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
           P  APQ +       T   + W P +       G + G+ +  +  +  EE         
Sbjct: 1   PTSAPQHLTVEDVTDTTTTLKWRPPD---RIGAGGIDGYLV-EYCLEGSEEWVPANKEPV 56

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
            R    +  L    +   +V+  N AG    + 
Sbjct: 57  ERCGFTVKDLPTGARILFRVVGVNIAGRSEPAT 89

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
           P   P  + ++ +  TT  + WR          I GY V       +     +       
Sbjct: 1   PTSAPQHLTVEDVTDTTTTLKWR-PPDRIGAGGIDGYLVEYCLEGSEEWVPANKE--PVE 57

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
                + DL  G R   RV+  +  G    ++  
Sbjct: 58  RCGFTVKDLPTGARILFRVVGVNIAGRSEPATLL 91

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 4/85 (4%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
            ++ W P P          Y + +  +   E+          V      +          
Sbjct: 18  TTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVPAN---KEPVERCGFTVKDLPTGARIL 73

Query: 364 VKVQAINDVGPGPESEVVTIFSAED 388
            +V  +N  G    + ++   +  +
Sbjct: 74  FRVVGVNIAGRSEPATLLQPVTIRE 98

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----------------GGRRKIFENGNLLI 47
            GG+V   C   +  +P   W K     GS                G      E   L I
Sbjct: 19  VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYI 78

Query: 48  SPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
             V+ +D+G Y+C A N  G+      L VL
Sbjct: 79  RNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 79  HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW--THNGVRIGNMDLNELETPN 136
           H P     LP   +     +++  C  +++    + +I     NG + G   L  L+   
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 137 INI------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
                    +  +L I N +F DAGEY C+  +++G       + V
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 23/95 (24%), Positives = 37/95 (38%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
           P   P       +N TT+ + W Y+  S    PI G+ +     D D        +  G+
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
                I  L P   Y +++  F+ GG+   S+  I
Sbjct: 61  RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMI 95

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 3e-09
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPI--ELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 447
           P   P   F+   N T I + W  I        I G  I +R      D+  +  +    
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60

Query: 448 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
           R       I  LQP+T Y +K+  +N  GE   S   +  T
Sbjct: 61  RYW---HSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 98

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P   P       V++T+  ++W           +   I          +       K+  
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYI----PASNNNTPIHGFYIYYRPTDSDNDSDYKKDM 56

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
               R   SI + L P ++Y+ K+   NE G  E S+ 
Sbjct: 57  VEGDRYWHSISH-LQPETSYDIKMQCFNEGGESEFSNV 93

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           + + W  +P    N P I+    + +  D++  S+  K+          I      T Y+
Sbjct: 18  IMLKWMYIPASNNNTP-IHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYD 76

Query: 364 VKVQAINDVGPGPESEVVTI 383
           +K+Q  N+ G    S V+  
Sbjct: 77  IKMQCFNEGGESEFSNVMIC 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
          YA  G  VT+ C     P P+  W+K          + +     L I  V  +D G Y C
Sbjct: 16 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQT---SKWLSSEPLLHIQNVDFEDEGTYEC 72

Query: 61 TATNVHGMDESKGRLIV 77
           A N+ G D  +GR+I+
Sbjct: 73 EAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 11/99 (11%)

Query: 79  HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
           + PS   + P        + + L C A    +  + +                       
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT-----------SKWL 51

Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
               LL I N  F D G YEC  ++  G+ + +  +I+ 
Sbjct: 52  SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 3e-11
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 179 PPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           PPG     ++          ++W       G PI+ Y +                     
Sbjct: 1   PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEP----------- 49

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            + Y G +     + L+P  TY F++ A N++G+G  S   
Sbjct: 50  REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 493 PQKPPSAVHIKG-INPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           P  P     ++G      + + W          PI  Y V +  +++D  R        G
Sbjct: 1   PPGPCLPPRLQGRPKAKEIQLRWG-PPLVDGGSPISCYSVEMSPIEKDEPREVYQ----G 55

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
           + ++  +  L PGK Y  R+ A +  G G  S   
Sbjct: 56  SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           + + W P P     +P   Y +        E +                + S      Y 
Sbjct: 19  IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPREVY-----QGSEVECTVSSLLPGKTYS 72

Query: 364 VKVQAINDVGPGPESEVVTIFSA 386
            +++A N +G GP SE   I +A
Sbjct: 73  FRLRAANKMGFGPFSEKCDITTA 95

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
            +  I + W P         G  I            +E    Y  + +     +  L P 
Sbjct: 15  KAKEIQLRWGP----PLVDGGSPISCYSVEMSPIEKDEPREVY--QGSEVECTVSSLLPG 68

Query: 463 TKYYVKVMAYNNAGEGPESE 482
             Y  ++ A N  G GP SE
Sbjct: 69  KTYSFRLRAANKMGFGPFSE 88

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 381 VTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE 440
           + + +   +P   P    +   + T+I ++W P           +  + + Y   ++ EE
Sbjct: 2   IQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR------SDTIANYELVYKDGEHGEE 54

Query: 441 TAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
             +            + GL+P++ YY ++ A +  G G  +     RT
Sbjct: 55  QRITI---EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISART 99

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
            G PG P   +     +TS  + WT   ++   I +Y+++ +   +     ++       
Sbjct: 8   TGVPGQPLNFKAEPESETSILLSWTPPRSD--TIANYELVYKDGEHGEEQRIT------- 58

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                      ++  L P S Y F++ A +  G G  ++ 
Sbjct: 59  ---IEPGTSYRLQG-LKPNSLYYFRLAARSPQGLGASTAE 94

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P     +  + T++ ++W   +P    + I  Y++   + +       +  I +     
Sbjct: 13  QPLNFKAEPESETSILLSW---TPP-RSDTIANYELVYKDGEHGE----EQRITIEPGTS 64

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP--AITFQ 590
             +  L P   Y+ R+ A S  G G  ++   A T Q
Sbjct: 65  YRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 4/29 (13%), Positives = 13/29 (44%)

Query: 359 YTEYEVKVQAINDVGPGPESEVVTIFSAE 387
            + Y  ++ A +  G G  +  ++  + +
Sbjct: 73  NSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.2 bits (137), Expect = 7e-11
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-----ENGNLLISPVSRDDSG 56
          A  G +VT+ C+ +  P+P   W KDG  I +            ++  L I  V ++D  
Sbjct: 17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 76

Query: 57 IYSCTATNVHGMDESKGRLIVL 78
           Y C A N  G  ++   L V 
Sbjct: 77 EYVCIAENKAGEQDASIHLKVF 98

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 87  LPPKI---------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 137
           +PP +         T    +++ L C A       +   WT +G  I N + ++ +    
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM--SWTKDGEPIENEEEDDEKH-IF 58

Query: 138 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
           + D   L I N    D  EY C+ ++  G+      + V
Sbjct: 59  SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P    V  +   S  ++W     +G PI  +K+  R       +  +   I     ++  
Sbjct: 3   PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 62

Query: 243 RKEASIENV---LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
               S       L P  TY F+++A       + S+ S ++   
Sbjct: 63  ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD----------MSRAND 545
           PP+  ++  ++  +V + W    P  +  PI+ +KV+   V +                 
Sbjct: 2   PPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 59

Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
               +G +  A + DL P   Y  R+LA  +  D + S+ +  F
Sbjct: 60  WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF 103

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE-------DNPEETAVYYL 446
           P        +  ++ + W         I    + +R+   ++       + P     +  
Sbjct: 3   PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 62

Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                  A +  L+P   Y  +++A  +  +  ES 
Sbjct: 63  ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 98

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 387 EDMPQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY 444
           E +P   P+   V S+      I V W P       I G +I +      E +       
Sbjct: 8   ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV 67

Query: 445 YLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
             +R T     I  L  DT YY K+ A N+ G GP SE    RT
Sbjct: 68  VGNRLT---HQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 108

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 4e-10
 Identities = 22/99 (22%), Positives = 34/99 (34%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
            T+   P  PP  V +         +   +  PS     I GY +               
Sbjct: 5   TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVI 64

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
              VGN L   I +L+    Y+ ++ A ++ G G MS  
Sbjct: 65  EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEA 103

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 179 PPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           P   P  V VV  E    +  + W   +     IT Y I   T+ N+   +     +   
Sbjct: 11  PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGN 70

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
              +  ++       L   + Y FK+ A N  G G  S    Q+ TP
Sbjct: 71  RLTHQIQE-------LTLDTPYYFKIQARNSKGMGPMSEAV-QFRTP 109

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 1/102 (0%)

Query: 282 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 341
           T    P   P  +     +    +I     P  + N     Y I++    + E       
Sbjct: 6   TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWV-I 64

Query: 342 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 383
           E         +I      T Y  K+QA N  G GP SE V  
Sbjct: 65  EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQF 106

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL----ISPVSRDDSGIYS 59
          +G +          P P+  W K+G  I    R   +   + +    I  V+ +DS    
Sbjct: 18 QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIM 77

Query: 60 CTATNVHGMDESKGRLIV 77
            A N+ G   S   L+V
Sbjct: 78 VKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 5/98 (5%)

Query: 81  PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
           P  +E++    T+    +   R     +   +  +      +   +         N+   
Sbjct: 5   PKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 178
                I + +  D+        +  G+ S+   ++V+ 
Sbjct: 64  ----VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 5e-10
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P  PG +    V  T   + W + A     IT Y++      +             +V  
Sbjct: 3   PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMK----KVLV 58

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
              +    +   L     Y + V A N  G+G          T 
Sbjct: 59  DNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSF-EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
            P  +    ++ T   ++W   + +  E          V + ++ +      ++      
Sbjct: 5   EPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNR 64

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
              I +L   + Y   V A +  G G      I   
Sbjct: 65  MLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA 100

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 18/90 (20%), Positives = 27/90 (30%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +     +ST   ++W         I    + + +               +      
Sbjct: 5   EPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNR 64

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             LI  L+    Y   V A N AG GPE E
Sbjct: 65  MLLIENLRESQPYRYTVKARNGAGWGPERE 94

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 13/84 (15%), Positives = 23/84 (27%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             +SW                      ++            N    ++ I +      Y 
Sbjct: 19  TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 78

Query: 364 VKVQAINDVGPGPESEVVTIFSAE 387
             V+A N  G GPE E +   + +
Sbjct: 79  YTVKARNGAGWGPEREAIINLATQ 102

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 5e-10
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 10/98 (10%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P     +  V     S T+ W         I  Y+I      ++ + +            
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM---------- 50

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
              +   +  + L P   Y  +V A    GYG+ S   
Sbjct: 51  ARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 88

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
               +        +I ++W   E     I    I +  K   E N          R+  N
Sbjct: 3   TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMA------RSQTN 56

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
            A I GL+P   Y V+V A   AG G  S +   +T
Sbjct: 57  TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 92

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
               +H       ++ ++W           I+ Y++R +E + +     ++ +    T  
Sbjct: 3   TVPIMHQVSATMRSITLSWPQPEQP--NGIILDYEIRYYEKEHNE---FNSSMARSQTNT 57

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
           A I  L PG  Y ++V A +  G G+ S   + FQ
Sbjct: 58  ARIDGLRPGMVYVVQVRARTVAGYGKFSGK-MCFQ 91

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           +++SW    +      +   + + ++ N+        +          RI        Y 
Sbjct: 17  ITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTN------TARIDGLRPGMVYV 70

Query: 364 VKVQAINDVGPGPESEVVTIFSAED 388
           V+V+A    G G  S  +   +  D
Sbjct: 71  VQVRARTVAGYGKFSGKMCFQTLTD 95

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
          A  G ++   C     P+P  V         +   R     G L  S +  +DSG+Y C 
Sbjct: 13 ADIGSDLRWSCVASGKPRPA-VRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCV 71

Query: 62 ATNVHGMDESKGRLIV 77
          A N HG   +   L V
Sbjct: 72 AENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 145
            +          +L+  C A  +    V ++                    I + GG L 
Sbjct: 6   DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ---------PLASQNRIEVSGGELR 56

Query: 146 ITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
            +     D+G Y+CV ++  G +     + V+
Sbjct: 57  FSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           PG P  + +      +A +QW         +  Y++       +                
Sbjct: 1   PGRPTMM-ISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARP----------NTID 49

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 285
           +    +      L   +TY F++ A N  G GE      +  TP D
Sbjct: 50  FGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPED 93

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
                 + W+P     + + G L+G+R++Y + D      + +          + GL   
Sbjct: 12  AMNTALLQWHP----PKELPGELLGYRLQYCRADEARPNTIDFGKDDQH--FTVTGLHKG 65

Query: 463 TKYYVKVMAYNNAGEGPESE 482
           T Y  ++ A N AG G E E
Sbjct: 66  TTYIFRLAAKNRAGLGEEFE 85

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
           P +P   + I      T  + W    P      ++GY+++    D+      D      +
Sbjct: 1   PGRPT--MMISTTAMNTALLQWH--PPKELPGELLGYRLQYCRADEARPNTIDF---GKD 53

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
                +  L  G  Y  R+ A +  G G      I 
Sbjct: 54  DQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR 89

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 8e-05
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
             + W P   ++     + Y++ + + ++                    +      T Y 
Sbjct: 16  ALLQWHP--PKELPGELLGYRLQYCRADEARPN----TIDFGKDDQHFTVTGLHKGTTYI 69

Query: 364 VKVQAINDVGPGPESEVVTI 383
            ++ A N  G G E E    
Sbjct: 70  FRLAAKNRAGLGEEFEKEIR 89

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 175 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
           IV+  P  P    +       A I W     N  PI HY I   T++    ++ +   + 
Sbjct: 1   IVQDVPNAPKLTGI-TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 282
                +  +        + PW+ Y F+VIA N++G   PS+ S    T
Sbjct: 60  NTDSSFVVQ--------MSPWANYTFRVIAFNKIGASPPSAHSDSCTT 99

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT 553
           Q  P+A  + GI          +        PI+ Y ++        S            
Sbjct: 3   QDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62

Query: 554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 589
             + +V +SP   Y  RV+AF+  G    S+ + + 
Sbjct: 63  -SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSC 97

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
            +    + W      R  I    I     +              + ++     +V + P 
Sbjct: 17  QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSF----VVQMSPW 72

Query: 463 TKYYVKVMAYNNAGEGPESE 482
             Y  +V+A+N  G  P S 
Sbjct: 73  ANYTFRVIAFNKIGASPPSA 92

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 176 VEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
               PG+P    V  ++H  S  I W     NG    +  ++     ++       +   
Sbjct: 7   CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY--- 63

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
                 +G     + + L P   Y  +V   ++ G    S       TPA
Sbjct: 64  ------SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLL-VQTPA 106

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 380 VVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE 439
           VV   +  D P +  +       +S +  +TW+P    ++N    +  + ++  +  N  
Sbjct: 1   VVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPP---KDNGGATINKYVVEMAEGSNGN 57

Query: 440 ETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
           +  + Y         L   L P   Y ++V   ++ G+   SE
Sbjct: 58  KWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE 98

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 546
            T    P  P        I+  +  +TW       ++         V E+ +  +     
Sbjct: 5   TTCPDKPGIPVKPSVKGKIHSHSFKITWD----PPKDNGGATINKYVVEMAEGSNGNKWE 60

Query: 547 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
           +I  G T +     L+PG  Y +RV   S+GG   +S  
Sbjct: 61  MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSES 99

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
          EG +   +C   A+  P   W KD   +    +     NGN   L I+ V  DD G Y+ 
Sbjct: 15 EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTV 74

Query: 61 TATNVHGMDESKGRLIV 77
           A N +G  E    L V
Sbjct: 75 RAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 5/94 (5%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           P    +   ++    C         V +           +  +       N +   L I 
Sbjct: 8   PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDR-----ELKQSVKYMKRYNGNDYGLTIN 62

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
                D GEY    K++ G       + V     
Sbjct: 63  RVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P   PG    + + + + T++W      G   IT Y +  R   N  W   +   I +  
Sbjct: 2   PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 61

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 277
              +G         L   + YEF+VIA N  G    PS PS
Sbjct: 62  FTVSG---------LTEDAAYEFRVIAKNAAGAISPPSEPS 93

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           +P  PP       I   TV + W     +   +       +    +    +AN + I   
Sbjct: 1   SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI--- 57

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
              +  +  L+    Y  RV+A +  G     S  
Sbjct: 58  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP 92

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
           P   P            + + W   E          I   I   ++           S  
Sbjct: 2   PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFK----ITSYIVEKRDLPNGRWLKANFSNI 57

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGE-GPESE 482
             N   + GL  D  Y  +V+A N AG   P SE
Sbjct: 58  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSE 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
          EG +    C+ +  P P   W + G ++ +  R ++          IS V   D G YS 
Sbjct: 13 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 72

Query: 61 TATNVHGMDESKGRLIV 77
             N  G  E++  L +
Sbjct: 73 VVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           P  +T+    + +  C    E +  V ++     +                      EI+
Sbjct: 6   PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF-----EIS 60

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVE 177
           +   +D G Y  VV+++ GK   + T+ ++
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
          EG      C  E  P P+ +W KD N +      +I  +      L IS V  DD   Y+
Sbjct: 22 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 81

Query: 60 CTATNVHGMDESKGRLIV 77
          C A N  G       L+V
Sbjct: 82 CKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 79  HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 138
           H   Y+ +    + +      +  C        +V +    N V+       + +     
Sbjct: 6   HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 139 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
                  I+     D  +Y C   +++G+ +    ++VE
Sbjct: 66  SL----TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 179 PPGLPGGVQVV-EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           PP  P  +  +  +   S   QW  G     P +      R+  +  +   +      + 
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 274
            +            L+ +      V A N LG  E  
Sbjct: 64  RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESP 97

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 5e-09
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 4/123 (3%)

Query: 166 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW-TDGATNGRPITHYKIIARTNWNST 224
           G    + T   E            ++   +  + W    +          +     +   
Sbjct: 4   GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63

Query: 225 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
             +  +    K V         ++ + L P   Y  KV A      G PS     + T +
Sbjct: 64  ISSTGKDGKYKSVYVGEET-NITLND-LKPAMDYHAKVQAEYNSIKGTPSEAE-IFTTLS 120

Query: 285 DKP 287
            +P
Sbjct: 121 CEP 123

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 15/137 (10%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIE-----LIRENIRGRLIG 427
           G         + S    P  +          +  + +TW+P          E+    L G
Sbjct: 7   GDEETKAFEALLSNIVKPVAS-------DIQARTVVLTWSPPSSLINGETDESSVPELYG 59

Query: 428 HRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER 487
           + +         +    Y+   T     +  L+P   Y+ KV A  N+ +G  SE  +  
Sbjct: 60  YEVLISSTGKDGKYKSVYVGEETN--ITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFT 117

Query: 488 TYRKAPQKPPSAVHIKG 504
           T    P   P+   I G
Sbjct: 118 TLSCEPD-IPNPPRISG 133

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 11/126 (8%)

Query: 491 KAPQKPPSAVHIKGINPTTVHVTWRYVSP-------SFEEEPIIGYKVRVWEVDQDMSRA 543
           +A            I   TV +TW   S              + GY+V +    +D    
Sbjct: 15  EALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKY- 73

Query: 544 NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPA 603
               + VG   +  + DL P   YH +V A  N   G  S     F     +      P 
Sbjct: 74  --KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA-EIFTTLSCEPDIPNPPR 130

Query: 604 LYSAST 609
           +   S+
Sbjct: 131 ISGPSS 136

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 7e-09
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 180 PGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P  P  + V   E   +   + WT+ +     I  Y I  RT   STW  +         
Sbjct: 5   PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--TPADKPYQAPS 292
             +T +        L P++ Y F++    E G G  S  S + +  T  D+P + PS
Sbjct: 65  SSFTVQD-------LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-06
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 397 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALI 456
           V +    S+ + +TW    +    I    I +R K     +         +R++      
Sbjct: 13  VINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQ-- 70

Query: 457 VGLQPDTKYYVKVMAYNNAGEGPESERYLE---RTYRKAPQKPPS 498
             L+P T+Y  ++      G+G  S+   E    TY   P K PS
Sbjct: 71  -DLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PP  + +      +  +   + +PS +   I+ Y ++    D                  
Sbjct: 7   PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSS 66

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 595
             + DL P   Y  R+      G G  S  S   +    E++
Sbjct: 67  FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 108

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 8e-09
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P +P    + +   T  ++QW+  +          I+      S +              
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFK--------PKY 52

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                  +++N L   + Y+FKVIA N  G   PS   
Sbjct: 53  DGEDLAYTVKN-LRRSTKYKFKVIAYNSEGKSNPSEVV 89

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P++  +     T + + W   S     +  I Y + + E                  L 
Sbjct: 3   MPASPVLTKAGITWLSLQWSKPSG-TPSDEGISYILEMEEETSGYGFKPKYDG---EDLA 58

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 585
             + +L    +Y  +V+A+++ G    S  
Sbjct: 59  YTVKNLRRSTKYKFKVIAYNSEGKSNPSEV 88

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P          T +++ W+       +     I + ++  +E +       Y       
Sbjct: 3   MPASPVLTKAGITWLSLQWSKPSGTPSDE---GISYILEMEEETSGYGFKPKYDGEDLA- 58

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +  L+  TKY  KV+AYN+ G+   SE
Sbjct: 59  -YTVKNLRRSTKYKFKVIAYNSEGKSNPSE 87

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P  P  V    V      + W   A++       Y +       +     +    G+   
Sbjct: 11  PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 70

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                        L+P + Y F+V+A N+ G GE S+P
Sbjct: 71  TIQN---------LMPATVYIFRVMAQNKHGSGESSAP 99

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP+ V +   ++  I +TW        +  G  + + + Y KE    E            
Sbjct: 13  APRDVVASLVSTRFIKLTWRTPA---SDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQ 69

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
              I  L P T Y  +VMA N  G G  S      T
Sbjct: 70  VT-IQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 104

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEE-PIIGYKVRVWEVDQDMSRANDTIIPVGNTL 554
            P  V    ++   + +TWR  +P+ +     + Y V   +      R  +T  P    +
Sbjct: 13  APRDVVASLVSTRFIKLTWR--TPASDPHGDNLTYSVFYTKEGIARERVENTSHP--GEM 68

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
              I +L P   Y  RV+A +  G G  S+P +  +   E
Sbjct: 69  QVTIQNLMPATVYIFRVMAQNKHGSGESSAP-LRVETQPE 107

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 281 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 340
            T    P  AP  +         + ++W   P    +  N+ Y +F+ K+     + E  
Sbjct: 5   ATTGPLP-SAPRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIARERVE-- 60

Query: 341 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAED 388
               + G   V I +    T Y  +V A N  G G  S  + + +  +
Sbjct: 61  -NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 107

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 8e-09
 Identities = 12/98 (12%), Positives = 23/98 (23%), Gaps = 8/98 (8%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
              + G V           + W +       I  Y++  R   +                
Sbjct: 4   ADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
               R         +    Y  ++ A +  G G  + P
Sbjct: 64  GCRLR--------GLSPGNYSVRIRATSLAGNGSWTEP 93

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 4/102 (3%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
                   V  +      VH+ W       E   +I      +    D            
Sbjct: 3   KADDIVGPVTHEIFENNVVHLMW---QEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHF 59

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
                  +       Y +R+ A S  G+G  + P   F + +
Sbjct: 60  ALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEP-TYFYVTD 100

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 446
           E         V    F +  +++ W   +     I    + + + Y +  + E       
Sbjct: 1   EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLI----VLYEVSYRRYGDEELHLCDTR 56

Query: 447 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                     +       Y V++ A + AG G  +E
Sbjct: 57  KHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTE 92

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           + + W+     K+    I       ++   E                 R+        Y 
Sbjct: 21  VHLMWQE---PKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRL-RGLSPGNYS 76

Query: 364 VKVQAINDVGPGPESEVVTIFSAEDM 389
           V+++A +  G G  +E    +  + +
Sbjct: 77  VRIRATSLAGNGSWTEPTYFYVTDYL 102

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P      QV     T A + W    +NG  +T Y++       S         +  E+  
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKG 60

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
                       L P +TY  +V A + +G G  S       TP 
Sbjct: 61  ------------LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPP 92

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
             +       ++T   V W        ++         +Y  E    E ++         
Sbjct: 3   QCKPPQVTCRSATCAQVNWEVPLSNGTDV--------TEYRLEWGGVEGSMQICYCGPGL 54

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 498
              I GL P T YY +V A +  G GP SE     T       PPS
Sbjct: 55  SYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT-------PPS 93

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
                 +   + T   V W    P      +  Y++    V+  M      I   G  L 
Sbjct: 3   QCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 55

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 586
            +I  LSP   Y+ RV A S  G G  S   
Sbjct: 56  YEIKGLSPATTYYCRVQALSVVGAGPFSEVV 86

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 6/83 (7%)

Query: 301 IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 360
                                 Y++ W     +                   I      T
Sbjct: 12  RSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGL------SYEIKGLSPAT 65

Query: 361 EYEVKVQAINDVGPGPESEVVTI 383
            Y  +VQA++ VG GP SEVV  
Sbjct: 66  TYYCRVQALSVVGAGPFSEVVAC 88

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
           P + P GV +   +   I +TW    L +         + +++              + T
Sbjct: 1   PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 60

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 489
                L+ GL+P+T Y   VM          S      T+
Sbjct: 61  LS--YLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 98

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 3/101 (2%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
           P  PP  V    ++  T+ +TW   S    ++        V       +           
Sbjct: 1   PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 60

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI--TFQM 591
                +  L P   Y   V+          S  A   TF++
Sbjct: 61  L-SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 100

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 6/98 (6%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P   P GVQ   +   +  I W D                 +   T    +      +  
Sbjct: 1   PMMPPVGVQASILSHDTIRITWAD------NSLPKHQKITDSRYYTVRWKTNIPANTKYK 54

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
                  + +   L P + YEF V+          S  
Sbjct: 55  NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           APQ   ++   S  I+  W P         G+ +G+R+KYW + + E  A    S+    
Sbjct: 4   APQNPNAKAAGSRKIHFNWLPP-------SGKPMGYRVKYWIQGDSESEAHLLDSKVP-- 54

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
              +  L P   Y +KV AY   GEGP S     RT
Sbjct: 55  SVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT 90

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P   + K      +H  W            +GY+V+ W      S A+           
Sbjct: 4   APQNPNAKAAGSRKIHFNW-----LPPSGKPMGYRVKYWIQGDSESEAHLL---DSKVPS 55

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
            ++ +L P   Y M+V A+   G+G  SS  ++ +  +
Sbjct: 56  VELTNLYPYCDYEMKVCAYGAQGEGPYSSL-VSCRTHQ 92

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 15/96 (15%), Positives = 21/96 (21%), Gaps = 13/96 (13%)

Query: 181 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
           G P                W   +           I   + +                  
Sbjct: 3   GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAH-------------LL 49

Query: 241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
             +  +     L P+  YE KV A    G G  SS 
Sbjct: 50  DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSL 85

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSGIY 58
          +G  V + C+ E   +P   W KDG ++ +  +  I        G L +  V R D+G Y
Sbjct: 10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69

Query: 59 SCTATNVHGMDESK 72
           C   +    + S+
Sbjct: 70 WCQVEDGGETEISQ 83

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           P K+T++  + ++L CS    E  D+ ++     V+  +     +   +     G L + 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI---GFLSLK 59

Query: 148 NASFADAGEYECVVKSTVGK-ISTKTTVIVEG 178
           +   +DAG Y C V+      IS    + VEG
Sbjct: 60  SVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  + +     T++ + W              YKV    +  +          +G T  
Sbjct: 3   APKNLRVGSRTATSLDLEWDNSEA-----EAQEYKVVYSTLAGEQYHEVLVPKGIGPTTK 57

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
             + DL PG  Y + + A  N      ++
Sbjct: 58  TTLTDLVPGTEYGVGISAVMNSKQSIPAT 86

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++V     TS  ++W +   +      YK++  T     +  V          + T 
Sbjct: 4   PKNLRVGSRTATSLDLEWDN---SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT- 59

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                + + LVP + Y   + A        P++ +
Sbjct: 60  -----LTD-LVPGTEYGVGISAVMNSKQSIPATMN 88

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED-NPEETAVYYLSRTTR 451
           AP+ +      +T++++ W+  E            +++ Y           +        
Sbjct: 3   APKNLRVGSRTATSLDLEWDNSE-------AEAQEYKVVYSTLAGEQYHEVLVPKGIGPT 55

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
               +  L P T+Y V + A  N+ +   + 
Sbjct: 56  TKTTLTDLVPGTEYGVGISAVMNSKQSIPAT 86

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 2   AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----------RKIFENGNLLISPVS 51
           A E  +  I  + +  P P   W  +G+++                +   +G L ++  +
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIVLHGP 81
             ++G Y+  A N  G   +      +  P
Sbjct: 72  HVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 136 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           N  +  G L +   +  + G Y  +  +  G+ S          P
Sbjct: 57  NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 4/100 (4%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           G       + V +V  +S  + W            + +       ST       ++ +E+
Sbjct: 2   GSRPRLSQLSVTDVTTSSLRLNWEA---PPGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 58

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                R  A + + L   + Y   +         +    +
Sbjct: 59  MVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQGT 97

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 9/94 (9%), Positives = 24/94 (25%), Gaps = 1/94 (1%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV-RVWEVDQDMSRANDTIIPVGNTL 554
             S + +  +  +++ + W     +F+   +                     ++  G   
Sbjct: 6   RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRH 65

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
            A + DL  G  Y + +                 
Sbjct: 66  SAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTAR 99

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 8/80 (10%), Positives = 25/80 (31%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
            ++++ + W       ++   R         +           +   TR+ A++  L+  
Sbjct: 16  TTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSG 75

Query: 463 TKYYVKVMAYNNAGEGPESE 482
           T Y + +       +    +
Sbjct: 76  TLYSLTLYGLRGPHKADSIQ 95

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 4  EGGNVTIFC------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 57
            G+  + C        E    PK  W KD   +             L++  V+    G 
Sbjct: 13 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN 72

Query: 58 YSCTATNVHGMDESKGRLIV 77
          Y+C A+  +   +     ++
Sbjct: 73 YTCHASYTYLGKQYPITRVI 92

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           +P G+      + +  V W             + G+RI++  E          +  +  +
Sbjct: 3   SPTGIDFSDITANSFTVHWIAPR-------ATITGYRIRHHPEHFSGRPREDRVPHSRNS 55

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479
              +  L P T+Y V ++A N   E P
Sbjct: 56  IT-LTNLTPGTEYVVSIVALNGREESP 81

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 12/93 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P G+   ++   S T+ W         IT Y+I       S           +E      
Sbjct: 4   PTGIDFSDITANSFTVHWIA---PRATITGYRIRHHPEHFSGRP--------REDRVPHS 52

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
           R   ++ N L P + Y   ++A N         
Sbjct: 53  RNSITLTN-LTPGTEYVVSIVALNGREESPLLI 84

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ +    I   +  V W           I GY++R            D +    +   
Sbjct: 3   SPTGIDFSDITANSFTVHWIA-----PRATITGYRIRHHPEHFSGRPREDRV--PHSRNS 55

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDG 580
             + +L+PG  Y + ++A +   + 
Sbjct: 56  ITLTNLTPGTEYVVSIVALNGREES 80

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P G+   +V   S  I W         ++ Y++   +  +            ++     G
Sbjct: 5   PKGLAFTDVDVDSIKIAWES---PQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQG 61

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
                    L P S Y   V+A ++    +P   +     PA
Sbjct: 62  ---------LRPGSEYTVSVVALHDDMESQPLIGTQSTAIPA 94

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+G+     +  +I + W   +          +      +         ++       +
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQ--------GQVSRYRVTYSSPEDGIHELFPAPDGEED 55

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
            A + GL+P ++Y V V+A ++  E     
Sbjct: 56  TAELQGLRPGSEYTVSVVALHDDMESQPLI 85

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  +    ++  ++ + W           +  Y+V       +         P G    
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQG-----QVSRYRVTYS--SPEDGIHELFPAPDGEEDT 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           A++  L PG  Y + V+A  +  + +      +
Sbjct: 57  AELQGLRPGSEYTVSVVALHDDMESQPLIGTQS 89

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
             T + VTW       + I+G  + +R     +       +     T R  A++V L+  
Sbjct: 28  TPTTVQVTWTVDRQ-PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTER-SAVLVNLKKG 85

Query: 463 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
             Y +KV  Y N  +G +SE    RT  ++   P S 
Sbjct: 86  VTYEIKVRPYFNEFQGMDSESKTVRTTEESG--PSSG 120

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 5e-08
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 490 RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
           ++         +   + PTTV VTW         + I GY+V   +     + ++   + 
Sbjct: 12  KELGDVLVRLHNPVVLTPTTVQVTWTVDRQP---QFIQGYRVMYRQTSGLQATSSWQNLD 68

Query: 550 V--GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 594
                   A +V+L  G  Y ++V  + N   G  S    T +  EE
Sbjct: 69  AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSES-KTVRTTEE 114

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 187 QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 246
             V +  T+  + WT        I  Y    R  +  T    +         +    + A
Sbjct: 23  NPVVLTPTTVQVTWTVDRQPQ-FIQGY----RVMYRQTSGLQATSSWQNLDAKVPTERSA 77

Query: 247 SIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 290
            + N L    TYE KV        G  S       T    P   
Sbjct: 78  VLVN-LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV-VRIPSEFYYTEY 362
           + ++W       Q      Y++ +R+ +  +  S        V       + +      Y
Sbjct: 32  VQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTY 88

Query: 363 EVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQG 396
           E+KV+   +   G +SE  T+ + E+       G
Sbjct: 89  EIKVRPYFNEFQGMDSESKTVRTTEESG--PSSG 120

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 32/107 (29%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIG-----------------------------SG 34
            G  + +       P P  +W+K                                   + 
Sbjct: 23  AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82

Query: 35  GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
           GR ++    +     +    ++D G+Y+ T  N  G D+    + V+
Sbjct: 83  GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 24/115 (20%)

Query: 86  QLPPKITIAAHRNLQLRCSA------------HTEELLDVAYIWTHNGVRIGNMDLNELE 133
           ++P  I + A   L+L                   +          +           + 
Sbjct: 14  RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73

Query: 134 TPNINIDGG------------LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 176
              +  +              +  +  A   D G Y   VK+ VG+     TV V
Sbjct: 74  DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 59
                VT+ C   A P   + WK +G  +  G   +        ++ +PV   D+G Y 
Sbjct: 19 GSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78

Query: 60 CTATNVHGMDESK 72
          C ATN  G   S+
Sbjct: 79 CVATNARGTVVSR 91

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 4  EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           G +VT  C  ++ +P    VW +  N       R +  NG L I  V   D+G Y CT 
Sbjct: 16 PGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMDFNGILTIRNVQPSDAGTYVCTG 73

Query: 63 TNVHGMDESKGRLIV 77
          +N+  MD+    L V
Sbjct: 74 SNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 86  QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 145
           +     ++    ++   C+A ++           +         N           G+L 
Sbjct: 7   EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH---------NGKLPSRAMDFNGILT 57

Query: 146 ITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
           I N   +DAG Y C   +         T+ V+
Sbjct: 58  IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P  PG + V      +  + W++       + ++   A   W+              ++ 
Sbjct: 2   PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                  +    L    +Y  +V A  +      S  SP
Sbjct: 62  S---LRIAAST-LKSGISYRARVRAWAQAYNTTWSEWSP 96

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIG-YKVRVWEVDQDMSRANDTIIPVGNTL 554
            P  + +      T+ +TW    P          Y V +W  +         +  +  +L
Sbjct: 4   APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSL 63

Query: 555 DADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITF 589
                 L  G  Y  RV A++   +   S  SP+  +
Sbjct: 64  RIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKW 100

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 14/90 (15%), Positives = 25/90 (27%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +      S  + +TW+        +   L      + + D  +             
Sbjct: 4   APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSL 63

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                 L+    Y  +V A+  A     SE
Sbjct: 64  RIAASTLKSGISYRARVRAWAQAYNTTWSE 93

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 1  YAGEGGNVTIFC------------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 48
          +   G  + +                E        +K+        G  +I  NG+L I 
Sbjct: 6  WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 65

Query: 49 PVSRDDSGIYSCTATNVHGMDESKGRLIV 77
           ++RDDSG Y+ T  + +G       L +
Sbjct: 66 NLTRDDSGTYNVTVYSTNGTRILNKALDL 94

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
             T++ ++W+             + +    + E         +    +++ A I GL+P 
Sbjct: 9   TPTSLLISWDAPA--------VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPG 60

Query: 463 TKYYVKVMAYNNAGEGPESERYLERTYR 490
             Y + V A    G+ P S + +   YR
Sbjct: 61  VDYTITVYAVTGRGDSPASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 500 VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV 559
           + +    PT++ ++W           +  Y++   E   +      T+   G+   A I 
Sbjct: 3   LEVVAATPTSLLISW-----DAPAVTVRYYRITYGETGGNSPVQEFTV--PGSKSTATIS 55

Query: 560 DLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
            L PG  Y + V A +  GD   SS  I+
Sbjct: 56  GLKPGVDYTITVYAVTGRGDSPASSKPIS 84

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 12/92 (13%)

Query: 186 VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 245
           ++VV    TS  I W         + +Y+I       ++          K     +G   
Sbjct: 3   LEVVAATPTSLLISWDA---PAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISG--- 56

Query: 246 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                 L P   Y   V A    G    SS  
Sbjct: 57  ------LKPGVDYTITVYAVTGRGDSPASSKP 82

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
           G    S  V + + +  P   P G        T + + W  +          + G+++ Y
Sbjct: 1   GSSGSSGTVNVTTKKTPPS-QPPGNVVWNATDTKVLLNWEQV--KAMENESEVTGYKVFY 57

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
                     +          +  + L     Y ++V A  + G+G  SE   +    + 
Sbjct: 58  RTSSQNNVQVLNT-----NKTSAELVLPIKEDYIIEVKATTDGGDGTSSE---QIRIPRI 109

Query: 493 PQKPPSA 499
               PS+
Sbjct: 110 TSSGPSS 116

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-06
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 535
           G    S      T +  P +PP    +     T V + W  V     E  + GYKV    
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPG-NVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59

Query: 536 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 593
             Q+  +  +T         +  + L   + Y + V A ++GGDG  S      ++  
Sbjct: 60  SSQNNVQVLNTNKT------SAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITS 111

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 273 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND 332
            SS +    T    P   P            + ++WE +   +  +    YK+F+R  + 
Sbjct: 4   GSSGTVNVTTKKTPP-SQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62

Query: 333 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIF-SAEDMP 390
              Q     +                  +Y ++V+A  D G G  SE + I       P
Sbjct: 63  NNVQVLNTNKT-------SAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 15/113 (13%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 234
           + PP  P G  V     T   + W       N   +T YK+  RT+  +    ++ +   
Sbjct: 15  KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKT- 73

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                       S E VL     Y  +V A  + G G  S         +  P
Sbjct: 74  ------------SAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 10/98 (10%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P  P     +     S  +        G PI HY +  R   +     +        V  
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVML 60

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            +              + YE  V+A N+ G  + +   
Sbjct: 61  KSLD----------WNAEYEVYVVAENQQGKSKAAHFV 88

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFE----------NGNLLISPVSR 52
            G    + C+  + +P  ++ W KDG ++ +  +                G L+  P+S 
Sbjct: 16  IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 75

Query: 53  DDSGIYSCTATNVHGMDESKGRLIV 77
            D+G YSC A N +G   +   + +
Sbjct: 76  SDTGEYSCEARNGYGTPMTSNAVRM 100

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 61
          EG +  I C+  ++  P  +WK  G   I+    R  +  N  L I  + + D G Y C 
Sbjct: 15 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 74

Query: 62 ATNVHGMDESKGRLIV 77
             +   + +   + V
Sbjct: 75 GRILARGEINFKDIQV 90

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P ++ +  +     +++W     S   E  + ++ R          A   +        
Sbjct: 5   APISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAP-LLTLKQKQEW 63

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRM---SSPAITFQ 590
             +  L+P  +Y  +V      G+       S  + F+
Sbjct: 64  ICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  +QVV V      I W     +     H +  ART      +  +  +  K       
Sbjct: 6   PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLK-----QK 60

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 276
           ++   +E  L P + YEF+V      G     SP
Sbjct: 61  QEWICLET-LTPDTQYEFQVRVKPLQGEFTTWSP 93

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR 451
           +AP  +      +   N++W   +    +   R +    +     +  E A     +  +
Sbjct: 4   MAPISLQVVHVETHRCNISWEISQ--ASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 452 NWALIVGLQPDTKYYVKVMAYNNAG-EGPESE 482
            W  +  L PDT+Y  +V      G     S 
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSP 93

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 181 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 240
           G P G+   ++ + SAT+ WT        +  Y++        T   V+           
Sbjct: 2   GSPKGISFSDITENSATVSWTP---PRSRVDSYRVSYVPITGGTPNVVTVD--------- 49

Query: 241 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
             +    +   LVP   Y   +I+       EP S
Sbjct: 50  GSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPIS 83

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           +P+G+        +  V+W P        R R+  +R+ Y          V      ++ 
Sbjct: 3   SPKGISFSDITENSATVSWTPP-------RSRVDSYRVSYVPITGGTPNVVTV--DGSKT 53

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479
              +V L P   Y V +++     E  
Sbjct: 54  RTKLVKLVPGVDYNVNIISVKGFEESE 80

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  +    I   +  V+W     +     +  Y+V    +        + +   G+   
Sbjct: 3   SPKGISFSDITENSATVSW-----TPPRSRVDSYRVSYVPI---TGGTPNVVTVDGSKTR 54

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDG 580
             +V L PG  Y++ +++     + 
Sbjct: 55  TKLVKLVPGVDYNVNIISVKGFEES 79

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 4   EGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKI-----------FENGNLLISPVS 51
            G    + C+  + +P  ++ W KDG  + +   +K             ++G+L+  PV+
Sbjct: 16  IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 75

Query: 52  RDDSGIYSCTATNVHGMDESKGRLIV 77
             DSG Y C A N +G         +
Sbjct: 76  AFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 13/102 (12%)

Query: 88  PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-----LNELETP 135
           PP         ++       L CS   +      Y W  +G+ +   D          + 
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSE-HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 136 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
            I+   G L     +  D+GEY C  ++  G         ++
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWK-KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
           G +VT+ C          V         GS   R       LL+  V   DSG YSC  
Sbjct: 20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR 79

Query: 63 TN 64
            
Sbjct: 80 AG 81

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 7/117 (5%)

Query: 177 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
              PG P  V++   +     + W    +    I  Y             N S+ V  + 
Sbjct: 5   SSGPGAPSTVRI-SKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRI 63

Query: 237 VD------RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
                     T  + A+            F++ A NE GYG  +            P
Sbjct: 64  YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSGP 120

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 13/107 (12%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIK----------YWKEDNPEETAVYYLSRTTRN 452
           N   I+++W P      NI        I+                             + 
Sbjct: 19  NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQL 78

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 499
               +          ++ A N  G GP ++    R  +   +  PS+
Sbjct: 79  ANAHIDYTSRPAIVFRISAKNEKGYGPATQ---IRWLQGNSKSGPSS 122

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 14/122 (11%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA-------- 543
           +    P A     I+     +   +  P+     I+ Y   +      M           
Sbjct: 3   SGSSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMR 62

Query: 544 -----NDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 598
                  +       L    +D +       R+ A +  G G  ++     Q   +    
Sbjct: 63  IYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG-PATQIRWLQGNSKSGPS 121

Query: 599 SG 600
           SG
Sbjct: 122 SG 123

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 7/81 (8%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNI---IGSGGRRKIFENGN---LLISPVSRDDSGI 57
           G   T  C+              G           +            +   ++ D+G 
Sbjct: 15 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 74

Query: 58 YSCTATNVHGMDESK-GRLIV 77
          Y C      G+  S    L+V
Sbjct: 75 YRCMIRTEGGVGISNYAELVV 95

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +         + VTW P           L    ++Y    N E+ A   +S  + N
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPP------SIDLTNFLVRYSPVKNEEDVAELSIS-PSDN 55

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479
             ++  L P T+Y V V +     E  
Sbjct: 56  AVVLTNLLPGTEYVVSVSSVYEQHEST 82

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PP+ +    I P T+ VTW           +  + VR   V  +   A  +I    +   
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPSI----DLTNFLVRYSPVKNEEDVAELSI--SPSDNA 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDG 580
             + +L PG  Y + V +     + 
Sbjct: 57  VVLTNLLPGTEYVVSVSSVYEQHES 81

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 13/99 (13%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           PP  P  ++   +   +  + W         +T++ +      N                
Sbjct: 2   PP--PTDLRFTNIGPDTMRVTWA--PPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAV 57

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
             T            P + Y   V +  E     P    
Sbjct: 58  VLTNLL---------PGTEYVVSVSSVYEQHESTPLRGR 87

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +       T+++  W P            +                         +
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPN--------VQLTGYRVRVTPKEKTGPMKEINLAPDSS 53

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
             ++ GL   TKY V V A  +      ++
Sbjct: 54  SVVVSGLMVATKYEVSVYALKDTLTSRPAQ 83

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 14/99 (14%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P   P  ++  +V  TS + QWT                         N++       V 
Sbjct: 1   PA--PTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVS 58

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                        L+  + YE  V A  +     P+   
Sbjct: 59  G------------LMVATKYEVSVYALKDTLTSRPAQGV 85

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P+ +    + PT++   W            +          +      +  +   ++  
Sbjct: 2   APTDLKFTQVTPTSLSAQWTP------PNVQLTGYRVRVTPKEKTGPMKEINLA-PDSSS 54

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             +  L    +Y + V A  +    R +   +T
Sbjct: 55  VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVT 87

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 16/91 (17%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-------------ENGNLLI 47
          Y    GNVT    P   P  + +WKK  + +      +                +G+L I
Sbjct: 6  YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 48 SPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
            ++  D   Y   + N+      K  L VL
Sbjct: 65 YNLTSSDEDEYEMESPNITD--TMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 90  KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN----INIDGGLLE 145
           +I    + N+     ++      +          + N +     +      ++   G L 
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 146 ITNASFADAGEYECVVKSTVGKISTKTTVI 175
           I N + +D  EYE    +    +     V+
Sbjct: 64  IYNLTSSDEDEYEMESPNITDTMKFFLYVL 93

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 4/118 (3%)

Query: 279 QYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS 337
           +++T    P   P  +    G     + +SW P         N      +      + Q 
Sbjct: 2   EFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYG--VYAKGQR 59

Query: 338 ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIFSAEDMPQVAPQ 395
                +       V +          V V+ ++  G   +S V  +     +P   P 
Sbjct: 60  VAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPP-TPH 116

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 487 RTYRKAPQKPPSAVHIK-GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 545
            T    P  PP  V ++ G+ P T+ V+WR    +             + V     R  +
Sbjct: 4   STLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTG-YGVYAKGQRVAE 62

Query: 546 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 587
            I P  ++   ++V L   +   + V   S  G+   S+ A 
Sbjct: 63  VIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAA 104

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 22/118 (18%), Positives = 31/118 (26%), Gaps = 3/118 (2%)

Query: 381 VTIFSAEDMPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE 439
           V   +    P   PQ V    G     I V+W P  L    +      +   Y      +
Sbjct: 1   VEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNG--ANVTGYGVYAKGQ 58

Query: 440 ETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 497
             A             +V L+      V V   +  GE  +S           P  P 
Sbjct: 59  RVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPH 116

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 8/101 (7%)

Query: 178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
               L  G  VV        + W     +       ++  +       + +  H+     
Sbjct: 6   MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS-- 63

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                + +  +   L     Y  ++        G  S  SP
Sbjct: 64  -----KDQFEL-CGLHQAPVYTLQMRCIRSSLPGFWSPWSP 98

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 5/100 (5%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
            Q       +    P  +     +      E      ++R     +  +      +P   
Sbjct: 7   LQALDIGPDVVSHQPGCL--WLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSK 64

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQ 590
               ++  L     Y +++    +   G  S  SP +  +
Sbjct: 65  D-QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDS 55
              +  I    +  PKP   W  +G I+          +          L +   +  ++
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 56  GIYSCTATNVHGMDESKGRLIVLHGPS 82
           G Y+  A N +G DE +     +  P 
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 86  QLPPKITI----AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 141
              P IT      +  +  +  +        + + +    +        ++   N     
Sbjct: 2   HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 142 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
           G L++ N +  + G+Y  + K+  GK   + +    G PG
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 15/89 (16%)

Query: 4   EGGNVTIFCNPEAAP---KPKFVWKKDGN------------IIGSGGRRKIFENGNLLIS 48
            GG++T       A     P   W K               +  S  R        L I+
Sbjct: 18  VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIV 77
                 +G Y C  +     D S   L V
Sbjct: 78  DAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI-------GNMDLNELETPNINID 140
           P    +    ++          LL    +    G  +        ++ L++       + 
Sbjct: 11  PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
              L IT+A  A  G Y C V +      +   + V 
Sbjct: 71  LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 9/97 (9%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P   P  + +     T   +  +   +    IT Y+I           ++ E V   +  
Sbjct: 1   PLSPPTNLHLEANPDTG-VLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ-- 57

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
                   + +N L P   Y   V    +     P S
Sbjct: 58  -----SSCTFDN-LSPGLEYNVSVYTVKDDKESVPIS 88

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 552
           P  PP+ +H++    T V +T  +         I GY++     +     + + ++   +
Sbjct: 1   PLSPPTNLHLEANPDTGV-LTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVH-AD 56

Query: 553 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
                  +LSPG  Y++ V    +  +    S  I 
Sbjct: 57  QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII 92

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 390 PQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 448
           P   P  +      ++  + V+W             + G+RI     +  +  ++  +  
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERST------TPDITGYRITTTPTNGQQGNSLEEVVH 54

Query: 449 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGP 479
             ++      L P  +Y V V    +  E  
Sbjct: 55  ADQSSCTFDNLSPGLEYNVSVYTVKDDKESV 85

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 12/93 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++ +     S  + W         IT Y I      +            + V R   
Sbjct: 4   PSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPR---------EVVPRPRP 51

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
               +    L P + Y   VIA       EP  
Sbjct: 52  GVTEATITGLEPGTEYTIYVIALKNNQKSEPLI 84

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            PS +      P ++ V+W+          I GY ++  +                   +
Sbjct: 3   APSNLRFLATTPNSLLVSWQPPRA-----RITGYIIKYEKPGSPPREVVPRP--RPGVTE 55

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
           A I  L PG  Y + V+A  N      S P I 
Sbjct: 56  ATITGLEPGTEYTIYVIALKNNQ---KSEPLIG 85

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +        ++ V+W P            I   I  +++       V    R    
Sbjct: 3   APSNLRFLATTPNSLLVSWQPPR--------ARITGYIIKYEKPGSPPREVVPRPRPGVT 54

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGP 479
            A I GL+P T+Y + V+A  N  +  
Sbjct: 55  EATITGLEPGTEYTIYVIALKNNQKSE 81

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 9e-07
 Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
             ++   +         + +TW      R    G  + + +    +D      V      
Sbjct: 2   ESLSGLSLKLVKKEPRQLELTWAGS---RPRNPGGNLSYELHVLNQDEEWHQMVLEPRVL 58

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 488
                 +  LQPDT Y V+V      G GP S  +  RT
Sbjct: 59  ------LTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 91

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 13/105 (12%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
                  +++V+       + W               +   N +  W  +          
Sbjct: 2   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLE------- 54

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
                    +   L P +TY  +V     LG G  S       +P
Sbjct: 55  -----PRVLLTK-LQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 93

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           A      ++ +    P  + +TW    P       + Y++ V   D++          + 
Sbjct: 1   AESLSGLSLKLVKKEPRQLELTWAGSRPR-NPGGNLSYELHVLNQDEEWH-------QMV 52

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
                 +  L P   Y +RV   +  G G   SP   F+
Sbjct: 53  LEPRVLLTKLQPDTTYIVRVRTLTPLGPG-PFSPDHEFR 90

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 304 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 363
           L ++W    R +    N+ Y++    +++   Q           +           T Y 
Sbjct: 19  LELTWAG-SRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ--------PDTTYI 69

Query: 364 VKVQAINDVGPGPESEVVTI 383
           V+V+ +  +GPGP S     
Sbjct: 70  VRVRTLTPLGPGPFSPDHEF 89

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 6/119 (5%)

Query: 169 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 228
           S+        P   P    V +V   S  + W       R     + +  +         
Sbjct: 5   SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64

Query: 229 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           S  VI          +       L P + Y+F++   +  G  E S       T    P
Sbjct: 65  SYGVIYTGYATRHVVEG------LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 12/127 (9%)

Query: 373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY 432
             G E   V   S    P V             +I + W+  +  +              
Sbjct: 5   SSGMEPHKVVPLSKPHPPVVGK-------VTHHSIELYWDLEQKEKRQGPQEQWLRFSIE 57

Query: 433 WKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 492
            ++       V Y    TR+   + GL+P T Y  ++   + +GE   S      T    
Sbjct: 58  EEDPKMHSYGVIYTGYATRHV--VEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT---T 112

Query: 493 PQKPPSA 499
            +  PS+
Sbjct: 113 RESGPSS 119

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 547
            ++  P   P    +  +   ++ + W  +    + +      +R    ++D    +  +
Sbjct: 10  PHKVVPLSKPHPPVVGKVTHHSIELYW-DLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV 68

Query: 548 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 600
           I  G      +  L P   Y  R+   S  G+    SP ++     E    SG
Sbjct: 69  IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE-YSPVVSVATTRESGPSSG 120

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P  +P  +++ E  +T+  + W+  +     +           +S        + G    
Sbjct: 6   PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR 65

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
            +           L   + YEFK+ + +     E S+
Sbjct: 66  SFK-------IAPLETATMYEFKLQSFSAASASEFSA 95

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 2/94 (2%)

Query: 491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV 550
             P   P  + I+  + T V + W   S + E      Y                     
Sbjct: 4   LDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGA- 62

Query: 551 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
            +     I  L     Y  ++ +FS       S+
Sbjct: 63  -HARSFKIAPLETATMYEFKLQSFSAASASEFSA 95

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 449
           P   P+ +    ++ TA+ + W+      +     + G+   Y    +  E     +   
Sbjct: 6   PMPVPELLEIEEYSETAVVLHWSLA---SDADEHLITGYYAYYRPSSSAGEYFKATIEGA 62

Query: 450 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 481
                 I  L+  T Y  K+ +++ A     S
Sbjct: 63  HARSFKIAPLETATMYEFKLQSFSAASASEFS 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 2  AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSG 56
          A  G    I+C   + P     + K+G  +      +I          LL      +D G
Sbjct: 15 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEG 74

Query: 57 IYSCTATNVHGMDESK-GRLIVL 78
          +Y+C   N  G  +    +L V+
Sbjct: 75 VYTCEVDNGVGKPQKHSLKLTVV 97

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 12/95 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++V +V  T+A I W         I   ++              +    +       
Sbjct: 5   PSQIEVKDVTDTTALITWFK---PLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGN 61

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            K         P + YE  +I+        P+  +
Sbjct: 62  LK---------PDTEYEVSLISRRGDMSSNPAKET 87

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  +  +    T   +TW              I      +   +              N
Sbjct: 4   APSQIEVKDVTDTTALITWFKPL--------AEIDGIELTYGIKDVPGDRTTIDLTEDEN 55

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              I  L+PDT+Y V +++         ++
Sbjct: 56  QYSIGNLKPDTEYEVSLISRRGDMSSNPAK 85

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            PS + +K +  TT  +TW           I G ++     D    R    +    +   
Sbjct: 4   APSQIEVKDVTDTTALITWFKPLA-----EIDGIELTYGIKDVPGDRTTIDLTE--DENQ 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             I +L P   Y + +++         +    T
Sbjct: 57  YSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 89

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
          E     + C  E   +      K                 + G+L+       D G Y C
Sbjct: 16 ENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC 75

Query: 61 TATNVHGMDESK 72
           A    G+  S+
Sbjct: 76 FAETPAGVASSR 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 5/90 (5%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 147
           P ++    +    L C     +             +  N   +             L   
Sbjct: 9   PAEVLFRENNPTVLECIIEGNDQGVK--YSWKKDGKSYNWQEHNAALRKDEGS---LVFL 63

Query: 148 NASFADAGEYECVVKSTVGKISTKTTVIVE 177
               +D G Y+C  ++  G  S++     +
Sbjct: 64  RPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+ +       T +++ W                     +   + ++  +     +T  
Sbjct: 2   NPKDLEVSDPTETTLSLRWRRPV--------AKFDRYRLTYVSPSGKKNEMEIPVDSTSF 53

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              + GL   T+Y + ++A     +   + 
Sbjct: 54  I--LRGLDAGTEYTISLVAEKGRHKSKPTT 81

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 14/95 (14%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++V +  +T+ +++W            Y++   +          E  I  +   +  
Sbjct: 3   PKDLEVSDPTETTLSLRWRRPVA---KFDRYRLTYVSPSGKKN----EMEIPVDSTSFI- 54

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                    L   + Y   ++A       +P++  
Sbjct: 55  ------LRGLDAGTEYTISLVAEKGRHKSKPTTIK 83

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 9/93 (9%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  + +     TT+ + W            +    R        S   + +    ++  
Sbjct: 2   NPKDLEVSDPTETTLSLRW---------RRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTS 52

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             +  L  G  Y + ++A       + ++   +
Sbjct: 53  FILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 85

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWKKDGN-------IIGSGGRRKIFENGN---LLISPV 50
           +  EG    + C  E+ P                  + GS  R  +  +     L I  +
Sbjct: 13  HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 72

Query: 51  S-RDDSGIYSCTATNVHGMDESKGRLIV 77
           +   D G Y C  T+  G D++   L V
Sbjct: 73  NMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 80  GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 139
           GP   + +     I       L C + +   +     +         +         ++ 
Sbjct: 1   GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 140 DGGL--LEITNASFAD-AGEYECVVKSTVGKISTKTTVIV 176
             G   L I N +     G+Y C   S+ G      T+ V
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 14/95 (14%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  + V    +TS ++ WT  +    PI HY+I    +   +     E  + ++   YT 
Sbjct: 4   PRDLMVTASSETSISLIWTKASG---PIDHYRITFTPSSGISS----EVTVPRDRTSYT- 55

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                    L P + Y   + A         S+  
Sbjct: 56  ------LTDLEPGAEYIISITAERGRQQSLESTVD 84

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           +P+ +     + T+I++ W              I H    +   +   + V      T  
Sbjct: 3   SPRDLMVTASSETSISLIWTKAS--------GPIDHYRITFTPSSGISSEVTVPRDRTSY 54

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +  L+P  +Y + + A     +  ES 
Sbjct: 55  T--LTDLEPGAEYIISITAERGRQQSLEST 82

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  + +   + T++ + W             G            S  +  +    +   
Sbjct: 3   SPRDLMVTASSETSISLIW---------TKASGPIDHYRITFTPSSGISSEVTVPRDRTS 53

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSS 584
             + DL PG  Y + + A         S+
Sbjct: 54  YTLTDLEPGAEYIISITAERGRQQSLEST 82

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 4  EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
          EG  + + C+     P  K  + ++G           F      I   +   SG Y CT 
Sbjct: 14 EGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNF-----SIPQANHSHSGDYHCTG 68

Query: 63 TNVHGMDESKGRLIVLHGPS 82
             + +  SK   I +  P+
Sbjct: 69 NIGYTLYSSKPVTITVQAPA 88

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 13/95 (13%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P   +V +  +T+ TI W         IT +++ A      T    +     +       
Sbjct: 5   PRRARVTDATETTITISWRT---KTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGL 61

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                      P + Y+  +   N+     P    
Sbjct: 62  ----------QPGTDYKIYLYTLNDNARSSPVVID 86

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 9/90 (10%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P+         T I ++W             + G ++     +                
Sbjct: 4   PPRRARVTDATETTITISWRTK-------TETITGFQVDAVPANGQTPIQRTIKPDVRSY 56

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              I GLQP T Y + +   N+        
Sbjct: 57  T--ITGLQPGTDYKIYLYTLNDNARSSPVV 84

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 8/93 (8%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
           PP    +     TT+ ++WR           +              +         +   
Sbjct: 4   PPRRARVTDATETTITISWR-TKTETITGFQVDAV-------PANGQTPIQRTIKPDVRS 55

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             I  L PG  Y + +   ++           +
Sbjct: 56  YTITGLQPGTDYKIYLYTLNDNARSSPVVIDAS 88

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 6e-06
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGRRKIFENGNLLISPVSR 52
           E  ++ + C       P+  WK            +  I      R  F +  +  S V+R
Sbjct: 15  ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR 74

Query: 53  DDSGIYSCTATNVHGMDESKGR--LIVL 78
            D+G Y+C  +   G +  +    L VL
Sbjct: 75  KDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 11/93 (11%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELLDVAYIW---THNGVRIGNMDLNELETPNINIDGGLL 144
              + +  + +++L C+        V + +   +   +   N  +       +      +
Sbjct: 8   QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67

Query: 145 EITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
             ++ +  D GEY C+V    G+   + ++ + 
Sbjct: 68  TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP+ + ++        +TW            R  G+ + +       +  +         
Sbjct: 4   APRDLEAKEVTPRTALLTWTEP-------PVRPAGYLLSFHTPGGQTQEILL---PGGIT 53

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              ++GL P T Y  ++ A       P   
Sbjct: 54  SHQLLGLFPSTSYNARLQAMWGQSLLPPVS 83

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  +  K + P T  +TW    P      ++ +     +           I+  G    
Sbjct: 4   APRDLEAKEVTPRTALLTW-TEPPVRPAGYLLSFHTPGGQ--------TQEILLPGGITS 54

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             ++ L P   Y+ R+ A          S + T
Sbjct: 55  HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 87

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  ++  EV   +A + W                   ++++      E ++   +  +  
Sbjct: 5   PRDLEAKEVTPRTALLTW-------TEPPVRPAGYLLSFHTPGGQTQEILLPGGITSHQL 57

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
                    L P ++Y  ++ A        P S S
Sbjct: 58  LG-------LFPSTSYNARLQAMWGQSLLPPVSTS 85

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 88  PPKITIAAHRNLQLRCSAHTEELL---DVAYIWTHNGV----RIGNMDLNELETPNINID 140
           P   T+    ++        E+LL    + +              ++ L E    +  + 
Sbjct: 7   PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 66

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 183
              ++I  A    AG Y C V       S    + V    G  
Sbjct: 67  TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 9e-06
 Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 19/103 (18%)

Query: 4   EGGNVTIFCNPEAAP---KPKFVWKKDGNII------------GSGGRRKIFENGNLLIS 48
            G ++T     +A     KP   W K   +              +  R        + I 
Sbjct: 14  VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 73

Query: 49  PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI 91
               + +G Y C  T     D     L V           P I
Sbjct: 74  KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST----GTTPNI 112

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSGIY 58
           G  V + C   +       W K+G  I  G + +       +   L+I   ++ D+  Y
Sbjct: 14 CGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEY 72

Query: 59 SCTATNVHGMDESKGRLIV 77
          S   T      +S  +L V
Sbjct: 73 SVMTTG----GQSSAKLSV 87

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 7/82 (8%)

Query: 7   NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 59
              I       P P   W  +G  +       +          G LL +  +  ++G Y+
Sbjct: 19  EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 78

Query: 60  CTATNVHGMDESKGRLIVLHGP 81
             A N  G          L  P
Sbjct: 79  LIAKNPLGTANQTINGHFLKEP 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 5/100 (5%)

Query: 86  QLPPKIT----IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 141
             PP++             +           + ++     +R   +  +        I  
Sbjct: 3   YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII-HVEYYQEGEISE 61

Query: 142 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 181
           G L     +  + G Y  + K+ +G  +          P 
Sbjct: 62  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 101

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 20/100 (20%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
            P  P  +       +S T+ WT    N   +T Y +   T   +T    +  + G    
Sbjct: 3   APTAPTNLASTAQTTSSITLSWTASTDNV-GVTGYDVYNGTALATTVTGTTATISG---- 57

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                        L   ++Y F V A +    G  S+ S 
Sbjct: 58  -------------LAADTSYTFTVKAKDA--AGNVSAASN 82

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 14/99 (14%)

Query: 492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 551
           AP   P+ +       +++ ++W   +   +   + GY V               +    
Sbjct: 3   APT-APTNLASTAQTTSSITLSWTAST---DNVGVTGYDVYNG----------TALATTV 48

Query: 552 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 590
               A I  L+    Y   V A    G+   +S A++ +
Sbjct: 49  TGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVK 87

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
           AP  + S    +++I ++W             + G+ +                +  T  
Sbjct: 6   APTNLASTAQTTSSITLSWTAST-----DNVGVTGYDVYNGT---------ALATTVTGT 51

Query: 453 WALIVGLQPDTKYYVKVMAYNNAG-EGPESERYLERT 488
            A I GL  DT Y   V A + AG     S     +T
Sbjct: 52  TATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 4   EGGNVTIFCNPEAAPKPKFVW-----------KKDGNIIGSGGRRKIFENGNLLISPVSR 52
           E   V + C       P+  W             +  I  S   R  F    +    V+R
Sbjct: 18  ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77

Query: 53  DDSGIYSCTATNVHGMDESKGRLIVL 78
           +D+G Y+C  +   G    + ++ ++
Sbjct: 78  EDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  V + E      +      A     I+ Y +  R   +   +         +     G
Sbjct: 3   PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRW---------KEATIPG 53

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
              +     L P   YE ++I+  + G+ E + 
Sbjct: 54  HLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR 86

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  V I            ++   + +   I  Y +R    +        TI   G+   
Sbjct: 2   GPVEVFITETPSQPNSHPIQW--NAPQPSHISKYILRWRPKNSVGRWKEATIP--GHLNS 57

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             I  L PG  Y  ++++    G   ++    T
Sbjct: 58  YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFT 90

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 13/78 (16%), Positives = 22/78 (28%)

Query: 405 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK 464
           T      N   +     +   I   I  W+  N              N   I GL+P   
Sbjct: 9   TETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVV 68

Query: 465 YYVKVMAYNNAGEGPESE 482
           Y  ++++    G    + 
Sbjct: 69  YEGQLISIQQYGHQEVTR 86

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 4   EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------------LLIS 48
            G  + + CN          WK +G++I         +  +               L IS
Sbjct: 16  LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 75

Query: 49  PVSRDDSGI-YSCTATNVHGMDESKGRLIV 77
            +        ++C A N HG+D +  +LI 
Sbjct: 76  EIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 496 PPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT 553
           PP+ + +  +  NP  + VTW+           + +++R             T +     
Sbjct: 4   PPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT---FTTWMVKDLQ 60

Query: 554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAIT 588
               I D   G R+ +++ A    G G  S  SP   
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAM 97

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 12/102 (11%)

Query: 180 PGLPGGVQVVEVHKTSATI--QWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 236
           P  P  + V  V +    +   W D    N         +      S  F        + 
Sbjct: 2   PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQH 61

Query: 237 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                                +  ++ A  E G GE S  SP
Sbjct: 62  HCVIHD---------AWSGLRHVVQLRAQEEFGQGEWSEWSP 94

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
           N   ++VTW        N     +   ++Y  E +   T             +I      
Sbjct: 16  NPRWLSVTWQDPH--SWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHH--CVIHDAWSG 71

Query: 463 TKYYVKVMAYNNAGEGPESE 482
            ++ V++ A    G+G  SE
Sbjct: 72  LRHVVQLRAQEEFGQGEWSE 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 60
           G    +  +   AP P   W    +         +    +   +      R DSG Y  
Sbjct: 16 AGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKL 75

Query: 61 TATNVHGMDESKGRLIV 77
             N  G DE+   +IV
Sbjct: 76 KVKNELGEDEAIFEVIV 92

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          E  +VT+ C                ++  +        N  L I P+ R+D+G Y C  +
Sbjct: 17 ELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 76

Query: 64 NVHGMDESKG-RLIVLHGPS 82
          N   +  S   +L ++  PS
Sbjct: 77 NPVSVRRSNSIKLDIIFDPS 96

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 8/99 (8%), Positives = 23/99 (23%), Gaps = 8/99 (8%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
             +    +          + W             ++  +       + +   +  + +  
Sbjct: 7   RTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQY 66

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                       L+P + Y  ++        G  S  SP
Sbjct: 67  EL--------CGLLPATAYTLQIRCIRWPLPGHWSDWSP 97

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 10/102 (9%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT 553
           +    +          + ++W                    +  +        +      
Sbjct: 7   RTMDPSPEAAPPQAGCLQLSW-EPWQPGLHINQKCELRHKPQRGEASWALVGPLPL--EA 63

Query: 554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGE 593
           L  ++  L P   Y +++        G  S  SP++  +  E
Sbjct: 64  LQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTE 105

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 19/81 (23%), Gaps = 4/81 (4%)

Query: 2  AGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGI 57
          +         C       K    W KD +          R       L   P   +DSG 
Sbjct: 14 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH 73

Query: 58 YSCTATNVHGMDESKGRLIVL 78
          Y C   N       K     +
Sbjct: 74 YYCVVRNSSYCLRIKISAKFV 94

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 10/75 (13%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          E    T  C     P P+    KDG           F         V+RD  G Y C A 
Sbjct: 18 ENSQQTPMCQAWGNPLPELKCLKDGT----------FPLPIGESVTVTRDLEGTYLCRAR 67

Query: 64 NVHGMDESKGRLIVL 78
          +  G    +  + VL
Sbjct: 68 STQGEVTREVTVNVL 82

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 7/106 (6%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P  L   V+  E  K    I+W+           + ++             E     +  
Sbjct: 6   PLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQT 65

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 284
            +           L P   Y  +V    + GY    SP+     P+
Sbjct: 66  EFKILS-------LHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPS 104

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 452
            P  +  R  + T   V W P            +   +  +     E     +  +   +
Sbjct: 6   GPTQILVRDVSDTVAFVEWTPPR--------AKVDFILLKYGLVGGEGGKTTFRLQPPLS 57

Query: 453 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
              +  L+P ++Y V + A     E   S 
Sbjct: 58  QYSVQALRPGSRYEVSISAVRGTNESDASS 87

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 12/93 (12%)

Query: 183 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 242
           P  + V +V  T A ++WT        +    +                           
Sbjct: 7   PTQILVRDVSDTVAFVEWTP---PRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQA 63

Query: 243 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 275
            +         P S YE  + A       + SS
Sbjct: 64  LR---------PGSRYEVSISAVRGTNESDASS 87

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 30/113 (26%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW--------- 453
           +   I + W P           L+G  + Y +      T          N          
Sbjct: 14  SFDKILLRWEPYW---PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPP 70

Query: 454 -------------ALIVGLQPDTKYYVKVMAYNNAGE-----GPESERYLERT 488
                         L+ GL+P T+Y + V       +     G +S+    +T
Sbjct: 71  LRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT 123

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 26/120 (21%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG---- 551
                     +   + + W    P  +   ++G+ +   E         D     G    
Sbjct: 4   ELLKFSYIRTSFDKILLRWEPYWPP-DFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSW 62

Query: 552 -----------------NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS----SPAITFQ 590
                            N     +  L P  +Y + V       D R +    S  I  Q
Sbjct: 63  TVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 238
           P      +  V++  +S  ++WT    N   I  Y+I            + E  +   V 
Sbjct: 7   PQ--LTDLSFVDITDSSIGLRWTP--LNSSTIIGYRITVVAAGE--GIPIFEDFVDSSVG 60

Query: 239 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
            YT          L P   Y+  VI     G   P++ +
Sbjct: 61  YYT-------VTGLEPGIDYDISVITLINGGESAPTTLT 92

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 490 RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 549
           R +     + +    I  +++ + W           IIGY++ V    + +    D +  
Sbjct: 2   RGSEVPQLTDLSFVDITDSSIGLRWTP----LNSSTIIGYRITVVAAGEGIPIFEDFV-- 55

Query: 550 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
             +     +  L PG  Y + V+   NGG+   ++    
Sbjct: 56  DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQ 94

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 15/109 (13%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGAT----NGRPITHYKIIARTNWNSTWFNVSEHVIG 234
           P  L   V+ ++  KT   ++W+         G     Y+I  +      W         
Sbjct: 6   PRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEI------- 58

Query: 235 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
                +TG +       L P   Y  +     + GY    S       P
Sbjct: 59  ----HFTGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEMP 103

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
           GG   + C+ ++     F   ++G +     +  +    NLLI  +S  DSG+Y C + 
Sbjct: 11 HGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE 70

Query: 64 NVHGMDESKGRLIVL 78
                     +   
Sbjct: 71 ERVKNKTVFQVVAKH 85

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 15/97 (15%)

Query: 1   YAGEGGNVTIFCNPEAAPKPKFVWK----------KDGNIIGSGGRRKIFENGNLLISPV 50
           +A  G    I C   + P P  +              G         +      L IS +
Sbjct: 17  HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 76

Query: 51  SRD-DSGIYSCTATNVHGMDESKGRLIV----LHGPS 82
            R     IY+CTA N  G D    RL      + GPS
Sbjct: 77  VRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
            P  P  +  VE + ++A +Q+ +  AT G PI  YK   R      W +          
Sbjct: 2   TPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA----- 55

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 283
            +    +       L P +TY  ++ A N  G GE S+ S     P
Sbjct: 56  -KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 100

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 40  FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 77
                L I  V   D G Y+C   +    +E+   L V
Sbjct: 78  EGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 144 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 180
           L I N  F+D G Y C  +    +      + VE P 
Sbjct: 83  LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 63
          EG  + + C+         V             +  +EN N+ I+  + +DSG Y CT  
Sbjct: 14 EGQPLFLRCHGWRNWDVYKVIYYKDGEA----LKYWYENHNISITNATVEDSGTYYCTGK 69

Query: 64 NVHGMDESKG-RLIVLHGP 81
                ES+   + V+  P
Sbjct: 70 VWQLDYESEPLNITVIKAP 88

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 16/108 (14%)

Query: 180 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 239
           P  P  ++ + + +  A + W       +       I  T   +            +   
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWK----PPQNPVDTYDIQVTAPGAPPLQAETPGSAVDYPL 56

Query: 240 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 287
           +            V  + Y   V          P+S +    T  + P
Sbjct: 57  HDL----------VLHTNYTATVRGLRGPNLTSPASITFT--TGLEAP 92

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 9/101 (8%), Positives = 18/101 (17%), Gaps = 13/101 (12%)

Query: 179 PPGLPGGVQVVEVHKTSATIQWTDGATNGRP-ITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P   P  V +   +  +  + W        P  T          +               
Sbjct: 2   PT--PTNVTIESYNM-NPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCN 58

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 278
                           P ++   +V A         +    
Sbjct: 59  ISDHV---------GDPSNSLWVRVKARVGQKESAYAKSEE 90

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 15/107 (14%), Positives = 23/107 (21%), Gaps = 12/107 (11%)

Query: 180 PGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 237
           P  P  V    V  +     + W   +T   P +                     +    
Sbjct: 8   PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67

Query: 238 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS-PQYNTP 283
                               Y  +V A +    G  S  S   + TP
Sbjct: 68  AH--------TITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHATP 105

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 8/104 (7%)

Query: 496 PPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT 553
           PP  V  + +  NP  + VTW              + ++ +   + +       + + N 
Sbjct: 10  PPENVVARPVPSNPRRLEVTW---QTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66

Query: 554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 595
               I D   GK Y ++V A  +   G  S  S A       E+
Sbjct: 67  TAHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSVAAHATPWTEE 109

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 376 PESEVVTIFSAE---DMPQV--APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRI 430
           P ++ ++  + E   D  +V   P  +  R    T+I V+W P E     +RG  IG+ I
Sbjct: 1   PATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGI 59

Query: 431 KYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 482
                               + +  I  L P + Y + + A+NN GEG    
Sbjct: 60  GSPHAQ-------TIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY 104

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 171 KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSE 230
           ++ +     P +P  + V     TS  + WT        +  Y I              +
Sbjct: 12  ESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVD 70

Query: 231 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 277
           +           ++  +IEN L P S Y   + A N +G G P   S
Sbjct: 71  Y----------KQRYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYES 106

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 6/112 (5%)

Query: 479 PESERYLERTYRKAPQKP--PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEV 536
           P ++     T+     +   P       + P    +   +  P  +   + GY +     
Sbjct: 1   PATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYG-- 58

Query: 537 DQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 588
               S    TI          I +L P   Y + + AF+N G+G     +  
Sbjct: 59  --IGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 108

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 19/90 (21%)

Query: 1  YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIFE 41
             E  NV +  +        F W K                           GR  I+ 
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 42 NGNLLISPVSRDDSGIYSCTATNVHGMDES 71
          NG+LL   ++  D G+Y+   T+ +     
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQ 99

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 403 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 462
           NS  + V+W   +          +   ++   +   E+    +  +T+        +   
Sbjct: 15  NSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSAT------VICR 68

Query: 463 TKYYVKVMAYNNAGEGPESE 482
               + V A +       SE
Sbjct: 69  KNASISVRAQDRYYSSSWSE 88

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 24 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 68
          ++K+          K+F+NG L I  +  DD  IY  +  +  G 
Sbjct: 44 FRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGK 88

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 4  EGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIF--------ENGNLLISPVSRDD 54
           G    + C  +    +P   W K           +              L   PV  +D
Sbjct: 17 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 76

Query: 55 SGIYSCTATNVHGMDESK 72
          +G Y C+A     + ES 
Sbjct: 77 NGSYRCSANFQSNLIESH 94

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 555
            P  + +  ++ + + + W     +   E ++ Y        +     + T   V     
Sbjct: 5   APENLTLHKLSESQLELNWNNRFLNHCLEHLVQY--------RTDWDHSWTEQSVDYRHK 56

Query: 556 ADIVDLSPGKRYHMRVLAFSNGGDGRMS-----SPAITF 589
             +  +   KRY  RV +  N   G        S  I +
Sbjct: 57  FSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHW 95

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCT 61
           G +V + C  E     +  W        +   +       G  L +  S  +    +C 
Sbjct: 16 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 75

Query: 62 ATNVHGMDESKGRLIV 77
          A N  G  E   ++ V
Sbjct: 76 AENDVGRAEVSVQVNV 91

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 4  EGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 62
                + C     P+P  + W +    IG         N            S ++SC A
Sbjct: 15 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN------VTGVTQSTMFSCEA 68

Query: 63 TNVHGMDESK 72
           N+ G+  S+
Sbjct: 69 HNLKGLASSR 78

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 81  PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 140
            ++ ++L P   ++    ++L      +   +V ++     +++                
Sbjct: 6   TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT- 63

Query: 141 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 177
              L I+  S AD   Y+CV    VG     T + V+
Sbjct: 64  ---LTISQCSLADDAAYQCV----VGGEKCSTELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 4  EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYS 59
          +G  + +     A    +  W K+G  I   G + IFE+      L IS  S  D   Y 
Sbjct: 20 KGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQ 78

Query: 60 CTATNVHGMDESKGRLIV 77
          C        ++    L V
Sbjct: 79 CVVGG----EKCSTELFV 92

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 7/67 (10%), Positives = 14/67 (20%), Gaps = 3/67 (4%)

Query: 4  EGGNVTIFCNPEAA---PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 60
           G  +T+ C  E      +   V  +    +               +          +SC
Sbjct: 18 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSC 77

Query: 61 TATNVHG 67
                 
Sbjct: 78 RTELDLR 84

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 45  LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 78
           + ++ +   D G Y C      G+   K  L+VL
Sbjct: 90  INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	626
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.69
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.67
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.66
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.65
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.64
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.64
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.64
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.64
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.63
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.63
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.62
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.62
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.61
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.61
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.6
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.59
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.56
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.56
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.56
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.56
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.56
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.55
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.55
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.55
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.55
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.55
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.55
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.54
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.54
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.54
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.54
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.53
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.53
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.53
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.53
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.53
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.53
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.52
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.51
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.51
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.51
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.51
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.51
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.51
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.51
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.5
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.5
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.5
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.5
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.5
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.5
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.48
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.48
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.48
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.47
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.47
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.47
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.47
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.47
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.47
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.47
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.47
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.47
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.47
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.47
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.47
d2avga1	110	Cardiac myosin binding protein C, different domain	99.47
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.46
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.46
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.46
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.46
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.46
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.46
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.46
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.45
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.45
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.45
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.45
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.44
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.44
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.44
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.44
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.44
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.44
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.43
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.43
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.43
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.43
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.43
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.43
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.42
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.42
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.42
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.42
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.41
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.41
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.41
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.41
d2avga1	110	Cardiac myosin binding protein C, different domain	99.4
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.4
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.4
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.4
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.4
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.38
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.38
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.38
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.37
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.37
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.37
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.37
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.37
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.37
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.36
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.36
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.36
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.36
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.35
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.35
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.35
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.35
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.35
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.35
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.34
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.34
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.34
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.34
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.34
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.33
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.33
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.33
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.33
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.33
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.33
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.32
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.32
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.31
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.31
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.3
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.3
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.3
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.3
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.3
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.29
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.29
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.29
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.29
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.29
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.29
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.28
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.28
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.28
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.28
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.27
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.27
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.27
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.27
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.27
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.27
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.27
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.27
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.26
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.26
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.26
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.26
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.26
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.26
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.25
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.25
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.25
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.25
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.24
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.24
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.24
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.23
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.23
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.23
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.22
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.22
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.22
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.21
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.21
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.21
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.21
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.2
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.2
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.2
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.19
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.19
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.19
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.19
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.19
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.19
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.19
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.18
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.17
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.17
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.16
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.15
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.14
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.14
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.13
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.13
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.12
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.12
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.11
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.1
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.08
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.06
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.05
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.96
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.95
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.93
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.92
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.9
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.88
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.87
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.83
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.8
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.8
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.78
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.78
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.74
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.71
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.63
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.62
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.53
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.5
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.48
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.46
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.42
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.42
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.41
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.41
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.41
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.4
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.38
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.38
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.37
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.37
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.35
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.35
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.33
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.33
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.32
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.32
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.31
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.31
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.31
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.3
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.3
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.3
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.29
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.28
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.28
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.27
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.26
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.25
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.25
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.23
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.23
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.22
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.21
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.2
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.2
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.19
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.19
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.19
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.19
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.18
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.18
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.17
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.17
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.17
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.16
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.16
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.15
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.14
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.13
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.13
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.13
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.12
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.12
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.12
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.11
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.09
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.09
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.09
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.08
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.08
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.08
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.08
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.06
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.06
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.06
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.05
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.05
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.05
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.04
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.03
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.03
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.03
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.03
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.03
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.02
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.01
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.01
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.01
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.01
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.01
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.01
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.0
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.0
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.99
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.99
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.99
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.99
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.98
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.98
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.97
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.97
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.97
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.97
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.96
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.95
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.95
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.95
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.94
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.94
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.93
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.93
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.93
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.91
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.91
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.91
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.9
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.9
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.9
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.9
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.9
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.89
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.87
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.87
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.87
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.86
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.86
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.86
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.85
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.85
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.85
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.84
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.84
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.83
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.83
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.83
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.82
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.82
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.82
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.81
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.81
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.81
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.81
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.8
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.8
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.79
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.79
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.79
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.78
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.78
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.78
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.78
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.78
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.77
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.77
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.76

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=6.5e-18  Score=123.08  Aligned_cols=76  Identities=32%  Similarity=0.591  Sum_probs=70.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|||.+|..++++.+ .+++|.|.++..+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        13 v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          13 ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee-eeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            56899999999999999999999999999998888776 46789999999999999999999999999888998883

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-17  Score=123.48  Aligned_cols=81  Identities=20%  Similarity=0.298  Sum_probs=74.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|||..|..++++.+...+   +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        12 v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   91 (101)
T d2cqva1          12 VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV   91 (101)
T ss_dssp             EETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred             EeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEE
Confidence            568999999999999999999999999999988888876544   59999999999999999999999999999999998


Q ss_pred             eCCc
Q psy12061         79 HGPS   82 (626)
Q Consensus        79 ~~p~   82 (626)
                      ..|.
T Consensus        92 ~~P~   95 (101)
T d2cqva1          92 DKPD   95 (101)
T ss_dssp             CSCS
T ss_pred             ecCC
Confidence            8663

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.69  E-value=2.8e-17  Score=119.76  Aligned_cols=74  Identities=32%  Similarity=0.597  Sum_probs=66.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|||.+|.. +|+.+. ++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        15 v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          15 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             ECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEE-TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEe-eeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            57899999999999999999999999999964 466654 556999999999999999999999999888888876

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=124.03  Aligned_cols=113  Identities=20%  Similarity=0.364  Sum_probs=91.6

Q ss_pred             CCCCCCC-ccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCcc
Q psy12061        475 AGEGPES-ERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNT  553 (626)
Q Consensus       475 ~g~s~~s-~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~  553 (626)
                      .|.|+++ ..+.++|.+++|. +|.++.+...+.+++.|+|+  +|...+|.|.+|.|+|+..+..... ........+.
T Consensus         2 ~G~G~pss~~v~~~T~~~~P~-~P~~~~~~~~~~~sv~v~W~--~P~~~~g~i~~Y~i~y~~~~~~~~~-~~~~~~~~~~   77 (117)
T d1wfoa1           2 IGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIILAYQITHRLNTTTANT-ATVEVLAPSA   77 (117)
T ss_dssp             CCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECC--CCSCCCSCCCEEEEEEEESSCCCSC-CCEEEECTTC
T ss_pred             ccCCCCCCCCEEEECCCCCCc-CCCCcEEEEecCCEEEEEEE--CCCCCCCceEEEeeeeeeccCCCce-EeEEecCCce
Confidence            4777665 4678899999885 89999999999999999999  6777789999999998776654332 2233456678


Q ss_pred             ceEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        554 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       554 ~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      +.+.+.+|+|++.|.|+|+|+|..|.|++|+. +.+++.
T Consensus        78 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~-~~~tT~  115 (117)
T d1wfoa1          78 RQYTATGLKPESVYLFRITAQTRKGWGEAAEA-LVVTTE  115 (117)
T ss_dssp             CEEEEESCCSSSEEEEEEEEECSSCEEEEEEE-EEECCS
T ss_pred             EEEEECCCCCCCEEEEEEEEECCCcCCCCcCC-EEEECC
Confidence            89999999999999999999999999998854 456554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=2e-17  Score=123.33  Aligned_cols=79  Identities=30%  Similarity=0.426  Sum_probs=71.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|||..|..+.++.+..++   .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        13 v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   92 (97)
T d1koaa1          13 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT   92 (97)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEE
T ss_pred             EeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEe
Confidence            568999999999999999999999999999888887776555   59999999999999999999999999999999886


Q ss_pred             eC
Q psy12061         79 HG   80 (626)
Q Consensus        79 ~~   80 (626)
                      ..
T Consensus        93 ~~   94 (97)
T d1koaa1          93 RH   94 (97)
T ss_dssp             CS
T ss_pred             ec
Confidence            53

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.5e-17  Score=125.72  Aligned_cols=107  Identities=22%  Similarity=0.383  Sum_probs=87.3

Q ss_pred             EEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCC
Q psy12061        484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP  563 (626)
Q Consensus       484 ~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  563 (626)
                      +.++|.+++|..+|.++++...+.+++.|+|++++....+|.|.+|.|+|+..+....  ........+.+.+.|.+|+|
T Consensus         2 v~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~--~~~~~~~~~~~~~~i~~L~p   79 (119)
T d1x5ha1           2 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSD--VTETLVSGTQLSQLIEGLDR   79 (119)
T ss_dssp             CCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEE--EECCBCCTTCCEEEEECCCS
T ss_pred             EEEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccc--eeeeecCCCccEEEeCCCCC
Confidence            3568888999889999999999999999999976667788999999999877654321  12233456778999999999


Q ss_pred             CceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        564 GKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       564 ~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      ++.|.|+|+|+|..|.|++|+++ .++|.+
T Consensus        80 ~t~Y~~~V~A~n~~G~G~~S~~~-~~~T~~  108 (119)
T d1x5ha1          80 GTEYNFRVAALTINGTGPATDWL-SAETFE  108 (119)
T ss_dssp             SCEEEEECEEEETTEEEEECCCE-EEECCS
T ss_pred             CCEEEEEEEEEcCCcCCCCCCCE-EEEeCC
Confidence            99999999999999999999664 465543

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.67  E-value=3.1e-17  Score=120.51  Aligned_cols=77  Identities=25%  Similarity=0.513  Sum_probs=69.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|||.+|..+.++.+...   ++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        11 v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          11 VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             EeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            67999999999999999999999999999988777666544   369999999999999999999999999888888873

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.66  E-value=1.1e-16  Score=120.58  Aligned_cols=77  Identities=32%  Similarity=0.510  Sum_probs=69.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC--C--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~--g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|||.+|..+.++.+..+  +  +|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus        20 v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V   99 (102)
T d1fhga_          20 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV   99 (102)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEE
Confidence            56899999999999999999999999999998888877533  2  5999999999999999999999999999999988


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus       100 ~  100 (102)
T d1fhga_         100 E  100 (102)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=9.9e-17  Score=119.74  Aligned_cols=77  Identities=26%  Similarity=0.402  Sum_probs=69.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc--CC--cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NG--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~--~g--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||.+|..+.++.+..  ++  +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        16 v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V   95 (98)
T d1g1ca_          16 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   95 (98)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEE
Confidence            5689999999999999999999999999998877766543  33  6999999999999999999999999999999988


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus        96 ~   96 (98)
T d1g1ca_          96 Q   96 (98)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=3.5e-16  Score=113.87  Aligned_cols=87  Identities=21%  Similarity=0.372  Sum_probs=75.5

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      +|.+...++..+.+.+|+++.|.|.+.|.|.|.+  .|+|||.++..        .+....++.|.|.+++..|+|.|+|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v--~W~~~~~~i~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C   71 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV--VWSHNAKPLSG--------GRATVTDSGLVIKGVKNGDKGYYGC   71 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCC--EEEETTEECCS--------SSEEEETTEEEESSCCSTTCEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEE--EEEeCCccCcc--------ccEEEeeeeEEECCCChhhCEEEEE
Confidence            4667766667788999999999999999998855  89999999864        4556677889999999999999999


Q ss_pred             EEEeCCCceEEEEEEEE
Q psy12061        160 VVKSTVGKISTKTTVIV  176 (626)
Q Consensus       160 ~a~n~~g~~~~~~~l~v  176 (626)
                      .|.|..|..+..+.|.|
T Consensus        72 ~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          72 RATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999988888876

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=3.8e-16  Score=113.57  Aligned_cols=87  Identities=20%  Similarity=0.463  Sum_probs=77.0

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.|+. .|.+..+..|+++.|.|.+.|.|.|.  +.|+|||.++...       .++.+.++.|.|.+++.+|+|.|+|.
T Consensus         2 P~f~~-~~~~~~v~~G~~~~l~C~~~g~P~p~--v~W~k~g~~i~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~   71 (89)
T d1cs6a4           2 PDWLD-VITDTEADIGSDLRWSCVASGKPRPA--VRWLRDGQPLASQ-------NRIEVSGGELRFSKLVLEDSGMYQCV   71 (89)
T ss_dssp             EEEEE-CCCCEEEETTCCEEEECEEEEESCCE--EEEEETTEECCCC-------SSEEEETTEEEESSCCGGGCEEEEEE
T ss_pred             CCeEE-ECCCEEECCCCcEEEEEEEEEEcCCE--EEEEEeecccccc-------ceeeeeeeeEEEEeecccCCEEEEEE
Confidence            55554 57889999999999999999999874  5899999999764       56777889999999999999999999


Q ss_pred             EEeCCCceEEEEEEEEe
Q psy12061        161 VKSTVGKISTKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~  177 (626)
                      |.|..|..+..+.|.|+
T Consensus        72 a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          72 AENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEEE
Confidence            99999999999999886

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-16  Score=121.49  Aligned_cols=110  Identities=24%  Similarity=0.329  Sum_probs=87.4

Q ss_pred             CCCCCCccEEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccce
Q psy12061        476 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD  555 (626)
Q Consensus       476 g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      |.|+.|..+.++|.+.+|..||.++ +...+.+++.|.|+++++.+.++.|.+|.|+|+..+...    ....  .....
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~-~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~----~~~~--~~~~~   73 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN----VQVL--NTNKT   73 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSC-BCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS----CEEE--EESSS
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcce-EEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCc----eeee--eceee
Confidence            6788999999999999998788766 455678999999998778888999999999987655432    1121  23456


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        556 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       556 ~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      +.+.+|.+++.|.|+|+|+|.+|.|++|+++...++.
T Consensus        74 ~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~~~  110 (117)
T d1wj3a_          74 SAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT  110 (117)
T ss_dssp             EEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECCCC
T ss_pred             EEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEeccC
Confidence            7788999999999999999999999999775443443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.1e-16  Score=115.10  Aligned_cols=77  Identities=22%  Similarity=0.401  Sum_probs=67.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+.|.|.|.|.|+|++..+...  .++....+++|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus        13 v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          13 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             CCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEEE
Confidence            679999999999999999999999999998744  45777778899999999999999999999988877776666663

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-16  Score=120.91  Aligned_cols=114  Identities=20%  Similarity=0.363  Sum_probs=94.2

Q ss_pred             CCCCCCC-ccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCc
Q psy12061        372 VGPGPES-EVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT  450 (626)
Q Consensus       372 ~g~~~~s-~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~  450 (626)
                      .|.|.++ ..+.++|.+++|. +|.++.+...+.+++.|+|++|...    +|.|.+|.|+|+..+..............
T Consensus         2 ~G~G~pss~~v~~~T~~~~P~-~P~~~~~~~~~~~sv~v~W~~P~~~----~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~   76 (117)
T d1wfoa1           2 IGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAP----NGIILAYQITHRLNTTTANTATVEVLAPS   76 (117)
T ss_dssp             CCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECCCCSCC----CSCCCEEEEEEEESSCCCSCCCEEEECTT
T ss_pred             ccCCCCCCCCEEEECCCCCCc-CCCCcEEEEecCCEEEEEEECCCCC----CCceEEEeeeeeeccCCCceEeEEecCCc
Confidence            4677665 4567788888897 8999999999999999999988654    37799999999887776554444455666


Q ss_pred             cceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       451 ~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      ...+.+.+|+|++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus        77 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~tT~e  116 (117)
T d1wfoa1          77 ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK  116 (117)
T ss_dssp             CCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSS
T ss_pred             eEEEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEECCC
Confidence            6789999999999999999999999999999888887764

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.64  E-value=6.2e-16  Score=117.11  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=82.0

Q ss_pred             CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       491 ~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      ++|..+|.++++...+.+++.|+|+++++...||.+.+|.|.|+..+..... ..........+++.|.+|.+++.|.|+
T Consensus         2 ~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (105)
T d1cfba2           2 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAW-ENNNIFDWRQNNIVIADQPTFVKYLIK   80 (105)
T ss_dssp             CCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCC-EEEEECCTTCCEEEECSCCSSCEEEEE
T ss_pred             CCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccce-eEEEecCCCccEEEECCCCCCCEEEEE
Confidence            5677889999999999999999999777788899999999999876654322 223344667889999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEe
Q psy12061        571 VLAFSNGGDGRMSSPAITFQ  590 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~  590 (626)
                      |+|+|..|.|++|.+.+...
T Consensus        81 V~A~N~~G~gp~S~~~v~~~  100 (105)
T d1cfba2          81 VVAINDRGESNVAAEEVVGY  100 (105)
T ss_dssp             EEEEETTEECSSCCCCEEEE
T ss_pred             EEEEeCCcCCCCCCCcEeEc
Confidence            99999999999997765433

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-15  Score=117.42  Aligned_cols=105  Identities=26%  Similarity=0.385  Sum_probs=85.7

Q ss_pred             EeecCCCCCCCCceEEEeee--CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCC
Q psy12061        486 ERTYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP  563 (626)
Q Consensus       486 ~~t~~~~p~~~p~~l~~~~~--~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  563 (626)
                      .+|.+.+|..||.++++...  +.+++.|+|+  +|...++.|.+|.|+|+.................+.+.+.|.+|.|
T Consensus         4 ~~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~--~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   81 (111)
T d1x5ka1           4 GTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTL   81 (111)
T ss_dssp             SCSCCCCCCSCCEEEEEEECSSCTTCEEEEEE--CCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCS
T ss_pred             eEeCCCCCCCCCCCcEEEEecCCCCEEEEEEE--ccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCC
Confidence            56778889889999887653  6779999999  6777889999999988766555444445556677888999999999


Q ss_pred             CceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        564 GKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       564 ~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      ++.|.|+|+|+|..|.|++|++ +.++|.+
T Consensus        82 ~t~Y~~~V~A~n~~G~g~~S~~-v~~~T~~  110 (111)
T d1x5ka1          82 DTPYYFKIQARNSKGMGPMSEA-VQFRTPK  110 (111)
T ss_dssp             SSEEEEEEEEECSSCBCCCCCC-EEEECCC
T ss_pred             CCEEEEEEEEEcCCCCcCCCCC-EEEECCC
Confidence            9999999999999999999965 5576653

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.9e-16  Score=118.44  Aligned_cols=105  Identities=22%  Similarity=0.327  Sum_probs=85.5

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc--eeeecCccceEEecCCCCC
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND--TIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~p~  564 (626)
                      +|.+++|++||.++++...+.+++.|+|++++....++.+.+|.|.|+..+........  ..........+.|.+|.|+
T Consensus         2 ~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   81 (109)
T d1va9a1           2 STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKF   81 (109)
T ss_dssp             CSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSS
T ss_pred             CCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcc
Confidence            57888999999999999999999999999766667788999999999877654332222  2234567789999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      +.|.|+|+|+|..|.|++|+++. ++|.
T Consensus        82 t~Y~~~V~a~n~~G~g~~S~~v~-~~T~  108 (109)
T d1va9a1          82 AQYGVVVQAFNRAGTGPSSSEIN-ATTL  108 (109)
T ss_dssp             CCEEEEEEEEETTEECCCCCCEE-CCCC
T ss_pred             eEEEEEEEEEcCCcCCCCCCCEE-EEcC
Confidence            99999999999999999997654 5543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=117.46  Aligned_cols=76  Identities=25%  Similarity=0.389  Sum_probs=66.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcE---E-EccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---K-IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~---~-~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|+++.|.|.+.|.|.|+|.|+|||.+|..+.++   . ....++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        17 v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            468999999999999999999999999999754332   2 223458999999999999999999999999988898887

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=9.6e-17  Score=118.46  Aligned_cols=76  Identities=21%  Similarity=0.251  Sum_probs=68.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|++++|.|.+.|.|.|.+.|+||+..|..+.++.+..++   +|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        14 v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          14 IKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             ECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            578999999999999999999999999999877777665543   6999999999999999999999999988888887

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.1e-15  Score=115.91  Aligned_cols=98  Identities=23%  Similarity=0.321  Sum_probs=78.6

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .|+.+|.++.+...+.+++.|+|.  ++.++++.|.+|.|+|+..+................+.+.+.+|.|++.|.|+|
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~--p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV   86 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWI--PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRV   86 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECC--CCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEE--CCCCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEE
Confidence            356688889999899999999998  667778899999999887665433222333445677899999999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEee
Q psy12061        572 LAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       572 ~a~~~~G~g~~s~~~~~~~~  591 (626)
                      +|+|..|.|++|+++..|++
T Consensus        87 ~A~N~~G~s~~S~pS~p~~~  106 (108)
T d1x4za1          87 RALNMLGESEPSAPSRPYVV  106 (108)
T ss_dssp             EEEETTEECCCCCCCCCEEC
T ss_pred             EEECCCcCCCCCCCCCCEEe
Confidence            99999999999987654443

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.7e-15  Score=113.99  Aligned_cols=99  Identities=22%  Similarity=0.435  Sum_probs=83.9

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      |..+|.++.+..++.+++.|+|+++++...++.+.+|.|+|+..+..................+.|.+|+|++.|.|+|+
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            45689999999999999999999877888899999999999877665444455556677888999999999999999999


Q ss_pred             EEecCCCCCCCCCcEEEeec
Q psy12061        573 AFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       573 a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |+|..|.|++|+. +.++|.
T Consensus        81 a~n~~G~s~~S~~-~~~~T~   99 (101)
T d1x4ya1          81 CFNEGGESEFSNV-MICETK   99 (101)
T ss_dssp             EECTTCCCCCCCC-EEEECC
T ss_pred             EEcCCCCCCCCCc-EEEEcc
Confidence            9999999999954 456554

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.3e-16  Score=116.93  Aligned_cols=74  Identities=32%  Similarity=0.507  Sum_probs=63.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|++..+..   .....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        17 ~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          17 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EETTCCEEEECEEEEESCCEEEEEECCSCCSC---CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEccCCEEEEEecccccce---EeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            57899999999999999999999997754422   233456789999999999999999999999999888888884

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.9e-16  Score=114.84  Aligned_cols=96  Identities=18%  Similarity=0.321  Sum_probs=79.7

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYE  158 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~  158 (626)
                      |.++. .|.+..+.+|+++.|.|.+.+.|.|  ++.|+|||..+.....     .++..  ....|.|.+++.+|+|.|+
T Consensus         1 P~~~~-~p~~~~v~~G~~~~l~C~v~g~p~p--~v~W~k~~~~l~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~   72 (101)
T d2cqva1           1 PQIIQ-FPEDQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQESEH-----MKVENSENGSKLTILAARQEHCGCYT   72 (101)
T ss_dssp             CEESC-CCCSEEEETTCCEEEEEEEESSSSC--EEEEEESSSBCCCSSS-----EEEEECSSEEEEEETTCCTTTCEEEE
T ss_pred             CeEEe-eCCcEEEeCCCcEEEEEEEEecCCC--EEEEEeCceeeccCCc-----EEEEEecceeEEEEeeCCcccCEEEE
Confidence            44443 5788999999999999999999876  4589999999876531     12222  2347999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        159 CVVKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |.|.|..|..+..+.|.|.++|.+|.
T Consensus        73 C~a~N~~G~~~~~~~l~V~~~P~pP~   98 (101)
T d2cqva1          73 LLVENKLGSRQAQVNLTVVDKPDPPA   98 (101)
T ss_dssp             EEEECSSCEEECCEEEEEECSCSCCC
T ss_pred             EEEEECCCEEEEEEEEEEEecCCCcC
Confidence            99999999999999999999999884

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-16  Score=115.41  Aligned_cols=77  Identities=23%  Similarity=0.312  Sum_probs=66.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.|.|.|++++..+..+........++|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus        13 ~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            35899999999999999999999998877755444444445679999999999999999999999999999999885

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=5.3e-16  Score=116.30  Aligned_cols=78  Identities=29%  Similarity=0.563  Sum_probs=66.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC----CcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----GRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~----~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||.+|...    .++... ..++|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        17 ~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   96 (100)
T d1qz1a3          17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK   96 (100)
T ss_dssp             TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            468999999999999999999999999999643    222222 234799999999999999999999999999999998


Q ss_pred             EEe
Q psy12061         77 VLH   79 (626)
Q Consensus        77 v~~   79 (626)
                      |..
T Consensus        97 V~~   99 (100)
T d1qz1a3          97 VFA   99 (100)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            853

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.3e-15  Score=113.24  Aligned_cols=91  Identities=19%  Similarity=0.253  Sum_probs=71.5

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      |+.+|.++.+...+.+++.|+|++ +..++++.|.+|.|+|+..+...+.  .........+.+.+.+|.+++.|.|+|+
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~p-P~~~~~~~i~~Y~V~~~~~~~~~~~--~~~~~~~~~~~~~v~~L~~~~~Y~frV~   77 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWV--PANKEPVERCGFTVKDLPTGARILFRVV   77 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEEC-CSCCCSSCCCEEEEEEEETTCCCCE--ESSSSCBSSSEEEEECCCTTCCEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEEC-CCcCCCCCceEEEEEEEecCcceeE--EeeeecCceeEEEECCCcCCeEEEEEEE
Confidence            567899999999999999999994 2334456899999998876654321  1112344668899999999999999999


Q ss_pred             EEecCCCCCCCCCc
Q psy12061        573 AFSNGGDGRMSSPA  586 (626)
Q Consensus       573 a~~~~G~g~~s~~~  586 (626)
                      |+|..|.|++|...
T Consensus        78 A~n~~G~s~~s~~~   91 (98)
T d1x5ya1          78 GVNIAGRSEPATLL   91 (98)
T ss_dssp             EEETTEECCCCCCS
T ss_pred             EECCCcCCCCcCCC
Confidence            99999999988643

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.3e-16  Score=113.29  Aligned_cols=77  Identities=26%  Similarity=0.428  Sum_probs=65.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-C----CcEEEccCCCCCCEEEEEEEEcCCCCc-eeeEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-N----GNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~----g~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l   75 (626)
                      |.+|++++|.|.+.|.|.|.|.|+|||..|....+..+.. +    +.|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus         8 v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l   87 (91)
T d1rhfa1           8 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL   87 (91)
T ss_dssp             EETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEE
T ss_pred             EcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEE
Confidence            5689999999999999999999999999998776655432 2    259999999999999999999999985 446888


Q ss_pred             EEE
Q psy12061         76 IVL   78 (626)
Q Consensus        76 ~v~   78 (626)
                      .|.
T Consensus        88 ~V~   90 (91)
T d1rhfa1          88 TVE   90 (91)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            774

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=7e-16  Score=114.58  Aligned_cols=77  Identities=23%  Similarity=0.391  Sum_probs=64.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc-----cCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRL   75 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~-----~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l   75 (626)
                      +.+|++++|.|.+.|.|.|.|.|+|||.+|..+.+..+.     ...+|.|.+++.+|+|.|+|.|.|..|...+ .+.|
T Consensus        15 ~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L   94 (97)
T d1biha3          15 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL   94 (97)
T ss_dssp             EETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEE
T ss_pred             EecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEE
Confidence            568999999999999999999999999999755433332     1236999999999999999999999998654 5778


Q ss_pred             EEE
Q psy12061         76 IVL   78 (626)
Q Consensus        76 ~v~   78 (626)
                      .|.
T Consensus        95 ~Vl   97 (97)
T d1biha3          95 TVV   97 (97)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            773

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.1e-15  Score=113.41  Aligned_cols=79  Identities=24%  Similarity=0.410  Sum_probs=69.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccC-CcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-GNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~-g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~   79 (626)
                      |.+|++++|.|.+.+ |++.|.|+|+|..|..+.++.+..+ ++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|..
T Consensus        15 v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~   93 (96)
T d1l6za2          15 VKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF   93 (96)
T ss_dssp             ECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECC
T ss_pred             EeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEc
Confidence            578999999999876 5689999999999998888887654 47999999999999999999999998754 58999977


Q ss_pred             CC
Q psy12061         80 GP   81 (626)
Q Consensus        80 ~p   81 (626)
                      +|
T Consensus        94 ~P   95 (96)
T d1l6za2          94 DP   95 (96)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.4e-16  Score=117.47  Aligned_cols=97  Identities=24%  Similarity=0.396  Sum_probs=81.0

Q ss_pred             EEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCC
Q psy12061        485 LERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       485 ~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  564 (626)
                      .++|.+++|. +|.++++...+.+++.|+|+  +|...+|.|.+|.|+|+..+....  ..........+++.|.+|.|+
T Consensus         3 ~v~T~e~vP~-~p~~l~~~~~~~~sv~l~W~--~P~~~ng~i~~Y~i~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~   77 (106)
T d1wfna1           3 LVRTHEDVPG-PVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEEYNRTNT--RVTHYLPNVTLEYRVTGLTAL   77 (106)
T ss_dssp             SCCSSCCSCC-CCSCCEEESCCSSEEEEECC--CCTTCCSCCCEEEEEEEESSCGGG--CCCEEECSSCCEEEEESCCTT
T ss_pred             EEEcCCCCCc-CCCCcEEEEecCCEEEEEEE--CCCCCCCcEEeEEEEEEECCCCcc--eEEEecCCCeeEEEEccCCCC
Confidence            4678888886 78899999999999999999  677788999999999877654322  233445667789999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCc
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPA  586 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~  586 (626)
                      +.|.|+|+|+|..|.|++|..+
T Consensus        78 t~Y~~~V~A~n~~G~g~~s~~~   99 (106)
T d1wfna1          78 TTYTIEVAAMTSKGQGQVSAST   99 (106)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEEEEECCCCCcCCcCCE
Confidence            9999999999999999988643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.8e-16  Score=111.67  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEeCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP   81 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p   81 (626)
                      +.+|++++|.|.+.|.|.|+|.|++++..+.       ..+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|
T Consensus        11 v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~-------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          11 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             EETTCCEEEEEECCTTCCCEEEEECTTCCEE-------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             EECCCeEEEEEEeEcCCchheEEEeecccce-------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            5799999999999999999999999775432       245579999999999999999999999999999999887654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.4e-16  Score=112.68  Aligned_cols=76  Identities=20%  Similarity=0.403  Sum_probs=64.9

Q ss_pred             CCCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      ++.+|++++|.|.+.| |.|.+.|+++|.+|.. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|.......|.+
T Consensus         8 ~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           8 FFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             eEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            4689999999999998 6789999999999864 46667778889999999999999999999999887665554444

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.6e-15  Score=110.92  Aligned_cols=74  Identities=31%  Similarity=0.501  Sum_probs=64.8

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+. |.|.|.|.|+|++..+..+.  ....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        14 v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          14 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc--cEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            57899999999996 67889999999998876543  3345788999999999999999999999999888888877

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=1.9e-15  Score=110.61  Aligned_cols=88  Identities=22%  Similarity=0.363  Sum_probs=73.4

Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .+|.+....|.+..+.+|++++|.|.+.|.|.|.  +.|+|++.....         .....++.|.|.+++.+|+|.|+
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~--i~W~k~~~~~~~---------~~~~~~~~L~I~~v~~~D~G~Y~   71 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ--IKWRKLDGSQTS---------KWLSSEPLLHIQNVDFEDEGTYE   71 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCE--EEEEECCSCCSC---------CCSBSSSEEEECSCCGGGCEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCE--EEEEecccccce---------EeeeeeeEEEeCCCCccCCEEEE
Confidence            3566666678899999999999999999999874  589997654432         23335678999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEe
Q psy12061        159 CVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~  177 (626)
                      |.|.|..|..+..+.|.|.
T Consensus        72 C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999999999998875

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=112.39  Aligned_cols=93  Identities=23%  Similarity=0.327  Sum_probs=75.3

Q ss_pred             CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       491 ~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      .+| ++|.++.+...+.+++.|+|+  +|...++.|.+|.|+|+..+....     .....+.+++.|.||.|++.|.|+
T Consensus         9 ~vP-~~P~~l~v~~~s~~si~l~W~--~P~~~~g~i~~Y~v~~~~~~~~~~-----~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1x5ga1           9 QLP-GPAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYMEKGTDKE-----QDVDVSSHSYTINGLKKYTEYSFR   80 (103)
T ss_dssp             SCC-CCCSSCEEEEEETTEEEEECC--CCSCCSSCCSEEEEEEEETTCCCC-----CCEEECSSEEEECSCCTTCEEEEE
T ss_pred             CCc-ccCCCcEEEEccCCEEEEEEE--CCcCCCccEEEEEEEEEeCCCcee-----EEEeccccEEecCCCCCCCEEEEE
Confidence            445 478899999999999999999  677788999999999887655422     122346678999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEeec
Q psy12061        571 VLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |+|+|..|.|++|+++. ++|.
T Consensus        81 V~A~n~~G~g~~S~~v~-v~T~  101 (103)
T d1x5ga1          81 VVAYNKHGPGVSTPDVA-VRTL  101 (103)
T ss_dssp             EEEECSSCCCCBCCCCC-EECC
T ss_pred             EEEEcCCcCcCCCCCEE-EEcC
Confidence            99999999999997654 4443

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.6e-16  Score=119.32  Aligned_cols=110  Identities=26%  Similarity=0.430  Sum_probs=88.9

Q ss_pred             EEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCcc
Q psy12061        382 TIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       382 ~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  461 (626)
                      .++|.+++|..+|.++++...+.+++.|+|++|.....  +|.|.+|.|+|+..+...... .........++.|.+|+|
T Consensus         3 ~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~--ng~i~~Y~v~y~~~~~~~~~~-~~~~~~~~~~~~i~~L~p   79 (119)
T d1x5ha1           3 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQ--NGQITGYKIRYRKASRKSDVT-ETLVSGTQLSQLIEGLDR   79 (119)
T ss_dssp             CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTC--CSCEEEEBCEEEETTEEEEEE-CCBCCTTCCEEEEECCCS
T ss_pred             EEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCC--CCCEEEEEEEEeeccccccee-eeecCCCccEEEeCCCCC
Confidence            35788889988899999999999999999998865433  378999999998766543221 122344567799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      ++.|.|+|+|+|..|.|++|..+.++|.+..++
T Consensus        80 ~t~Y~~~V~A~n~~G~G~~S~~~~~~T~~~~~~  112 (119)
T d1x5ha1          80 GTEYNFRVAALTINGTGPATDWLSAETFESDLD  112 (119)
T ss_dssp             SCEEEEECEEEETTEEEEECCCEEEECCSSCCC
T ss_pred             CCEEEEEEEEEcCCcCCCCCCCEEEEeCCCCCC
Confidence            999999999999999999999999999876553

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.57  E-value=1.1e-14  Score=109.13  Aligned_cols=96  Identities=22%  Similarity=0.330  Sum_probs=74.8

Q ss_pred             CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       491 ~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      ++| .+|.++.+. ...+++.|+|+  +|.+++++|.+|.|+|+........ ..........+++.+.+|.|++.|.|+
T Consensus         4 dvP-~~P~~~~v~-~~~~sv~lsW~--pp~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~p~t~Y~fr   78 (100)
T d1cfba1           4 DVP-NAPKLTGIT-CQADKAEIHWE--QQGDNRSPILHYTIQFNTSFTPASW-DAAYEKVPNTDSSFVVQMSPWANYTFR   78 (100)
T ss_dssp             CCC-CCCEEEEEE-ECSSEEEEEEE--CCCCTTSCCCEEEEEEEESSSTTCC-EEEEEEEETTCSEEEEECCSSEEEEEE
T ss_pred             cCC-CcCcCcEEE-EcCCEEEEEEc--CCcccccceEEEEEEEecCCCCcee-eEEeeecCCceEEEEecCCCCCEEEEE
Confidence            455 489999886 56789999999  6777889999999998765544322 222223345678899999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEee
Q psy12061        571 VLAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~~  591 (626)
                      |+|.|..|.|++|+++..+++
T Consensus        79 V~A~n~~G~g~~S~~s~~vtT   99 (100)
T d1cfba1          79 VIAFNKIGASPPSAHSDSCTT   99 (100)
T ss_dssp             EEEEETTEECCCCCCCCCEEE
T ss_pred             EEEEeCCcCCCCcCCCcCEEe
Confidence            999999999999987765554

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-15  Score=109.55  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+++.|.|.+. |.|.|.|.|++++.++.  .+.....++.|.|.+++.+|+|.|+|+|+|..|....++.|.|+
T Consensus        15 ~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          15 VALGASRQLTCRLACADRGASVQWRGLDTSLG--AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EETTCCEEEEEEECCSSTTCEEEEESSTTTTC--CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCcEEEEEEecCCCCccEEEEEEeeeeee--eeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            45899999999885 88999999999887763  23333344579999999999999999999999998889998884

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=9.8e-15  Score=108.20  Aligned_cols=91  Identities=19%  Similarity=0.287  Sum_probs=73.4

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .|..+|.++++..++.+++.|+|++ +....++.|.+|.|+|+..+..... ........+.+.+.|.||+|++.|.|+|
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~-P~~~~~~~i~gY~i~y~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   82 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEY-FKATIEGAHARSFKIAPLETATMYEFKL   82 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEEC-CTTCCGGGCCEEEEEEEETTCCSCC-EEEEEECTTCCEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEe-eeeccCCcccccceeEeeeeeccee-eeeeccCCceeEEEEeeccCCeEEEEEE
Confidence            4556788999999999999999994 3455678899999999876554321 2233456678899999999999999999


Q ss_pred             EEEecCCCCCCCC
Q psy12061        572 LAFSNGGDGRMSS  584 (626)
Q Consensus       572 ~a~~~~G~g~~s~  584 (626)
                      +|+|..|.|++|.
T Consensus        83 ~A~n~~G~s~~Ss   95 (95)
T d2ibga1          83 QSFSAASASEFSA   95 (95)
T ss_dssp             EEECSSCBCCCCC
T ss_pred             EEEeCCccCCCCC
Confidence            9999999999883

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.56  E-value=1.3e-14  Score=109.64  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=82.6

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      +++|..+|.++++...+.+++.|+|+++.....  +|.+.+|.|.|+..+................++.|.+|++++.|.
T Consensus         1 P~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~--ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   78 (105)
T d1cfba2           1 PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEH--NAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYL   78 (105)
T ss_dssp             CCCCSCCCSCCEEECSSTTCEEEECCCCCGGGT--CSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEE
T ss_pred             CCCCCCCCcCeEEEEccCCeEEEEEeCCChhhc--CceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEE
Confidence            357877899999999999999999998664433  488999999998877665544444555666789999999999999


Q ss_pred             EEEEEeeCCCCCCCCccE-EEeecCC
Q psy12061        467 VKVMAYNNAGEGPESERY-LERTYRK  491 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~-~~~t~~~  491 (626)
                      |+|+|.|..|.|++|... ..+|.++
T Consensus        79 ~~V~A~N~~G~gp~S~~~v~~~t~Ed  104 (105)
T d1cfba2          79 IKVVAINDRGESNVAAEEVVGYSGED  104 (105)
T ss_dssp             EEEEEEETTEECSSCCCCEEEESSSC
T ss_pred             EEEEEEeCCcCCCCCCCcEeEcCCCC
Confidence            999999999999988654 4466554

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.3e-15  Score=114.85  Aligned_cols=99  Identities=18%  Similarity=0.252  Sum_probs=78.2

Q ss_pred             CCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEE
Q psy12061        490 RKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM  569 (626)
Q Consensus       490 ~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~  569 (626)
                      .++|. +|.++.+..++.+++.|+|+  ++.+.++.|.+|.|+|+..+....  +.........+.+.|.+|+|++.|.|
T Consensus        13 ~~~P~-pP~~~~v~~~~~~sv~l~W~--p~~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~v~~L~p~t~Y~f   87 (117)
T d1uema_          13 SDLPG-PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAFSQSVSNS--WQTVANHVKTTLYTVRGLRPNTIYLF   87 (117)
T ss_dssp             CCSCB-CCCCCEEEEECSSCEEEECC--CCBCSSSCCCEEEEEEEETTTEEE--EEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred             CccCc-CCCCCEEEEccCCEEEEEEE--CCCcCCCCeEEEEEEEeccCCcee--eEEeccccccccceECCCCCCCEEEE
Confidence            35664 78899999999999999999  677788899999998876654321  22333344667899999999999999


Q ss_pred             EEEEEecCCCCCCCCCcEEEeecc
Q psy12061        570 RVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       570 ~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +|+|+|..|.|++|.++..+++.+
T Consensus        88 rV~A~N~~G~s~~S~~s~~v~t~~  111 (117)
T d1uema_          88 MVRAINPQGLSDPSPMSDPVRTQD  111 (117)
T ss_dssp             EEEEEETTEEEEECCCCCCEECCC
T ss_pred             EEEEEeCCcCCCCcCCCcCEEeCC
Confidence            999999999999997765555554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=6.6e-15  Score=109.40  Aligned_cols=96  Identities=15%  Similarity=0.142  Sum_probs=76.3

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.|+. .|.+..+.+|+++.|.|.+.|.|.|.  +.|+|||..+..+.....   ........|.|.+++..|+|.|+|.
T Consensus         2 P~f~~-~p~~~~v~~G~~~~l~C~~~g~P~p~--v~W~~~~~~l~~~~~~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~   75 (97)
T d1koaa1           2 PRFIV-KPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMK---RYNGNDYGLTINRVKGDDKGEYTVR   75 (97)
T ss_dssp             CEEEE-CCCCCEEETTSCEEEEEEEECSSCCE--EEEEETTEECCSBTTBBC---CCSTTEEEEEESCCCSGGGSCEEEE
T ss_pred             CEEEE-eCCCEEEeCCCcEEEEEEEEEcCCCE--EEEEEeeeccceeeEEEE---EecCCeeEEEeCCCceecCEEEEEE
Confidence            55554 57889999999999999999999874  589999999976531110   1111334799999999999999999


Q ss_pred             EEeCCCceEEEEEEEEeCCCCC
Q psy12061        161 VKSTVGKISTKTTVIVEGPPGL  182 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~~~P~~  182 (626)
                      |.|..|..+..+.|.|...+.|
T Consensus        76 a~N~~G~~~~~~~l~V~~~~~P   97 (97)
T d1koaa1          76 AKNSYGTKEEIVFLNVTRHSEP   97 (97)
T ss_dssp             EEETTEEEEEEECCEEECSCCC
T ss_pred             EEECCCEEEEEEEEEEeecCCC
Confidence            9999999999999999866543

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.6e-15  Score=111.22  Aligned_cols=99  Identities=18%  Similarity=0.259  Sum_probs=78.0

Q ss_pred             EEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCC
Q psy12061        484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP  563 (626)
Q Consensus       484 ~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  563 (626)
                      +.+.|..++|. +|.++++...+.+++.|+|+  +|.  ++.+.+|.|+|+..+....    ........+++.|.+|+|
T Consensus         2 v~v~T~~~vP~-~P~~~~~~~~~~~si~l~W~--~p~--~~~i~~Y~i~y~~~~~~~~----~~~~~~~~~~~~i~~L~p   72 (102)
T d1x5za1           2 IQVITQTGVPG-QPLNFKAEPESETSILLSWT--PPR--SDTIANYELVYKDGEHGEE----QRITIEPGTSYRLQGLKP   72 (102)
T ss_dssp             CCCCCCSCCCC-CCEEEEEECSSSSEEEEEEE--CCS--CCCCCEEEECBEESSSCCC----BCCEECSSSEEEEECCCT
T ss_pred             eEEECCCCCCc-CCCCeEEEEccCCEEEEEEE--CCC--CCCccceEEEEEeCCCCce----EEEEcCCcCEEEECCCCC
Confidence            34678888885 78999999999999999999  443  5678999999876554421    222334567899999999


Q ss_pred             CceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        564 GKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       564 ~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      ++.|.|+|+|+|..|.|++|.+ +.++|.
T Consensus        73 ~t~Y~~~V~A~n~~G~g~~S~~-v~~~T~  100 (102)
T d1x5za1          73 NSLYYFRLAARSPQGLGASTAE-ISARTM  100 (102)
T ss_dssp             TCEEEECEEEECSSCEEEECCC-EEEECC
T ss_pred             CCEEEEEEEEEcCCCEeCCCCC-EEEEcC
Confidence            9999999999999999999865 446554

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-15  Score=129.76  Aligned_cols=178  Identities=13%  Similarity=0.061  Sum_probs=77.5

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      .|. +|.++.+...+.++|.|+|++|...    +|.|.+|.|+|.........       ..........+.+++.|.++
T Consensus         2 ~Ps-~P~~~~~~~~s~~si~vsW~pP~~~----ng~i~~Y~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~y~~~   69 (196)
T d2dtge2           2 NPS-VPLDPISVSNSSSQIILKWKPPSDP----NGNITHYLVFWERQAEDSEL-------FELDYCLKGLKLPSRTWSPP   69 (196)
T ss_dssp             CCC-CCEEEEEEECSSSCEEEEEECCCCS----SSSCSEEECCEEEECCCCSC-------TTCSSSCSCCCCCC------
T ss_pred             cCc-CCcCCEEEeccCCEEEEEEECCCCC----CCcEEEEEEEEEcCCCCCce-------eEEeeEEeccccceeEEEEE
Confidence            355 8999999999999999999998754    37799999998776554321       11121233456788899999


Q ss_pred             EEEeeCCCCCCCCccEEEeecCCCC------CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc
Q psy12061        469 VMAYNNAGEGPESERYLERTYRKAP------QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR  542 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~~~~p------~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~  542 (626)
                      |.|.+..+.+..+....+.+....+      ...+..+.+.......+.+.|..  +.........|.+.+...+..   
T Consensus        70 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---  144 (196)
T d2dtge2          70 FESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV--PRPSRKRRSLGDVGNAGNNEE---  144 (196)
T ss_dssp             ----------------------------------------------------------------------------C---
T ss_pred             EEEEcCCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccC--cCCCccceEEEEEEeecCCCc---
Confidence            9999988876554433333322211      11333444554555666677763  222222222222222211111   


Q ss_pred             ccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCCC
Q psy12061        543 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS  584 (626)
Q Consensus       543 ~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~  584 (626)
                       ........+.+++.|.+|.|++.|.|+|+|+|.+|.|..++
T Consensus       145 -~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s  185 (196)
T d2dtge2         145 -HRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCS  185 (196)
T ss_dssp             -CSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBC
T ss_pred             -cEEEEeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCcc
Confidence             22334455778999999999999999999999999987654

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=107.92  Aligned_cols=94  Identities=27%  Similarity=0.476  Sum_probs=77.0

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      +| .+|..+++...+.+++.|.|+  +|.+.+|.|.+|+|+|+..+....   .........+.++|.+|.|++.|.|+|
T Consensus         3 ~P-~~p~~~~~~~~s~~si~v~W~--~P~~~~g~i~~Y~v~y~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V   76 (98)
T d1x5la1           3 AP-SQVVVIRQERAGQTSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEMQ---SYSTLKAVTTRATVSGLKPGTRYVFQV   76 (98)
T ss_dssp             CC-CCCCCEECSCBCSSCEEEEEC--CCSCCCSCCCEEEEEEEESSSCCS---SCEEEEESSSEEEECSCCTTCEEEECE
T ss_pred             CC-CCCCceEEEeccCCEEEEEEE--CCCCCCCCEEEEEEEeecccccce---eeEEecCCceEEEECCCCCCCEEEEEE
Confidence            45 478899999999999999999  677788999999999887654422   223344567899999999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEeec
Q psy12061        572 LAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       572 ~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      +|+|..|.|++|.+ +.|+|.
T Consensus        77 ~a~n~~G~g~~S~~-v~~~T~   96 (98)
T d1x5la1          77 RARTSAGCGRFSQA-MEVETG   96 (98)
T ss_dssp             EEEETTEECCCCCC-EEEECC
T ss_pred             EEEcCCCCcCCCCC-EEEEcC
Confidence            99999999999965 557665

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=110.38  Aligned_cols=100  Identities=18%  Similarity=0.219  Sum_probs=81.2

Q ss_pred             EeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCc
Q psy12061        486 ERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK  565 (626)
Q Consensus       486 ~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~  565 (626)
                      |+|....| .+|.++++...+.+++.|+|.  +|.+++++|.+|.|+++..+...   ..........+.+.+.+|.|++
T Consensus         4 f~T~~~~P-~~P~~~~~~~~~~~sv~l~W~--pp~~~~~~i~~Y~i~~~~~~~~~---~~~~~~~~~~~~~~~~~L~p~t   77 (105)
T d1x3da1           4 FTTLSCEP-DIPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVLEWDEGKGNG---EFCQCYMGSQKQFKITKLSPAM   77 (105)
T ss_dssp             CCCCCSCC-CCCCCCEEEEEETTEEEEECC--CCCCCSSCEEEEEEEECTTTSSS---CCEEEEEESCSEEEEESCCTTC
T ss_pred             EECCCCCC-cCCCCCEEEEccCCEEEEEEE--CCCCCcCccEEEEEEEecCCCcc---eeEEEecCCccEEEecCCcCCc
Confidence            66777666 589999999999999999999  67778899999999876444332   3344455677899999999999


Q ss_pred             eEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        566 RYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       566 ~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      .|.|+|+|+|..|.|++|+++ .+.|.
T Consensus        78 ~Y~frV~A~N~~G~s~~S~~~-~~~T~  103 (105)
T d1x3da1          78 GCKFRLSARNDYGTSGFSEEV-LYYTS  103 (105)
T ss_dssp             EEEEECCEEESSCBCCCCCCE-EEECS
T ss_pred             EEEEEEEEECCCeEcCCCCcE-EEECC
Confidence            999999999999999999765 45543

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-14  Score=106.31  Aligned_cols=91  Identities=16%  Similarity=0.204  Sum_probs=75.5

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .+|.++.+...+.+++.|.|+  +|.+++++|.+|.|+|+..++...   .......+.+.+.+.+|.|++.|.|+|+|+
T Consensus         2 ~~P~~~~~~~~~~~sv~l~W~--~p~~~~~~I~~Y~i~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   76 (93)
T d2vkwa2           2 SAPKLEGQMGEDGNSIKVNLI--KQDDGGSPIRHYLVRYRALSSEWK---PEIRLPSGSDHVMLKSLDWNAEYEVYVVAE   76 (93)
T ss_dssp             CCCEEEEEECTTSSCEEEEEE--CCCCTTSCCCEEEEEEEETTSCCC---CCEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCccCEeEEcCCCEEEEEee--CCCCCcCceEEEEEEeeecCccee---eeeeccCCceEEEEeccccceEEEEEEEEE
Confidence            478899999899999999999  677888999999999987665432   233456678899999999999999999999


Q ss_pred             ecCCCCCCCCCcEEEeec
Q psy12061        575 SNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       575 ~~~G~g~~s~~~~~~~~~  592 (626)
                      |..|.|++|.  +.|+|.
T Consensus        77 N~~G~s~ps~--~~~~T~   92 (93)
T d2vkwa2          77 NQQGKSKAAH--FVFRTA   92 (93)
T ss_dssp             ETTEECCCEE--EEEECC
T ss_pred             cCCCCcCCEe--EEEEec
Confidence            9999999884  446553

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.3e-14  Score=106.08  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      |.+....|....+.+|+++.|.|.+.+ .|.|  .+.|+|++..+..        .+....++.|.|.+++..|+|.|+|
T Consensus         2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~--~v~W~k~~~~~~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C   71 (89)
T d1gl4b_           2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAY--TLVWTRLHNGKLP--------SRAMDFNGILTIRNVQPSDAGTYVC   71 (89)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCC--EEEEEEGGGBCCC--------TTEEEETTEEEECSCCGGGCEEEEE
T ss_pred             CEEEEcCCCeEEEeCCCcEEEEEEccCCCCCC--EEEEecCCceeec--------cccEeeceEEEEecCCcccCEEEEE
Confidence            344455678899999999999999984 5554  5699999887754        2344567899999999999999999


Q ss_pred             EEEeCCCceEEEEEEEEe
Q psy12061        160 VVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       160 ~a~n~~g~~~~~~~l~v~  177 (626)
                      .|.|..|..+..+.|.|+
T Consensus        72 ~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          72 TGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             EEECSSCEEEEEEEEEEC
T ss_pred             EEEECCCEEEEEEEEEEC
Confidence            999999999999998874

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.2e-15  Score=110.89  Aligned_cols=80  Identities=21%  Similarity=0.253  Sum_probs=69.0

Q ss_pred             CCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc----C----CcEEEccCCCCCCEEEEEEEEcCCCCceeeEE
Q psy12061          3 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----N----GNLLISPVSRDDSGIYSCTATNVHGMDESKGR   74 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~----~----g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   74 (626)
                      ..++...|.|.+.|.|.|+|.|+|||.+|..+.+..+..    +    +.|.|.+++.+|+|.|+|.|+|..|.....+.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            457788899999999999999999999998776655432    1    25999999999999999999999999999999


Q ss_pred             EEEEeCCc
Q psy12061         75 LIVLHGPS   82 (626)
Q Consensus        75 l~v~~~p~   82 (626)
                      |.|...|.
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            98877664

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.2e-15  Score=108.89  Aligned_cols=65  Identities=26%  Similarity=0.317  Sum_probs=58.0

Q ss_pred             CCCCceEEEEeeeCCCCC-CeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      +.+|++++|.|.+.|.|+ ++|+|+|+|.++....+.....+++|.|.+++.+|+|.|+|.|.|..
T Consensus        18 ~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             EeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            468999999999999765 59999999999988888777778899999999999999999998754

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.7e-15  Score=113.10  Aligned_cols=101  Identities=19%  Similarity=0.216  Sum_probs=80.3

Q ss_pred             cCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc---cceeeecCccceEEecCCCCCc
Q psy12061        489 YRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA---NDTIIPVGNTLDADIVDLSPGK  565 (626)
Q Consensus       489 ~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~~  565 (626)
                      .+++| ++|.++++...+.+++.|+|+  +|.++++.|.+|.|+|+.........   ..........+.+.+.+|+|++
T Consensus         7 p~~~P-~~P~~~~~~~~~~~sv~l~W~--pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t   83 (111)
T d1wisa1           7 PPELP-GPPTNLGISNIGPRSVTLQFR--PGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFT   83 (111)
T ss_dssp             CCCCC-CCCEEEEEESCCSSCEEEEEE--CCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTS
T ss_pred             CCCCC-cCCCCCEEEEcCCCEEEEEEe--CCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCC
Confidence            44555 489999999889999999999  67788999999999887654432221   2233345677889999999999


Q ss_pred             eEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        566 RYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       566 ~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      .|.|+|+|+|..|.|++|+++..++|.
T Consensus        84 ~Y~frV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          84 CYSFRMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             EECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred             EEEEEEEEEcCCcCCCCcCCCCCEEcc
Confidence            999999999999999999887666653

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=109.97  Aligned_cols=95  Identities=19%  Similarity=0.285  Sum_probs=76.5

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc---cceeeecCccceEEecCCCCCceEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA---NDTIIPVGNTLDADIVDLSPGKRYH  568 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~~~Y~  568 (626)
                      +|+ +|.++++...+.+++.|+|+  +|.+.+|.+.+|.|+|+.........   ..........+++.+.+|+|++.|.
T Consensus         2 ~P~-~P~~~~~~~~~~~sv~v~W~--~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   78 (103)
T d1qg3a2           2 VPS-EPGRLAFNVVSSTVTQLSWA--EPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR   78 (103)
T ss_dssp             CCC-CCCCCEEEEEETTEEEEECC--CCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEE
T ss_pred             cCc-cCCCcEEEEecCCEEEEEEE--ECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEE
Confidence            454 88999999999999999999  77888999999999988765442211   1223345667889999999999999


Q ss_pred             EEEEEEecCCCCCCCCCcEEE
Q psy12061        569 MRVLAFSNGGDGRMSSPAITF  589 (626)
Q Consensus       569 ~~V~a~~~~G~g~~s~~~~~~  589 (626)
                      |+|+|+|..|.|++++.++.+
T Consensus        79 ~~V~A~n~~G~g~~s~~~v~~   99 (103)
T d1qg3a2          79 YTVKARNGAGWGPEREAIINL   99 (103)
T ss_dssp             EEEEEEETTEECCCEEEEECG
T ss_pred             EEEEEEcCCccCCCcccccEE
Confidence            999999999999988655433

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-14  Score=104.41  Aligned_cols=70  Identities=20%  Similarity=0.452  Sum_probs=58.3

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v   77 (626)
                      +.+|+++.|.|.+.|.|.| +|.|+|||.+|....      .+.+.|.....+|+|.|+|.|.|..|...+ .+.|.|
T Consensus        13 v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          13 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             ECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------CcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            5789999999999999998 999999999996542      244667777788999999999999997544 577766

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=111.47  Aligned_cols=105  Identities=24%  Similarity=0.292  Sum_probs=85.5

Q ss_pred             EccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE---EEEecCccceEEEeCCc
Q psy12061        384 FSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV---YYLSRTTRNWALIVGLQ  460 (626)
Q Consensus       384 ~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~~~~~i~~L~  460 (626)
                      .|.+++|..+|.++++...+.+++.|+|++|.....  ++.+.+|.|+|+..+.......   .........++.|.+|+
T Consensus         2 ~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~--~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~   79 (109)
T d1va9a1           2 STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQ--NGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLK   79 (109)
T ss_dssp             CSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTT--CSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCC
T ss_pred             CCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCC--CCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCC
Confidence            477889988999999999999999999998865433  3789999999987766543221   11223455679999999


Q ss_pred             cCceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        461 PDTKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       461 p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      |++.|.|+|+|+|..|.|++|..+.++|.+
T Consensus        80 p~t~Y~~~V~a~n~~G~g~~S~~v~~~T~e  109 (109)
T d1va9a1          80 KFAQYGVVVQAFNRAGTGPSSSEINATTLE  109 (109)
T ss_dssp             SSCCEEEEEEEEETTEECCCCCCEECCCCS
T ss_pred             cceEEEEEEEEEcCCcCCCCCCCEEEEcCC
Confidence            999999999999999999999999988864

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.6e-14  Score=112.55  Aligned_cols=109  Identities=33%  Similarity=0.525  Sum_probs=88.3

Q ss_pred             EccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc------eEEEEecCccceEEEe
Q psy12061        384 FSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET------AVYYLSRTTRNWALIV  457 (626)
Q Consensus       384 ~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~------~~~~~~~~~~~~~~i~  457 (626)
                      .+.+++|..+|.++++...+.+++.|+|+++.....  ++.+.+|.+.++........      ...........++.|.
T Consensus         8 ~s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   85 (125)
T d1uena_           8 HSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSI--RGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLP   85 (125)
T ss_dssp             CSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHH--CSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEE
T ss_pred             cccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCC--CcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEEC
Confidence            355789988999999999999999999998865433  37799999999776544221      1223345556779999


Q ss_pred             CCccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        458 GLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       458 ~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      +|.|++.|.|+|+|.|..|.|++|..+.++|.++.|+
T Consensus        86 ~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  122 (125)
T d1uena_          86 GLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP  122 (125)
T ss_dssp             SCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCCSS
T ss_pred             CCCCCCEEEEEEEEEeCCcccCCCCCEEEECCCCCcC
Confidence            9999999999999999999999999999999988765

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7e-16  Score=109.72  Aligned_cols=68  Identities=28%  Similarity=0.339  Sum_probs=58.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~   79 (626)
                      +.+|+++.|.|.+.|+|.|+|.|+|||..+....          .+.+++.+|+|.|+|.|.|..|+....+.|.|..
T Consensus        16 ~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~----------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          16 WPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             EETTCEECCCCCCEEESCCEEEEEETTTEECCTT----------SCEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EeCCCEEEEEEEEeEcCccEEEEEEeeccceeee----------eeeccccCCCCEEEEEEEcCCCEEEEEEEEEEEC
Confidence            4589999999999999999999999998765432          3456788999999999999999998888998853

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.6e-14  Score=102.16  Aligned_cols=83  Identities=18%  Similarity=0.324  Sum_probs=66.5

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.|.. .|.+..+.+|+++.|.|.+.|.|.| ++|.|+|||..+....            .+.+.|.....+|+|.|+|.
T Consensus         2 P~f~~-~P~~~~v~~G~~~~l~C~~~g~P~P-~~i~W~k~g~~i~~~~------------~~~~~l~~~~~~d~G~Y~C~   67 (85)
T d1rhfa2           2 PFFTV-EPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPA------------PSPSVLNVTGVTQSTMFSCE   67 (85)
T ss_dssp             CEEEE-CCCCEEECTTCCEEEEEEEECSSSC-CEEEEEETTEECSCSE------------ESSEEEEECCCSSCEEEEEE
T ss_pred             CcEEE-eCCcEEEcCCCEEEEEEEEecCCcc-eEEEEEECCEECCCCC------------CcceEEecCCccccEEEEEE
Confidence            55555 4788999999999999999999987 3679999999986541            23456777777899999999


Q ss_pred             EEeCCCce-EEEEEEEEe
Q psy12061        161 VKSTVGKI-STKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~-~~~~~l~v~  177 (626)
                      |.|..|.. +..+.|.|+
T Consensus        68 A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          68 AHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EEcCCCcEEEEEEEEEEC
Confidence            99999965 456777764

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-14  Score=107.35  Aligned_cols=95  Identities=24%  Similarity=0.372  Sum_probs=78.3

Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEE
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      .+|. +|.++++...+.++|.|+|++|...    +|.|.+|.|+|+..+.......    .....++.+.+|+|++.|.|
T Consensus         9 ~vP~-~P~~l~v~~~s~~si~l~W~~P~~~----~g~i~~Y~v~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y~~   79 (103)
T d1x5ga1           9 QLPG-PAPNLRAYAASPTSITVTWETPVSG----NGEIQNYKLYYMEKGTDKEQDV----DVSSHSYTINGLKKYTEYSF   79 (103)
T ss_dssp             SCCC-CCSSCEEEEEETTEEEEECCCCSCC----SSCCSEEEEEEEETTCCCCCCE----EECSSEEEECSCCTTCEEEE
T ss_pred             CCcc-cCCCcEEEEccCCEEEEEEECCcCC----CccEEEEEEEEEeCCCceeEEE----eccccEEecCCCCCCCEEEE
Confidence            4565 8889999999999999999987654    3779999999988766544322    23445699999999999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecCC
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRK  491 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~  491 (626)
                      +|+|+|..|.|++|..+.++|.++
T Consensus        80 ~V~A~n~~G~g~~S~~v~v~T~eD  103 (103)
T d1x5ga1          80 RVVAYNKHGPGVSTPDVAVRTLSD  103 (103)
T ss_dssp             EEEEECSSCCCCBCCCCCEECCCS
T ss_pred             EEEEEcCCcCcCCCCCEEEEcCCC
Confidence            999999999999999888888753

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=108.17  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             CCCCceEEEEe------eeCCCCCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFC------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C------~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      +..|+..+|.|      .+.|+|.|+|.|+|||++|..+++..+..++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            35799999999      5689999999999999999887777777888999999999999999999999887643

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-14  Score=114.31  Aligned_cols=107  Identities=21%  Similarity=0.367  Sum_probs=84.4

Q ss_pred             EeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc-----cceeeecCccceEEecC
Q psy12061        486 ERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA-----NDTIIPVGNTLDADIVD  560 (626)
Q Consensus       486 ~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~  560 (626)
                      .+|.+++|+.+|.++++...+.+++.|+|++++....++.+.+|.+.|+.........     ........+.+++.|.+
T Consensus         7 ~~s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (125)
T d1uena_           7 GHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPG   86 (125)
T ss_dssp             CCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEES
T ss_pred             ccccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECC
Confidence            4567889988999999999999999999995443456789999999887765432211     12234566778999999


Q ss_pred             CCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        561 LSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       561 L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      |.|++.|.|+|+|+|..|.|++|++. .|+|.+
T Consensus        87 L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~~  118 (125)
T d1uena_          87 LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPE  118 (125)
T ss_dssp             CCSSCEEEEEEEEEESSCEEEECCCE-EEECCC
T ss_pred             CCCCCEEEEEEEEEeCCcccCCCCCE-EEECCC
Confidence            99999999999999999999999765 466654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.53  E-value=2.5e-14  Score=107.32  Aligned_cols=91  Identities=13%  Similarity=0.277  Sum_probs=74.3

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe---cCCeEEEeecCCCCCEe
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFADAGE  156 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~  156 (626)
                      +|.|. ..|.+..+.+|+++.|.|.+.+.|.|.  +.|+|||..+.....     .++..   ....|.|.+++..|+|.
T Consensus         8 ~P~f~-~~~~~~~v~~G~~~~l~C~~~g~P~p~--v~W~k~~~~i~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~   79 (102)
T d1fhga_           8 KPYFT-KTILDMEVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRH-----FQIDYDEEGNCSLTISEVCGDDDAK   79 (102)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCCSSS-----EEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             CCeEE-cCCCcEEEecCCcEEEEEEEEeccCCe--EEEEeeeccccceee-----EeEEEecCceeeeEecCCCHHhCEE
Confidence            45554 467889999999999999999998874  589999999976531     12222   13479999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |+|.|.|..|..+.++.|.|+.
T Consensus        80 Y~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          80 YTCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCcEEEEEEEEEEEE
Confidence            9999999999999999999864

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=2.1e-14  Score=106.82  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             eCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec--CCeEEEeecCCCCCEe
Q psy12061         79 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID--GGLLEITNASFADAGE  156 (626)
Q Consensus        79 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~  156 (626)
                      .+|.+.. .+.+..+.+|++++|.|.+.|.|.|.  +.|+||+.++..+.-    .......  ...|.|.+++..|+|.
T Consensus         3 eaP~f~~-~~~~~~v~~g~~v~l~c~v~g~P~p~--v~W~k~~~~i~~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~   75 (98)
T d1g1ca_           3 EAPKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPE--CEWYKNGVKIERSDR----IYWYWPEDNVCELVIRDVTGEDSAS   75 (98)
T ss_dssp             EEEEEEE-CCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCCCSS----EEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             cCCeEec-CCCcEEEcCCCcEEEEEEEEEecCCe--EEEEeCceEEeeeee----eEEEeccceEEEEEeccCccccCEE
Confidence            3566654 56889999999999999999999874  589999999976531    0111112  2379999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEG  178 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~  178 (626)
                      |+|.|.|..|..+..+.|.|+.
T Consensus        76 Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          76 IMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCcEEEEEEEEEEEE
Confidence            9999999999999999999875

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=110.34  Aligned_cols=101  Identities=19%  Similarity=0.343  Sum_probs=73.4

Q ss_pred             EEEeecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCC
Q psy12061        484 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP  563 (626)
Q Consensus       484 ~~~~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  563 (626)
                      +.+++.+.+|. .| .+.+...+.+++.|+|+  +|.+++++|.+|.|+|+..+..+.  ..........+.+.|.+|.|
T Consensus         5 l~v~~~P~~P~-~p-~~~~~~~~~~sv~l~W~--~P~~~~~~I~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p   78 (108)
T d1wf5a1           5 LRVRQLPHAPE-HP-VATLSTVERRAINLTWT--KPFDGNSPLIRYILEMSENNAPWT--VLLASVDPKATSVTVKGLVP   78 (108)
T ss_dssp             SSCCCCCCCCS-SC-EEEECSSSTTEEEEECC--CCCCCSSCEEEEEEEEECTTCCCE--EEESSCCTTCCEEEEESCCT
T ss_pred             cEEecCCCCCC-CC-EEEEEeccCCEEEEEEE--CCCCCCCccEEEEEEEEeccCCce--EEeeeecCCccEEEECCCCC
Confidence            44445444443 33 24455578889999999  667788999999999876554422  11223345678899999999


Q ss_pred             CceEEEEEEEEecCCCCCCCCCcEEEe
Q psy12061        564 GKRYHMRVLAFSNGGDGRMSSPAITFQ  590 (626)
Q Consensus       564 ~~~Y~~~V~a~~~~G~g~~s~~~~~~~  590 (626)
                      ++.|.|+|+|+|..|.|++|+++...+
T Consensus        79 ~t~Y~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          79 ARSYQFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             TCEEEEEEEEEESSCEEEECCCCSCEE
T ss_pred             CCEEEEEEEEEcCCcCCCCcCCcCCEE
Confidence            999999999999999999997654443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.5e-14  Score=106.92  Aligned_cols=95  Identities=20%  Similarity=0.262  Sum_probs=76.1

Q ss_pred             CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       494 ~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      |.+|.++.+..++.+++.|+|++ +..+.++.+.+|.|+|+..+....  ..........+.+.|.+|.|++.|.|+|+|
T Consensus        11 P~~P~~l~~~~~~~~sv~lsW~~-P~~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A   87 (107)
T d1x5fa1          11 PSAPRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIARE--RVENTSHPGEMQVTIQNLMPATVYIFRVMA   87 (107)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEEC-CSSCSSCCSSEEEEEEEETTCCCC--EEEECSSTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CcCCCccEEEEecCCEEEEEEEC-CccCCCCceEEEEEEEEeCCCCce--EEEEEeCCCccEEEecCCCCCCEEEEEEEE
Confidence            35899999999999999999995 335678899999998876555432  223344567789999999999999999999


Q ss_pred             EecCCCCCCCCCcEEEeec
Q psy12061        574 FSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       574 ~~~~G~g~~s~~~~~~~~~  592 (626)
                      +|..|.|++|.++ .+++.
T Consensus        88 ~n~~G~g~~S~~i-~v~T~  105 (107)
T d1x5fa1          88 QNKHGSGESSAPL-RVETQ  105 (107)
T ss_dssp             ECSSCEEEECCCE-EEECC
T ss_pred             EeCCCCcCCCCCE-EEECC
Confidence            9999999999654 45554

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.6e-14  Score=102.98  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      |+.+|.+|++...+.+++.|+|+++.+ ..++.+.+|.|.++..+..     ...  ....+++.|.+|.|++.|.|+|+
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~-~~~~~~i~Y~i~~~~~~~~-----~~~--~~~~t~~~i~~L~p~t~Y~~rV~   73 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRP-RNPGGNLSYELHVLNQDEE-----WHQ--MVLEPRVLLTKLQPDTTYIVRVR   73 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCS-SCCSSCCEEEEEEECSSCE-----EEE--EESSSEEEEESCCSSCEEEEEEE
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccC-CCCCcEEEEEEEEecCCce-----EEE--eeccCEEEECCCCCCCEEEEEEE
Confidence            556788999999999999999996433 3456667899988755432     111  12467899999999999999999


Q ss_pred             EEecCCCCCCCCCcEEEeec
Q psy12061        573 AFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       573 a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |+|..|.|++|++ +.++|.
T Consensus        74 A~n~~G~g~~S~~-~~~~T~   92 (94)
T d1x5aa1          74 TLTPLGPGPFSPD-HEFRTS   92 (94)
T ss_dssp             EECSSSCCCCCCC-EEEECC
T ss_pred             EEcCCcCcCCCCC-EEEEeC
Confidence            9999999999954 556664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=109.82  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             CceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc--cC-----CcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--EN-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~--~~-----g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +....|.|.+.|.|.|+|.|+|||++|..+.++.+.  .+     +.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            445567889999999999999999999877665542  12     25999999999999999999999999999999988


Q ss_pred             EeCC
Q psy12061         78 LHGP   81 (626)
Q Consensus        78 ~~~p   81 (626)
                      ..+|
T Consensus        97 ~~~P  100 (105)
T d1wwca_          97 LKEP  100 (105)
T ss_dssp             SCCC
T ss_pred             EeCC
Confidence            7665

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.5e-14  Score=104.66  Aligned_cols=89  Identities=24%  Similarity=0.303  Sum_probs=72.0

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.++.+...+.+++.|.|+  +|.+.++.+.+|.|+|...+..     .........+.+.|.+|.|++.|.|+|+|+|
T Consensus         3 ~P~~~~v~~~s~~si~l~W~--~p~~~~~~i~~Y~v~~~~~~~~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   75 (93)
T d1x4xa1           3 QCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGS-----MQICYCGPGLSYEIKGLSPATTYYCRVQALS   75 (93)
T ss_dssp             CCCCCCCEEEETTEEEEECC--CCSCSSSCCCEEEEEEESSTTS-----CCEEEEESCSEEEEESCCSSCEEEEEEEEEC
T ss_pred             CCCCCEEEEeCCCeEEEEEE--ecccCCCeeEEEEEEEccCCCc-----ceEeecCCccEEEEcccceeeEEEEEEEEEE
Confidence            55667777788999999999  6777788999999988755443     2234456788899999999999999999999


Q ss_pred             cCCCCCCCCCcEEEeec
Q psy12061        576 NGGDGRMSSPAITFQMG  592 (626)
Q Consensus       576 ~~G~g~~s~~~~~~~~~  592 (626)
                      ..|.|++|+. +.++|.
T Consensus        76 ~~G~s~~S~~-~~~~Tp   91 (93)
T d1x4xa1          76 VVGAGPFSEV-VACVTP   91 (93)
T ss_dssp             SSCCCCBCCC-EEEECC
T ss_pred             CCcCcCCCCc-EEEEeC
Confidence            9999999954 556654

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1.7e-14  Score=109.46  Aligned_cols=94  Identities=22%  Similarity=0.430  Sum_probs=67.9

Q ss_pred             CceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc----------ccceeeecCccceEEecCCCCCce
Q psy12061        497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR----------ANDTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       497 p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      |..+.+..++.+++.|+|.  +|.+++++|++|.|+|+..+.....          ...........+.++|.+|+|++.
T Consensus         3 P~~p~v~~~~~~sv~l~W~--~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           3 PTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCEEEECC---EEEEEE--EECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             CcCCEEEEEECCEEEEEEE--eCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            4455677789999999999  5677889999999998765432110          011112234567899999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        567 YHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       567 Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      |.|+|+|.|..|.|++|.++..|.+.
T Consensus        81 Y~frV~A~N~~G~s~~S~~s~~~~~~  106 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTSAKFYLQ  106 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCCCCEEEC
T ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEcC
Confidence            99999999999999999887777664

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.3e-14  Score=104.43  Aligned_cols=91  Identities=23%  Similarity=0.379  Sum_probs=74.1

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|..+++...+.+++.|+|+  +|.+.+|.|.+|.|+|+..+....   .........+.+.+.+|+|++.|.|+|+|+|
T Consensus         3 ~~~~l~~~~~t~~si~l~W~--~p~~~~g~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   77 (95)
T d2djsa1           3 TVPIMHQVSATMRSITLSWP--QPEQPNGIILDYEIRYYEKEHNEF---NSSMARSQTNTARIDGLRPGMVYVVQVRART   77 (95)
T ss_dssp             CCSCCEEEEECSSEEEEECC--CCSCCSSCEEEEEEEEEETTSCST---TCEEEEESSSEEEEESCCTTCEEEEEEEEEE
T ss_pred             CCCccEEEeecCCEEEEEEE--ECCCCCcceEEeeeeeeeeccCcc---eeEeecCCccEEEEeecCCccEEEEEEEEEc
Confidence            34478899999999999999  677889999999999887655422   2233455778899999999999999999999


Q ss_pred             cCCCCCCCCCcEEEeec
Q psy12061        576 NGGDGRMSSPAITFQMG  592 (626)
Q Consensus       576 ~~G~g~~s~~~~~~~~~  592 (626)
                      ..|.|++|+++ .|+|.
T Consensus        78 ~~G~g~~S~~~-~~~T~   93 (95)
T d2djsa1          78 VAGYGKFSGKM-CFQTL   93 (95)
T ss_dssp             SSCEEEECCCE-EEECC
T ss_pred             CCCCCCCCCCE-EEEeC
Confidence            99999999664 46654

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.4e-14  Score=107.85  Aligned_cols=108  Identities=19%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             CCCCCCccEEEEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccc
Q psy12061        373 GPGPESEVVTIFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN  452 (626)
Q Consensus       373 g~~~~s~~~~~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~  452 (626)
                      |.|.+|..+.++|.+..|..+|.++ +...+.+++.|+|+++.....  +|.|.+|.|+|+..+......   . . ...
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~-~~~~~~~~i~v~W~~~~~~~~--~g~i~~Y~v~y~~~~~~~~~~---~-~-~~~   72 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMEN--ESEVTGYKVFYRTSSQNNVQV---L-N-TNK   72 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSC-BCCEETTEEEEECCCCCCCSS--SCCEEEEEEEEEESSCSSCEE---E-E-ESS
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcce-EEeecCCEEEEEEeecccccC--CCceeEEEEEEEecCCCceee---e-e-cee
Confidence            6778899999999999998777665 455778999999998654433  488999999998766543321   1 1 223


Q ss_pred             eEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEee
Q psy12061        453 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT  488 (626)
Q Consensus       453 ~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t  488 (626)
                      .+.+.+|.+++.|.|+|+|+|..|.|++|+.+.+.+
T Consensus        73 ~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~  108 (117)
T d1wj3a_          73 TSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             SEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECC
T ss_pred             eEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEec
Confidence            477889999999999999999999999998876633

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.1e-14  Score=108.35  Aligned_cols=79  Identities=18%  Similarity=0.229  Sum_probs=64.7

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-C---------CcEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-N---------GNLLISPVSRDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~---------g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      +++...|.|.+.|.|.|.|.|+|||++|..+.++.... +         ..|.|.+++.+|+|.|+|.|.|..|...+.+
T Consensus        14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            33444455589999999999999999998766554421 1         2499999999999999999999999999999


Q ss_pred             EEEEEeCCc
Q psy12061         74 RLIVLHGPS   82 (626)
Q Consensus        74 ~l~v~~~p~   82 (626)
                      .|.|..+|.
T Consensus        94 ~v~v~~~P~  102 (107)
T d1he7a_          94 MAAFMDNPF  102 (107)
T ss_dssp             EECCCSCTT
T ss_pred             EEEEEcCCC
Confidence            999987774

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-14  Score=104.03  Aligned_cols=76  Identities=26%  Similarity=0.319  Sum_probs=62.8

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   79 (626)
                      |.+|+.++|.|.+.+. |++++.|+|||..+....     .++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus        12 V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          12 VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK   86 (89)
T ss_dssp             EETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEe
Confidence            5799999999999776 455999999999886432     245699999999999999999999887754 457899988


Q ss_pred             CCc
Q psy12061         80 GPS   82 (626)
Q Consensus        80 ~p~   82 (626)
                      +|+
T Consensus        87 ~Pr   89 (89)
T d1f2qa2          87 APR   89 (89)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            763

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=103.56  Aligned_cols=88  Identities=20%  Similarity=0.302  Sum_probs=70.1

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .|.++..++....+..|+++.|.|.+. +.|.|  +++|++++.++..        .+.....+.|.|.+++.+|+|.|+
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p--~v~W~~~~~~~~~--------~~~~~~~~~L~i~~v~~~D~G~Y~   71 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGA--SVQWRGLDTSLGA--------VQSDTGRSVLTVRNASLSAAGTRV   71 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTC--EEEEESSTTTTCC--------EEEESSEEEEEECSCCGGGCEEEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCcc--EEEEEEeeeeeee--------eeccCceeeEEcCccChhhCCcEE
Confidence            355666566678899999999999885 66665  5699997766532        223335578999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEe
Q psy12061        159 CVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~  177 (626)
                      |.|.|..|..+.++.|.|.
T Consensus        72 C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          72 CVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEEEEEEC
Confidence            9999999999999999874

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9e-16  Score=112.77  Aligned_cols=76  Identities=18%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEE-EccCCcEEEccCCCCCCE-EEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK-IFENGNLLISPVSRDDSG-IYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~-~~~~g~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+++.|.|.+.|.|.|+|.|+|++.++....+.. ...+++|.|.+++.+|+| .|+|.|.|..|.....+.|.|
T Consensus        14 v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          14 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             EeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            6799999999999999999999999998876432222 223347999999999999 699999999999888887765

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.3e-14  Score=106.90  Aligned_cols=102  Identities=25%  Similarity=0.294  Sum_probs=76.5

Q ss_pred             EEEeecCCCCCCCCce-EEEeeeCCCEEEEEEeecCCCC-CCCceeeEEEEEEEeccCCccccceeeecCccceEEecCC
Q psy12061        484 YLERTYRKAPQKPPSA-VHIKGINPTTVHVTWRYVSPSF-EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDL  561 (626)
Q Consensus       484 ~~~~t~~~~p~~~p~~-l~~~~~~~~~~~l~W~~~~~~~-~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  561 (626)
                      +.++|.++.|. +|.. +.+..++.+++.|+|+  +|.+ ++..+.+|.++++..+...   ..........+.+.+.+|
T Consensus         2 v~~~T~~~~P~-~P~~~~~~~~~~~~sv~l~W~--~P~~~~g~~~~~y~v~~~~~~~~~---~~~~~~~~~~~~~~i~~L   75 (107)
T d2crma1           2 VEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWD--PPKDNGGATINKYVVEMAEGSNGN---KWEMIYSGATREHLCDRL   75 (107)
T ss_dssp             CSCCSCCCCCC-CCCCCEEEEEEETTEEEEECC--CCTTCCSSCCCEEEEEEEESSSSC---CCEEEECSSCSEEEECSC
T ss_pred             EEEECCCCCCc-CCCCCEEEeeecCCEEEEEEE--ECccCCcceEEEEEEEEEeecCCC---cEEEeecCCccEEEEecc
Confidence            34678888776 4545 4455678899999999  4443 4457899999876655432   234455667889999999


Q ss_pred             CCCceEEEEEEEEecCCCCCCCCCcEEEeec
Q psy12061        562 SPGKRYHMRVLAFSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       562 ~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~  592 (626)
                      +|++.|.|+|+|+|..|.|++|+++. ++++
T Consensus        76 ~p~t~Y~~rV~A~n~~G~s~~S~~v~-v~Tp  105 (107)
T d2crma1          76 NPGCFYRLRVYCISDGGQSAVSESLL-VQTP  105 (107)
T ss_dssp             CTTSCEEEEEEEEETTEECCCCCCCC-CCCC
T ss_pred             CCCCEEEEEEEEECCCcCcCCCCcEE-EECC
Confidence            99999999999999999999997653 5443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.5e-14  Score=109.88  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=65.1

Q ss_pred             CCCCceEEEEeeeCCCC---CCeeEEEeCCEEcc---CCCcEEEccC---------CcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAAP---KPKFVWKKDGNIIG---SGGRRKIFEN---------GNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p---~p~i~W~~~~~~i~---~~~~~~~~~~---------g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      |.+|++++|.|.+.|.|   .|+|.|+|++..+.   ...++.+...         ..|.|.+++.+|+|.|+|.|.|..
T Consensus        12 v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   91 (113)
T d2dava1          12 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD   91 (113)
T ss_dssp             EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSS
T ss_pred             EeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCC
Confidence            56899999999999998   58999999875432   2333333211         259999999999999999999999


Q ss_pred             CCceeeEEEEEEeCCc
Q psy12061         67 GMDESKGRLIVLHGPS   82 (626)
Q Consensus        67 g~~~~~~~l~v~~~p~   82 (626)
                      |...+.+.|.|..++.
T Consensus        92 G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          92 KFDSCSFDLEVHESTG  107 (113)
T ss_dssp             CEEEECCEEEEECCCC
T ss_pred             CEEEEEEEEEEEcCCC
Confidence            9999999999976553

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.50  E-value=1.7e-14  Score=106.14  Aligned_cols=90  Identities=21%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEY  157 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y  157 (626)
                      +|.++. ++.++.+.+|+++.|.|.+.|.|.|.  +.|++|+..+.....     ..+..  ....|.|.+++.+|+|.|
T Consensus         2 ~P~i~~-~~~~~~v~~G~~~~l~c~~~g~P~p~--v~W~~~~~~i~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y   73 (93)
T d1wiua_           2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPT--ATWTVGDSGAALAPE-----LLVDAKSSTTSIFFPSAKRADSGNY   73 (93)
T ss_dssp             CCEECC-CCCEEEECSSBCCEEEEEEECCSSCE--EEEECSSSSCBCSTT-----SEEEEETTEEEEECTTBCGGGCEEE
T ss_pred             CCeEEe-CCCcEEEeCCCeEEEEEEEEEecCCe--EEEEeeeeeceeeee-----eeecccccceeeccccccccccEEE
Confidence            455554 67899999999999999999999885  589999998876531     22222  345799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEe
Q psy12061        158 ECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +|.|.|..|..+..+.|.|+
T Consensus        74 ~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          74 KLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEC
Confidence            99999999999999998874

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=3.2e-14  Score=105.40  Aligned_cols=84  Identities=20%  Similarity=0.333  Sum_probs=68.9

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ....+..|+++.|.|.+.|.|.|.  +.|+|||.++.....  ..........+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~--i~W~kng~~l~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPT--MRWLKNGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI   88 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCE--EEEEETTEECCGGGS--TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCE--EEEEECCEeccccCc--eeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE
Confidence            346788999999999999999874  589999999976531  1112233456799999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy12061        169 STKTTVIV  176 (626)
Q Consensus       169 ~~~~~l~v  176 (626)
                      +.++.|.|
T Consensus        89 ~~~~~l~V   96 (97)
T d3dara1          89 NHTYHLDV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99998886

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.50  E-value=9.3e-15  Score=108.00  Aligned_cols=71  Identities=25%  Similarity=0.437  Sum_probs=59.5

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCC-cEEE-ccCCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGG-RRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~-~~~~-~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      +.+|+.++|.|.+.|.|.| .|.|+|||.+|..+. +... ..+++|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus        14 v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~   87 (94)
T d1biha1          14 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR   87 (94)
T ss_dssp             EETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEE
Confidence            5689999999999999876 799999999997543 3333 345689999999999999999999999975543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.5e-14  Score=102.49  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ++..+.+|++++|.|.+.|.|.|.  +.|++++..+..             ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~--i~W~~~~~~~~~-------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~   71 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPS--VQCRSPRGKNIQ-------------GGKTLSVSQLELQDSGTWTCTVLQNQKKV   71 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCE--EEEECTTCCEEE-------------ESSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchh--eEEEeeccccee-------------eeeeeeeeecccccccEEEEEEEeCCCEE
Confidence            355789999999999999999885  489997655432             45689999999999999999999999999


Q ss_pred             EEEEEEEEeCCC
Q psy12061        169 STKTTVIVEGPP  180 (626)
Q Consensus       169 ~~~~~l~v~~~P  180 (626)
                      +..+.|.|...|
T Consensus        72 ~~~~~v~V~~~~   83 (84)
T d2nxyb2          72 EFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEEEECEECCC
T ss_pred             EEEEEEEEEecC
Confidence            999999998766

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=4.7e-15  Score=111.68  Aligned_cols=71  Identities=30%  Similarity=0.390  Sum_probs=59.5

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEcc--CCCcEE-EccCCcEEEccCCCCCCEEEEEEEEcCCCCceee
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--SGGRRK-IFENGNLLISPVSRDDSGIYSCTATNVHGMDESK   72 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~--~~~~~~-~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   72 (626)
                      |.+|+++.|.|.+ .|.|.|.|.|+|||..+.  .+.++. ...+|+|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        16 v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          16 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             EETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             EeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            5789999999998 788999999999998764  334443 4457789999999999999999999998886554

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.3e-14  Score=103.90  Aligned_cols=81  Identities=22%  Similarity=0.451  Sum_probs=63.1

Q ss_pred             eCCCEEEEEEeecCCCCCC-CceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12061        505 INPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       505 ~~~~~~~l~W~~~~~~~~~-~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s  583 (626)
                      ...+++.|+|+  +|...+ ..|++|.|+|+..+..    ..........+++.+.+|.|++.|.|+|+|.|..|.|++|
T Consensus        14 ~~~~sv~l~W~--~P~~~gg~~i~~Y~v~~~~~~~~----~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S   87 (97)
T d2crza1          14 PKAKEIQLRWG--PPLVDGGSPISCYSVEMSPIEKD----EPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFS   87 (97)
T ss_dssp             CCSSEEEEECC--CCSCCTTSCCCEEEEEEECTTSC----CCEEEEEESCSEEEEESCCTTCEEEECCEEECSSCBCCCC
T ss_pred             eeCCEEEEEEe--CCCcCCCCceeEEEEEEEcCcCC----ceeEeecCCceEEEEcCCCCCEEEEEEEEEecCCeEcCCc
Confidence            46789999999  455444 4899999998765544    2233445577889999999999999999999999999999


Q ss_pred             CCcEEEeec
Q psy12061        584 SPAITFQMG  592 (626)
Q Consensus       584 ~~~~~~~~~  592 (626)
                      +++ .+++.
T Consensus        88 ~~~-~~~T~   95 (97)
T d2crza1          88 EKC-DITTA   95 (97)
T ss_dssp             CCE-EEECC
T ss_pred             CCC-eEEeC
Confidence            764 45543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.6e-14  Score=105.31  Aligned_cols=77  Identities=23%  Similarity=0.440  Sum_probs=61.8

Q ss_pred             CCCCceEEEEeeeCCCCC-CeeEEEe-CCEEcc-CCCcEEEccC----CcEEEccCCCCCCEEEEEEEEcCCCCc-eeeE
Q psy12061          2 AGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIG-SGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMD-ESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~-p~i~W~~-~~~~i~-~~~~~~~~~~----g~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~   73 (626)
                      +.+|+++.|.|.+.|.|+ |+|.|+| ||..+. ...++.+...    ++|.|.+++.+|+|.|+|.|.|..|.. .+.+
T Consensus        12 v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv   91 (97)
T d1epfa1          12 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV   91 (97)
T ss_dssp             EETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEE
T ss_pred             EccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEE
Confidence            468999999999999985 7999999 666665 3456665432    369999999999999999999999974 3457


Q ss_pred             EEEEE
Q psy12061         74 RLIVL   78 (626)
Q Consensus        74 ~l~v~   78 (626)
                      .|.|+
T Consensus        92 ~l~V~   96 (97)
T d1epfa1          92 NVKIF   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77774

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=101.63  Aligned_cols=90  Identities=32%  Similarity=0.489  Sum_probs=76.0

Q ss_pred             CCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEE
Q psy12061        392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA  471 (626)
Q Consensus       392 ~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a  471 (626)
                      ++|.++++...+.++|.|+|++|.       +.+.+|.|+|+............  ......+.+.+|+|++.|.|+|+|
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p~-------~~~~~Y~i~y~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A   73 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLL--DSKVPSVELTNLYPYCDYEMKVCA   73 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECCS-------SCCCEEEEEEEETTSCGGGCEEE--EESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CcCCCCEEEEccCCEEEEEEEecC-------CCccceEEeeeeccccccEEEEe--cCCccEEEECCCCCCcEEEEEEEE
Confidence            378999999999999999999874       44789999998887665544332  344566999999999999999999


Q ss_pred             eeCCCCCCCCccEEEeecC
Q psy12061        472 YNNAGEGPESERYLERTYR  490 (626)
Q Consensus       472 ~~~~g~s~~s~~~~~~t~~  490 (626)
                      +|..|.|++|+.+.++|.+
T Consensus        74 ~n~~G~g~~S~~~~~~T~e   92 (92)
T d1qg3a1          74 YGAQGEGPYSSLVSCRTHQ   92 (92)
T ss_dssp             ECSSCBCCCCCCEEEECCC
T ss_pred             EeCCcCcCCCCCEEEEcCC
Confidence            9999999999999998864

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=1.2e-14  Score=107.96  Aligned_cols=73  Identities=30%  Similarity=0.582  Sum_probs=59.6

Q ss_pred             CCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCcee-eEEEE
Q psy12061          4 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLI   76 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~   76 (626)
                      +|++++|.|.+.|.|.|.|.|+|||.+|...  .++....+..|.|..++.+|+|.|+|.|.|..|...+ .+.|.
T Consensus        21 ~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          21 AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             SCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            4689999999999999999999999999643  3333333446888889999999999999999998654 56664

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.8e-14  Score=103.91  Aligned_cols=95  Identities=23%  Similarity=0.326  Sum_probs=78.0

Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEE
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      ++|. +|..+++...+.+++.|+|++|...+    |.+.+|.|+|+..+........  .......++|.+|+|++.|.|
T Consensus         2 a~P~-~p~~~~~~~~s~~si~v~W~~P~~~~----g~i~~Y~v~y~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~   74 (98)
T d1x5la1           2 AAPS-QVVVIRQERAGQTSVSLLWQEPEQPN----GIILEYEIKYYEKDKEMQSYST--LKAVTTRATVSGLKPGTRYVF   74 (98)
T ss_dssp             CCCC-CCCCEECSCBCSSCEEEEECCCSCCC----SCCCEEEEEEEESSSCCSSCEE--EEESSSEEEECSCCTTCEEEE
T ss_pred             cCCC-CCCceEEEeccCCEEEEEEECCCCCC----CCEEEEEEEeecccccceeeEE--ecCCceEEEECCCCCCCEEEE
Confidence            3555 88899999999999999999886543    6799999999876654433322  234456799999999999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeec
Q psy12061        468 KVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      +|+|.|..|.|++|..+.++|.
T Consensus        75 ~V~a~n~~G~g~~S~~v~~~T~   96 (98)
T d1x5la1          75 QVRARTSAGCGRFSQAMEVETG   96 (98)
T ss_dssp             CEEEEETTEECCCCCCEEEECC
T ss_pred             EEEEEcCCCCcCCCCCEEEEcC
Confidence            9999999999999999999886

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=103.66  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=59.4

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   79 (626)
                      |.+|++++|.|.+.+. |.+.+.|+|||..+....     .++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus        12 v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~-----~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~   86 (88)
T d2fcba2          12 FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR-----SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQA   86 (88)
T ss_dssp             ECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES-----SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             EecCCeEEEEEEecCCCCCcEEEEEeecccccccc-----cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeC
Confidence            5799999999999755 667999999999875322     345799999999999999999999988754 456777743

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=106.46  Aligned_cols=85  Identities=20%  Similarity=0.391  Sum_probs=71.3

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE--ecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      ..|.++.+.+|++++|.|.+.|.|.|.+  .|++||..+.....     .++.  ...+.|.|.+++..|+|.|+|.|.|
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v--~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTV--TWLRKGQVLSTSAR-----HQVTTTKYKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCC--EEESSSSTTCSSSS-----CEEEECSSEEEEECSSCCSCCCEEEEEECBC
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeE--EEEEeecccccccc-----eeeeeecceeEEeecCCCHHHCEEEEEEEEE
Confidence            3578899999999999999999998854  89999998876431     1222  2456899999999999999999999


Q ss_pred             CCCceEEEEEEEEe
Q psy12061        164 TVGKISTKTTVIVE  177 (626)
Q Consensus       164 ~~g~~~~~~~l~v~  177 (626)
                      ..|..+..+.|.|+
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1tnna_          77 SEGKQEAEFTLTIQ   90 (91)
T ss_dssp             SSCBCCEEEEEECC
T ss_pred             CCCEEEEEEEEEEE
Confidence            99999999988875

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-13  Score=104.70  Aligned_cols=103  Identities=31%  Similarity=0.337  Sum_probs=82.3

Q ss_pred             EccCCCCCCCCCceEEEe--eecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce-EEEEecCccceEEEeCCc
Q psy12061        384 FSAEDMPQVAPQGVFSRG--FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA-VYYLSRTTRNWALIVGLQ  460 (626)
Q Consensus       384 ~t~~~~p~~~p~~~~~~~--~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~  460 (626)
                      .|.+.+|..+|.++++..  .+.+++.|+|++|...+    |.+.+|.|+|+......... ...........+.|.+|+
T Consensus         5 ~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~----g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~   80 (111)
T d1x5ka1           5 TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN----GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELT   80 (111)
T ss_dssp             CSCCCCCCSCCEEEEEEECSSCTTCEEEEEECCSCCS----SCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCC
T ss_pred             EeCCCCCCCCCCCcEEEEecCCCCEEEEEEEccccCC----CceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCC
Confidence            466788888898888765  46679999999886543    77999999998766654332 223345566679999999


Q ss_pred             cCceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        461 PDTKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       461 p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      |++.|.|+|+|.|..|.|++|+.+.++|.+
T Consensus        81 p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~~  110 (111)
T d1x5ka1          81 LDTPYYFKIQARNSKGMGPMSEAVQFRTPK  110 (111)
T ss_dssp             SSSEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCEEEECCC
Confidence            999999999999999999999999998864

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=2.9e-14  Score=103.09  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=59.4

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce-eeEEEEEEe
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLH   79 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~   79 (626)
                      |.+|+.++|.|.+.+. |.+.+.|+|||..+...     ..++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.+
T Consensus        14 v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          14 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EccCCeEEEEEEecCCCCCcEEEEEEccccccee-----ccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            5699999999999754 66699999999887432     2356799999999999999999999988754 457777754

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-15  Score=113.37  Aligned_cols=98  Identities=22%  Similarity=0.334  Sum_probs=78.3

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .|+..|.++++..++++++.|+|+  +|...+|.|.+|+|+|+..+..................+.+.+|++++ |.|+|
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~--pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV   79 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQ--EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRI   79 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCC--CCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEE--eCCCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEE
Confidence            455677888888889999999999  677889999999999887665543333334455677789999999985 99999


Q ss_pred             EEEecCCCCCCCCCcEEEeecc
Q psy12061        572 LAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       572 ~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +|+|..|.|++|+++ .|.+++
T Consensus        80 ~A~n~~G~g~~S~~v-~f~~~e  100 (102)
T d2dtge1          80 RATSLAGNGSWTEPT-YFYVTD  100 (102)
T ss_dssp             CEEETTBCCCCCCCC-EECCCC
T ss_pred             EEEcCCccCCCCCCE-EEEccC
Confidence            999999999999765 576654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.6e-14  Score=102.75  Aligned_cols=72  Identities=29%  Similarity=0.417  Sum_probs=59.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC--CcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI   76 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~--~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   76 (626)
                      |.+|++++|.|.+. .|.|.+.|+|||.++..+  .++.+..+|   +|.|.+++.+|+|.|+|.|.|    ..+++.|.
T Consensus        12 v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~a~l~   86 (90)
T d1x44a1          12 AYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLS   86 (90)
T ss_dssp             EETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEE
T ss_pred             EeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceEEEEEE
Confidence            46899999999995 688999999999998754  346666554   699999999999999999966    36678888


Q ss_pred             EE
Q psy12061         77 VL   78 (626)
Q Consensus        77 v~   78 (626)
                      |.
T Consensus        87 V~   88 (90)
T d1x44a1          87 VD   88 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.8e-13  Score=99.57  Aligned_cols=89  Identities=21%  Similarity=0.447  Sum_probs=72.8

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      ++|.++.+...+++++.|+|+  +|   ++.+.+|.|+|+......   ..........+.+.+.+|.|++.|.|+|+|+
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~--~p---~~~~~~Y~i~y~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   74 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWL--PP---SGKPMGYRVKYWIQGDSE---SEAHLLDSKVPSVELTNLYPYCDYEMKVCAY   74 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEE--CC---SSCCCEEEEEEEETTSCG---GGCEEEEESSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CcCCCCEEEEccCCEEEEEEE--ec---CCCccceEEeeeeccccc---cEEEEecCCccEEEECCCCCCcEEEEEEEEE
Confidence            478999999999999999999  44   467889999988765542   2334455677899999999999999999999


Q ss_pred             ecCCCCCCCCCcEEEeec
Q psy12061        575 SNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       575 ~~~G~g~~s~~~~~~~~~  592 (626)
                      |..|.|++|+++ .++|.
T Consensus        75 n~~G~g~~S~~~-~~~T~   91 (92)
T d1qg3a1          75 GAQGEGPYSSLV-SCRTH   91 (92)
T ss_dssp             CSSCBCCCCCCE-EEECC
T ss_pred             eCCcCcCCCCCE-EEEcC
Confidence            999999999765 46553

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.8e-14  Score=107.89  Aligned_cols=97  Identities=19%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      |+.||.++.+..++.+++.|+|++ +..+++..|.+|.++++........  .........+.+.+.||.|++.|.|+|+
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~-P~~~~g~~i~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~frV~   78 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWL--KANFSNILENEFTVSGLTEDAAYEFRVI   78 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCC-CSCCTTCCCSCCEEEEEETTSCCCE--ECCCSCCCSSEEEECSCCSSCCEEEEEE
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEe-ccccCcceEEEEEEEeeccccccee--EEEeeccceeEEEEcCCCCCCEEEEEEE
Confidence            567888888888899999999994 2234456899999988776554221  1122345678899999999999999999


Q ss_pred             EEecCCC-CCCCCCcEEEeec
Q psy12061        573 AFSNGGD-GRMSSPAITFQMG  592 (626)
Q Consensus       573 a~~~~G~-g~~s~~~~~~~~~  592 (626)
                      |+|..|. |++|.++..+++.
T Consensus        79 A~n~~G~~s~~S~~s~~vt~~   99 (104)
T d1bpva_          79 AKNAAGAISPPSEPSDAITCR   99 (104)
T ss_dssp             EECTTSCEEEEEEEEEEECSC
T ss_pred             EEECCCCCCCCcCCCCCEEeC
Confidence            9999996 7777655555554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.5e-14  Score=102.10  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCC
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG  166 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g  166 (626)
                      |+....+..|+++.|.|.+.+.|.|.  +.|++++..+....      .......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 P~~~~~~~~G~~v~l~C~~~g~p~p~--i~W~~~~~~~~~~~------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   78 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTTGCESPF--FSWRTQIDSPLNGK------VTNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCE--EEEEETTCCCCSSE------EEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             CCCcEEEECCCEEEEEEeccCCCCce--EEEEecCccceeee------eeeecCCcEEEEecccccccceEEEEEEeCCC
Confidence            44556778999999999999999875  58999877654321      22233556899999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy12061        167 KISTKTTVIVE  177 (626)
Q Consensus       167 ~~~~~~~l~v~  177 (626)
                      ..+.++.|.|.
T Consensus        79 ~~~~~~~v~V~   89 (90)
T d1vcaa2          79 KLEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99999999875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.47  E-value=4.3e-14  Score=108.08  Aligned_cols=76  Identities=32%  Similarity=0.497  Sum_probs=59.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC----CC--cEEEc----------cCCcEEEccCCCCCCEEEEEEEEcC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GG--RRKIF----------ENGNLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~----~~--~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      |.+|++++|.|.+.|.|.|.|.|+|++.....    .+  +....          ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus        17 v~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   96 (109)
T d2fdbp2          17 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS   96 (109)
T ss_dssp             ECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEEC
Confidence            57899999999999999999999997654321    11  11110          1136999999999999999999999


Q ss_pred             CCCceeeEEEEE
Q psy12061         66 HGMDESKGRLIV   77 (626)
Q Consensus        66 ~g~~~~~~~l~v   77 (626)
                      .|...+.+.|.|
T Consensus        97 ~G~~~~~~~L~V  108 (109)
T d2fdbp2          97 IGISFHSAWLTV  108 (109)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999999999987

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=9.8e-14  Score=102.67  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=73.0

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      .|..+|.++++..++.+++.|+|++|....   ++.|.+|.|+|+..+................++.|.+|+|++.|.|+
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~---~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   81 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDAD---EHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFK   81 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCC---GGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeecc---CCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEE
Confidence            455578899999999999999999775432   36689999999887765544444444566678999999999999999


Q ss_pred             EEEeeCCCCCCCC
Q psy12061        469 VMAYNNAGEGPES  481 (626)
Q Consensus       469 V~a~~~~g~s~~s  481 (626)
                      |+|+|..|.|++|
T Consensus        82 V~A~n~~G~s~~S   94 (95)
T d2ibga1          82 LQSFSAASASEFS   94 (95)
T ss_dssp             EEEECSSCBCCCC
T ss_pred             EEEEeCCccCCCC
Confidence            9999999999887

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=9.5e-14  Score=103.73  Aligned_cols=86  Identities=22%  Similarity=0.314  Sum_probs=68.0

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceE
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS  169 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~  169 (626)
                      +.++..|++++|.|.+.|.|.|.  +.|++||..+........ ........+.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~--i~W~~~g~~i~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   90 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPT--MSWTKDGEPIENEEEDDE-KHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD   90 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCE--EEEEETTEECCCC--CCS-SEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEcCCCCEEEEEEEEEecCCE--EEEEeCCcccccccccce-eEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEE
Confidence            35667899999999999999874  589999999875421110 111223457899999999999999999999999999


Q ss_pred             EEEEEEEeC
Q psy12061        170 TKTTVIVEG  178 (626)
Q Consensus       170 ~~~~l~v~~  178 (626)
                      ..+.|.|..
T Consensus        91 ~~~~l~V~~   99 (100)
T d1qz1a3          91 ASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            999998864

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.9e-14  Score=105.78  Aligned_cols=76  Identities=26%  Similarity=0.441  Sum_probs=62.6

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEcc------CCCcEEEccCC---cEEEccCC-CCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIG------SGGRRKIFENG---NLLISPVS-RDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~------~~~~~~~~~~g---~L~i~~v~-~~d~G~Y~C~a~n~~g~~~   70 (626)
                      +.+|+.++|.|.+.|.|+| .+.|+|++..+.      ...++.+..++   .|.|.++. .+|+|.|+|.|.|..|...
T Consensus        14 v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~   93 (101)
T d3b5ha1          14 INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ   93 (101)
T ss_dssp             ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEE
T ss_pred             ECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEE
Confidence            6799999999999999988 799999764331      23556555443   69999998 5799999999999999998


Q ss_pred             eeEEEEE
Q psy12061         71 SKGRLIV   77 (626)
Q Consensus        71 ~~~~l~v   77 (626)
                      ..+.|.|
T Consensus        94 ~~~~L~V  100 (101)
T d3b5ha1          94 AIITLRV  100 (101)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888887

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.3e-14  Score=111.39  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=74.3

Q ss_pred             CCCCCCCceEEEeeeCCCEEEEEEeecCCCC-CCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEE
Q psy12061        491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSF-EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM  569 (626)
Q Consensus       491 ~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~-~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~  569 (626)
                      ..|+.+|.++.+..++.+++.|+|+  +|.+ ++..+.+|.|+|+....+..............+.+.|.+|+|++.|.|
T Consensus        13 ~~pp~~P~~p~v~~vt~~sv~l~W~--~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   90 (120)
T d1wfua_          13 VVPLSKPHPPVVGKVTHHSIELYWD--LEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKF   90 (120)
T ss_dssp             CCCCCCCCCCBCCCEETTEEEEECT--TTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEE
T ss_pred             ccCCCcCCCCEEeEecCCEEEEEEE--CCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeE
Confidence            3456677788888889999999999  4443 345688888887654433222233444456778999999999999999


Q ss_pred             EEEEEecCCCCCCCCCcEEEeecc
Q psy12061        570 RVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       570 ~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +|+|+|..|.|++|++ +.+++..
T Consensus        91 rV~A~n~~G~s~~S~~-~~~~T~~  113 (120)
T d1wfua_          91 RLKVTSPSGEYEYSPV-VSVATTR  113 (120)
T ss_dssp             EEEEECSSSCEEECCC-EEEECCC
T ss_pred             EEEEEeCCcEeCCCCC-EEEEeCC
Confidence            9999999999999955 4455553

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.1e-13  Score=99.84  Aligned_cols=91  Identities=21%  Similarity=0.230  Sum_probs=74.1

Q ss_pred             CCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061        390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV  469 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V  469 (626)
                      |+.+|.++++...+.++|.|+|+++....   ++.+.+|.|+++..+....    .  .....+++|.+|+|++.|.|+|
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~---~~~~i~Y~i~~~~~~~~~~----~--~~~~t~~~i~~L~p~t~Y~~rV   72 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRN---PGGNLSYELHVLNQDEEWH----Q--MVLEPRVLLTKLQPDTTYIVRV   72 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSC---CSSCCEEEEEEECSSCEEE----E--EESSSEEEEESCCSSCEEEEEE
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCC---CCcEEEEEEEEecCCceEE----E--eeccCEEEECCCCCCCEEEEEE
Confidence            45588899999999999999999876433   3567789999976554211    1  1234669999999999999999


Q ss_pred             EEeeCCCCCCCCccEEEeec
Q psy12061        470 MAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       470 ~a~~~~g~s~~s~~~~~~t~  489 (626)
                      +|.|..|.|++|..+.++|.
T Consensus        73 ~A~n~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          73 RTLTPLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             EEECSSSCCCCCCCEEEECC
T ss_pred             EEEcCCcCcCCCCCEEEEeC
Confidence            99999999999999999986

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-13  Score=100.77  Aligned_cols=92  Identities=25%  Similarity=0.320  Sum_probs=76.0

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|..+++...+.++|.|+|++|...    +|.+.+|.|+|+............  ......+.+.+|+|++.|.|+|+|+
T Consensus         3 ~~~~l~~~~~t~~si~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~   76 (95)
T d2djsa1           3 TVPIMHQVSATMRSITLSWPQPEQP----NGIILDYEIRYYEKEHNEFNSSMA--RSQTNTARIDGLRPGMVYVVQVRAR   76 (95)
T ss_dssp             CCSCCEEEEECSSEEEEECCCCSCC----SSCEEEEEEEEEETTSCSTTCEEE--EESSSEEEEESCCTTCEEEEEEEEE
T ss_pred             CCCccEEEeecCCEEEEEEEECCCC----CcceEEeeeeeeeeccCcceeEee--cCCccEEEEeecCCccEEEEEEEEE
Confidence            4558899999999999999988654    377999999998877665443332  3345569999999999999999999


Q ss_pred             eCCCCCCCCccEEEeecC
Q psy12061        473 NNAGEGPESERYLERTYR  490 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~  490 (626)
                      |..|.|++|+.+.++|.+
T Consensus        77 n~~G~g~~S~~~~~~T~~   94 (95)
T d2djsa1          77 TVAGYGKFSGKMCFQTLT   94 (95)
T ss_dssp             ESSCEEEECCCEEEECCC
T ss_pred             cCCCCCCCCCCEEEEeCC
Confidence            999999999999998874

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.1e-13  Score=108.05  Aligned_cols=101  Identities=19%  Similarity=0.271  Sum_probs=75.8

Q ss_pred             ecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccc-------------ceeeecCccc
Q psy12061        488 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN-------------DTIIPVGNTL  554 (626)
Q Consensus       488 t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~-------------~~~~~~~~~~  554 (626)
                      |...+|. +|.++.+.. +.+++.|+|+  +|.+.+|.|.+|.|+|+..+.......             ..........
T Consensus         3 ~~~~~P~-aP~~v~v~~-~~~si~l~W~--~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (123)
T d1wfta_           3 SGSSGPG-APSTVRISK-NVDGIHLSWE--PPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQL   78 (123)
T ss_dssp             CSSSCCC-CCEEEEEEE-CSSEEEEEEE--CCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHH
T ss_pred             CCCCCCc-CCcccEEEe-CCCEEEEEec--CchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCcc
Confidence            4556665 888998864 6889999999  677889999999999987665422111             1122334556


Q ss_pred             eEEecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeecc
Q psy12061        555 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       555 ~~~l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      .+.+.+|.|++.|.|+|+|+|..|.|++|+ ...+++..
T Consensus        79 ~~~i~~L~p~t~Y~frV~A~N~~G~Gp~S~-~~~~~t~~  116 (123)
T d1wfta_          79 ANAHIDYTSRPAIVFRISAKNEKGYGPATQ-IRWLQGNS  116 (123)
T ss_dssp             TTCCCBCSSSCEEEEEEEEBSSSSBCCCEE-EEEECCSC
T ss_pred             EEEEcCCCCCCEEEEEEEEecCCcCCCCCC-cEEEEecC
Confidence            778899999999999999999999999885 34465543

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=103.27  Aligned_cols=97  Identities=23%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCC-CceeeEEEEEEEeccCCccccce-eeecCccceEEecCCCCCceEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDT-IIPVGNTLDADIVDLSPGKRYHM  569 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~-~~i~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~~~Y~~  569 (626)
                      +|. +|..+.+ ....+++.|.|+  +|...+ .+|.+|.|+|+..+......... .......+.+.+.+|.|++.|.|
T Consensus         2 vP~-~P~~~~~-~~~~~sv~l~W~--~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~f   77 (101)
T d2haza1           2 TPS-SPSIDQV-EPYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAV   77 (101)
T ss_dssp             CCC-CCEEEEE-EECSSCEEEEEE--CCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEE
T ss_pred             cCc-CCccCEE-EeeCCEEEEEEe--CCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEE
Confidence            454 6765554 467789999999  555444 57999999988766543221111 12234567899999999999999


Q ss_pred             EEEEEecCCCCCCCCCcEEEeecc
Q psy12061        570 RVLAFSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       570 ~V~a~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +|+|+|.+|.|++|.+ ..|++.+
T Consensus        78 rV~A~N~~G~g~~S~~-~~~~T~P  100 (101)
T d2haza1          78 RLAALNGKGLGEISAA-SEFKTQP  100 (101)
T ss_dssp             EEEEEETTEECCCCCC-EEEECCC
T ss_pred             EEEEEeCCcCcCCCCc-eeEEeCC
Confidence            9999999999999965 5576654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.8e-14  Score=107.09  Aligned_cols=78  Identities=22%  Similarity=0.252  Sum_probs=63.2

Q ss_pred             CCCCceEEEEeeeCCCC---CCeeEEEeCCEEcc---CCCcEEEcc---------CCcEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAAP---KPKFVWKKDGNIIG---SGGRRKIFE---------NGNLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p---~p~i~W~~~~~~i~---~~~~~~~~~---------~g~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      +.+|++++|.|.+.|.|   .|.|.|+|++..+.   ...++....         ..+|.|.+++.+|+|.|+|.|.|..
T Consensus        16 v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   95 (110)
T d2avga1          16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKD   95 (110)
T ss_dssp             EETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETT
T ss_pred             EECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECC
Confidence            56899999999999998   57999999876432   223333221         1259999999999999999999999


Q ss_pred             CCceeeEEEEEEe
Q psy12061         67 GMDESKGRLIVLH   79 (626)
Q Consensus        67 g~~~~~~~l~v~~   79 (626)
                      |...+.+.|.|..
T Consensus        96 G~~~~~~~L~V~~  108 (110)
T d2avga1          96 KFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEEEEES
T ss_pred             CeEEEEEEEEEEe
Confidence            9999999999954

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.9e-14  Score=106.51  Aligned_cols=98  Identities=19%  Similarity=0.361  Sum_probs=80.5

Q ss_pred             EEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccC
Q psy12061        383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD  462 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  462 (626)
                      +.|.+++|. +|.++++...+.+++.|+|++|..      +.+.+|.|+|+..+........   .....++.|.+|+|+
T Consensus         4 v~T~~~vP~-~P~~~~~~~~~~~si~l~W~~p~~------~~i~~Y~i~y~~~~~~~~~~~~---~~~~~~~~i~~L~p~   73 (102)
T d1x5za1           4 VITQTGVPG-QPLNFKAEPESETSILLSWTPPRS------DTIANYELVYKDGEHGEEQRIT---IEPGTSYRLQGLKPN   73 (102)
T ss_dssp             CCCCSCCCC-CCEEEEEECSSSSEEEEEEECCSC------CCCCEEEECBEESSSCCCBCCE---ECSSSEEEEECCCTT
T ss_pred             EECCCCCCc-CCCCeEEEEccCCEEEEEEECCCC------CCccceEEEEEeCCCCceEEEE---cCCcCEEEECCCCCC
Confidence            467788886 899999999999999999998752      4588999999876655433322   223456999999999


Q ss_pred             ceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        463 TKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       463 t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      +.|.|+|+|+|..|.|++|..+.++|.+
T Consensus        74 t~Y~~~V~A~n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          74 SLYYFRLAARSPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             CEEEECEEEECSSCEEEECCCEEEECCC
T ss_pred             CEEEEEEEEEcCCCEeCCCCCEEEEcCC
Confidence            9999999999999999999999998864

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-14  Score=113.71  Aligned_cols=77  Identities=19%  Similarity=0.362  Sum_probs=63.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-----------------------------CcEEEccCC---cEEEcc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----------------------------GRRKIFENG---NLLISP   49 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-----------------------------~~~~~~~~g---~L~i~~   49 (626)
                      |.+|++++|.|.+.|.|.|.|.|+|++..+...                             .|+.+...+   +|.|.+
T Consensus        21 v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  100 (130)
T d1gxea_          21 VVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEG  100 (130)
T ss_dssp             ESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSC
T ss_pred             EEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEECc
Confidence            578999999999999999999999988766321                             222322211   599999


Q ss_pred             CCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061         50 VSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        50 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      ++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus       101 v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_         101 AEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             CCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            99999999999999999999999999884

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.46  E-value=4.7e-15  Score=107.54  Aligned_cols=72  Identities=22%  Similarity=0.250  Sum_probs=63.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      |.+|+++.|.|.+ +.|.|.+.|+|||.+|..++++.+..+|   +|.|.+++.+|+|.|+|.|.|.    .+++.|.|.
T Consensus        13 v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~sa~l~V~   87 (89)
T d1tiua_          13 VFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----KSAANLKVK   87 (89)
T ss_dssp             EETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----BCCEEEEEE
T ss_pred             EeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----EEEEEEEEE
Confidence            5689999999998 5789999999999999999999998776   5999999999999999999664    556778774

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=102.59  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             EEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccC
Q psy12061        383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD  462 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  462 (626)
                      ++|....|. +|..+++...+.+++.|+|.+|...+    +.|.+|.|+++.........  .........+.+.+|.|+
T Consensus         4 f~T~~~~P~-~P~~~~~~~~~~~sv~l~W~pp~~~~----~~i~~Y~i~~~~~~~~~~~~--~~~~~~~~~~~~~~L~p~   76 (105)
T d1x3da1           4 FTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPSDNG----SKIQNFVLEWDEGKGNGEFC--QCYMGSQKQFKITKLSPA   76 (105)
T ss_dssp             CCCCCSCCC-CCCCCEEEEEETTEEEEECCCCCCCS----SCEEEEEEEECTTTSSSCCE--EEEEESCSEEEEESCCTT
T ss_pred             EECCCCCCc-CCCCCEEEEccCCEEEEEEECCCCCc----CccEEEEEEEecCCCcceeE--EEecCCccEEEecCCcCC
Confidence            456676675 89999999999999999999986543    66999999986555543332  233445567999999999


Q ss_pred             ceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061        463 TKYYVKVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       463 t~Y~v~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      +.|.|+|+|.|..|.|++|+.+.++|.
T Consensus        77 t~Y~frV~A~N~~G~s~~S~~~~~~T~  103 (105)
T d1x3da1          77 MGCKFRLSARNDYGTSGFSEEVLYYTS  103 (105)
T ss_dssp             CEEEEECCEEESSCBCCCCCCEEEECS
T ss_pred             cEEEEEEEEECCCeEcCCCCcEEEECC
Confidence            999999999999999999999988875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-14  Score=102.65  Aligned_cols=82  Identities=23%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             CCcee-eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         80 GPSYY-EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        80 ~p~~~-~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      +|.+. ...|.++++.+|+.+.|.|.+.|.|.|.  +.|+|||..+...                +.+.+++.+|+|.|+
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~--v~W~k~g~~~~~~----------------~~~~~v~~~d~G~Y~   63 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE--LKCLKDGTFPLPI----------------GESVTVTRDLEGTYL   63 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCE--EEEEETTTEECCT----------------TSCEECCGGGCEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccE--EEEEEeeccceee----------------eeeeccccCCCCEEE
Confidence            34443 3457889999999999999999999985  5899999877542                224577889999999


Q ss_pred             EEEEeCCCceEEEEEEEEeCC
Q psy12061        159 CVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      |.|.|..|..+..+.|.|..|
T Consensus        64 C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          64 CRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCCCEEEEEEEEEEECC
Confidence            999999999999999998754

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-13  Score=104.53  Aligned_cols=85  Identities=24%  Similarity=0.329  Sum_probs=70.5

Q ss_pred             CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       494 ~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      +.+|.++++.. ..+++.|+|+  +|...+|.|.+|.|+|+..+..    ........+.+.+.+.+|.|++.|.|+|+|
T Consensus        21 P~~P~~~~~~~-~~~si~v~W~--~p~~~~g~i~~Y~i~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   93 (113)
T d1x5ia1          21 PEVPSSLHVRP-LVTSIVVSWT--PPENQNIVVRGYAIGYGIGSPH----AQTIKVDYKQRYYTIENLDPSSHYVITLKA   93 (113)
T ss_dssp             CCSCSEEEEEE-ETTEEEEEEE--CCSCTTBCCCEEEEEECSSCGG----GEEEECCTTCCEEEECSCCSSCEECCEEEE
T ss_pred             CCCCEeeeeee-CCCEEEEEEE--ccccCCccEEEEEEEeeecccc----ceeeeeeCCccEEEEeccccCcEEEEEEEE
Confidence            45889998875 4679999999  6777889999999988655443    334556778899999999999999999999


Q ss_pred             EecCCCCCCCCC
Q psy12061        574 FSNGGDGRMSSP  585 (626)
Q Consensus       574 ~~~~G~g~~s~~  585 (626)
                      +|..|.|+++..
T Consensus        94 ~n~~G~g~~~~~  105 (113)
T d1x5ia1          94 FNNVGEGIPLYE  105 (113)
T ss_dssp             ECSSCBCCCCCC
T ss_pred             ECCCcCCCCeee
Confidence            999999987653

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.2e-14  Score=106.23  Aligned_cols=96  Identities=21%  Similarity=0.255  Sum_probs=78.0

Q ss_pred             EEccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccC
Q psy12061        383 IFSAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD  462 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  462 (626)
                      ++|.+++|. +|.++++...+.+++.|+|++|...    +|.|.+|.|+|+..+........ .......++.+.+|+|+
T Consensus         4 v~T~e~vP~-~p~~l~~~~~~~~sv~l~W~~P~~~----ng~i~~Y~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~   77 (106)
T d1wfna1           4 VRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPGEK----NGILTGYRISWEEYNRTNTRVTH-YLPNVTLEYRVTGLTAL   77 (106)
T ss_dssp             CCSSCCSCC-CCSCCEEESCCSSEEEEECCCCTTC----CSCCCEEEEEEEESSCGGGCCCE-EECSSCCEEEEESCCTT
T ss_pred             EEcCCCCCc-CCCCcEEEEecCCEEEEEEECCCCC----CCcEEeEEEEEEECCCCcceEEE-ecCCCeeEEEEccCCCC
Confidence            578888887 8999999999999999999987643    37799999999887665433222 33445567999999999


Q ss_pred             ceEEEEEEEeeCCCCCCCCccE
Q psy12061        463 TKYYVKVMAYNNAGEGPESERY  484 (626)
Q Consensus       463 t~Y~v~V~a~~~~g~s~~s~~~  484 (626)
                      +.|.|+|+|+|..|.|+.|...
T Consensus        78 t~Y~~~V~A~n~~G~g~~s~~~   99 (106)
T d1wfna1          78 TTYTIEVAAMTSKGQGQVSAST   99 (106)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEEEEECCCCCcCCcCCE
Confidence            9999999999999999887643

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.6e-14  Score=105.82  Aligned_cols=78  Identities=23%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEeCCEEcc--CC-CcEEEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCcee-
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIG--SG-GRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDES-   71 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~i~--~~-~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-   71 (626)
                      |.+|++++|.|.+.|.| .|.|.|+|++..+.  .. .+.....++     .|.|.+++.+|+|.|+|.|.|..|...+ 
T Consensus        15 v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~   94 (104)
T d2aw2a1          15 ILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESH   94 (104)
T ss_dssp             EETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEE
Confidence            46899999999999998 48999999887653  12 222222222     4999999999999999999999998654 


Q ss_pred             eEEEEEEe
Q psy12061         72 KGRLIVLH   79 (626)
Q Consensus        72 ~~~l~v~~   79 (626)
                      .+.|.|..
T Consensus        95 ~~~l~V~e  102 (104)
T d2aw2a1          95 STTLYVTD  102 (104)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEE
Confidence            67887743

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-13  Score=107.17  Aligned_cols=109  Identities=19%  Similarity=0.208  Sum_probs=87.4

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      .++|. +|.++++...+.+++.|+|+++....    +.+..|.++|+....................+.+.+|++++.|.
T Consensus        14 ~d~P~-~P~~~~v~~~~~~sv~l~W~~p~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   88 (127)
T d1ueya_          14 YDVPN-PPFDLELTDQLDKSVQLSWTPGDDNN----SPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYS   88 (127)
T ss_dssp             CCSCC-CCEEEEEECCSSSCEEEEEECCCCCS----SCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEEC
T ss_pred             cccCc-CCCCcEEEEecCCeEEEEEeCCcccc----cceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEE
Confidence            35676 89999999999999999999886544    56899999998776655544444444555669999999999999


Q ss_pred             EEEEEeeCCCCCCCCcc-EEEeecCCCCCCCCceE
Q psy12061        467 VKVMAYNNAGEGPESER-YLERTYRKAPQKPPSAV  500 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~-~~~~t~~~~p~~~p~~l  500 (626)
                      |+|+|.|..|.|.+|.. ..++|.+..|..+|.++
T Consensus        89 frV~A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~  123 (127)
T d1ueya_          89 FRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG  123 (127)
T ss_dssp             CEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCC
T ss_pred             EEEEEEcCCcCcCCcCCcccEEcCCCCCCCCCCCC
Confidence            99999999999988865 45778888888888765

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.3e-13  Score=102.14  Aligned_cols=99  Identities=26%  Similarity=0.396  Sum_probs=79.9

Q ss_pred             CCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc-eEEEEecCccceEEEeCCccCceEEEE
Q psy12061        390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET-AVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      |..+|.++.+..++.++|.|+|+++.....  ++.+.+|.|+|+..+..... ............+.|.+|+|++.|.|+
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~--~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   78 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNN--NTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIK   78 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSC--CCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCccccc--ccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEE
Confidence            456899999999999999999997654433  48899999999877655432 222233455567999999999999999


Q ss_pred             EEEeeCCCCCCCCccEEEeecC
Q psy12061        469 VMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      |+|+|..|.|++|+.+.++|..
T Consensus        79 v~a~n~~G~s~~S~~~~~~T~~  100 (101)
T d1x4ya1          79 MQCFNEGGESEFSNVMICETKA  100 (101)
T ss_dssp             EEEECTTCCCCCCCCEEEECCC
T ss_pred             EEEEcCCCCCCCCCcEEEEccC
Confidence            9999999999999999998864

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=99.58  Aligned_cols=79  Identities=22%  Similarity=0.382  Sum_probs=64.6

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      +...+.+|++++|.|.+.+.+++ .++.|+|||..+....           .++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~-~~~~W~k~g~~~~~~~-----------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPL-VKVTFFQNGKSKKFSR-----------SDPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCC-EEEEEEETTEEEEEES-----------SCCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCC-cEEEEEeecccccccc-----------cccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            35568899999999999866543 4779999999886432           45689999999999999999999999875


Q ss_pred             -EEEEEEEEeCC
Q psy12061        169 -STKTTVIVEGP  179 (626)
Q Consensus       169 -~~~~~l~v~~~  179 (626)
                       +..+.|.|+.|
T Consensus        76 ~S~~v~l~V~~P   87 (88)
T d2fcba2          76 SSKPVTITVQAP   87 (88)
T ss_dssp             ECCCEEEEECCC
T ss_pred             EeeeEEEEEeCC
Confidence             56788888764

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=7e-14  Score=106.84  Aligned_cols=78  Identities=26%  Similarity=0.489  Sum_probs=60.7

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccCCCcEEE-----------ccCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKI-----------FENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~~~~~~~-----------~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      |.+|++++|.|.+. |.|.|+|.|+|++..+....+...           ...+.|.|.+++.+|+|.|+|.|+|..|..
T Consensus        14 v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~   93 (110)
T d1f97a2          14 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA   93 (110)
T ss_dssp             EETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             EecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcE
Confidence            56899999999985 899999999999998864332221           123469999999999999999999999987


Q ss_pred             eee--EEEEEEe
Q psy12061         70 ESK--GRLIVLH   79 (626)
Q Consensus        70 ~~~--~~l~v~~   79 (626)
                      .++  ..|.|..
T Consensus        94 ~~s~~v~l~V~~  105 (110)
T d1f97a2          94 MRSEAAHMDAVE  105 (110)
T ss_dssp             EECCCEEEEEES
T ss_pred             EEEEEEEEEEEe
Confidence            654  5666644

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.4e-13  Score=100.49  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             CCCCceEEEeee--CCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        494 QKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       494 ~~~p~~l~~~~~--~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      |.||.+|++..+  ..+.+.|+|++|...+.++.+..|+|+|+..+...   ..........+.+.|.+|.|++.|.|+|
T Consensus         2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   78 (104)
T d1n26a3           2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT---FTTWMVKDLQHHCVIHDAWSGLRHVVQL   78 (104)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSC---CEEEECGGGCSEEEESSCCTTCCEEEEE
T ss_pred             CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCc---eeeeccccceEEEEECCCCCCCEEEEEE
Confidence            358899998876  45689999996444467788999999988765542   3344556677899999999999999999


Q ss_pred             EEEecCCCCCCCCCcE
Q psy12061        572 LAFSNGGDGRMSSPAI  587 (626)
Q Consensus       572 ~a~~~~G~g~~s~~~~  587 (626)
                      +|.|..|.|.+|+.+.
T Consensus        79 ra~n~~g~g~wSewS~   94 (104)
T d1n26a3          79 RAQEEFGQGEWSEWSP   94 (104)
T ss_dssp             EEEETTTBSCCCCCCC
T ss_pred             EEEeCCCccCCcCCcC
Confidence            9999999999887544

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.5e-13  Score=105.33  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEecccc-CCccC-CCeeE----ecCCeEEEeecCCCCCEe
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMD-LNELE-TPNIN----IDGGLLEITNASFADAGE  156 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~-~~~~~-~~~~~----~~~~~l~i~~~~~~d~g~  156 (626)
                      +...|++..+.+|++++|.|.+.|.|.+ ..+|.|+|++....... ..... .....    .....|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            3456889999999999999999999843 23679999875433211 00000 00011    122469999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        157 YECVVKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       157 Y~C~a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |+|.|.|..|..+..+.|.|..++..+.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~~~p  110 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTGTTP  110 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCCcCC
Confidence            9999999999999999999987776543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2e-13  Score=99.77  Aligned_cols=87  Identities=16%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ...|++..+.+|+++.|.|.+.|.|.|  .+.|+|++..+.....    .......++.|.|.+++..|+|.|+|.|.|.
T Consensus         5 ~~~P~~~~v~~G~~~~l~C~v~g~p~p--~v~W~~~~~~i~~~~~----~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2           5 KNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDVILKKD----VRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             EECCSSEECCTTSCEEECCEEECSSCC--EEEEEETTEEGGGGCC----TTEEECTTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             EEcCCCEEEeCCCcEEEEEEEeecCCC--eEEEEEcCcccccccc----eeeeeeeeeeEEECCCCHHhCEEEEEEEEEC
Confidence            346889999999999999999999987  4589999999876531    1233345678999999999999999999998


Q ss_pred             CCceEEEEEEEEe
Q psy12061        165 VGKISTKTTVIVE  177 (626)
Q Consensus       165 ~g~~~~~~~l~v~  177 (626)
                      .|.......+.|.
T Consensus        79 ~~~~~~~~~i~Vi   91 (92)
T d1epfa2          79 ARGEINFKDIQVI   91 (92)
T ss_dssp             GGTEEEEEEEEEE
T ss_pred             cCCEEEEEEEEEE
Confidence            8877666666553

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6e-14  Score=105.77  Aligned_cols=99  Identities=14%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             EEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeE----ecCCeEEEeecCCC
Q psy12061         77 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN----IDGGLLEITNASFA  152 (626)
Q Consensus        77 v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~  152 (626)
                      |..+|.++.. .+   ...+....|.|.+.|.|.|.  +.|+|||..+.......   ....    ...+.|.|.+++..
T Consensus         2 V~~PP~i~~~-~~---~~~~~~~~i~~~v~G~P~P~--v~W~~n~~~i~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~   72 (105)
T d1wwca_           2 VYYPPRVVSL-EE---PELRLEHCIEFVVRGNPPPT--LHWLHNGQPLRESKIIH---VEYYQEGEISEGCLLFNKPTHY   72 (105)
T ss_dssp             CCCCCCCCCC-CC---CCCCCEEEEEEEEECSSCCE--EEEEETTEECCCSSSEE---EEEEECSSEEEEEEEEESCCGG
T ss_pred             EEcCCeeEEe-CC---CEEEEEEEEEEEEEEeCCCe--EEEEeCccccCCCccee---eeEEeecccceEEEEEeecccc
Confidence            4455655432 11   12455677889999999885  58999999987653100   0111    12346999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCCCCCCC
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPG  184 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~  184 (626)
                      |+|.|+|.|.|..|..+.++.|.|..+|.|+.
T Consensus        73 D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~P~~  104 (105)
T d1wwca_          73 NNGNYTLIAKNPLGTANQTINGHFLKEPFPVD  104 (105)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEECCSCCCCCSC
T ss_pred             cceEEEEEEEcCCCEEEEEEEEEEEeCCCCCC
Confidence            99999999999999999999999999998864

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=98.73  Aligned_cols=82  Identities=22%  Similarity=0.268  Sum_probs=67.8

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ++...+.+|++++|.|.+.+.+++ .++.|+|||..+....           ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~-~~~~w~k~g~~~~~~~-----------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~   74 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDV-YKVIYYKDGEALKYWY-----------ENHNISITNATVEDSGTYYCTGKVWQLD   74 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCE-EEEEEEETTEECCSCC-----------CSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCC-eEEEEEEeeecccccc-----------ccceEEEeeeeeecCcEEEEEEEeCCCC
Confidence            345568899999999999887654 5889999999886432           3567999999999999999999998886


Q ss_pred             e-EEEEEEEEeCCCC
Q psy12061        168 I-STKTTVIVEGPPG  181 (626)
Q Consensus       168 ~-~~~~~l~v~~~P~  181 (626)
                      . +..+.|.|..+|.
T Consensus        75 ~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          75 YESEPLNITVIKAPR   89 (89)
T ss_dssp             EECCCEEEEEECSCC
T ss_pred             eEeeeEEEEEEeCCC
Confidence            4 5778999998873

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.9e-13  Score=105.19  Aligned_cols=100  Identities=18%  Similarity=0.287  Sum_probs=79.9

Q ss_pred             CCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        491 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       491 ~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      +.| .+|.++++...+.+++.|+|+  ++.+.++.+..|.++|+....... ...........+.+.+.+|+|++.|.|+
T Consensus        15 d~P-~~P~~~~v~~~~~~sv~l~W~--~p~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~fr   90 (127)
T d1ueya_          15 DVP-NPPFDLELTDQLDKSVQLSWT--PGDDNNSPITKFIIEYEDAMHKPG-LWHHQTEVSGTQTTAQLNLSPYVNYSFR   90 (127)
T ss_dssp             CSC-CCCEEEEEECCSSSCEEEEEE--CCCCCSSCEEEEEEEEEBTTTCTT-CEEEEEEEESSCCEEEECCCTTCEECCE
T ss_pred             ccC-cCCCCcEEEEecCCeEEEEEe--CCcccccceEeeeeeeccccccce-eEEEEeecCCceEEEECCCccCCEEEEE
Confidence            355 489999999999999999999  778888999999998875544322 2333444557778999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEeeccc
Q psy12061        571 VLAFSNGGDGRMSSPAITFQMGEE  594 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~~~~~  594 (626)
                      |+|+|..|.|.+|.++..+++.+.
T Consensus        91 V~A~n~~G~s~~S~~s~~~~t~~~  114 (127)
T d1ueya_          91 VMAVNSIGKSLPSEASEQYLTKAS  114 (127)
T ss_dssp             EEEEESSCBCCCCSCCCCEECCCS
T ss_pred             EEEEcCCcCcCCcCCcccEEcCCC
Confidence            999999999999977665666553

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=102.32  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061        390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV  469 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V  469 (626)
                      |..||.++.+...+.+++.|+|++|........+.+.+|.|+|+..+.......  .......++.|.+|+|++.|.|+|
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V   78 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK--NANATTLSYLVTGLKPNTLYEFSV   78 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCE--ECCBCSSEEEEESCCTTCEECCEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeE--ecCCCccEEEECCCCCCCEEEEEE
Confidence            456899999999999999999998765444444667789999876655443322  233445679999999999999999


Q ss_pred             EEeeCCCCCCCCccEEEeecC
Q psy12061        470 MAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       470 ~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      +|.|..|.|++|..+.++|.+
T Consensus        79 ~a~n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          79 MVTKGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             EEECSSCBCCCCCCCCEECCC
T ss_pred             EEEeCCcCcCCCCeEEEEecc
Confidence            999999999999999888875

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-13  Score=102.48  Aligned_cols=99  Identities=26%  Similarity=0.298  Sum_probs=80.5

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      ..+|. +|.++.+...+.+++.|+|++|....   ++.+.+|.|+|+..+...... ..........+++.+|.|++.|.
T Consensus         8 ~~~P~-~P~~l~~~~~~~~sv~lsW~~P~~~~---~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~p~t~Y~   82 (107)
T d1x5fa1           8 GPLPS-APRDVVASLVSTRFIKLTWRTPASDP---HGDNLTYSVFYTKEGIARERV-ENTSHPGEMQVTIQNLMPATVYI   82 (107)
T ss_dssp             CCCCC-CCEEEEEEEECSSCEEEEEECCSSCS---SCCSSEEEEEEEETTCCCCEE-EECSSTTCSEEEECSCCTTCEEE
T ss_pred             CCCCc-CCCccEEEEecCCEEEEEEECCccCC---CCceEEEEEEEEeCCCCceEE-EEEeCCCccEEEecCCCCCCEEE
Confidence            44565 89999999999999999999875332   367999999998766654433 33445556779999999999999


Q ss_pred             EEEEEeeCCCCCCCCccEEEeecC
Q psy12061        467 VKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      |+|+|.|..|.|++|..+.++|.+
T Consensus        83 ~rV~A~n~~G~g~~S~~i~v~T~~  106 (107)
T d1x5fa1          83 FRVMAQNKHGSGESSAPLRVETQP  106 (107)
T ss_dssp             EEEEEECSSCEEEECCCEEEECCC
T ss_pred             EEEEEEeCCCCcCCCCCEEEECCC
Confidence            999999999999999999998864

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=101.21  Aligned_cols=72  Identities=21%  Similarity=0.351  Sum_probs=59.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCC-CcEEEccCC---cEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~-~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|+++.|.|.+.+ |+|.|.|+|||.+|..+ .++.+..++   +|.|.++..+|+|.|+|.|.|    ..+++.|.|
T Consensus        18 v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~l~V   92 (94)
T d1pd6a_          18 VSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFV   92 (94)
T ss_dssp             EETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCEEEE
T ss_pred             ECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEEEEE
Confidence            568999999999954 88999999999999754 455555443   599999999999999999965    466677877


Q ss_pred             E
Q psy12061         78 L   78 (626)
Q Consensus        78 ~   78 (626)
                      .
T Consensus        93 ~   93 (94)
T d1pd6a_          93 K   93 (94)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.4e-13  Score=100.43  Aligned_cols=95  Identities=19%  Similarity=0.257  Sum_probs=70.1

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecC-CCCCE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNAS-FADAG  155 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~-~~d~g  155 (626)
                      |+.+...+.+..+.+|+.++|.|.+.+.|.|. .|.|+|++.......... ...++..    ....|.|.++. ..|+|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~-~i~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNG-SESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEECCTT-GGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCee-EEEEEeccceeeeecccC-CCceEEEEeCCCEEEEEEeccccccCCE
Confidence            33444567889999999999999999998774 679999764433221111 1122222    33489999998 57999


Q ss_pred             eEEEEEEeCCCceEEEEEEEEe
Q psy12061        156 EYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       156 ~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      .|+|.|.|..|..+..+.|.|+
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999999874

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.2e-14  Score=121.35  Aligned_cols=183  Identities=11%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.++.+...+.++|.|+|++  +...++.+.+|.|+|+......+.....         ......+.+.+.|.+++.|
T Consensus         4 s~P~~~~~~~~s~~si~vsW~p--P~~~ng~i~~Y~V~~~~~~~~~~~~~~~---------~~~~~~~~~~~~y~~~v~~   72 (196)
T d2dtge2           4 SVPLDPISVSNSSSQIILKWKP--PSDPNGNITHYLVFWERQAEDSELFELD---------YCLKGLKLPSRTWSPPFES   72 (196)
T ss_dssp             CCCEEEEEEECSSSCEEEEEEC--CCCSSSSCSEEECCEEEECCCCSCTTCS---------SSCSCCCCCC---------
T ss_pred             cCCcCCEEEeccCCEEEEEEEC--CCCCCCcEEEEEEEEEcCCCCCceeEEe---------eEEeccccceeEEEEEEEE
Confidence            5889999999999999999998  4566788999999998776433321110         1123346678899999999


Q ss_pred             ecCCCCCCCCccEEEEccCCCC------CCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce
Q psy12061        369 INDVGPGPESEVVTIFSAEDMP------QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA  442 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~~~~p------~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~  442 (626)
                      .+..+.+..+...........+      ...+..+.+.......+.+.|..+...       ...|.+.+..........
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  145 (196)
T d2dtge2          73 EDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPS-------RKRRSLGDVGNAGNNEEH  145 (196)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             EcCCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCC-------ccceEEEEEEeecCCCcc
Confidence            9988876555443333222111      113334444445555666667655422       222333221111111111


Q ss_pred             EEEEecCccceEEEeCCccCceEEEEEEEeeCCCCCCC---CccEEEeec
Q psy12061        443 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPE---SERYLERTY  489 (626)
Q Consensus       443 ~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~---s~~~~~~t~  489 (626)
                      ..........++.|.+|+|++.|.|+|+|+|..|.+..   +..+.++|.
T Consensus       146 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT~  195 (196)
T d2dtge2         146 RPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM  195 (196)
T ss_dssp             SCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECC
T ss_pred             EEEEeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeCC
Confidence            11122344567999999999999999999999988754   344455543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-14  Score=108.68  Aligned_cols=76  Identities=21%  Similarity=0.370  Sum_probs=60.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccC-----------CCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----------GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~-----------~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      |.+|++++|.|.+.|.|.|.|.|+|++..+..           ........+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus        16 v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~   95 (105)
T d1nbqa1          16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSY   95 (105)
T ss_dssp             EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCE
T ss_pred             EeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCCEE
Confidence            57899999999999999999999997654421           1111223356799999999999999999999999988


Q ss_pred             eeEEEEE
Q psy12061         71 SKGRLIV   77 (626)
Q Consensus        71 ~~~~l~v   77 (626)
                      ..+.|.|
T Consensus        96 ~~~~v~v  102 (105)
T d1nbqa1          96 GEVKVKL  102 (105)
T ss_dssp             ECCEEEC
T ss_pred             EEEEEEE
Confidence            7766654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-14  Score=109.47  Aligned_cols=74  Identities=27%  Similarity=0.570  Sum_probs=60.3

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEccCCCcEEEc----------cCCcEEEccCCCCCCEEEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~~~~~~~~----------~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~   70 (626)
                      +.+|++++|.|.+ .|.|.|.+.|+|||..+....++...          ..+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus        14 v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~   93 (104)
T d1nbqa2          14 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM   93 (104)
T ss_dssp             EETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred             EecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceE
Confidence            4689999999998 58999999999999998654333221          234699999999999999999999999987


Q ss_pred             eeEEE
Q psy12061         71 SKGRL   75 (626)
Q Consensus        71 ~~~~l   75 (626)
                      .++.+
T Consensus        94 ~s~~v   98 (104)
T d1nbqa2          94 TSNAV   98 (104)
T ss_dssp             ECCCB
T ss_pred             EEEEE
Confidence            66543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=99.65  Aligned_cols=85  Identities=29%  Similarity=0.450  Sum_probs=68.6

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe----cCCeEEEeecCCCCCEeEEEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      .|.++++.+|++++|.|.+.+.|.|.  +.|+|||..+.....     ..+..    ....|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~--v~W~k~g~~l~~~~~-----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   74 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPD--IQWVKDGAVVQNLDQ-----LYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   74 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCC--EEEEETTEECCSSEE-----EEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCce--EEEEEeeccccccee-----eeeeecccCceeeEEECCCCcccCEEEEEEEE
Confidence            47788999999999999999999875  589999999875431     12222    22479999999999999999999


Q ss_pred             eCCCce-EEEEEEEEeC
Q psy12061        163 STVGKI-STKTTVIVEG  178 (626)
Q Consensus       163 n~~g~~-~~~~~l~v~~  178 (626)
                      |..|.. +..+.|.|++
T Consensus        75 N~~G~~~S~~~~l~V~G   91 (91)
T d1rhfa1          75 DGGETEISQPVWLTVEG   91 (91)
T ss_dssp             SCTTCEECCCEEEEEEC
T ss_pred             ECCCCEEEEEEEEEEEC
Confidence            999975 6678888763

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.2e-12  Score=96.96  Aligned_cols=90  Identities=20%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             CCCCCCceEEEEEeccceEEEEecCCCC-CCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCce
Q psy12061        179 PPGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST  257 (626)
Q Consensus       179 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  257 (626)
                      ||.+|.++.+...+.+++.|+|.+|... +.++++|.|+++..+...|.......        .....+.+.+ |.+++.
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~--------~~~~~~~v~~-L~~~~~   71 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEP--------VERCGFTVKD-LPTGAR   71 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSC--------BSSSEEEEEC-CCTTCC
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeec--------CceeEEEECC-CcCCeE
Confidence            6899999999999999999999987654 56899999999999888897754321        1223566766 999999


Q ss_pred             EEEEEEEecCCccCCCCCCC
Q psy12061        258 YEFKVIAGNELGYGEPSSPS  277 (626)
Q Consensus       258 y~~~v~a~n~~g~~~~s~~~  277 (626)
                      |.|||+|.|..|.|.++..+
T Consensus        72 Y~frV~A~n~~G~s~~s~~~   91 (98)
T d1x5ya1          72 ILFRVVGVNIAGRSEPATLL   91 (98)
T ss_dssp             EEEEEEEEETTEECCCCCCS
T ss_pred             EEEEEEEECCCcCCCCcCCC
Confidence            99999999999999877654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.43  E-value=1.1e-13  Score=102.01  Aligned_cols=83  Identities=19%  Similarity=0.404  Sum_probs=66.8

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.+ ...|.++.+.+|++++|.|.+.+.|.|. .+.|++||..+.....    ........+.|.|.+++.+|+|.|+|.
T Consensus         3 P~i-~~~p~~~~v~~g~~~~l~C~~~g~p~p~-~v~W~~~g~~l~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           3 PVL-KDQPAEVLFRENNPTVLECIIEGNDQGV-KYSWKKDGKSYNWQEH----NAALRKDEGSLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CEE-CCCCSEEEEETTSCEEECCCEESCCSSC-EEEEEESSSBCCTTTT----TEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred             CEE-EecCCcEEEeCCCeEEEEEEecCCCCee-EEEEEeeeeeeeeecc----eeeecccceEEEEeccChhcCeEEEEE
Confidence            444 4568899999999999999999998763 5799999999865431    122333567899999999999999999


Q ss_pred             EEeCCCceE
Q psy12061        161 VKSTVGKIS  169 (626)
Q Consensus       161 a~n~~g~~~  169 (626)
                      |.|..|...
T Consensus        77 a~N~~G~~~   85 (94)
T d1biha1          77 AETPAGVAS   85 (94)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCCEEE
Confidence            999999754

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.7e-13  Score=100.27  Aligned_cols=95  Identities=20%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             CCCCCceEEEeeeCCCEEEEEEeecCCCCC--CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        493 PQKPPSAVHIKGINPTTVHVTWRYVSPSFE--EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       493 p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~--~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      |..||.++.+..++.+++.|+|++++....  .+.+..|.|+|+..+...   ........+.+.+.|.||.|++.|.|+
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~   77 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN---TKYKNANATTLSYLVTGLKPNTLYEFS   77 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSS---CCCEECCBCSSEEEEESCCTTCEECCE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCc---ceeEecCCCccEEEECCCCCCCEEEEE
Confidence            456899999999999999999995332222  345667888776544432   223334556778999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEee
Q psy12061        571 VLAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~~~~~~  591 (626)
                      |+|+|..|.|++|+++. ++|
T Consensus        78 V~a~n~~g~s~~S~~~~-~~T   97 (100)
T d1x5ja1          78 VMVTKGRRSSTWSMTAH-GTT   97 (100)
T ss_dssp             EEEECSSCBCCCCCCCC-EEC
T ss_pred             EEEEeCCcCcCCCCeEE-EEe
Confidence            99999999999998765 444

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.6e-14  Score=103.68  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=56.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe---CCEEccCCCcEEEccC---CcEEEccCCCCCCEEEEEEEEcCCCCceee-EE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESK-GR   74 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~---~~~~i~~~~~~~~~~~---g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~   74 (626)
                      |.+|++++|.|.+.|.|.|.+.|++   ++..+.......+...   ++|.|.++..+|+|.|+|.|.|..|...+. +.
T Consensus        13 v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~   92 (96)
T d2c9aa1          13 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE   92 (96)
T ss_dssp             ECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEE
Confidence            5789999999999999988655433   3333332222233222   369999999999999999999999986554 78


Q ss_pred             EEE
Q psy12061         75 LIV   77 (626)
Q Consensus        75 l~v   77 (626)
                      |.|
T Consensus        93 L~V   95 (96)
T d2c9aa1          93 LVV   95 (96)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            877

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.2e-13  Score=98.99  Aligned_cols=84  Identities=20%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      ++|. +.+...+.+++.|+|+  +|.+.+|.|.+|.|+|+..+...   ..........+++.+.+|.|++.|.|+|+|+
T Consensus         2 ~~P~-~~~~~~~~~sv~l~W~--pP~~~~g~i~~Y~i~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   75 (94)
T d2dn7a1           2 GRPT-MMISTTAMNTALLQWH--PPKELPGELLGYRLQYCRADEAR---PNTIDFGKDDQHFTVTGLHKGTTYIFRLAAK   75 (94)
T ss_dssp             CCCE-EEEEECSTTEEEEEEE--CCSSCSSCCCEEEEEEEETTCSS---CEEEEEETTCCEEEEECCCTTCEEEEEEEEE
T ss_pred             CCCc-EeEEEEeCCEEEEEEe--CCCCCCCceEEEEEEEEEcCCCC---cEEEEcCCCccEEEEEccCCeeEEEEEEEEE
Confidence            3665 4466678899999999  67778899999999988766542   3345566788899999999999999999999


Q ss_pred             ecCCCCCCCC
Q psy12061        575 SNGGDGRMSS  584 (626)
Q Consensus       575 ~~~G~g~~s~  584 (626)
                      |..|.|++|+
T Consensus        76 n~~G~g~~s~   85 (94)
T d2dn7a1          76 NRAGLGEEFE   85 (94)
T ss_dssp             ETTEEEEEEE
T ss_pred             cCCcCCCCcc
Confidence            9999999875

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.9e-13  Score=104.40  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=77.7

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      .++|. +|.++.+...+.++|.|+|+++.+.+    +.|.+|.|+|+.......... .........+++.+|+|++.|.
T Consensus        13 ~~~P~-pP~~~~v~~~~~~sv~l~W~p~~~~~----~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~v~~L~p~t~Y~   86 (117)
T d1uema_          13 SDLPG-PPSKPQVTDVTKNSVTLSWQPGTPGT----LPASAYIIEAFSQSVSNSWQT-VANHVKTTLYTVRGLRPNTIYL   86 (117)
T ss_dssp             CCSCB-CCCCCEEEEECSSCEEEECCCCBCSS----SCCCEEEEEEEETTTEEEEEE-EEEEECSSEEEECSCCTTCEEE
T ss_pred             CccCc-CCCCCEEEEccCCEEEEEEECCCcCC----CCeEEEEEEEeccCCceeeEE-eccccccccceECCCCCCCEEE
Confidence            55776 88999999999999999999876543    569999999877665433222 2223344669999999999999


Q ss_pred             EEEEEeeCCCCCCCCccE-EEeecCCCCC
Q psy12061        467 VKVMAYNNAGEGPESERY-LERTYRKAPQ  494 (626)
Q Consensus       467 v~V~a~~~~g~s~~s~~~-~~~t~~~~p~  494 (626)
                      |+|+|.|..|.|++|... .++|.+..|.
T Consensus        87 frV~A~N~~G~s~~S~~s~~v~t~~~~Ps  115 (117)
T d1uema_          87 FMVRAINPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             EEEEEEETTEEEEECCCCCCEECCCSSCC
T ss_pred             EEEEEEeCCcCCCCcCCCcCEEeCCCCcC
Confidence            999999999998887654 3677765543

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=4.9e-13  Score=98.87  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=67.2

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      +.++.+..|++++|.|.+.+.|.|.  +.|+|+|..+......... .........|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~--v~W~k~g~~i~~~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGY--PNYFKNGKDVNGNPEDRIT-RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCC--CEEEETTEECCCCTTSSEE-SCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCE--EEEEEeeeeccccceeeee-eeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            5789999999999999999998875  5899999998754211110 111124568999999999999999999999998


Q ss_pred             e-EEEEEEEE
Q psy12061        168 I-STKTTVIV  176 (626)
Q Consensus       168 ~-~~~~~l~v  176 (626)
                      . +.++.|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            6 45777776

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.1e-14  Score=103.37  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             CCCCceEEEEeeeC-CCCCCeeEEEeCCEEccC--CCcE-EEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGS--GGRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~i~~--~~~~-~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      +.+|+.+.|.|.+. +.|.++|.|+|+|..+..  ..+. ....+++|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        14 ~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V   93 (101)
T d1iray1          14 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF   93 (101)
T ss_dssp             EETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEE
Confidence            46899999999985 678999999999876542  2222 2235678999999999999999999999999999999999


Q ss_pred             Ee
Q psy12061         78 LH   79 (626)
Q Consensus        78 ~~   79 (626)
                      ..
T Consensus        94 ~~   95 (101)
T d1iray1          94 VE   95 (101)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-13  Score=103.92  Aligned_cols=94  Identities=18%  Similarity=0.236  Sum_probs=73.7

Q ss_pred             CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       494 ~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      +.||+++.+. ...+++.|+|+  +|.+.+++|.+|.|+|+..+..+.  ........+.+.+.+.+|.|++.|.|+|+|
T Consensus         8 ~sPP~~~~~~-~t~~si~l~W~--pp~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A   82 (108)
T d1v5ja_           8 LSPPRGLVAV-RTPRGVLLHWD--PPELVPKRLDGYVLEGRQGSQGWE--VLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCEEEEEE-ECSSSEEEEEE--CCSCCSSCCCBEEEEEEETTCCCE--EEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCcCCCeEEE-EcCCEEEEEEE--ecccCCCceeEEEEEeeeeeeeee--eccccccceeeeEEEEeccCCcEEEEEEEE
Confidence            3589999875 47789999999  677788899999999887654422  122234567789999999999999999999


Q ss_pred             EecCCCCCCCCCcEEEeecc
Q psy12061        574 FSNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       574 ~~~~G~g~~s~~~~~~~~~~  593 (626)
                      +|..|.|++|+.. .+++..
T Consensus        83 ~n~~g~s~~S~~~-~~~T~~  101 (108)
T d1v5ja_          83 FAGSFVSDPSNTA-NVSTSG  101 (108)
T ss_dssp             EETTEEEEECSCC-CCCCSS
T ss_pred             EeCCCEeCCcCce-EEECCC
Confidence            9999999999654 455554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.41  E-value=7.5e-14  Score=105.55  Aligned_cols=76  Identities=29%  Similarity=0.333  Sum_probs=62.8

Q ss_pred             CCCCceEEEEeee-CCCCCCeeEEEeCCEEccC-------CCcEEEccCCcEEEccCCCCCCE---EEEEEEEcCCCCce
Q psy12061          2 AGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-------GGRRKIFENGNLLISPVSRDDSG---IYSCTATNVHGMDE   70 (626)
Q Consensus         2 ~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~i~~-------~~~~~~~~~g~L~i~~v~~~d~G---~Y~C~a~n~~g~~~   70 (626)
                      +.||++++|.|.+ .|.|.|.+.|+|++..+..       ..++.+..+++|.|.+++.+|+|   .|.|.|.|..|...
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             ccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCce
Confidence            5799999999997 8999999999998776532       35667777899999999988766   89999999999876


Q ss_pred             eeEEEEE
Q psy12061         71 SKGRLIV   77 (626)
Q Consensus        71 ~~~~l~v   77 (626)
                      ....+.+
T Consensus        94 ~~~~~~~  100 (111)
T d1biha2          94 VVLVEYE  100 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6554444

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.41  E-value=4.9e-13  Score=102.01  Aligned_cols=95  Identities=21%  Similarity=0.344  Sum_probs=68.9

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc----CCcc--CCCee----EecCCeEEEeec
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD----LNEL--ETPNI----NIDGGLLEITNA  149 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~----~~~~--~~~~~----~~~~~~l~i~~~  149 (626)
                      .|.+....|.+.++..|++++|.|.+.+.|.|.  +.|+|++.......    ....  .....    ....+.|.|.++
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~--v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPH--IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCE--EEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCe--EEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            566666668999999999999999999999875  58998765533210    0000  00000    112357999999


Q ss_pred             CCCCCEeEEEEEEeCCCceEEEEEEEE
Q psy12061        150 SFADAGEYECVVKSTVGKISTKTTVIV  176 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g~~~~~~~l~v  176 (626)
                      +..|+|.|+|.|.|..|...+++.|.|
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999999999999887

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.41  E-value=1.9e-12  Score=93.47  Aligned_cols=83  Identities=16%  Similarity=0.283  Sum_probs=64.6

Q ss_pred             CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       494 ~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      |.+|.+|++..++.+++.|+|+  ++.+ ++.+.+|.|++.   .       ........++|.+.+|.|++.|.|+|+|
T Consensus         4 P~~P~~l~~~~~~~~sv~lsW~--~p~~-~~~i~~Y~i~~~---~-------~~~~~~~~t~~~~~~L~p~t~Y~~~V~A   70 (88)
T d1k85a_           4 PTAPTNLASTAQTTSSITLSWT--ASTD-NVGVTGYDVYNG---T-------ALATTVTGTTATISGLAADTSYTFTVKA   70 (88)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEE--CCSC-CSSEEEEEEEES---S-------SEEEEESSSEEEECCCCSSCEEEEEEEE
T ss_pred             cCCCCCcEEEEecCCEEEEEEe--CCCC-CCCEEEEEEEcc---c-------eEEEecCCCEEEECCCCCCCEEEEEEEE
Confidence            3589999999999999999999  4443 456889999631   1       1222345678999999999999999999


Q ss_pred             EecCC-CCCCCCCcEEEe
Q psy12061        574 FSNGG-DGRMSSPAITFQ  590 (626)
Q Consensus       574 ~~~~G-~g~~s~~~~~~~  590 (626)
                      +|..| .|++|++ +.++
T Consensus        71 ~n~~G~~s~~S~~-v~vt   87 (88)
T d1k85a_          71 KDAAGNVSAASNA-VSVK   87 (88)
T ss_dssp             EETTTEECCCCCC-EEEE
T ss_pred             EECCCCcCCCCcC-EEEE
Confidence            99999 6888865 4444

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-13  Score=104.06  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=61.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc------c---------CCcEEEccCCCCCCE-EEEEEEEcC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF------E---------NGNLLISPVSRDDSG-IYSCTATNV   65 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~------~---------~g~L~i~~v~~~d~G-~Y~C~a~n~   65 (626)
                      |.+|++++|.|.+.|.|.|.|.|++||..+.........      .         ..+|.|.+++.+|.| .|+|.|.|.
T Consensus        14 v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~   93 (107)
T d1iray3          14 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT   93 (107)
T ss_dssp             CCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECS
T ss_pred             EeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeC
Confidence            568999999999999999999999999998754322211      0         125999999999999 599999999


Q ss_pred             CCCceeeEEEE
Q psy12061         66 HGMDESKGRLI   76 (626)
Q Consensus        66 ~g~~~~~~~l~   76 (626)
                      .|...+.+.|+
T Consensus        94 ~G~~~~~i~L~  104 (107)
T d1iray3          94 HGIDAAYIQLI  104 (107)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEEEEEE
Confidence            99988877775

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.1e-13  Score=97.45  Aligned_cols=89  Identities=21%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|..+.+...+.+++.|+|++|...+    +.+.+|.|+|...+.....    .......++.+.+|.|++.|.|+|+|.
T Consensus         3 ~P~~~~v~~~s~~si~l~W~~p~~~~----~~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~i~~L~p~t~Y~~~V~A~   74 (93)
T d1x4xa1           3 QCKPPQVTCRSATCAQVNWEVPLSNG----TDVTEYRLEWGGVEGSMQI----CYCGPGLSYEIKGLSPATTYYCRVQAL   74 (93)
T ss_dssp             CCCCCCCEEEETTEEEEECCCCSCSS----SCCCEEEEEEESSTTSCCE----EEEESCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CCCCCEEEEeCCCeEEEEEEecccCC----CeeEEEEEEEccCCCcceE----eecCCccEEEEcccceeeEEEEEEEEE
Confidence            56677778889999999999887543    6699999999765544322    223455669999999999999999999


Q ss_pred             eCCCCCCCCccEEEeec
Q psy12061        473 NNAGEGPESERYLERTY  489 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~  489 (626)
                      |..|.|++|..+.++|.
T Consensus        75 n~~G~s~~S~~~~~~Tp   91 (93)
T d1x4xa1          75 SVVGAGPFSEVVACVTP   91 (93)
T ss_dssp             CSSCCCCBCCCEEEECC
T ss_pred             ECCcCcCCCCcEEEEeC
Confidence            99999999999988875

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-12  Score=99.35  Aligned_cols=92  Identities=15%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCc-ceeEEEeeCCEEeccccCCccCCCeeE----------ecCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNMDLNELETPNIN----------IDGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~  152 (626)
                      +...|++.++..|++++|.|.+.+.|.. ...|.|+|++........    ..++.          .....|.|.+++..
T Consensus         7 Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKV----GQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTC----SSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             eEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccC----CceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            3445788999999999999999999843 235699998754432211    01111          12347999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      |+|.|+|.|.|..|..+..+.|.|..+
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          83 FTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             HCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            999999999999999999999999864

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.40  E-value=1.3e-12  Score=97.53  Aligned_cols=97  Identities=26%  Similarity=0.508  Sum_probs=75.6

Q ss_pred             EeCCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCC
Q psy12061        176 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPW  255 (626)
Q Consensus       176 v~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  255 (626)
                      |++.|.+|.++.+. ...+++.|+|+++.+++.++.+|.|+++......|........       ....++.+.+ |.++
T Consensus         2 V~dvP~~P~~~~v~-~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-L~p~   72 (100)
T d1cfba1           2 VQDVPNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV-------PNTDSSFVVQ-MSPW   72 (100)
T ss_dssp             CCCCCCCCEEEEEE-ECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEE-------ETTCSEEEEE-CCSS
T ss_pred             cccCCCcCcCcEEE-EcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeec-------CCceEEEEec-CCCC
Confidence            67899999999985 5678999999999888899999999999876655433222111       2233566666 9999


Q ss_pred             ceEEEEEEEecCCccCCCCCCCCccc
Q psy12061        256 STYEFKVIAGNELGYGEPSSPSPQYN  281 (626)
Q Consensus       256 ~~y~~~v~a~n~~g~~~~s~~~~~~~  281 (626)
                      +.|.|+|+|.|..|.|.+|.++..++
T Consensus        73 t~Y~frV~A~n~~G~g~~S~~s~~vt   98 (100)
T d1cfba1          73 ANYTFRVIAFNKIGASPPSAHSDSCT   98 (100)
T ss_dssp             EEEEEEEEEEETTEECCCCCCCCCEE
T ss_pred             CEEEEEEEEEeCCcCCCCcCCCcCEE
Confidence            99999999999999999888765444

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.7e-13  Score=100.92  Aligned_cols=94  Identities=10%  Similarity=0.068  Sum_probs=73.4

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      .|..+...|....+.+|++++|.|.+.| .|.|.++|.|++++..+.....      ........|.|..+..+|.|.|+
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~------~~~~~~s~l~i~~~~~dd~g~yt   76 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA------VGEPAEVTTTVLVRRDHHGAQFS   76 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC------CTTTEEEEEEEECCSSCSSCEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc------ccccceEEEEEeeehhHCCCEEE
Confidence            4555555666778999999999999997 5767788999999999975431      11113457999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEeCC
Q psy12061        159 CVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      |.|.|..|.......+.+..+
T Consensus        77 C~A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          77 CRTELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EEEEEECGGGTSCEEEEECCC
T ss_pred             EEEEeCCCCccCeEeeeEcCC
Confidence            999999998877777776543

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.5e-13  Score=101.16  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=77.4

Q ss_pred             EEccCCCCCCCCCc-eEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCcc
Q psy12061        383 IFSAEDMPQVAPQG-VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       383 ~~t~~~~p~~~p~~-~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  461 (626)
                      ++|.++.|. +|.. +.+...+.+++.|+|++|...+   +..+.+|.++++..........  ........+.+.+|+|
T Consensus         4 ~~T~~~~P~-~P~~~~~~~~~~~~sv~l~W~~P~~~~---g~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p   77 (107)
T d2crma1           4 FTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPKDNG---GATINKYVVEMAEGSNGNKWEM--IYSGATREHLCDRLNP   77 (107)
T ss_dssp             CCSCCCCCC-CCCCCEEEEEEETTEEEEECCCCTTCC---SSCCCEEEEEEEESSSSCCCEE--EECSSCSEEEECSCCT
T ss_pred             EECCCCCCc-CCCCCEEEeeecCCEEEEEEEECccCC---cceEEEEEEEEEeecCCCcEEE--eecCCccEEEEeccCC
Confidence            567778887 5555 4455678899999999876432   2468899999876665544332  3345566799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEeec
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      ++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus        78 ~t~Y~~rV~A~n~~G~s~~S~~v~v~Tp  105 (107)
T d2crma1          78 GCFYRLRVYCISDGGQSAVSESLLVQTP  105 (107)
T ss_dssp             TSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred             CCEEEEEEEEECCCcCcCCCCcEEEECC
Confidence            9999999999999999999988877764

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=9.3e-13  Score=96.86  Aligned_cols=83  Identities=19%  Similarity=0.307  Sum_probs=68.1

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.+|++...+.+++.|+|+  +|   ++.+.+|.|+|+..+..............+.+++.|.+|.|++.|.|+|+|++
T Consensus         3 aP~~l~v~~~~~~sv~v~W~--~p---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   77 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWD--NS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM   77 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEE--CC---SSCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEE--ec---CCcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEe
Confidence            68899999999999999999  43   36788999998876654333333334566778999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12061        576 NGGDGRMS  583 (626)
Q Consensus       576 ~~G~g~~s  583 (626)
                      ..|.|+++
T Consensus        78 ~~g~s~p~   85 (92)
T d1tdqa2          78 NSKQSIPA   85 (92)
T ss_dssp             TTEECCCE
T ss_pred             CCCEecCE
Confidence            99999866

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.38  E-value=7.2e-13  Score=95.59  Aligned_cols=79  Identities=18%  Similarity=0.326  Sum_probs=63.2

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      ++...+.+|++++|.|.+.+.+++ .++.|+|||..+...           ..++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~-~~~~W~kng~~~~~~-----------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKYF-----------HHNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEEE-----------EECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCeEccCCeEEEEEEecCCCCC-cEEEEEEccccccee-----------ccccccEECccceeccceEEEEEEeCCCC
Confidence            345568899999999998765443 477999999887542           14568999999999999999999999886


Q ss_pred             e-EEEEEEEEeC
Q psy12061        168 I-STKTTVIVEG  178 (626)
Q Consensus       168 ~-~~~~~l~v~~  178 (626)
                      . +..+.|.|++
T Consensus        77 ~~S~~v~itV~E   88 (89)
T d1fnla2          77 VSSETVNITITQ   88 (89)
T ss_dssp             EECCCEEEEEEC
T ss_pred             eEEeeEEEEEEe
Confidence            5 4577887764

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=98.04  Aligned_cols=96  Identities=20%  Similarity=0.230  Sum_probs=74.4

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|....+. ...+++.|.|++ |..+++.++.+|.|+|+..+...|...............+.+.+|.|++.|.|||+|
T Consensus         4 ~~P~~~~~~-~~~~sv~l~W~~-P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A   81 (101)
T d2haza1           4 SSPSIDQVE-PYSSTAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAA   81 (101)
T ss_dssp             CCCEEEEEE-ECSSCEEEEEEC-CSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEE
T ss_pred             cCCccCEEE-eeCCEEEEEEeC-CCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEEE
Confidence            466555554 456789999998 244555689999999999887777655444322333456889999999999999999


Q ss_pred             ecCCCCCCCCccEEEEcc
Q psy12061        369 INDVGPGPESEVVTIFSA  386 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t~  386 (626)
                      .|..|.|++|....++|.
T Consensus        82 ~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          82 LNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             EETTEECCCCCCEEEECC
T ss_pred             EeCCcCcCCCCceeEEeC
Confidence            999999999999988874

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.4e-14  Score=108.26  Aligned_cols=98  Identities=23%  Similarity=0.390  Sum_probs=70.6

Q ss_pred             EEeecCCCCCCCCceEEEee-eCCCEEEEEEeecCCCCC----CCceeeEEEEEEEeccCCccccceeeecCccceEEec
Q psy12061        485 LERTYRKAPQKPPSAVHIKG-INPTTVHVTWRYVSPSFE----EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV  559 (626)
Q Consensus       485 ~~~t~~~~p~~~p~~l~~~~-~~~~~~~l~W~~~~~~~~----~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  559 (626)
                      .|+|....|+.+|.+|++.. .+++++.|+|++|.....    ++.|.+|.+++   ++.  ..........+.+.+.|.
T Consensus         2 ~~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~---~~~--~~~~~~~~~~~~~~~~i~   76 (117)
T d2cspa1           2 EFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA---KGQ--RVAEVIFPTADSTAVELV   76 (117)
T ss_dssp             CCCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES---SSS--EEEEECCTTCSEEEEESH
T ss_pred             EEEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEe---ecc--cceeeeeeccceeeeecc
Confidence            47788888888999998864 567799999996433222    34566666632   111  112222334566788999


Q ss_pred             CCCCCceEEEEEEEEecCCCCCCCCCcE
Q psy12061        560 DLSPGKRYHMRVLAFSNGGDGRMSSPAI  587 (626)
Q Consensus       560 ~L~p~~~Y~~~V~a~~~~G~g~~s~~~~  587 (626)
                      +|++++.|.|+|+|+|..|.|++|+++.
T Consensus        77 ~L~~~t~Y~v~V~A~n~~G~s~~S~~v~  104 (117)
T d2cspa1          77 RLRSLEAKGVTVRTLSAQGESVDSAVAA  104 (117)
T ss_dssp             HHHHHTCSCBEEEEEESSCCCCCCSCBC
T ss_pred             CCCCCcEEEEEEEEEcCCCcCCCCCCEE
Confidence            9999999999999999999999997764

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.9e-13  Score=97.68  Aligned_cols=92  Identities=18%  Similarity=0.269  Sum_probs=69.4

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCC-CceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~-~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      .+|.++++...+.+++.|+|+  +|...+ ..+.+|.++++..+...   ..........+++.+.+|+|++.|.|+|+|
T Consensus         2 ~~P~~~~v~~~~~~si~l~W~--~p~~~~~~~~~~y~~~~~~~~~~~---~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A   76 (96)
T d1x5xa1           2 SMPASPVLTKAGITWLSLQWS--KPSGTPSDEGISYILEMEEETSGY---GFKPKYDGEDLAYTVKNLRRSTKYKFKVIA   76 (96)
T ss_dssp             CCCCCCEEEEECSSEEEEECC--CCSSCCSSSSCEEEEEECCSSSSC---CCEEEEEESCSEEEEESCCSSCEEEEEEEE
T ss_pred             ccCCCCEEEEecCCEEEEEEE--eecccCcceEeeeEEEeeecccee---eeEEeecCCCCEEEECCCCCCCEEEEEEEE
Confidence            367788888899999999999  444444 46777777665433331   233444567788999999999999999999


Q ss_pred             EecCCCCCCCCCcEEEeec
Q psy12061        574 FSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       574 ~~~~G~g~~s~~~~~~~~~  592 (626)
                      +|..|.|++|+++ .++|.
T Consensus        77 ~n~~G~s~~S~~~-~~~T~   94 (96)
T d1x5xa1          77 YNSEGKSNPSEVV-EFTTC   94 (96)
T ss_dssp             ECSSCEEEECCCE-EEECC
T ss_pred             EcCCcEeCCCCCE-EEEeC
Confidence            9999999999654 46554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=6.7e-13  Score=98.05  Aligned_cols=86  Identities=19%  Similarity=0.313  Sum_probs=69.4

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK  167 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~  167 (626)
                      +.+..+.+|++++|.|.+.+.+ +  .+.|+++|..+....     ...+....+.|.|.+++.+|.|.|+|.|.|..|.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~~~-~--~v~W~~~~~~l~~~~-----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSNDIG-A--NIQWLFNSQSLQLTE-----RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCCSS-C--EEEEEETTEECCCCT-----TEEEETTTTEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             cCceEEeCCCeEEEEEccCCCC-C--CEEEEEeeeeccccc-----ceeccCCceEEEEeccchhhceEEEEEEEeCCCC
Confidence            4567899999999999987643 3  569999999987653     1233345678999999999999999999999997


Q ss_pred             e-EEEEEEEEeCCCC
Q psy12061        168 I-STKTTVIVEGPPG  181 (626)
Q Consensus       168 ~-~~~~~l~v~~~P~  181 (626)
                      . +..+.|.|..+|.
T Consensus        82 ~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          82 RRSNSIKLDIIFDPS   96 (96)
T ss_dssp             EECCCCEEEECCSCC
T ss_pred             eEEEeEEEEEEcCCC
Confidence            7 4578999988773

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=6.5e-13  Score=99.66  Aligned_cols=75  Identities=20%  Similarity=0.398  Sum_probs=59.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc------------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~------------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~   69 (626)
                      |.+|++++|.|.+.|.|.|.|.|+|++..+.            ...+. ...+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        13 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~   91 (102)
T d1f97a1          13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV-TFSSSGITFSSVTRKDNGEYTCMVSEEGGQN   91 (102)
T ss_dssp             EETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTE-EEETTEEEESCCCGGGCEEEEEEEEETTSSS
T ss_pred             EeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEE-EecCCEEEEeECCccCCEEEEEEEEECCCCE
Confidence            5689999999999999999999998544221            01222 2345689999999999999999999999998


Q ss_pred             eeeEEEEE
Q psy12061         70 ESKGRLIV   77 (626)
Q Consensus        70 ~~~~~l~v   77 (626)
                      ...+.+.|
T Consensus        92 ~~~~~v~v   99 (102)
T d1f97a1          92 YGEVSIHL   99 (102)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            87766655

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.7e-13  Score=103.19  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=73.9

Q ss_pred             CCCceEEEee--eCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEE
Q psy12061        495 KPPSAVHIKG--INPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL  572 (626)
Q Consensus       495 ~~p~~l~~~~--~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~  572 (626)
                      .||.++++..  .+.+++.|+|+  ++.+.++.+.+|.|+|+...................+.+.|.+|.+++.|.|+|+
T Consensus         6 ~pP~~~~v~~~~~~~~si~v~W~--~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~   83 (115)
T d1bqua2           6 NPPHNLSVINSEELSSILKLTWT--NPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR   83 (115)
T ss_dssp             CCCEEEEEECC--CCSCEEEEEE--CCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEE
T ss_pred             CCCCCCEEEEeccCCCEEEEEEe--eccccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEEE
Confidence            5788888764  46788999999  6777788999999999876665433333334456778999999999999999999


Q ss_pred             EEecCCCCCCCCCc--EEEeecc
Q psy12061        573 AFSNGGDGRMSSPA--ITFQMGE  593 (626)
Q Consensus       573 a~~~~G~g~~s~~~--~~~~~~~  593 (626)
                      |+|..|.|.+|+++  ..+++..
T Consensus        84 a~~~~G~g~~S~~S~~~~~~T~~  106 (115)
T d1bqua2          84 CMKEDGKGYWSDWSEEASGITYE  106 (115)
T ss_dssp             EEETTSCSCCCCCCCCEEEEECC
T ss_pred             EEeCCCccCCcCCcCCEEEECCC
Confidence            99999998876533  3455543

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-12  Score=96.82  Aligned_cols=93  Identities=19%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|...+.   ..+.+|.++++..+.......  ........+++.+|++++.|.|+|+|.
T Consensus         3 ~P~~~~v~~~~~~si~l~W~~p~~~~~---~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~v~~L~p~t~Y~~rV~A~   77 (96)
T d1x5xa1           3 MPASPVLTKAGITWLSLQWSKPSGTPS---DEGISYILEMEEETSGYGFKP--KYDGEDLAYTVKNLRRSTKYKFKVIAY   77 (96)
T ss_dssp             CCCCCEEEEECSSEEEEECCCCSSCCS---SSSCEEEEEECCSSSSCCCEE--EEEESCSEEEEESCCSSCEEEEEEEEE
T ss_pred             cCCCCEEEEecCCEEEEEEEeecccCc---ceEeeeEEEeeeccceeeeEE--eecCCCCEEEECCCCCCCEEEEEEEEE
Confidence            677888888999999999998765432   346777777755444433322  223445669999999999999999999


Q ss_pred             eCCCCCCCCccEEEeecC
Q psy12061        473 NNAGEGPESERYLERTYR  490 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~  490 (626)
                      |..|.|++|+.+.++|.+
T Consensus        78 n~~G~s~~S~~~~~~T~p   95 (96)
T d1x5xa1          78 NSEGKSNPSEVVEFTTCP   95 (96)
T ss_dssp             CSSCEEEECCCEEEECCC
T ss_pred             cCCcEeCCCCCEEEEeCc
Confidence            999999999999988864

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-12  Score=94.03  Aligned_cols=89  Identities=19%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             CCceEEEeeeC--CCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        496 PPSAVHIKGIN--PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       496 ~p~~l~~~~~~--~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      +|.++.+....  .+++.|+|+  +|.  .+.|.+|.|+|+..++...  ...+...++...+.|.||+||+.|.|+|.|
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~--~P~--~~~i~~Y~i~y~~~~~~~~--~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~a   75 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWN--APQ--PSHISKYILRWRPKNSVGR--WKEATIPGHLNSYTIKGLKPGVVYEGQLIS   75 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEE--CCS--SSCEEEEEEEEEETTCSSC--CEEEEECSSCCEEEECSCCSSEEEEEEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEee--ccc--ccceeEEEEEEeeccccce--eeeeccCCCccEEEECCcccCcEEEEEEEE
Confidence            46677776654  479999999  443  4679999999987655422  334566788899999999999999999999


Q ss_pred             EecCCCCCCCCCcEEEeec
Q psy12061        574 FSNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       574 ~~~~G~g~~s~~~~~~~~~  592 (626)
                      +|..|.|+.+.  ..|++.
T Consensus        76 v~~~G~s~~~~--~~~tT~   92 (93)
T d1owwa_          76 IQQYGHQEVTR--FDFTTT   92 (93)
T ss_dssp             EESSSCEEEEE--EEEEEC
T ss_pred             EeCCCccCcEE--EEEEec
Confidence            99999998774  556654

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-12  Score=97.78  Aligned_cols=88  Identities=10%  Similarity=0.007  Sum_probs=63.3

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      .|..+.+...+.+++.|+|+  +|.+.++.+.+|.|+|+........ ..........+++.|.+|+|++.|.|+|+|+|
T Consensus         9 ~P~~p~~~~~~~~~v~l~W~--pp~~~~~~~~~y~i~y~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n   85 (105)
T d2d9qb2           9 MDPSPEAAPPQAGCLQLSWE--PWQPGLHINQKCELRHKPQRGEASW-ALVGPLPLEALQYELCGLLPATAYTLQIRCIR   85 (105)
T ss_dssp             CCC-------CCSCEEEEEE--CCGGGTTSCEEEEEEEEESSSCCCC-EEEEEECSCEEEEEECSCCSCCCEEEEEEEEE
T ss_pred             CCCCCEeecCCCCeEEEEEc--CCCCCCceeEEEEEEEEecCCccce-eeeecccCCcceeEEecccCCeEEEEEEEEEe
Confidence            34456677778999999999  6666788899999999876544322 22223455778899999999999999999999


Q ss_pred             cCCCCCCCCCc
Q psy12061        576 NGGDGRMSSPA  586 (626)
Q Consensus       576 ~~G~g~~s~~~  586 (626)
                      ..|.|.+|+.+
T Consensus        86 ~~g~G~~S~wS   96 (105)
T d2d9qb2          86 WPLPGHWSDWS   96 (105)
T ss_dssp             CSSCCCCCCCC
T ss_pred             CCCCCCCcCCC
Confidence            99998777644

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-14  Score=108.40  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=79.9

Q ss_pred             EEccCCCCCCCCCceEEEe-eecceEEEEeeeccccc--cccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCC
Q psy12061        383 IFSAEDMPQVAPQGVFSRG-FNSTAINVTWNPIELIR--ENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGL  459 (626)
Q Consensus       383 ~~t~~~~p~~~p~~~~~~~-~~~~si~l~W~~~~~~~--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  459 (626)
                      ++|.+..|+.+|.++.+.. .+.+++.|+|++|....  ...++.+.+|.+++    .............+...+.|.+|
T Consensus         3 ~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~----~~~~~~~~~~~~~~~~~~~i~~L   78 (117)
T d2cspa1           3 FSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA----KGQRVAEVIFPTADSTAVELVRL   78 (117)
T ss_dssp             CCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES----SSSEEEEECCTTCSEEEEESHHH
T ss_pred             EEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEe----ecccceeeeeeccceeeeeccCC
Confidence            5677777877999998864 56679999999885432  22346677777753    11111122223344456889999


Q ss_pred             ccCceEEEEEEEeeCCCCCCCCccEEEeecCCCCCC
Q psy12061        460 QPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK  495 (626)
Q Consensus       460 ~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~~  495 (626)
                      ++++.|.|+|+|+|..|.|+.|..+.+.|...+|+.
T Consensus        79 ~~~t~Y~v~V~A~n~~G~s~~S~~v~i~t~~~vP~~  114 (117)
T d2cspa1          79 RSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPT  114 (117)
T ss_dssp             HHHTCSCBEEEEEESSCCCCCCSCBCCCHHHHSCCC
T ss_pred             CCCcEEEEEEEEEcCCCcCCCCCCEEeeCCCCCCcc
Confidence            999999999999999999999999999998888764

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.9e-12  Score=95.44  Aligned_cols=83  Identities=22%  Similarity=0.295  Sum_probs=67.0

Q ss_pred             CCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEecCCCCCCCC
Q psy12061        299 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES  378 (626)
Q Consensus       299 ~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~n~~g~~~~s  378 (626)
                      .+.++|.|+|++ |..+++.++.+|.|+++..+...|......     ....+++.+|.+++.|.|+|+|.|..|.|.+|
T Consensus        14 ~~~~sv~l~W~~-P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S   87 (97)
T d2crza1          14 PKAKEIQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPREVYQG-----SEVECTVSSLLPGKTYSFRLRAANKMGFGPFS   87 (97)
T ss_dssp             CCSSEEEEECCC-CSCCTTSCCCEEEEEEECTTSCCCEEEEEE-----SCSEEEEESCCTTCEEEECCEEECSSCBCCCC
T ss_pred             eeCCEEEEEEeC-CCcCCCCceeEEEEEEEcCcCCceeEeecC-----CceEEEEcCCCCCEEEEEEEEEecCCeEcCCc
Confidence            456899999997 344555689999999998877777654321     33467899999999999999999999999999


Q ss_pred             ccEEEEccC
Q psy12061        379 EVVTIFSAE  387 (626)
Q Consensus       379 ~~~~~~t~~  387 (626)
                      ....++|.+
T Consensus        88 ~~~~~~T~p   96 (97)
T d2crza1          88 EKCDITTAP   96 (97)
T ss_dssp             CCEEEECCC
T ss_pred             CCCeEEeCc
Confidence            999888753

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.6e-13  Score=97.26  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEe
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      +..++..+.+.+|++++|.|.+.+.|.+ ++|+|+|+|..+....      ......++.|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~~~~~~v~~~~G~~v~L~C~~~g~~~~-~~i~W~k~~~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1           9 QEVARGVLTSLPGDSVTLTCPGVEPEDN-ATVHWVLRKPAAGSHP------SRWAGMGRRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             CCCCTTEEEECTTCCEEEECTTSCTTCC-SEEEEEEECSSSSCCC------EEEEEESSEEEECSCCGGGCEEEEEESSS
T ss_pred             EEeCCCCEEEeCCCcEEEEEEeecCCCC-ceEEEEEcccccccee------eEEecCCCEEEECCCChhcCEEEEEEECC
Confidence            3446778999999999999999987754 4679999998886542      34445678999999999999999999876


Q ss_pred             CCC
Q psy12061        164 TVG  166 (626)
Q Consensus       164 ~~g  166 (626)
                      ..+
T Consensus        82 ~~~   84 (93)
T d1n26a1          82 RPA   84 (93)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.8e-14  Score=101.91  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCE-eEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG-EYEC  159 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C  159 (626)
                      |.+.. .+.+..+.+|++++|.|.+.|.|.|.+  .|++++..+.....     .........|.|.+++.+|.| .|+|
T Consensus         3 P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v--~W~~~~~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~~Y~C   74 (92)
T d2ifga1           3 PTLKV-QVPNASVDVGDDVLLRCQVEGRGLEQA--GWILTELEQSATVM-----KSGGLPSLGLTLANVTSDLNRKNVTC   74 (92)
T ss_dssp             CEEEE-ECCSSCCBTTCCEEEEEEEECSSCCCC--CEEESCCCSSEEEC-----CCCCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CEEEE-eCCCEEEeCCCEEEEeeeccCCCCcEE--EEEECCceeeeeee-----eeeeccceeEEEccccccccceEEEE
Confidence            55554 456788999999999999999998855  89999987764321     122234568999999999999 7999


Q ss_pred             EEEeCCCceEEEEEEEE
Q psy12061        160 VVKSTVGKISTKTTVIV  176 (626)
Q Consensus       160 ~a~n~~g~~~~~~~l~v  176 (626)
                      .|.|..|..+.++.|.|
T Consensus        75 ~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          75 WAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CCEETTEECCEEECCCC
T ss_pred             EEEcCCCEEEEEEEEEE
Confidence            99999999988887765

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.5e-12  Score=94.31  Aligned_cols=90  Identities=21%  Similarity=0.209  Sum_probs=72.0

Q ss_pred             CCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEE
Q psy12061        289 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA  368 (626)
Q Consensus       289 ~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a  368 (626)
                      .+|.++.+...+.+++.|.|++  +.++++++.+|.|+|+..+...+......    .....+.+.+|.|++.|.|+|+|
T Consensus         2 ~~P~~~~~~~~~~~sv~l~W~~--p~~~~~~I~~Y~i~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~~V~A   75 (93)
T d2vkwa2           2 SAPKLEGQMGEDGNSIKVNLIK--QDDGGSPIRHYLVRYRALSSEWKPEIRLP----SGSDHVMLKSLDWNAEYEVYVVA   75 (93)
T ss_dssp             CCCEEEEEECTTSSCEEEEEEC--CCCTTSCCCEEEEEEEETTSCCCCCEEEC----TTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCccCEeEEcCCCEEEEEeeC--CCCCcCceEEEEEEeeecCcceeeeeecc----CCceEEEEeccccceEEEEEEEE
Confidence            5788999999999999999998  56788899999999998775433322221    23456889999999999999999


Q ss_pred             ecCCCCCCCCccEEEEc
Q psy12061        369 INDVGPGPESEVVTIFS  385 (626)
Q Consensus       369 ~n~~g~~~~s~~~~~~t  385 (626)
                      .|..|.|.++. +.++|
T Consensus        76 ~N~~G~s~ps~-~~~~T   91 (93)
T d2vkwa2          76 ENQQGKSKAAH-FVFRT   91 (93)
T ss_dssp             EETTEECCCEE-EEEEC
T ss_pred             EcCCCCcCCEe-EEEEe
Confidence            99999999875 44555

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=7.3e-12  Score=94.01  Aligned_cols=89  Identities=19%  Similarity=0.303  Sum_probs=66.3

Q ss_pred             CCCCceEEEe----eeCCCEEEEEEeecCCC--CCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceE
Q psy12061        494 QKPPSAVHIK----GINPTTVHVTWRYVSPS--FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY  567 (626)
Q Consensus       494 ~~~p~~l~~~----~~~~~~~~l~W~~~~~~--~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y  567 (626)
                      +.||.+|.+.    ....+++.|+|++|...  ..++.+.+|+|+|+..+....    ........+.+.+.+|.+|+.|
T Consensus         3 P~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y   78 (103)
T d1f6fb2           3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEW----EIHFTGHQTQFKVFDLYPGQKY   78 (103)
T ss_dssp             CCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCC----EEEEEETCSEEEECCCCTTCEE
T ss_pred             CCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcce----eeecccceeEEEeCCCCcceEE
Confidence            4588898875    33567899999964332  234577899999987665522    2233446788999999999999


Q ss_pred             EEEEEEEecCCC-CCCCCCc
Q psy12061        568 HMRVLAFSNGGD-GRMSSPA  586 (626)
Q Consensus       568 ~~~V~a~~~~G~-g~~s~~~  586 (626)
                      .|+|+|.+..|. |+||+++
T Consensus        79 ~~rVra~~~~G~wS~wS~~~   98 (103)
T d1f6fb2          79 LVQTRCKPDHGYWSRWSQES   98 (103)
T ss_dssp             EEEEEEEESSSCCCCCCCCE
T ss_pred             EEEEEEEeCCCCCCCCcCce
Confidence            999999999996 8888654

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.5e-13  Score=98.69  Aligned_cols=90  Identities=18%  Similarity=0.298  Sum_probs=60.9

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCC---ceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEE---PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~---~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .+|.+|.+.....+++.|+|.+  |...++   ....|.|+|+..+................+.+.+.+|.|++.|.|+|
T Consensus         3 ~~P~~l~v~~~~~~s~~v~W~~--P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   80 (101)
T d1iarb2           3 RAPGNLTVHTNVSDTLLLTWSN--PYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV   80 (101)
T ss_dssp             CCCEEEEEC----CCEEEEEEC--SSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEE
T ss_pred             ccCCcCEEEEEeCCeEEEEEcc--ccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEE
Confidence            4899999999999999999994  433332   33469999887766544333344445566788999999999999999


Q ss_pred             EEEecCCCCCCCCCc
Q psy12061        572 LAFSNGGDGRMSSPA  586 (626)
Q Consensus       572 ~a~~~~G~g~~s~~~  586 (626)
                      +|.|..|.|++|+.+
T Consensus        81 rA~~~~g~g~wSewS   95 (101)
T d1iarb2          81 RAWAQAYNTTWSEWS   95 (101)
T ss_dssp             EEECGGGTCCCCCCC
T ss_pred             EEEcCCCCCCCcCCC
Confidence            999999999888643

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=5.1e-12  Score=95.36  Aligned_cols=95  Identities=27%  Similarity=0.481  Sum_probs=75.1

Q ss_pred             CCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCC-CCceEeecceeeeeeeccCCceeEEEEeeccCCc
Q psy12061        178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS  256 (626)
Q Consensus       178 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  256 (626)
                      .+|.+|.++.+...+.+++.|+|.++.+++.++.+|.|+++.... ..|........       .....+.+.+ |.+++
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~-L~p~t   80 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIP-------PSRLSVEITG-LEKGI   80 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEEC-------TTCCEEEEES-CCTTC
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEEEeec-------CCccEEEECC-CCCCC
Confidence            478999999999999999999999888888899999999987554 46655433221       2233566655 99999


Q ss_pred             eEEEEEEEecCCccCCCCCCCCcc
Q psy12061        257 TYEFKVIAGNELGYGEPSSPSPQY  280 (626)
Q Consensus       257 ~y~~~v~a~n~~g~~~~s~~~~~~  280 (626)
                      .|.|||+|.|..|.+.+|.++..+
T Consensus        81 ~Y~frV~A~N~~G~s~~S~pS~p~  104 (108)
T d1x4za1          81 SYKFRVRALNMLGESEPSAPSRPY  104 (108)
T ss_dssp             EEEEEEEEEETTEECCCCCCCCCE
T ss_pred             EEEEEEEEECCCcCCCCCCCCCCE
Confidence            999999999999999888765433

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.6e-12  Score=93.38  Aligned_cols=85  Identities=18%  Similarity=0.395  Sum_probs=66.2

Q ss_pred             CCCCCceEEEeeeCC-CEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        493 PQKPPSAVHIKGINP-TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       493 p~~~p~~l~~~~~~~-~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      |..||.+|++..... +++.|+|+  +|.  ++.|.+|+|.|+..++.... ........+.+++.|.+|.||+.|.|+|
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~--~p~--~~~i~~Y~v~y~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~v~V   75 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWE--RST--TPDITGYRITTTPTNGQQGN-SLEEVVHADQSSCTFDNLSPGLEYNVSV   75 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEE--CCS--CSSCCEEEEEEEETTTCSSC-CEEEEECTTCCEEECCCCCTTSCEEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEee--CCC--CCCeeEEEEEEEEecccCce-EEEEEeCCCccEEEECCCCCCCEEEEEE
Confidence            456899999988765 46999999  442  34589999998876544322 3445566788899999999999999999


Q ss_pred             EEEecCCCCCC
Q psy12061        572 LAFSNGGDGRM  582 (626)
Q Consensus       572 ~a~~~~G~g~~  582 (626)
                      +|++..|.|.+
T Consensus        76 ~a~~~~g~s~p   86 (94)
T d1fnfa1          76 YTVKDDKESVP   86 (94)
T ss_dssp             EEEETTEECCC
T ss_pred             EEEcCCCEeCC
Confidence            99999997753

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.3e-12  Score=94.25  Aligned_cols=82  Identities=18%  Similarity=0.364  Sum_probs=67.5

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.+|++...+.+++.|+|+  +|.  ++.+.+|.|+|+..+....  ..........++|.|.||.||+.|.|+|+|+|
T Consensus         8 ~P~~l~v~~~t~~si~l~W~--~p~--~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~   81 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWT--PLN--SSTIIGYRITVVAAGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISVITLI   81 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECC--CCC--CSSCCEEEEEEEEETSCCE--EEEEECCSSCSEEEECCCCTTSEEEEEEEEEE
T ss_pred             cCCCeEEEEEcCCEEEEEEE--ecC--CceEEeEEEEEEEeeccce--EEEEEeCCCCeEEEEecccCCEEEEEEEEEEe
Confidence            68899999999999999999  443  3568999999887765422  22344567788999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12061        576 NGGDGRMS  583 (626)
Q Consensus       576 ~~G~g~~s  583 (626)
                      ..|.|+++
T Consensus        82 ~~g~s~p~   89 (95)
T d2fnba_          82 NGGESAPT   89 (95)
T ss_dssp             TTEECCCC
T ss_pred             CCcEeCCE
Confidence            99998876

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=3.3e-12  Score=92.38  Aligned_cols=79  Identities=14%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.+|++...+.+++.|+|+  +|.   +.+.+|.|.|+..+..    ........+.+.+.|.+|.|++.|.|+|+|++
T Consensus         2 aP~~l~v~~~t~~sv~v~W~--~p~---~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~   72 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWR--RPV---AKFDRYRLTYVSPSGK----KNEMEIPVDSTSFILRGLDAGTEYTISLVAEK   72 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEE--CCS---SCCSEEEEEEECTTCC----EEEEEECTTCSEEEEESCCSSCEEEEEEEEES
T ss_pred             cCcCcEEEEecCCEEEEEEE--CCC---CCcceeEEEeecCCcc----eeEEeCCCCcCEEEECCCCcCCEEEEEEEEEc
Confidence            68899999999999999999  442   5688999998765443    33455677889999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12061        576 NGGDGRMS  583 (626)
Q Consensus       576 ~~G~g~~s  583 (626)
                      ..|.|+++
T Consensus        73 ~~~~s~~~   80 (87)
T d1qr4a1          73 GRHKSKPT   80 (87)
T ss_dssp             SSCBCCCE
T ss_pred             CCCCccCE
Confidence            99998865

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-12  Score=95.08  Aligned_cols=91  Identities=15%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEE-EeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEe
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGE  156 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~-W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~  156 (626)
                      +|.|. . +++..+.+|++++|.|.+.|.|.|.+.+. |.+++..+.....     .++..  ..+.|.|.+++.+|+|.
T Consensus         2 ~P~f~-~-~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~   74 (96)
T d2c9aa1           2 TPHFL-R-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI-----KVTSSRRFIASFNVVNTTKRDAGK   74 (96)
T ss_dssp             SCEEC-C-CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEE-----EEEETTEEEEEEEECSCCGGGCSE
T ss_pred             cCeec-c-cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCce-----eEEEeecCceEEEECCCCHHHCeE
Confidence            56775 3 78999999999999999999998865433 3444444433211     11111  23579999999999999


Q ss_pred             EEEEEEeCCCce-EEEEEEEEe
Q psy12061        157 YECVVKSTVGKI-STKTTVIVE  177 (626)
Q Consensus       157 Y~C~a~n~~g~~-~~~~~l~v~  177 (626)
                      |+|.|.|..|.. +..+.|.|+
T Consensus        75 Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          75 YRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCeEEEEEEEEEEC
Confidence            999999999986 555788874

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.6e-13  Score=100.53  Aligned_cols=88  Identities=20%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             eEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeCCC
Q psy12061        397 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAG  476 (626)
Q Consensus       397 ~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g  476 (626)
                      +.+...+.+++.|+|++|.+.    ++.|.+|.|+|+..+.. +.............+++.+|.|++.|.|+|+|.|..|
T Consensus        19 ~~~~~~~~~sv~l~W~~P~~~----~~~I~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G   93 (108)
T d1wf5a1          19 ATLSTVERRAINLTWTKPFDG----NSPLIRYILEMSENNAP-WTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVG   93 (108)
T ss_dssp             EEECSSSTTEEEEECCCCCCC----SSCEEEEEEEEECTTCC-CEEEESSCCTTCCEEEEESCCTTCEEEEEEEEEESSC
T ss_pred             EEEEeccCCEEEEEEECCCCC----CCccEEEEEEEEeccCC-ceEEeeeecCCccEEEECCCCCCCEEEEEEEEEcCCc
Confidence            444456788999999988643    36799999999765543 2222222344556799999999999999999999999


Q ss_pred             CCCCCccEEEeec
Q psy12061        477 EGPESERYLERTY  489 (626)
Q Consensus       477 ~s~~s~~~~~~t~  489 (626)
                      .|++|......|.
T Consensus        94 ~s~~S~~~~~~t~  106 (108)
T d1wf5a1          94 KGQFSKDTERVSL  106 (108)
T ss_dssp             EEEECCCCSCEEC
T ss_pred             CCCCcCCcCCEEC
Confidence            9988876655543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.8e-12  Score=95.84  Aligned_cols=84  Identities=25%  Similarity=0.407  Sum_probs=64.7

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEee-CCEEeccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      .|.+..+..|+++.|.|.+.+.|.+ .++.|+| +|..+....      .++..     ..+.|.|.+++.+|+|.|+|.
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~-~~v~W~~~~g~~~~~~~------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   78 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKLSPNQ------QRISVVWNDDDSSTLTIYNANIDDAGIYKCV   78 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCC-CEEEEECTTSCEECCBS------SSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCC-CEEEEEEeeeeeeeecc------ccEEEEeecCcceEEEcccCchhhceEEEEE
Confidence            5677889999999999999998753 3679998 566665432      22221     335799999999999999999


Q ss_pred             EEeCCCce-EEEEEEEEe
Q psy12061        161 VKSTVGKI-STKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~-~~~~~l~v~  177 (626)
                      |.|..|.. ++++.|.|.
T Consensus        79 a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          79 VTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEETTTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEEE
Confidence            99999975 466777764

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.7e-13  Score=103.36  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=71.8

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCC-ccceEEEEecCccceEEEeCCccCceEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNP-EETAVYYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      .|+.+|..+.+..++.++|.|+|++|...+.   ..+.+|.|+|+..... ...............+++.+|+|++.|.|
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g---~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   90 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKR---QGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKF   90 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCC---CSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCc---ccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeE
Confidence            4555777778888899999999998765431   2345555555322111 11112222234456799999999999999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecCCCC
Q psy12061        468 KVMAYNNAGEGPESERYLERTYRKAP  493 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~~~p  493 (626)
                      +|+|+|..|.|++|+.+.+.|....|
T Consensus        91 rV~A~n~~G~s~~S~~~~~~T~~~~p  116 (120)
T d1wfua_          91 RLKVTSPSGEYEYSPVVSVATTRESG  116 (120)
T ss_dssp             EEEEECSSSCEEECCCEEEECCCCCC
T ss_pred             EEEEEeCCcEeCCCCCEEEEeCCCCc
Confidence            99999999999999999998876544

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=103.80  Aligned_cols=90  Identities=21%  Similarity=0.309  Sum_probs=69.1

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCcc----------------------CCCeeE--e--
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL----------------------ETPNIN--I--  139 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~----------------------~~~~~~--~--  139 (626)
                      ..|..+.+.+|++++|.|.+.|.|.|.  +.|++++..+........                      ...++.  .  
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   91 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPAPT--VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK   91 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSCCE--EEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecCCe--EEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC
Confidence            346789999999999999999999874  589998877754321000                      011111  1  


Q ss_pred             cCCeEEEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        140 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       140 ~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        92 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            22469999999999999999999999999999999875

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.8e-12  Score=93.47  Aligned_cols=87  Identities=22%  Similarity=0.367  Sum_probs=70.5

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .+|.++++...+.+++.|+|+  +|   .+.+.+|.|.|+..+..    ........+.+++.+.||.|++.|.|+|+|+
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~--~p---~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWT--EP---PVRPAGYLLSFHTPGGQ----TQEILLPGGITSHQLLGLFPSTSYNARLQAM   73 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEE--CC---SSCCSEEEEEEECTTSC----EEEEEECSSCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CcCCCCEEEEeCCCEEEEEEE--cc---ccccccEEEEEEccccc----cEEEEECCCccEEEEeCccCCCEEEEEEEEE
Confidence            378899999999999999999  43   35688999998765443    3445567788999999999999999999999


Q ss_pred             ecCCCCCCCCCcEEEeec
Q psy12061        575 SNGGDGRMSSPAITFQMG  592 (626)
Q Consensus       575 ~~~G~g~~s~~~~~~~~~  592 (626)
                      +..|.|+++.  ..|+|.
T Consensus        74 ~~~g~s~~~~--~~~tT~   89 (93)
T d2cuma1          74 WGQSLLPPVS--TSFTTG   89 (93)
T ss_dssp             BTTBCCCCEE--EEEECC
T ss_pred             eCCCCCCCEE--EEEEeC
Confidence            9999988764  445554

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.8e-12  Score=93.99  Aligned_cols=97  Identities=12%  Similarity=0.223  Sum_probs=72.0

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .||.+|++..++.+++.|+|+++........+..|.+.|+..+..... ........+...+.|.+|+|++.|.|+|+|.
T Consensus         4 ~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           4 MAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEE-APLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTT-SCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEeccccccee-eeEEecCCCcEEEEECCCCCCCEEEEEEEEE
Confidence            489999999999999999999644444455667888888766544322 3334455678889999999999999999999


Q ss_pred             ecCCC-CCCCC--CcEEEeec
Q psy12061        575 SNGGD-GRMSS--PAITFQMG  592 (626)
Q Consensus       575 ~~~G~-g~~s~--~~~~~~~~  592 (626)
                      +..|. |.+|+  +.+.|+|.
T Consensus        83 ~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          83 PLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             ESCCSSCCCCCCCCCEEEECC
T ss_pred             ECCCCCCCCCCCcCCEEEECC
Confidence            99885 44443  23556664

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.7e-12  Score=92.61  Aligned_cols=82  Identities=17%  Similarity=0.378  Sum_probs=67.2

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .||.+|++..++.+++.|+|+  +|   .+.+.+|.|+|+..+....  ........+.+++.|.+|+|++.|.|+|+|+
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~--~p---~~~~~~Y~i~~~~~~~~~~--~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~   74 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWI--AP---RATITGYRIRHHPEHFSGR--PREDRVPHSRNSITLTNLTPGTEYVVSIVAL   74 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEE--CC---SSCCSEEEEEEECSCCSSC--CEEEEEETTCCEEEEESCCTTCEEEEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEE--eC---CCEEeeEEEEEEECCCCCc--eEEEEECCCccEEEECCCcccCEEEEEEEEE
Confidence            378999999999999999999  43   3668899999886655433  2334556788999999999999999999999


Q ss_pred             ecCCCCCCC
Q psy12061        575 SNGGDGRMS  583 (626)
Q Consensus       575 ~~~G~g~~s  583 (626)
                      +..|.|++.
T Consensus        75 ~~~g~s~p~   83 (89)
T d1fnfa3          75 NGREESPLL   83 (89)
T ss_dssp             ETTEECCCE
T ss_pred             cCCcCcCCE
Confidence            999987643

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.6e-12  Score=95.99  Aligned_cols=91  Identities=10%  Similarity=0.046  Sum_probs=64.7

Q ss_pred             CceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEec
Q psy12061        497 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN  576 (626)
Q Consensus       497 p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~  576 (626)
                      |..+.+.....+++.|+|+  +|...++.+.+|.|+|+...+.... ........+.+.+.|.+|.|++.|.|+|+|.+.
T Consensus        11 P~~p~~~~~~~~~i~v~W~--pp~~~~~~~~~Y~i~y~~~~~~~~w-~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~   87 (106)
T d1cd9b2          11 DIGPDVVSHQPGCLWLSWK--PWKPSEYMEQECELRYQPQLKGANW-TLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRS   87 (106)
T ss_dssp             CC-------CCSCEEEEEE--CCGGGTTSCEEEEEEEEESSTTCCC-EEEEEEESCEEEEEECCCCSCSCEEEEEEEEES
T ss_pred             CCCCeEecCCCCEEEEEEc--CcccCCccceEEEEEEeeccccccc-eeeecccCCceEEEEeccCCCeEEEEEEEEEeC
Confidence            3355666778999999999  6677788899999999876544222 112233456788999999999999999999999


Q ss_pred             CCCCCCCCCcEEEe
Q psy12061        577 GGDGRMSSPAITFQ  590 (626)
Q Consensus       577 ~G~g~~s~~~~~~~  590 (626)
                      .|.|.+|+.+-.++
T Consensus        88 ~g~g~wS~wS~~~~  101 (106)
T d1cd9b2          88 SLPGFWSPWSPGLQ  101 (106)
T ss_dssp             SSCCCCCCCCCCEE
T ss_pred             CCCCCCcCCCCCeE
Confidence            99998886544333

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.5e-12  Score=92.38  Aligned_cols=82  Identities=21%  Similarity=0.280  Sum_probs=68.2

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .+|.+|++..++.+++.|+|+  +|   .+.+.+|.|.|...+....  ........+.+.+.|.+|.|++.|.|+|+|+
T Consensus         3 d~P~~l~v~~~s~~s~~l~W~--~p---~~~~~~y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (90)
T d1tena_           3 DAPSQIEVKDVTDTTALITWF--KP---LAEIDGIELTYGIKDVPGD--RTTIDLTEDENQYSIGNLKPDTEYEVSLISR   75 (90)
T ss_dssp             CCCEEEEEESCCSSCEEEEEE--CC---SSCCSEEEEEEEETTCTTC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCcEEEEecCCEEEEEEE--eC---ceEeccEEEEEEEcCCCce--eEEEEecCCcceeeEeeecCCCEEEEEEEEE
Confidence            478999999999999999999  43   3678899999877654322  3344567788999999999999999999999


Q ss_pred             ecCCCCCCC
Q psy12061        575 SNGGDGRMS  583 (626)
Q Consensus       575 ~~~G~g~~s  583 (626)
                      +..|.|+++
T Consensus        76 ~~~g~s~~~   84 (90)
T d1tena_          76 RGDMSSNPA   84 (90)
T ss_dssp             ETTEECCCE
T ss_pred             eCCCEeCCE
Confidence            999998866

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.8e-12  Score=95.12  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=73.4

Q ss_pred             CCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCcc----ceEEEEecCccceEEEeCCccCc
Q psy12061        388 DMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE----TAVYYLSRTTRNWALIVGLQPDT  463 (626)
Q Consensus       388 ~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~----~~~~~~~~~~~~~~~i~~L~p~t  463 (626)
                      ++|. +|.++++...+.+++.|+|++|...+    |.+.+|.|+|+.......    ............++++.+|+|++
T Consensus         1 d~P~-~P~~~~~~~~~~~sv~v~W~~P~~~~----g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   75 (103)
T d1qg3a2           1 EVPS-EPGRLAFNVVSSTVTQLSWAEPAETN----GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQ   75 (103)
T ss_dssp             CCCC-CCCCCEEEEEETTEEEEECCCCSCCS----SCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTC
T ss_pred             CcCc-cCCCcEEEEecCCEEEEEEEECccCC----CCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCC
Confidence            3576 89999999999999999999887543    779999999977665421    22233344556779999999999


Q ss_pred             eEEEEEEEeeCCCCCCCCccE
Q psy12061        464 KYYVKVMAYNNAGEGPESERY  484 (626)
Q Consensus       464 ~Y~v~V~a~~~~g~s~~s~~~  484 (626)
                      .|.|+|+|.|..|.|+.+...
T Consensus        76 ~Y~~~V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          76 PYRYTVKARNGAGWGPEREAI   96 (103)
T ss_dssp             CEEEEEEEEETTEECCCEEEE
T ss_pred             EEEEEEEEEcCCccCCCcccc
Confidence            999999999999999887543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.4e-13  Score=101.25  Aligned_cols=77  Identities=10%  Similarity=0.027  Sum_probs=60.6

Q ss_pred             CCCCceEEEEeeeCCC-CCC--eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+.++|.|.+.|. |.|  +|.|+|++..|............+|.|..+..+|.|.|+|.|+|..|.......+.+.
T Consensus        16 v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          16 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             ECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEEC
T ss_pred             EeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEc
Confidence            5689999999999874 655  6889999999864322111122369999999999999999999999988877777773

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=8.5e-12  Score=91.39  Aligned_cols=88  Identities=18%  Similarity=0.290  Sum_probs=71.7

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .+|.++.+..++.+++.|+|+  +|   ++.+.+|.|.|+..+....  ........+.+.+.+.+|.|++.|.|+|+|+
T Consensus         5 ~~P~~l~v~~v~~~si~v~W~--~p---~~~~~~y~i~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~   77 (93)
T d1tdqa1           5 DGPTQILVRDVSDTVAFVEWT--PP---RAKVDFILLKYGLVGGEGG--KTTFRLQPPLSQYSVQALRPGSRYEVSISAV   77 (93)
T ss_dssp             CCCEEEEEEEECSSCEEEEEE--CC---SSCCSEEEEEEEESSSSCC--CEEEEECTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CcCCCCEEEEeCCCEEEEEEE--cc---ccCCCceEEEEEeccCcce--eeEEEeCCCceEEEEeCcccceEEEEEEEEE
Confidence            478999999999999999999  43   3678899999887665422  3345567788899999999999999999999


Q ss_pred             ecCCCCCCCCCcEEEee
Q psy12061        575 SNGGDGRMSSPAITFQM  591 (626)
Q Consensus       575 ~~~G~g~~s~~~~~~~~  591 (626)
                      +..|.|+++.  ..|+|
T Consensus        78 ~~~g~s~~~~--~~~tT   92 (93)
T d1tdqa1          78 RGTNESDASS--TQFTT   92 (93)
T ss_dssp             ETTEECCCEE--EEEEC
T ss_pred             eCCCCcCCEE--EEEEC
Confidence            9999998763  34554

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=4.5e-12  Score=91.28  Aligned_cols=80  Identities=16%  Similarity=0.297  Sum_probs=67.1

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .+|.++++...+.+++.|+|++  |   .+.+.+|.|+|+..++.    ..........+++.|.||.|++.|.|+|+|.
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~--p---~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~   72 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTK--A---SGPIDHYRITFTPSSGI----SSEVTVPRDRTSYTLTDLEPGAEYIISITAE   72 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEC--C---CSCCSEEEEEEECSSSC----CEEEEEESSCSEEEECCCCTTCCEEEEEEEE
T ss_pred             ccCCCCEEEEecCCEEEEEEeC--C---CCCccceEEEEeccccc----ceEEEeCCCccEEEECCCccccEEEEEEEEE
Confidence            3788999999999999999994  3   36788999998765543    3345566788999999999999999999999


Q ss_pred             ecCCCCCCC
Q psy12061        575 SNGGDGRMS  583 (626)
Q Consensus       575 ~~~G~g~~s  583 (626)
                      +..|.|.++
T Consensus        73 ~~~~~s~p~   81 (86)
T d1tdqa3          73 RGRQQSLES   81 (86)
T ss_dssp             ETTEECCCE
T ss_pred             cCCCEECCE
Confidence            999988866

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.33  E-value=9e-13  Score=97.57  Aligned_cols=89  Identities=24%  Similarity=0.443  Sum_probs=66.5

Q ss_pred             CCceeeeCCCceEEecC---CcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEe
Q psy12061         80 GPSYYEQLPPKITIAAH---RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE  156 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g---~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  156 (626)
                      +|.+.. .|.+..+..|   ++++|.|.+.|.|.|  .+.|+|||..+....-    .......+..|.|..++.+|+|.
T Consensus         4 ~P~f~~-~P~~~~~~~g~~~~~v~l~C~~~g~P~p--~v~W~~ng~~i~~~~~----~~~~~~~~~~l~i~~~~~~d~G~   76 (97)
T d1cs6a1           4 GPVFEE-QPAHTLFPEGSAEEKVTLTCRARANPPA--TYRWKMNGTELKMGPD----SRYRLVAGDLVISNPVKAKDAGS   76 (97)
T ss_dssp             EEEEEE-CCCCEEEETTCSCCEEEECCEEEEESCC--EEEEEETTEECCCSTT----SSEEEETTEEEEESCCHHHHCEE
T ss_pred             CCEEEE-eCCCEEEECccCCCeEEEEEEEEEeCCC--EEEEEEeeeeccCCCC----ceEEeeeeeEEEEecccccCCEE
Confidence            455554 4677777665   789999999999987  4589999999875421    12223345667778889999999


Q ss_pred             EEEEEEeCCCce-EEEEEEE
Q psy12061        157 YECVVKSTVGKI-STKTTVI  175 (626)
Q Consensus       157 Y~C~a~n~~g~~-~~~~~l~  175 (626)
                      |+|.|.|..|.. +..+.|.
T Consensus        77 Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          77 YQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEe
Confidence            999999999986 4456654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=97.27  Aligned_cols=83  Identities=18%  Similarity=0.321  Sum_probs=66.9

Q ss_pred             ecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe-----cCCeEEEeecCCCCCEeEEEEEEeCCCce
Q psy12061         94 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVVKSTVGKI  168 (626)
Q Consensus        94 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~  168 (626)
                      ..+....|.|.+.|.|.|.  +.|+|||..+..+....   .+...     ..+.|.|.+++..|+|.|+|.|.|..|+.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~--i~W~~~g~~l~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   88 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPA--LQWFYNGAILNESKYIC---TKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD   88 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCE--EEEEETTEEECCCSSEE---EEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             ccceeEEEEEEEEEeCCCE--EEEEECCEEeeeeeeee---eeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE
Confidence            4678889999999999885  48999999997642100   01111     12479999999999999999999999999


Q ss_pred             EEEEEEEEeCCCC
Q psy12061        169 STKTTVIVEGPPG  181 (626)
Q Consensus       169 ~~~~~l~v~~~P~  181 (626)
                      +..+.|.|..+|+
T Consensus        89 ~~~~~v~V~~~P~  101 (103)
T d1wwbx_          89 EKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEECCSCCCC
T ss_pred             EEEEEEEEEeCCC
Confidence            9999999998885

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.8e-12  Score=99.09  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=75.8

Q ss_pred             cCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc----eEEEEecCccceEEEeCCcc
Q psy12061        386 AEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET----AVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       386 ~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~~~~~i~~L~p  461 (626)
                      .+++|. +|.++++...+.+++.|+|+++.+.+    +.+.+|.|+|+........    ............+.+.+|+|
T Consensus         7 p~~~P~-~P~~~~~~~~~~~sv~l~W~pp~~~~----~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p   81 (111)
T d1wisa1           7 PPELPG-PPTNLGISNIGPRSVTLQFRPGYDGK----TSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNP   81 (111)
T ss_dssp             CCCCCC-CCEEEEEESCCSSCEEEEEECCCCCS----SCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCT
T ss_pred             CCCCCc-CCCCCEEEEcCCCEEEEEEeCCCCCC----CceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCC
Confidence            456675 89999999899999999999886543    6699999999765554322    12223344556799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCcc-EEEeec
Q psy12061        462 DTKYYVKVMAYNNAGEGPESER-YLERTY  489 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~-~~~~t~  489 (626)
                      ++.|.|+|+|.|..|.|++|.. ..++|.
T Consensus        82 ~t~Y~frV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          82 FTCYSFRMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             TSEECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred             CCEEEEEEEEEcCCcCCCCcCCCCCEEcc
Confidence            9999999999999999988864 345554

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.2e-12  Score=91.06  Aligned_cols=82  Identities=20%  Similarity=0.387  Sum_probs=67.8

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      ||.+|.+..++.+++.|+|+  +|   .+.+.+|.|+|........  ..........+++++.+|.|++.|.|+|+|+|
T Consensus         2 pP~~l~~~~v~~~si~l~W~--~p---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n   74 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWT--PP---NVQLTGYRVRVTPKEKTGP--MKEINLAPDSSSVVVSGLMVATKYEVSVYALK   74 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEE--CC---SSCCSEEEEEEEESSSCSC--CCEEEECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCEEEEEecCCEEEEEEE--cc---ceeccceEEEEEeeeCCCc--eEEEEeCCCCeEEEEecccCceEEEEEEEEEe
Confidence            68999999999999999999  43   3567789998876655422  33445667888999999999999999999999


Q ss_pred             cCCCCCCCC
Q psy12061        576 NGGDGRMSS  584 (626)
Q Consensus       576 ~~G~g~~s~  584 (626)
                      ..|.|++++
T Consensus        75 ~~g~s~~~~   83 (90)
T d1fnha1          75 DTLTSRPAQ   83 (90)
T ss_dssp             TTEECCCEE
T ss_pred             CCCCcCCEe
Confidence            999999874

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2e-12  Score=100.64  Aligned_cols=100  Identities=16%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             ccCCCCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccce----E---E-------EEecCc
Q psy12061        385 SAEDMPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA----V---Y-------YLSRTT  450 (626)
Q Consensus       385 t~~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~----~---~-------~~~~~~  450 (626)
                      +...+|. +|.++.+.. +.+++.|+|++|...+    |.|.+|.|+|+.........    .   .       ......
T Consensus         3 ~~~~~P~-aP~~v~v~~-~~~si~l~W~~P~~~~----g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (123)
T d1wfta_           3 SGSSGPG-APSTVRISK-NVDGIHLSWEPPTSPS----GNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAG   76 (123)
T ss_dssp             CSSSCCC-CCEEEEEEE-CSSEEEEEEECCSSCC----SSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHH
T ss_pred             CCCCCCc-CCcccEEEe-CCCEEEEEecCchhcC----CceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCC
Confidence            4456776 899999865 6889999999887553    67999999998776543211    0   0       111222


Q ss_pred             cceEEEeCCccCceEEEEEEEeeCCCCCCCCccEEEeecC
Q psy12061        451 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       451 ~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      ...+.+.+|+|++.|.|+|+|.|..|.|++|+...++|..
T Consensus        77 ~~~~~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~  116 (123)
T d1wfta_          77 QLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNS  116 (123)
T ss_dssp             HHTTCCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECCSC
T ss_pred             ccEEEEcCCCCCCEEEEEEEEecCCcCCCCCCcEEEEecC
Confidence            3456788999999999999999999999999988888754

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.8e-12  Score=94.75  Aligned_cols=88  Identities=19%  Similarity=0.300  Sum_probs=70.4

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .+|.+|++..++.+++.|+|+  ++   .+.+.+|.|.|...+..    ........+.+++.|.||.|++.|.|+|+|+
T Consensus         2 ~~P~~l~~~~~t~~si~l~W~--~p---~~~i~~Y~v~~~~~~~~----~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~   72 (102)
T d2cuha1           2 DGPTQLRALNLTEGFAVLHWK--PP---QNPVDTYDIQVTAPGAP----PLQAETPGSAVDYPLHDLVLHTNYTATVRGL   72 (102)
T ss_dssp             SSCEEEECCCCSSSCEEEEEE--CC---SSCCSEEEEEEECSSSC----CEEEEEETTCSEEEECSCCSSSEEEEEEEEE
T ss_pred             cCCCccEEEEeCCCEEEEEEE--ee---eccceeeEEEEEecccc----ceeeeeeeeeeeEEEccEEeeEEEEEEEEEE
Confidence            478999999999999999999  43   36688999998754433    3344566788999999999999999999999


Q ss_pred             ecCCCCCCCCCcEEEeecc
Q psy12061        575 SNGGDGRMSSPAITFQMGE  593 (626)
Q Consensus       575 ~~~G~g~~s~~~~~~~~~~  593 (626)
                      +..|.|.++.  ..|++..
T Consensus        73 ~~~~~s~~~~--~~~~T~~   89 (102)
T d2cuha1          73 RGPNLTSPAS--ITFTTGL   89 (102)
T ss_dssp             ETTEECCCEE--EEEESCC
T ss_pred             eCCCCcCCEE--EEEECCC
Confidence            9999887653  4455543

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.31  E-value=6.6e-12  Score=90.60  Aligned_cols=85  Identities=25%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      +|. +|.++++...+.+++.|+|+++.+.     +.+.+|.|++..      ..   ........+++.+|+|++.|.|+
T Consensus         3 AP~-~P~~l~~~~~~~~sv~lsW~~p~~~-----~~i~~Y~i~~~~------~~---~~~~~~t~~~~~~L~p~t~Y~~~   67 (88)
T d1k85a_           3 APT-APTNLASTAQTTSSITLSWTASTDN-----VGVTGYDVYNGT------AL---ATTVTGTTATISGLAADTSYTFT   67 (88)
T ss_dssp             SCC-CCEEEEEEEECSSCEEEEEECCSCC-----SSEEEEEEEESS------SE---EEEESSSEEEECCCCSSCEEEEE
T ss_pred             CcC-CCCCcEEEEecCCEEEEEEeCCCCC-----CCEEEEEEEccc------eE---EEecCCCEEEECCCCCCCEEEEE
Confidence            454 8999999999999999999987643     348899997521      11   11233456999999999999999


Q ss_pred             EEEeeCCC-CCCCCccEEEee
Q psy12061        469 VMAYNNAG-EGPESERYLERT  488 (626)
Q Consensus       469 V~a~~~~g-~s~~s~~~~~~t  488 (626)
                      |+|+|..| .|++|+.+.++|
T Consensus        68 V~A~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          68 VKAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EEEEETTTEECCCCCCEEEEC
T ss_pred             EEEEECCCCcCCCCcCEEEEC
Confidence            99999999 689998887765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.31  E-value=3.8e-13  Score=101.02  Aligned_cols=86  Identities=19%  Similarity=0.277  Sum_probs=66.4

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCEeEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      +.|...++..+.+.+|+++.|.|.+ .+.|.|  .|.|+|||..+....    ...+.. ..++.|.|.+++.+|+|.|+
T Consensus         4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~--~v~W~k~g~~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~   77 (105)
T d1cs6a2           4 QEFSAEERDPVKITEGWGVMFTCSPPPHYPAL--SYRWLLNEFPNFIPA----DGRRFVSQTTGNLYIAKTEASDLGNYS   77 (105)
T ss_dssp             CCCCSSCCCCEEEETTSCEEECCCCCSEESCC--EEEEEESSTTCBCCC----CSSEEECTTTCCEEESSCCGGGCEEEE
T ss_pred             CcccCCCCCCEEEeCCCeEEEEEEccCCCCCC--EEEEEEeeccccccc----cceeeeecCCCEEeecccccccCcEEE
Confidence            4455666778999999999999997 577765  568999998765331    012222 35678999999999999999


Q ss_pred             EEEEeCCCceEEEE
Q psy12061        159 CVVKSTVGKISTKT  172 (626)
Q Consensus       159 C~a~n~~g~~~~~~  172 (626)
                      |.|.|..|..+.++
T Consensus        78 C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          78 CFATSHIDFITKSV   91 (105)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEECCCCEEEEE
Confidence            99999999876654

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-11  Score=90.15  Aligned_cols=83  Identities=24%  Similarity=0.429  Sum_probs=67.3

Q ss_pred             ceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEecC
Q psy12061        498 SAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNG  577 (626)
Q Consensus       498 ~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~  577 (626)
                      ++|++..++.+++.|+|+  +|   .+.+.+|.|+|+..+....  .......++.+++.|.||.|++.|.|+|.|++..
T Consensus         1 rnl~v~~~t~~sv~l~W~--~p---~~~~~~Y~v~~~~~~~~~~--~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~   73 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWD--AP---AVTVRYYRITYGETGGNSP--VQEFTVPGSKSTATISGLKPGVDYTITVYAVTGR   73 (91)
T ss_dssp             CCCEEEEECSSCEEEECC--CC---SSCCSEEEEEEEETTCCSC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEECTT
T ss_pred             CCCEEEEeCCCEEEEEEE--cc---ceEecEEEEEEEcCCCCce--eEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCC
Confidence            478899999999999999  44   3578899999887654422  3344556788999999999999999999999999


Q ss_pred             CCCCCCCCcE
Q psy12061        578 GDGRMSSPAI  587 (626)
Q Consensus       578 G~g~~s~~~~  587 (626)
                      |.|++++..+
T Consensus        74 g~s~~~s~~v   83 (91)
T d1fnaa_          74 GDSPASSKPI   83 (91)
T ss_dssp             CCSSCSCCCE
T ss_pred             ccCCCcCCCE
Confidence            9998876443

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.7e-12  Score=92.28  Aligned_cols=85  Identities=16%  Similarity=0.266  Sum_probs=67.2

Q ss_pred             CCCCCCceEEEeeecc-eEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        390 PQVAPQGVFSRGFNST-AINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~-si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      |..||.++++.....+ ++.|+|++|..      +.+.+|+|.|+..+.................+.|.+|+|++.|.|+
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~~------~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~   74 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERSTT------PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVS   74 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCSC------SSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCCC------CCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEE
Confidence            4458999999887654 59999998753      2388999999887765544444555666678999999999999999


Q ss_pred             EEEeeCCCCCCC
Q psy12061        469 VMAYNNAGEGPE  480 (626)
Q Consensus       469 V~a~~~~g~s~~  480 (626)
                      |.|.+..|.|.+
T Consensus        75 V~a~~~~g~s~p   86 (94)
T d1fnfa1          75 VYTVKDDKESVP   86 (94)
T ss_dssp             EEEEETTEECCC
T ss_pred             EEEEcCCCEeCC
Confidence            999999988754

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.6e-12  Score=94.90  Aligned_cols=93  Identities=13%  Similarity=0.015  Sum_probs=65.8

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      .|..+.+...+.+++.|+|+++....    +.+.+|.|+|+....................+.|.+|+|++.|.|+|+|.
T Consensus         9 ~P~~p~~~~~~~~~v~l~W~pp~~~~----~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~   84 (105)
T d2d9qb2           9 MDPSPEAAPPQAGCLQLSWEPWQPGL----HINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCI   84 (105)
T ss_dssp             CCC-------CCSCEEEEEECCGGGT----TSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEE
T ss_pred             CCCCCEeecCCCCeEEEEEcCCCCCC----ceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEE
Confidence            34466677788999999999887544    56899999998776655444443445556679999999999999999999


Q ss_pred             eCCCCCC---CCccEEEeec
Q psy12061        473 NNAGEGP---ESERYLERTY  489 (626)
Q Consensus       473 ~~~g~s~---~s~~~~~~t~  489 (626)
                      |..|.|.   +|..+.++|.
T Consensus        85 n~~g~G~~S~wS~~~~~~t~  104 (105)
T d2d9qb2          85 RWPLPGHWSDWSPSLELRTT  104 (105)
T ss_dssp             ECSSCCCCCCCCCCEEECCC
T ss_pred             eCCCCCCCcCCCCCEEEeCC
Confidence            9999865   4555665553

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6e-12  Score=92.62  Aligned_cols=90  Identities=24%  Similarity=0.404  Sum_probs=69.7

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|. +.+...+.+++.|+|++|...+    |.|.+|.|+|+..+.......  .......++.+.+|.|++.|.|+|+|+
T Consensus         3 ~P~-~~~~~~~~~sv~l~W~pP~~~~----g~i~~Y~i~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~   75 (94)
T d2dn7a1           3 RPT-MMISTTAMNTALLQWHPPKELP----GELLGYRLQYCRADEARPNTI--DFGKDDQHFTVTGLHKGTTYIFRLAAK   75 (94)
T ss_dssp             CCE-EEEEECSTTEEEEEEECCSSCS----SCCCEEEEEEEETTCSSCEEE--EEETTCCEEEEECCCTTCEEEEEEEEE
T ss_pred             CCc-EeEEEEeCCEEEEEEeCCCCCC----CceEEEEEEEEEcCCCCcEEE--EcCCCccEEEEEccCCeeEEEEEEEEE
Confidence            665 4466678899999999886543    679999999988776654433  334555679999999999999999999


Q ss_pred             eCCCCCCCCccEEEeecC
Q psy12061        473 NNAGEGPESERYLERTYR  490 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~  490 (626)
                      |..|.|+.+.. .+.|.+
T Consensus        76 n~~G~g~~s~~-~~~T~e   92 (94)
T d2dn7a1          76 NRAGLGEEFEK-EIRTPE   92 (94)
T ss_dssp             ETTEEEEEEEE-EEECCC
T ss_pred             cCCcCCCCccE-EEeeCC
Confidence            99999987763 455544

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.1e-12  Score=91.30  Aligned_cols=82  Identities=21%  Similarity=0.370  Sum_probs=67.1

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      ||.+|++...+.+++.|+|+  ++.  ++.+.+|.|+|+..+....  ..........+.+.|.||.|++.|.|+|+|++
T Consensus         3 pP~~l~~~~~~~~sv~l~W~--~p~--~~~~~~y~v~y~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWA--PPP--SIDLTNFLVRYSPVKNEED--VAELSISPSDNAVVLTNLLPGTEYVVSVSSVY   76 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEE--CCT--TCCCSEEEEEEEETTCTTC--CEEEEECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCCceEEEEeCCCEEEEEEE--ecC--CCCcceeEEEEEECCCCcc--EEEEEeCCCceEEEEeceeCCCEEEEEEEEEc
Confidence            68999999999999999999  442  4678899999987665432  33445567888999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12061        576 NGGDGRMS  583 (626)
Q Consensus       576 ~~G~g~~s  583 (626)
                      ..|.|++.
T Consensus        77 ~~g~S~p~   84 (91)
T d1fnfa2          77 EQHESTPL   84 (91)
T ss_dssp             TTEECCCE
T ss_pred             CCCCCCCE
Confidence            99987643

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.30  E-value=8e-12  Score=90.36  Aligned_cols=81  Identities=16%  Similarity=0.377  Sum_probs=67.4

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      ++|.+|++..++.+++.|+|++  +   .+.+.+|.|.|+..+...   ..........+.+.+.||.|++.|.|+|.|+
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~--~---~~~~~~Y~i~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTP--P---RSRVDSYRVSYVPITGGT---PNVVTVDGSKTRTKLVKLVPGVDYNVNIISV   73 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECC--C---SSCCSEEEEEEEETTCCC---CEEEEEETTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             cCCcceEEEEecCCEEEEEEEc--c---cEeeceEEEEEEeccCCc---eEEEEecCCccEEEECCCCCCCEEEEEEEEE
Confidence            3688999999999999999993  3   367899999988766542   3344556788899999999999999999999


Q ss_pred             ecCCCCCCC
Q psy12061        575 SNGGDGRMS  583 (626)
Q Consensus       575 ~~~G~g~~s  583 (626)
                      |..|.|++.
T Consensus        74 ~~~g~s~p~   82 (88)
T d1qr4a2          74 KGFEESEPI   82 (88)
T ss_dssp             ETTEECCCE
T ss_pred             eCCCCcCCE
Confidence            999988754

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.8e-12  Score=93.74  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             CCCCceEEEe----eeCCCEEEEEEeecCCC--CCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceE
Q psy12061        494 QKPPSAVHIK----GINPTTVHVTWRYVSPS--FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY  567 (626)
Q Consensus       494 ~~~p~~l~~~----~~~~~~~~l~W~~~~~~--~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y  567 (626)
                      |.||.++.+.    ....+++.|+|++|...  ...+.+..|.+.|+..+..    ..........+.+.+.+|+|++.|
T Consensus         3 P~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~t~Y   78 (104)
T d3d48r2           3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA----EWEIHFAGQQTEFKILSLHPGQKY   78 (104)
T ss_dssp             CCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCS----SCEEEEEETCSEEEECC--CCCEE
T ss_pred             CcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeecccccccc----ceeeeccccccEEEECCCCCCCEE
Confidence            4588898875    33567899999954322  2334567888887765544    223344557788999999999999


Q ss_pred             EEEEEEEecCCC-CCCCCCcEEEee
Q psy12061        568 HMRVLAFSNGGD-GRMSSPAITFQM  591 (626)
Q Consensus       568 ~~~V~a~~~~G~-g~~s~~~~~~~~  591 (626)
                      .|+|+|.|..|. |++|+++ .+++
T Consensus        79 ~~rVrA~n~~G~ws~wS~~~-~v~t  102 (104)
T d3d48r2          79 LVQVRCKPDHGYWSAWSPAT-FIQI  102 (104)
T ss_dssp             EEEEEEEESSSCCCCCCCCE-EEEC
T ss_pred             EEEEEEEeCCCCCCCCcCCE-EEEC
Confidence            999999999997 9999664 4554

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-11  Score=92.49  Aligned_cols=95  Identities=21%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      ||.++++..++.+++.|+|++|......  ..+..|.++++....................+.|.+|+|++.|.|+|+|.
T Consensus         5 pP~~l~v~~~~~~s~~l~W~~p~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           5 APISLQVVHVETHRCNISWEISQASHYF--ERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSCCGGG--TTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCcEEEEEeCCEEEEEEccccccccc--cceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEE
Confidence            8999999999999999999988754332  45678999997776653333333444556779999999999999999999


Q ss_pred             eCCCC----CCCCccEEEeec
Q psy12061        473 NNAGE----GPESERYLERTY  489 (626)
Q Consensus       473 ~~~g~----s~~s~~~~~~t~  489 (626)
                      +..|.    |++|..+.++|.
T Consensus        83 ~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          83 PLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             ESCCSSCCCCCCCCCEEEECC
T ss_pred             ECCCCCCCCCCCcCCEEEECC
Confidence            98875    566777888875

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.6e-12  Score=93.10  Aligned_cols=78  Identities=23%  Similarity=0.430  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEeeeCCC--CCCeeEEEeCCEEcc----------CCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          1 YAGEGGNVTIFCNPEAA--PKPKFVWKKDGNIIG----------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~--p~p~i~W~~~~~~i~----------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      |+..|++|+|.|.....  ....|.|+|++..|.          .+.|..+..+|+|.|.+++.+|+|.|+|.+.+..|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            35689999999975322  234899999998773          246778888999999999999999999999999998


Q ss_pred             c--eeeEEEEEE
Q psy12061         69 D--ESKGRLIVL   78 (626)
Q Consensus        69 ~--~~~~~l~v~   78 (626)
                      .  ...+.|.|+
T Consensus        86 ~~~~~~~~L~V~   97 (98)
T d1hnga1          86 RILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            6  455677774

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=9.6e-12  Score=91.27  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEE-EEecCccceEEEeCCccCceEEEEEEE
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY-YLSRTTRNWALIVGLQPDTKYYVKVMA  471 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~v~V~a  471 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|+|+........... .........+.|.+|.|++.|.|+|+|
T Consensus         3 aP~~l~v~~~~~~sv~v~W~~p~-------~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   75 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWDNSE-------AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISA   75 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS-------SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEEecC-------CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEE
Confidence            78899999999999999999875       4578999999887765443332 233445567999999999999999999


Q ss_pred             eeCCCCCCCCccEEEee
Q psy12061        472 YNNAGEGPESERYLERT  488 (626)
Q Consensus       472 ~~~~g~s~~s~~~~~~t  488 (626)
                      .+..|.|+++ .+.++|
T Consensus        76 ~~~~g~s~p~-~~~~~T   91 (92)
T d1tdqa2          76 VMNSKQSIPA-TMNART   91 (92)
T ss_dssp             EETTEECCCE-EEEEEC
T ss_pred             EeCCCEecCE-EEEEEC
Confidence            9999998766 355555

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-11  Score=94.69  Aligned_cols=86  Identities=27%  Similarity=0.378  Sum_probs=65.7

Q ss_pred             eeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcccc-cee-eecCccceEEecCCCCCceEEEEEEEEecCCCCC
Q psy12061        504 GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN-DTI-IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGR  581 (626)
Q Consensus       504 ~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~L~p~~~Y~~~V~a~~~~G~g~  581 (626)
                      .++++++.|+|++  +. .++.|.+|+|+|+..+....... ... ......+++.|.||.|++.|.|+|+|+|..|.|+
T Consensus        26 ~~s~tsi~v~W~~--p~-~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~  102 (120)
T d1ujta_          26 VLTPTTVQVTWTV--DR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM  102 (120)
T ss_dssp             CCBTTEEEEEEEE--SS-CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred             EeCCCeEEEEecC--CC-CCCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcC
Confidence            3578999999994  33 46789999999987765433222 222 2345678899999999999999999999999999


Q ss_pred             CCCCcEEEeecc
Q psy12061        582 MSSPAITFQMGE  593 (626)
Q Consensus       582 ~s~~~~~~~~~~  593 (626)
                      +|++. .++|.+
T Consensus       103 ~S~~~-~~~T~e  113 (120)
T d1ujta_         103 DSESK-TVRTTE  113 (120)
T ss_dssp             CCCCE-EEEECS
T ss_pred             CCCCE-EEEeCC
Confidence            99654 465554

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-11  Score=89.49  Aligned_cols=81  Identities=19%  Similarity=0.383  Sum_probs=67.7

Q ss_pred             CCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        495 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       495 ~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      .||.+|++...+.+++.|+|+  +|   .+.+.+|.|.|+..++..   ..........+.+.|.+|.||+.|.|+|+|.
T Consensus         3 spP~~l~v~~~~~~si~v~W~--~p---~~~~~~Y~i~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   74 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWR--TK---TETITGFQVDAVPANGQT---PIQRTIKPDVRSYTITGLQPGTDYKIYLYTL   74 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEE--CC---SSCCCCEEEEEEESSSSC---CEEEECCTTCSEEEEESCCTTCEEEEEEEEE
T ss_pred             CcCCCCEEEEecCCEEEEEEE--CC---CCCCceeEEEEEEccCCc---eEEEecCCCccEEEeCCCCCCcEEEEEEEEE
Confidence            378999999999999999999  44   367899999988765532   3345566788999999999999999999999


Q ss_pred             ecCCCCCCC
Q psy12061        575 SNGGDGRMS  583 (626)
Q Consensus       575 ~~~G~g~~s  583 (626)
                      +..|.|++.
T Consensus        75 ~~~g~s~p~   83 (90)
T d1fnha2          75 NDNARSSPV   83 (90)
T ss_dssp             ETTEECCCE
T ss_pred             eCCCCcCCE
Confidence            999988744

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-11  Score=91.94  Aligned_cols=94  Identities=18%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             CCCceEEE----eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        393 APQGVFSR----GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       393 ~p~~~~~~----~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      +|.++.+.    ..+.+++.|+|++|........+.+..|.++++..+.......   .......+.+.+|++++.|.|+
T Consensus         5 pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~r   81 (104)
T d3d48r2           5 PPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIH---FAGQQTEFKILSLHPGQKYLVQ   81 (104)
T ss_dssp             CCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEE---EEETCSEEEECC--CCCEEEEE
T ss_pred             CCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeee---ccccccEEEECCCCCCCEEEEE
Confidence            88888875    3456789999999876554445678899999987776544332   2344556899999999999999


Q ss_pred             EEEeeCCCC-CCCCccEEEeec
Q psy12061        469 VMAYNNAGE-GPESERYLERTY  489 (626)
Q Consensus       469 V~a~~~~g~-s~~s~~~~~~t~  489 (626)
                      |+|.|..|. |++|+.+.++|.
T Consensus        82 VrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          82 VRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             EEEEESSSCCCCCCCCEEEECC
T ss_pred             EEEEeCCCCCCCCcCCEEEECc
Confidence            999999997 999999888764

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-11  Score=94.19  Aligned_cols=87  Identities=25%  Similarity=0.296  Sum_probs=69.3

Q ss_pred             eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc---eEEEEecCccceEEEeCCccCceEEEEEEEeeCCCC
Q psy12061        401 GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET---AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE  477 (626)
Q Consensus       401 ~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~  477 (626)
                      .++.++|.|+|+++...     +.|.+|.|+|+........   ...........++.|.+|+|++.|.|+|+|+|..|.
T Consensus        26 ~~s~tsi~v~W~~p~~~-----~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~  100 (120)
T d1ujta_          26 VLTPTTVQVTWTVDRQP-----QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQ  100 (120)
T ss_dssp             CCBTTEEEEEEEESSCC-----SSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCC
T ss_pred             EeCCCeEEEEecCCCCC-----CcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcC
Confidence            36789999999987532     5699999999877654322   222233455677999999999999999999999999


Q ss_pred             CCCCccEEEeecCCC
Q psy12061        478 GPESERYLERTYRKA  492 (626)
Q Consensus       478 s~~s~~~~~~t~~~~  492 (626)
                      |++|+.+.++|.++.
T Consensus       101 G~~S~~~~~~T~e~~  115 (120)
T d1ujta_         101 GMDSESKTVRTTEES  115 (120)
T ss_dssp             CCCCCCEEEEECSSC
T ss_pred             cCCCCCEEEEeCCCC
Confidence            999999999998763

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=1.3e-11  Score=93.22  Aligned_cols=89  Identities=11%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             CceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecC-CCcceeeeeee--------ecceeeEEEEeCCCcceeE
Q psy12061        291 PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKE--------YGNVGIAVVRIPSEFYYTE  361 (626)
Q Consensus       291 p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~L~p~~~  361 (626)
                      |..+.+...+.++|.|+|.+  +.+++.++.+|.|+|+..+ ...|.......        ........+++++|+|++.
T Consensus         3 P~~p~v~~~~~~sv~l~W~~--P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           3 PTPPNVTRLSDESVMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCEEEECC---EEEEEEE--ECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             CcCCEEEEEECCEEEEEEEe--CccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            33445667788999999999  5677889999999998766 45555433221        1233456789999999999


Q ss_pred             EEEEEEEecCCCCCCCCccE
Q psy12061        362 YEVKVQAINDVGPGPESEVV  381 (626)
Q Consensus       362 Y~~~v~a~n~~g~~~~s~~~  381 (626)
                      |.|||+|.|..|.|.+|...
T Consensus        81 Y~frV~A~N~~G~s~~S~~s  100 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTS  100 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCC
T ss_pred             EEEEEEEEcCCCCCCCCCCC
Confidence            99999999999998877543

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.2e-12  Score=96.70  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=73.7

Q ss_pred             CCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEE
Q psy12061        392 VAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA  471 (626)
Q Consensus       392 ~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a  471 (626)
                      .||+++.+. .+.++|.|+|++|...+    +.|.+|.|+|+..... +...........+.+.+.+|.+++.|.|+|+|
T Consensus         9 sPP~~~~~~-~t~~si~l~W~pp~~~~----~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A   82 (108)
T d1v5ja_           9 SPPRGLVAV-RTPRGVLLHWDPPELVP----KRLDGYVLEGRQGSQG-WEVLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCEEEEEE-ECSSSEEEEEECCSCCS----SCCCBEEEEEEETTCC-CEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CcCCCeEEE-EcCCEEEEEEEecccCC----CceeEEEEEeeeeeee-eeeccccccceeeeEEEEeccCCcEEEEEEEE
Confidence            388899775 57889999999876543    6789999999875543 33333344556677999999999999999999


Q ss_pred             eeCCCCCCCCccEEEeecC
Q psy12061        472 YNNAGEGPESERYLERTYR  490 (626)
Q Consensus       472 ~~~~g~s~~s~~~~~~t~~  490 (626)
                      +|..|.|++|+.+.++|..
T Consensus        83 ~n~~g~s~~S~~~~~~T~~  101 (108)
T d1v5ja_          83 FAGSFVSDPSNTANVSTSG  101 (108)
T ss_dssp             EETTEEEEECSCCCCCCSS
T ss_pred             EeCCCEeCCcCceEEECCC
Confidence            9999999999888888764

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.5e-12  Score=95.56  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++..++.+++.|+|+++.       +.+.+|.|+|+..++....   .........+.|.+|.|++.|.|+|+|+
T Consensus         3 ~P~~l~~~~~t~~si~l~W~~p~-------~~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~V~a~   72 (102)
T d2cuha1           3 GPTQLRALNLTEGFAVLHWKPPQ-------NPVDTYDIQVTAPGAPPLQ---AETPGSAVDYPLHDLVLHTNYTATVRGL   72 (102)
T ss_dssp             SCEEEECCCCSSSCEEEEEECCS-------SCCSEEEEEEECSSSCCEE---EEEETTCSEEEECSCCSSSEEEEEEEEE
T ss_pred             CCCccEEEEeCCCEEEEEEEeee-------ccceeeEEEEEecccccee---eeeeeeeeeEEEccEEeeEEEEEEEEEE
Confidence            78999999999999999999875       4478999999765543322   2334556679999999999999999999


Q ss_pred             eCCCCCCCCccEEEeecCCCCCCCCceEEEe
Q psy12061        473 NNAGEGPESERYLERTYRKAPQKPPSAVHIK  503 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~  503 (626)
                      +..|.|..+. ..++|...    +|.++.+.
T Consensus        73 ~~~~~s~~~~-~~~~T~~~----~P~~l~~~   98 (102)
T d2cuha1          73 RGPNLTSPAS-ITFTTGLE----APRDLEAK   98 (102)
T ss_dssp             ETTEECCCEE-EEEESCCC----CTTTSSSC
T ss_pred             eCCCCcCCEE-EEEECCCC----CCCCCEee
Confidence            9998887653 56777543    45566544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-12  Score=98.27  Aligned_cols=90  Identities=13%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEecccc-----CCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-----LNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      ..++.+.+.+|++++|.|.+.+.|.|.  +.|+|++..+....     .......+....++.|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~v~v~~g~~v~L~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (105)
T d1nbqa1           9 SSEPEVRIPENNPVKLSCAYSGFSSPR--VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCM   86 (105)
T ss_dssp             CSCSBCCEETTCCCEEECEEESCSSEE--EEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEE
T ss_pred             CCCCeEEEeCCCeEEEEEEeCCCCCCe--eEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEE
Confidence            356678899999999999999999874  58999765554321     11111234445667899999999999999999


Q ss_pred             EEeCCCceEEEEEEEEe
Q psy12061        161 VKSTVGKISTKTTVIVE  177 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~  177 (626)
                      |.|..|.....+.|.+.
T Consensus        87 a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          87 VSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEETTSSCEECCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            99999998777766653

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=2.8e-11  Score=90.72  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=71.6

Q ss_pred             CCCceEEE----eeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        393 APQGVFSR----GFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       393 ~p~~~~~~----~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      +|.++.+.    ....+++.|+|++|.......++.+.+|.|+|+..+...+....   ....+.+.+.+|.+++.|.|+
T Consensus         5 pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~r   81 (103)
T d1f6fb2           5 PPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHF---TGHQTQFKVFDLYPGQKYLVQ   81 (103)
T ss_dssp             CCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEE---EETCSEEEECCCCTTCEEEEE
T ss_pred             CCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeec---ccceeEEEeCCCCcceEEEEE
Confidence            88888775    34567899999998765444446788999999887766554322   234556999999999999999


Q ss_pred             EEEeeCCCC-CCCCccEEEee
Q psy12061        469 VMAYNNAGE-GPESERYLERT  488 (626)
Q Consensus       469 V~a~~~~g~-s~~s~~~~~~t  488 (626)
                      |+|.+..|. |++|....+.+
T Consensus        82 Vra~~~~G~wS~wS~~~~~~~  102 (103)
T d1f6fb2          82 TRCKPDHGYWSRWSQESSVEM  102 (103)
T ss_dssp             EEEEESSSCCCCCCCCEEEEC
T ss_pred             EEEEeCCCCCCCCcCceeeEC
Confidence            999999996 88998877654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.4e-12  Score=95.79  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             eCCCceEEecCCcEEEEEEecccCC-cceeEEEeeCCEEeccccCCccCCCeeEec-----CCeEEEeecCCCCCEeEEE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELETPNINID-----GGLLEITNASFADAGEYEC  159 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C  159 (626)
                      ..+++..+.+|+++.|.|.+.+.|. |  .+.|+|++..+....-.   .......     ...|.|.+++.+|+|.|+|
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P--~v~W~k~~~~~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRP--HVTWCKLNGTTCVKLED---RQTSWKEEKNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCC--EEEEEEECSSCEEECCS---SCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCC--EEEEEecCcccccccce---eeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence            3577889999999999999999885 5  56999988766432100   0111111     1259999999999999999


Q ss_pred             EEEeCCCceE-EEEEEEEeC
Q psy12061        160 VVKSTVGKIS-TKTTVIVEG  178 (626)
Q Consensus       160 ~a~n~~g~~~-~~~~l~v~~  178 (626)
                      .|.|..|..+ .++.|.|.+
T Consensus        83 ~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEETTEEEECCCEEEEEEC
T ss_pred             EEEcCCCeEEEEEEEEEEEE
Confidence            9999999864 577887753

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-11  Score=90.62  Aligned_cols=87  Identities=21%  Similarity=0.333  Sum_probs=64.7

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEY  157 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y  157 (626)
                      +|.|+..++....+.+|+++.|.|.+.+ |.|  .+.|+|||..+..+.-    ...+..  ....|.|.++...|+|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~--~v~W~k~g~~i~~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y   77 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELAD-HDA--EVKWLKNGQEIQMSGS----KYIFESIGAKRTLTISQCSLADDAAY   77 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECSS-SSS--CCEEEESSSEECCCSS----SSEEEEETTEEEEEECSCSSSSCEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEECC-CCc--eEEEEEcCccceeeee----eEeeeccCCeEEeecCCCCceecEEE
Confidence            5677777777788999999999999854 665  4589999999975421    122222  234799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEe
Q psy12061        158 ECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       158 ~C~a~n~~g~~~~~~~l~v~  177 (626)
                      +|.|.|    .+.++.|.|.
T Consensus        78 ~c~a~n----~~~s~~l~V~   93 (94)
T d1pd6a_          78 QCVVGG----EKCSTELFVK   93 (94)
T ss_dssp             EEEETT----EEECCEEEEE
T ss_pred             EEEEee----EEEEEEEEEE
Confidence            999865    3455566664

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.5e-12  Score=95.40  Aligned_cols=93  Identities=18%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccC---------CCeeEecCCeEEEeecCC
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE---------TPNINIDGGLLEITNASF  151 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~i~~~~~  151 (626)
                      |.++......+.+..|++++|.|.+.+.|.|.  +.|++||..+.........         ........+.|.|.+++.
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~--i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   79 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDI--AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES   79 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCE--EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCe--EEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence            55554333446778899999999999999875  5899999998754311100         000001124799999999


Q ss_pred             CCCE-eEEEEEEeCCCceEEEEEEE
Q psy12061        152 ADAG-EYECVVKSTVGKISTKTTVI  175 (626)
Q Consensus       152 ~d~g-~Y~C~a~n~~g~~~~~~~l~  175 (626)
                      +|.| .|+|.|.|..|..++.+.|+
T Consensus        80 ~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          80 RFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            9999 59999999999998888876

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=89.40  Aligned_cols=85  Identities=21%  Similarity=0.246  Sum_probs=63.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEEEEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      +..++++..+..|+++.|.|.+. .|.|  .+.|+|+|.++.......   ..+..  ....|.|.+++.+|+|.|+|.|
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~--~v~W~k~~~~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   76 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDA--NVKWFKNGEEIIPGPKSR---YRIRVEGKKHILIIEGATKADAAEYSVMT   76 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSC--CCEEEETTEECCCSTTCS---EEEEEETTEEEEEEEEECTTTCSEEEEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCc--eEEEEEeecccCCCCCcc---EEEEEeCCccEEEECccccccCEEEEEEE
Confidence            45578899999999999999985 5655  458999999987653100   11222  2348999999999999999998


Q ss_pred             EeCCCceEEEEEEEEeC
Q psy12061        162 KSTVGKISTKTTVIVEG  178 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~~  178 (626)
                      .|    .+.++.|.|+.
T Consensus        77 ~n----~~~~a~l~V~~   89 (90)
T d1x44a1          77 TG----GQSSAKLSVDL   89 (90)
T ss_dssp             TT----EEEEEEEEEEC
T ss_pred             ec----ceEEEEEEEEE
Confidence            66    45567777754

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.27  E-value=6e-12  Score=89.98  Aligned_cols=76  Identities=24%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ...|+...+.+|++++|.|.+.+.|.+. .+.|++||..+..             .+..|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~~~~~~~~-~~~w~~~g~~~~~-------------~~~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           8 KLEPQWINVLQEDSVTLTCRGTHSPESD-SIQWFHNGNLIPT-------------HTQPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             EEESCCSEEETTCEEEEEEECSSCCCTT-CCEEEETTEECTT-------------CCSSEEEEECCGGGCEEEEEECTTS
T ss_pred             EECCCCeEEcCCCeEEEEEEEeecccee-EEEeecccccccc-------------cccceEEeeccccCCcEEEEECCCC
Confidence            3346778899999999999999988763 5789999998864             3457999999999999999999876


Q ss_pred             CCceEEEEEEEE
Q psy12061        165 VGKISTKTTVIV  176 (626)
Q Consensus       165 ~g~~~~~~~l~v  176 (626)
                      .++  ..+.|.|
T Consensus        74 ~~S--~~v~l~V   83 (85)
T d2fcba1          74 SLS--DPVHLTV   83 (85)
T ss_dssp             BCC--CCEEEEE
T ss_pred             ccc--ccEEEEE
Confidence            543  3445554

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.3e-12  Score=91.80  Aligned_cols=79  Identities=24%  Similarity=0.460  Sum_probs=63.6

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.+|++...+.+++.|+|+  +|   .+.+.+|.|+|+..+.....  .......+.+.+.|.+|.|++.|.|+|+|+|
T Consensus         3 aP~nl~v~~~~~~s~~l~W~--~p---~~~i~~Y~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n   75 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQ--PP---RARITGYIIKYEKPGSPPRE--VVPRPRPGVTEATITGLEPGTEYTIYVIALK   75 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEE--CC---SSCCSEEEEEEECTTSCCEE--CTTCCCTTCCEEEEESCCTTCEEEEEEEEES
T ss_pred             cCcCCEEEEecCCEEEEEEe--CC---CcCCceEEEEEeeccCCccE--EEEEcCCCccEEEEEeeeCCCEEEEEEEEEc
Confidence            68899999999999999999  44   36789999998765544221  2223455678899999999999999999999


Q ss_pred             cCCCCC
Q psy12061        576 NGGDGR  581 (626)
Q Consensus       576 ~~G~g~  581 (626)
                      ..|.|+
T Consensus        76 ~~g~S~   81 (89)
T d1fnha3          76 NNQKSE   81 (89)
T ss_dssp             SSCEEE
T ss_pred             CCCEeC
Confidence            988765

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.6e-12  Score=95.27  Aligned_cols=92  Identities=15%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             CCceEEecCCcEEE---EEEecccCCcceeEEEeeCCEEeccccCCccC----CCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         88 PPKITIAAHRNLQL---RCSAHTEELLDVAYIWTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        88 ~~~~~v~~g~~~~l---~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.++.+..|....+   .|.+.|.|.|.  +.|++||.++.........    ..........|.|.+++..|+|.|+|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~--v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   81 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPS--LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL   81 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCE--EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCe--EEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEE
Confidence            55566666666554   55899999875  5899999998754311000    000011224699999999999999999


Q ss_pred             EEeCCCceEEEEEEEEeCCCC
Q psy12061        161 VKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      |.|..|..+..+.|.|..+|.
T Consensus        82 A~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          82 AANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EEETTEEEEEEEEECCCSCTT
T ss_pred             EEeCCCEEEEEEEEEEEcCCC
Confidence            999999999999999998884

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.5e-12  Score=102.41  Aligned_cols=111  Identities=23%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             eecCCCCCCCCceEEEeeeCCCEEEEEEeecCCCCCCC---------ceeeEEEEEEEeccCCccccceeeecCccceEE
Q psy12061        487 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE---------PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDAD  557 (626)
Q Consensus       487 ~t~~~~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~---------~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (626)
                      ++.+..|. .+....+..++.+++.|+|++  |...++         .+..|.+.+......   ...........+.+.
T Consensus        12 ~~~~~~~~-~~~~P~V~~v~~~sv~l~W~~--P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~---~~~~~~~~~~~~~~~   85 (137)
T d1wk0a_          12 KAFEALLS-NIVKPVASDIQARTVVLTWSP--PSSLINGETDESSVPELYGYEVLISSTGKD---GKYKSVYVGEETNIT   85 (137)
T ss_dssp             HHHHHHTT-CCCCCEEESCCSSCEEEECCC--CCCCSTTSSCSSCSCSCCEEEEEECSSCTT---SCCEEEEEESCSEEE
T ss_pred             EEeccCCC-CCCCCEEEEeEcCEEEEEEeC--cCcCCCceeeccccceEEeeEEEEeeCCCC---ccEEEEEecCccEEE
Confidence            34444444 334456778899999999995  333222         456788876543322   122344556788999


Q ss_pred             ecCCCCCceEEEEEEEEecCCCCCCCCCcEEEeeccccccccCCcce
Q psy12061        558 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPAL  604 (626)
Q Consensus       558 l~~L~p~~~Y~~~V~a~~~~G~g~~s~~~~~~~~~~~~~~~~~~~~~  604 (626)
                      |.+|.|++.|.|+|+|+|..|.|++|.++. |+|...++..+..+.+
T Consensus        86 i~~L~P~t~Y~f~V~A~n~~G~g~~S~~~~-~~T~~~~P~~p~~p~i  131 (137)
T d1wk0a_          86 LNDLKPAMDYHAKVQAEYNSIKGTPSEAEI-FTTLSCEPDIPNPPRI  131 (137)
T ss_dssp             ECSCCTTCEECEEEEEEETTEECCCCCCCC-EECCCSSSCCCSCSCC
T ss_pred             ECCCCCCcEEEEEEEEEcCCcccCCCCCEE-EECCCCCCCCCCCCEE
Confidence            999999999999999999999999997654 7776655545544443

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-11  Score=89.44  Aligned_cols=81  Identities=23%  Similarity=0.352  Sum_probs=66.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++..++.+++.|+|++|.       +.+.+|.|+|+..+....... .......+++.|.+|+|++.|.|+|+|.
T Consensus         3 ~P~~l~v~~vt~~sv~l~W~~p~-------~~~~~Y~i~~~~~~~~~~~~~-~~v~~~~~~~~i~~L~p~t~Y~~~V~a~   74 (89)
T d1fnfa3           3 SPTGIDFSDITANSFTVHWIAPR-------ATITGYRIRHHPEHFSGRPRE-DRVPHSRNSITLTNLTPGTEYVVSIVAL   74 (89)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS-------SCCSEEEEEEECSCCSSCCEE-EEEETTCCEEEEESCCTTCEEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEEeCC-------CEEeeEEEEEEECCCCCceEE-EEECCCccEEEECCCcccCEEEEEEEEE
Confidence            78999999999999999999875       447899999987766544433 3335566779999999999999999999


Q ss_pred             eCCCCCCCC
Q psy12061        473 NNAGEGPES  481 (626)
Q Consensus       473 ~~~g~s~~s  481 (626)
                      +..|.|++.
T Consensus        75 ~~~g~s~p~   83 (89)
T d1fnfa3          75 NGREESPLL   83 (89)
T ss_dssp             ETTEECCCE
T ss_pred             cCCcCcCCE
Confidence            999987653

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.2e-12  Score=95.08  Aligned_cols=95  Identities=17%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             CCCCCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        287 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       287 p~~~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      |+.+|.++.+...+.++|.|+|++ |..+++..+..|.++++..+...|......   ......+++.+|.|++.|.|+|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~-P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~frV   77 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWLKANFS---NILENEFTVSGLTEDAAYEFRV   77 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCC-CSCCTTCCCSCCEEEEEETTSCCCEECCCS---CCCSSEEEECSCCSSCCEEEEE
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEe-ccccCcceEEEEEEEeecccccceeEEEee---ccceeEEEEcCCCCCCEEEEEE
Confidence            456777777777788999999997 345666789999999998886666544322   2234567899999999999999


Q ss_pred             EEecCCCC-CCCCccEEEEc
Q psy12061        367 QAINDVGP-GPESEVVTIFS  385 (626)
Q Consensus       367 ~a~n~~g~-~~~s~~~~~~t  385 (626)
                      +|+|..|. |.+|......+
T Consensus        78 ~A~n~~G~~s~~S~~s~~vt   97 (104)
T d1bpva_          78 IAKNAAGAISPPSEPSDAIT   97 (104)
T ss_dssp             EEECTTSCEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCcCCCCCEE
Confidence            99999996 66776665444

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-11  Score=90.96  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             eEEecCCcEEEEE------EecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         91 ITIAAHRNLQLRC------SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        91 ~~v~~g~~~~l~C------~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ..+..|....|.|      .+.++|.|.+  .|+|||.++....      .+....++.|.|.+++.+|+|.|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i--~W~kdg~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKL--QWYKDCKPLLLDN------IHFSGVKDRLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCC--EEEETTEECCCCS------SSEEEETTEEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEE--EEEECCccccCCC------cEEEecCCEEEEcccccccCcEEEEEEEEC
Confidence            4688999999999      5678887755  8999999997643      456667889999999999999999999998


Q ss_pred             CCce
Q psy12061        165 VGKI  168 (626)
Q Consensus       165 ~g~~  168 (626)
                      .|..
T Consensus        81 ~~g~   84 (103)
T d1iray2          81 YLGK   84 (103)
T ss_dssp             ETTE
T ss_pred             cCCE
Confidence            7754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-12  Score=98.60  Aligned_cols=86  Identities=21%  Similarity=0.295  Sum_probs=63.7

Q ss_pred             CCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccC----CCeeEecCCeEEEeecCCCCCEeEEEEEE
Q psy12061         88 PPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      .....+.+|++++|.|.+. +.|.|  .+.|+|||..+.........    ........+.|.|.+++.+|+|.|+|.|.
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~g~p~p--~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   86 (104)
T d1nbqa2           9 NIPSSATIGNRAVLTCSEQDGSPPS--EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR   86 (104)
T ss_dssp             CCBSEEETTSCEEECCCCCSCBSCC--EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEE
T ss_pred             CCCCEEecCCcEEEEEEeecCCCCC--EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEE
Confidence            4456789999999999985 67776  56899999998655311111    11122245789999999999999999999


Q ss_pred             eCCCceEEEEEEE
Q psy12061        163 STVGKISTKTTVI  175 (626)
Q Consensus       163 n~~g~~~~~~~l~  175 (626)
                      |..|....++.+.
T Consensus        87 N~~G~~~~s~~v~   99 (104)
T d1nbqa2          87 NGYGTPMTSNAVR   99 (104)
T ss_dssp             CSSSCCEECCCBC
T ss_pred             ECCCceEEEEEEE
Confidence            9999886655443

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-11  Score=89.29  Aligned_cols=87  Identities=21%  Similarity=0.239  Sum_probs=69.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|.|+..+....... .........++|.+|+|++.|.|+|+|.
T Consensus         4 ~P~~l~v~~~s~~s~~l~W~~p~-------~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (90)
T d1tena_           4 APSQIEVKDVTDTTALITWFKPL-------AEIDGIELTYGIKDVPGDRTT-IDLTEDENQYSIGNLKPDTEYEVSLISR   75 (90)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCS-------SCCSEEEEEEEETTCTTCCEE-EEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCcEEEEecCCEEEEEEEeCc-------eEeccEEEEEEEcCCCceeEE-EEecCCcceeeEeeecCCCEEEEEEEEE
Confidence            78999999999999999999875       447899999987766543332 3345566779999999999999999999


Q ss_pred             eCCCCCCCCccEEEee
Q psy12061        473 NNAGEGPESERYLERT  488 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t  488 (626)
                      +..|.|+++. ..+.|
T Consensus        76 ~~~g~s~~~~-~~~~T   90 (90)
T d1tena_          76 RGDMSSNPAK-ETFTT   90 (90)
T ss_dssp             ETTEECCCEE-EEEEC
T ss_pred             eCCCEeCCEE-EEEEC
Confidence            9999887653 44443

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.2e-11  Score=89.75  Aligned_cols=83  Identities=18%  Similarity=0.348  Sum_probs=67.9

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|..      +.+.+|.|+|+..+..... ..........+++|.+|+|++.|.|+|+|.
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~~------~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~   80 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLNS------STIIGYRITVVAAGEGIPI-FEDFVDSSVGYYTVTGLEPGIDYDISVITL   80 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCCC------SSCCEEEEEEEEETSCCEE-EEEECCSSCSEEEECCCCTTSEEEEEEEEE
T ss_pred             cCCCeEEEEEcCCEEEEEEEecCC------ceEEeEEEEEEEeeccceE-EEEEeCCCCeEEEEecccCCEEEEEEEEEE
Confidence            688999999999999999998753      3488999999877665433 233445566779999999999999999999


Q ss_pred             eCCCCCCCCc
Q psy12061        473 NNAGEGPESE  482 (626)
Q Consensus       473 ~~~g~s~~s~  482 (626)
                      |..|.|+++.
T Consensus        81 ~~~g~s~p~~   90 (95)
T d2fnba_          81 INGGESAPTT   90 (95)
T ss_dssp             ETTEECCCCE
T ss_pred             eCCcEeCCEE
Confidence            9999887763

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.26  E-value=7.8e-12  Score=89.04  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             eeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEE
Q psy12061         83 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK  162 (626)
Q Consensus        83 ~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~  162 (626)
                      .+...|....+.+|++++|.|.+.+.|.+. .+.|+++|..+..             ....|.|.+++.+|+|.|+|.|.
T Consensus         7 vi~~~P~~~~v~~G~~vtL~C~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           7 VVFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISS-------------QASSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             EEEEESCCSEEETTCCEEEEEECCCBTTBC-CCEEEETTEEEES-------------SCSEEEESSCCGGGCEEEEEECS
T ss_pred             EEEECCCCcEEeCCCeEEEEEEeccCCCCe-EEEEeeeceeeee-------------cceeeEecCCcccCCEEEEEEcc
Confidence            344456778899999999999999998875 4578999988754             34579999999999999999998


Q ss_pred             eCCCceEEEEEEE
Q psy12061        163 STVGKISTKTTVI  175 (626)
Q Consensus       163 n~~g~~~~~~~l~  175 (626)
                      |..+  +..+.|.
T Consensus        73 ~s~~--S~~v~L~   83 (84)
T d1fnla1          73 LSTL--SDPVQLE   83 (84)
T ss_dssp             SSCC--CCCEEEE
T ss_pred             CCCc--cccEEEE
Confidence            7644  3344443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.25  E-value=5.4e-12  Score=90.24  Aligned_cols=67  Identities=22%  Similarity=0.383  Sum_probs=55.1

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV   77 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v   77 (626)
                      |.+|++++|.|.+.+.|.+ .+.|+|||..+...       ++.|.|.+++.+|+|.|+|.|.|..++  ..+.|.|
T Consensus        16 v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-------~~~l~i~~v~~~dsG~Y~C~a~ns~~S--~~v~l~V   83 (85)
T d2fcba1          16 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-------TQPSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTV   83 (85)
T ss_dssp             EETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-------CSSEEEEECCGGGCEEEEEECTTSBCC--CCEEEEE
T ss_pred             EcCCCeEEEEEEEeeccceeEEEeeccccccccc-------ccceEEeeccccCCcEEEEECCCCccc--ccEEEEE
Confidence            5689999999999999877 79999999988643       356999999999999999999876443  3355655

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=9.6e-12  Score=93.08  Aligned_cols=89  Identities=11%  Similarity=0.266  Sum_probs=67.1

Q ss_pred             CCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc-----cCCccCCCeeEecCCeEEEeecCCCCCEeEEEEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      ++.++.+.+|++++|.|.+.+.|.|.  +.|++++......     ........+....+++|.|.+++.+|+|.|+|.|
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a   84 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPR--VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMV   84 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEE--EEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCe--EEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEE
Confidence            56778999999999999999998874  5899854433221     1111113445556789999999999999999999


Q ss_pred             EeCCCceEEEEEEEEe
Q psy12061        162 KSTVGKISTKTTVIVE  177 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~  177 (626)
                      .|..|.....+.+.+.
T Consensus        85 ~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          85 SEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EETTSSSEEEEEEEEE
T ss_pred             EECCCCEEEEEEEEEE
Confidence            9999998777666553

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4e-11  Score=87.75  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEE
Q psy12061        494 QKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA  573 (626)
Q Consensus       494 ~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a  573 (626)
                      |.+|.+|++...+.+++.|+|+  +|.  .+.+..|+|+|+..+..    ..........+.+.+.+|.|++.|.|+|+|
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~--~p~--~~~~~~y~v~y~~~~~~----~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa   74 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWN--NRF--LNHCLEHLVQYRTDWDH----SWTEQSVDYRHKFSLPSVDGQKRYTFRVRS   74 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEE--CSS--CSTTCEEEEEEEETTCS----SCEEEEECSSCEEEECSCCTTSCEEEEEEE
T ss_pred             CcCCCCCEEEEEeCCEEEEEEC--CCC--CceeEEEEEEEEcCCCc----eeeEeeecccceeEcCCCCCCCEEEEEEEE
Confidence            4589999999999999999999  443  34567899999876544    223334456789999999999999999999


Q ss_pred             EecCC
Q psy12061        574 FSNGG  578 (626)
Q Consensus       574 ~~~~G  578 (626)
                      .+..+
T Consensus        75 ~~~~~   79 (95)
T d2b5ic1          75 RFNPL   79 (95)
T ss_dssp             ECCSS
T ss_pred             eeCCC
Confidence            97765

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=6.8e-12  Score=95.50  Aligned_cols=86  Identities=20%  Similarity=0.332  Sum_probs=62.0

Q ss_pred             eEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCcc---CCCe--eEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         91 ITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNEL---ETPN--INIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ..+.+|++++|.|.+. +.|.+  ++.|+|++..+........   ....  .....+.|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   89 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPS--EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG   89 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCC--EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEecCCeEEEEEEeecCCCCC--EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEEC
Confidence            3688999999999986 67765  5699999998865421111   1111  2224568999999999999999999999


Q ss_pred             CCceEE--EEEEEEeC
Q psy12061        165 VGKIST--KTTVIVEG  178 (626)
Q Consensus       165 ~g~~~~--~~~l~v~~  178 (626)
                      .|....  .+.|.|..
T Consensus        90 ~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          90 YGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SSCCEECCCEEEEEES
T ss_pred             CCcEEEEEEEEEEEEe
Confidence            997754  55666654

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=91.08  Aligned_cols=85  Identities=8%  Similarity=-0.060  Sum_probs=66.8

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .||.+|.++++...+.+++.|+|+  ++.+.+ ..++|.|.|+..+....  ............+.+.+|.+++.|.|+|
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~--p~~~~~-~~~~y~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~Y~f~V   76 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWD--GGRETH-LETNFTLKSEWATHKFA--DCKAKRDTPTSCTVDYSTVYFVNIEVWV   76 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEE--CCSCCS-SCCEEEEEEEETTEECC--CEECCSSCTTEEECSSCCCTTSCEEEEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEe--CcccCC-CceEEEEEEEEccccee--EeecccccceeeeeeeecCCCcEEEEEE
Confidence            477899999999999999999999  555544 45789998876654322  2223334566778889999999999999


Q ss_pred             EEEecCCCCC
Q psy12061        572 LAFSNGGDGR  581 (626)
Q Consensus       572 ~a~~~~G~g~  581 (626)
                      +|.|..|.|.
T Consensus        77 ~A~N~~G~s~   86 (95)
T d1bqua1          77 EAENALGKVT   86 (95)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEeCCcccc
Confidence            9999999886

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.1e-11  Score=87.27  Aligned_cols=80  Identities=20%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             CceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEeeC
Q psy12061        395 QGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNN  474 (626)
Q Consensus       395 ~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~  474 (626)
                      ++|++...+.+++.|+|++|.       +.+.+|.|+|+..+........ ........+.|.+|.|++.|.|+|.|.+.
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~-------~~~~~Y~v~~~~~~~~~~~~~~-~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~   72 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPA-------VTVRYYRITYGETGGNSPVQEF-TVPGSKSTATISGLKPGVDYTITVYAVTG   72 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCS-------SCCSEEEEEEEETTCCSCCEEE-EEETTCCEEEECSCCTTCEEEEEEEEECT
T ss_pred             CCCEEEEeCCCEEEEEEEccc-------eEecEEEEEEEcCCCCceeEEE-EeCCCccEEEeCCCCCCCEEEEEEEEEeC
Confidence            478899999999999999875       4478999999887665443332 33455667999999999999999999999


Q ss_pred             CCCCCCCc
Q psy12061        475 AGEGPESE  482 (626)
Q Consensus       475 ~g~s~~s~  482 (626)
                      .|.|+.+.
T Consensus        73 ~g~s~~~s   80 (91)
T d1fnaa_          73 RGDSPASS   80 (91)
T ss_dssp             TCCSSCSC
T ss_pred             CccCCCcC
Confidence            99987653

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-13  Score=102.48  Aligned_cols=97  Identities=16%  Similarity=0.173  Sum_probs=75.4

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceE-EEEecCccceEEEeCCccCceEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV-YYLSRTTRNWALIVGLQPDTKYYV  467 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~v  467 (626)
                      .|+..|..+++..++.+++.|+|++|...    +|.|.+|.|+|+..+....... ..........+.+.+|++++ |.|
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~----ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~   77 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEP----NGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSV   77 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSC----SSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCC----cceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEE
Confidence            44557778888888999999999988654    3789999999977665433221 11233444568899999975 999


Q ss_pred             EEEEeeCCCCCCCCccEEEeecC
Q psy12061        468 KVMAYNNAGEGPESERYLERTYR  490 (626)
Q Consensus       468 ~V~a~~~~g~s~~s~~~~~~t~~  490 (626)
                      +|+|.|..|.|++|+.+.|.|.+
T Consensus        78 rV~A~n~~G~g~~S~~v~f~~~e  100 (102)
T d2dtge1          78 RIRATSLAGNGSWTEPTYFYVTD  100 (102)
T ss_dssp             CCCEEETTBCCCCCCCCEECCCC
T ss_pred             EEEEEcCCccCCCCCCEEEEccC
Confidence            99999999999999999998865

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.5e-11  Score=87.67  Aligned_cols=89  Identities=15%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             CCCceEEEeee--cceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEE
Q psy12061        393 APQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVM  470 (626)
Q Consensus       393 ~p~~~~~~~~~--~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~  470 (626)
                      +|.++.+....  .+++.|+|++|..      +.|.+|+|+|+..+....... .........++|.+|+|++.|.|+|.
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~~------~~i~~Y~i~y~~~~~~~~~~~-~~v~~~~~~~~l~gL~P~t~Y~v~v~   74 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQP------SHISKYILRWRPKNSVGRWKE-ATIPGHLNSYTIKGLKPGVVYEGQLI   74 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCSS------SCEEEEEEEEEETTCSSCCEE-EEECSSCCEEEECSCCSSEEEEEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEeecccc------cceeEEEEEEeeccccceeee-eccCCCccEEEECCcccCcEEEEEEE
Confidence            56677776554  4799999999852      459999999988765543322 34456667799999999999999999


Q ss_pred             EeeCCCCCCCCccEEEeec
Q psy12061        471 AYNNAGEGPESERYLERTY  489 (626)
Q Consensus       471 a~~~~g~s~~s~~~~~~t~  489 (626)
                      |+|..|.|+.+. ..|+|.
T Consensus        75 av~~~G~s~~~~-~~~tT~   92 (93)
T d1owwa_          75 SIQQYGHQEVTR-FDFTTT   92 (93)
T ss_dssp             EEESSSCEEEEE-EEEEEC
T ss_pred             EEeCCCccCcEE-EEEEec
Confidence            999999987764 566653

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.2e-12  Score=90.80  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCceE
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS  169 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~~  169 (626)
                      +..+.+|+++.|.|.+.+ |.|  .+.|.++|..+....     .......++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~--~v~W~~~g~~l~~~~-----~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLA--RVFWKFQNGVLKAES-----PKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTC--EEEEEESSSBCCCCS-----SSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             heeEeCCCEEEEEEEeec-cCC--ceeeecCcccceeee-----eeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            467899999999999998 444  558999999987643     122234677899999999999999999999988766


Q ss_pred             EEEEEE
Q psy12061        170 TKTTVI  175 (626)
Q Consensus       170 ~~~~l~  175 (626)
                      ....|.
T Consensus        78 ~~~~l~   83 (92)
T d1olza1          78 VFQVVA   83 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555443

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=2.7e-11  Score=87.48  Aligned_cols=80  Identities=19%  Similarity=0.354  Sum_probs=66.8

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++..++.+++.|+|+++.       +.+.+|.|+|+..+.......  ........+.+.+|.|++.|.|+|.|.
T Consensus         3 ~P~~l~v~~v~~~s~~l~W~~~~-------~~~~~Y~i~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (88)
T d1qr4a2           3 SPKGISFSDITENSATVSWTPPR-------SRVDSYRVSYVPITGGTPNVV--TVDGSKTRTKLVKLVPGVDYNVNIISV   73 (88)
T ss_dssp             CCSCEEEESCCSSCEEEEECCCS-------SCCSEEEEEEEETTCCCCEEE--EEETTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             CCcceEEEEecCCEEEEEEEccc-------EeeceEEEEEEeccCCceEEE--EecCCccEEEECCCCCCCEEEEEEEEE
Confidence            78899999999999999999875       458899999988777654433  334556679999999999999999999


Q ss_pred             eCCCCCCCC
Q psy12061        473 NNAGEGPES  481 (626)
Q Consensus       473 ~~~g~s~~s  481 (626)
                      |..|.|++.
T Consensus        74 ~~~g~s~p~   82 (88)
T d1qr4a2          74 KGFEESEPI   82 (88)
T ss_dssp             ETTEECCCE
T ss_pred             eCCCCcCCE
Confidence            999987653

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.5e-11  Score=87.58  Aligned_cols=88  Identities=19%  Similarity=0.253  Sum_probs=70.2

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++..++.+++.|+|++|.       +.+.+|.|+|.......... .........++++.+|.|++.|.|+|+|+
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~-------~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN-------VQLTGYRVRVTPKEKTGPMK-EINLAPDSSSVVVSGLMVATKYEVSVYAL   73 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS-------SCCSEEEEEEEESSSCSCCC-EEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCEEEEEecCCEEEEEEEccc-------eeccceEEEEEeeeCCCceE-EEEeCCCCeEEEEecccCceEEEEEEEEE
Confidence            78999999999999999999875       33668999887766554433 33445566779999999999999999999


Q ss_pred             eCCCCCCCCccEEEeec
Q psy12061        473 NNAGEGPESERYLERTY  489 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~  489 (626)
                      |..|.|+.+. ..+.|.
T Consensus        74 n~~g~s~~~~-~~~~T~   89 (90)
T d1fnha1          74 KDTLTSRPAQ-GVVTTL   89 (90)
T ss_dssp             ETTEECCCEE-EEEECC
T ss_pred             eCCCCcCCEe-EEEEcC
Confidence            9999998874 445554

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=4.5e-11  Score=86.19  Aligned_cols=85  Identities=13%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|+|+..+....   ..........+.|.+|.|++.|.|+|+|+
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~-------~~~~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~   71 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPV-------AKFDRYRLTYVSPSGKKN---EMEIPVDSTSFILRGLDAGTEYTISLVAE   71 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS-------SCCSEEEEEEECTTCCEE---EEEECTTCSEEEEESCCSSCEEEEEEEEE
T ss_pred             cCcCcEEEEecCCEEEEEEECCC-------CCcceeEEEeecCCccee---EEeCCCCcCEEEECCCCcCCEEEEEEEEE
Confidence            68899999999999999999875       347799999977654322   22345566779999999999999999999


Q ss_pred             eCCCCCCCCccEEEee
Q psy12061        473 NNAGEGPESERYLERT  488 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t  488 (626)
                      +..|.|+++. +.+.|
T Consensus        72 ~~~~~s~~~~-~~~~T   86 (87)
T d1qr4a1          72 KGRHKSKPTT-IKGST   86 (87)
T ss_dssp             SSSCBCCCEE-EEEEC
T ss_pred             cCCCCccCEE-EEEEc
Confidence            9999887653 44544

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.3e-11  Score=86.89  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=66.2

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      ||.++++...+.+++.|+|++|.       +.+.+|.|+|+..++...  ...........+.+.+|+|++.|.|+|+|.
T Consensus         4 pP~~l~v~~~~~~si~v~W~~p~-------~~~~~Y~i~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   74 (90)
T d1fnha2           4 PPRRARVTDATETTITISWRTKT-------ETITGFQVDAVPANGQTP--IQRTIKPDVRSYTITGLQPGTDYKIYLYTL   74 (90)
T ss_dssp             CCEEEEEEEECSSEEEEEEECCS-------SCCCCEEEEEEESSSSCC--EEEECCTTCSEEEEESCCTTCEEEEEEEEE
T ss_pred             cCCCCEEEEecCCEEEEEEECCC-------CCCceeEEEEEEccCCce--EEEecCCCccEEEeCCCCCCcEEEEEEEEE
Confidence            78999999999999999999875       458899999987665433  233445666789999999999999999999


Q ss_pred             eCCCCCCCC
Q psy12061        473 NNAGEGPES  481 (626)
Q Consensus       473 ~~~g~s~~s  481 (626)
                      +..|.|++.
T Consensus        75 ~~~g~s~p~   83 (90)
T d1fnha2          75 NDNARSSPV   83 (90)
T ss_dssp             ETTEECCCE
T ss_pred             eCCCCcCCE
Confidence            999987743

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.6e-11  Score=87.76  Aligned_cols=81  Identities=22%  Similarity=0.316  Sum_probs=66.1

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|+++..      +.+.+|.|+|+..+....... .........+.|.+|+|++.|.|+|+|.
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~~------~~~~~y~v~y~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPPS------IDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVLTNLLPGTEYVVSVSSV   75 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCTT------CCCSEEEEEEEETTCTTCCEE-EEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCceEEEEeCCCEEEEEEEecCC------CCcceeEEEEEECCCCccEEE-EEeCCCceEEEEeceeCCCEEEEEEEEE
Confidence            689999999999999999998752      447899999987776544333 3345566779999999999999999999


Q ss_pred             eCCCCCCC
Q psy12061        473 NNAGEGPE  480 (626)
Q Consensus       473 ~~~g~s~~  480 (626)
                      +..|.|++
T Consensus        76 ~~~g~S~p   83 (91)
T d1fnfa2          76 YEQHESTP   83 (91)
T ss_dssp             ETTEECCC
T ss_pred             cCCCCCCC
Confidence            99988764

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=90.91  Aligned_cols=81  Identities=19%  Similarity=0.423  Sum_probs=65.3

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEEEEEe
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS  575 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~~  575 (626)
                      +|.+|++..++.+++.|+|+  +|   .+.+.+|.|.|+.......  ..........+++.+.+|.|++.|.|+|+|+|
T Consensus         4 ~P~~l~v~~vt~~sv~l~W~--~p---~~~~~~y~i~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (94)
T d1j8ka_           4 RPKGLAFTDVDVDSIKIAWE--SP---QGQVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAELQGLRPGSEYTVSVVALH   76 (94)
T ss_dssp             CCCCCEEEEEETTEEEEECC--CC---SSCCSCEEEEEEETTTEEE--EECCCCCSSCCEEEECSCCCCSEEEEEEEECS
T ss_pred             CCCCCEEEEecCCEEEEEEe--CC---CccccceEEEEEeecCCCc--eEEEecCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            67899999999999999999  44   3568899999876654322  22334456788999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12061        576 NGGDGRMS  583 (626)
Q Consensus       576 ~~G~g~~s  583 (626)
                      ..|.|.+.
T Consensus        77 ~~g~S~p~   84 (94)
T d1j8ka_          77 DDMESQPL   84 (94)
T ss_dssp             SSCCCCCE
T ss_pred             CCCCcCCE
Confidence            99987754

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6e-11  Score=88.95  Aligned_cols=93  Identities=18%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             CCCceEEEeeeC------CCEEEEEEeecCCC--CCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCce
Q psy12061        495 KPPSAVHIKGIN------PTTVHVTWRYVSPS--FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR  566 (626)
Q Consensus       495 ~~p~~l~~~~~~------~~~~~l~W~~~~~~--~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~  566 (626)
                      .||.+|.+...+      ..++.|+|++|...  ..+..+..|+|+|+..+..    ..........+.+.|.+|.+++.
T Consensus         2 dPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~----~w~~~~~~~~~~~~i~~L~~~t~   77 (106)
T d1axib2           2 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET----KWKMMDPILTTSVPVYSLKVDKE   77 (106)
T ss_dssp             CCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCS----SCEECCCBSSSEEEEEEEETTSC
T ss_pred             cCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCc----cceeeeecccceEEECCCCCCCE
Confidence            588898875443      34799999953322  2233677899998876654    23334445678999999999999


Q ss_pred             EEEEEEEEecCCC--CCCCCCcEEEeec
Q psy12061        567 YHMRVLAFSNGGD--GRMSSPAITFQMG  592 (626)
Q Consensus       567 Y~~~V~a~~~~G~--g~~s~~~~~~~~~  592 (626)
                      |.|+|+|.+..|.  |++|++ +.++++
T Consensus        78 Y~frVRa~~~~~g~ws~wS~~-v~v~~P  104 (106)
T d1axib2          78 YEVRVRSKQRNSGNYGEFSEV-LYVTLP  104 (106)
T ss_dssp             EEEEEEEEETTSSCCCCCCCC-EEECCC
T ss_pred             EEEEEEEEECCCCCCCCCCCC-EEEECC
Confidence            9999999987653  888865 334443

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.6e-11  Score=89.13  Aligned_cols=95  Identities=15%  Similarity=0.140  Sum_probs=70.9

Q ss_pred             CCCceEEEeee------cceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEE
Q psy12061        393 APQGVFSRGFN------STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYY  466 (626)
Q Consensus       393 ~p~~~~~~~~~------~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  466 (626)
                      ||.++.+....      ..++.|+|++|..........+..|.|+|+..+...+..   ........+.+.+|.+++.|.
T Consensus         3 PP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~---~~~~~~~~~~i~~L~~~t~Y~   79 (106)
T d1axib2           3 PPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKM---MDPILTTSVPVYSLKVDKEYE   79 (106)
T ss_dssp             CCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEE---CCCBSSSEEEEEEEETTSCEE
T ss_pred             CCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCcccee---eeecccceEEECCCCCCCEEE
Confidence            88888875432      347999999987654433456789999998877665432   223445679999999999999


Q ss_pred             EEEEEeeCCCC--CCCCccEEEeecC
Q psy12061        467 VKVMAYNNAGE--GPESERYLERTYR  490 (626)
Q Consensus       467 v~V~a~~~~g~--s~~s~~~~~~t~~  490 (626)
                      |+|+|.+..|.  |++|+.+.+++.+
T Consensus        80 frVRa~~~~~g~ws~wS~~v~v~~P~  105 (106)
T d1axib2          80 VRVRSKQRNSGNYGEFSEVLYVTLPQ  105 (106)
T ss_dssp             EEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred             EEEEEEECCCCCCCCCCCCEEEECCC
Confidence            99999987653  8899888877653

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.1e-13  Score=102.48  Aligned_cols=79  Identities=34%  Similarity=0.485  Sum_probs=64.4

Q ss_pred             CCCCCceEEEEeeeCCCC-CCeeEEEeCCEEccCC--CcEEEcc----CC---cEEEccCCCCC-CEEEEEEEEcCCCCc
Q psy12061          1 YAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSG--GRRKIFE----NG---NLLISPVSRDD-SGIYSCTATNVHGMD   69 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~i~~~--~~~~~~~----~g---~L~i~~v~~~d-~G~Y~C~a~n~~g~~   69 (626)
                      ++.+|+++.|.|.+.|.| ++.+.|++++..+..+  .++.+..    ++   .|.|.+++.+| +|.|+|.|.|..|.+
T Consensus        17 ~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~   96 (115)
T d2crya1          17 HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD   96 (115)
T ss_dssp             CCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEE
T ss_pred             EEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeE
Confidence            478999999999999964 5589999999988643  3444432    11   59999999998 699999999999999


Q ss_pred             eeeEEEEEEe
Q psy12061         70 ESKGRLIVLH   79 (626)
Q Consensus        70 ~~~~~l~v~~   79 (626)
                      ...+.|.|..
T Consensus        97 ~~~~~L~V~~  106 (115)
T d2crya1          97 TEIIRLKEQG  106 (115)
T ss_dssp             EEEECCCCSC
T ss_pred             EEEEEEEEEC
Confidence            9888888844

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.7e-12  Score=93.96  Aligned_cols=97  Identities=8%  Similarity=0.054  Sum_probs=66.9

Q ss_pred             CCceeeeCCCceEEecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEE
Q psy12061         80 GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE  158 (626)
Q Consensus        80 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  158 (626)
                      +|.++...+....+.+|+.++|.|.+.| .|.|.++|.|+|||.++.......... ........|.|.....+|.|.|+
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~-~~~~~~s~l~~~~~~~d~g~~yt   79 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAP-APQEATATFNSTADREDGHRNFS   79 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTT-CTTCEEEEEEEECCGGGGGCEEE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEee-cccceeEEEEEeeehhcCCcEEE
Confidence            3444444455667899999999999987 566777889999999997543211111 10112235777777778888999


Q ss_pred             EEEEeCCCceEEEEEEEEe
Q psy12061        159 CVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       159 C~a~n~~g~~~~~~~l~v~  177 (626)
                      |+|.|..|.......+.+.
T Consensus        80 C~A~n~~~~~~~~~~~~~s   98 (106)
T d1zxqa1          80 CLAVLDLMSRGGNIFHKHS   98 (106)
T ss_dssp             EEEEEECGGGTCCEEEEEC
T ss_pred             EEEEecCCCCCCeeEeccc
Confidence            9999998876555555543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8e-12  Score=91.61  Aligned_cols=74  Identities=26%  Similarity=0.345  Sum_probs=56.8

Q ss_pred             CCCCCceEEEEeeeCCCCCCeeEEEeCCEEccC------------CCcEEEc-cCCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          1 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS------------GGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~------------~~~~~~~-~~g~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      |+..|++|+|.|.+. .|.+.|.|++++..+..            ..|..+. .+++|.|.+++.+|+|.|+|.|.|..+
T Consensus         6 ~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1           6 YGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             EEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             EEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCc
Confidence            567899999999874 58889999999987631            1333332 356899999999999999999988766


Q ss_pred             CceeeEEEEE
Q psy12061         68 MDESKGRLIV   77 (626)
Q Consensus        68 ~~~~~~~l~v   77 (626)
                      ..  .+.|.|
T Consensus        85 t~--~~~l~V   92 (93)
T d1ccza1          85 TM--KFFLYV   92 (93)
T ss_dssp             CE--EEEEEE
T ss_pred             EE--EEEEEE
Confidence            43  455555

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=5.3e-11  Score=89.39  Aligned_cols=85  Identities=11%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             CCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEee
Q psy12061        394 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN  473 (626)
Q Consensus       394 p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~  473 (626)
                      |..+.+...+.+++.|+|++|....    +.+.+|.|+|+....................+.+.+|.|++.|.|+|+|.+
T Consensus        11 P~~p~~~~~~~~~i~v~W~pp~~~~----~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~   86 (106)
T d1cd9b2          11 DIGPDVVSHQPGCLWLSWKPWKPSE----YMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIR   86 (106)
T ss_dssp             CC-------CCSCEEEEEECCGGGT----TSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEE
T ss_pred             CCCCeEecCCCCEEEEEEcCcccCC----ccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEe
Confidence            4455677778999999999887554    558999999987665543333333445566799999999999999999999


Q ss_pred             CCCCCCCCc
Q psy12061        474 NAGEGPESE  482 (626)
Q Consensus       474 ~~g~s~~s~  482 (626)
                      ..|.|.+|+
T Consensus        87 ~~g~g~wS~   95 (106)
T d1cd9b2          87 SSLPGFWSP   95 (106)
T ss_dssp             SSSCCCCCC
T ss_pred             CCCCCCCcC
Confidence            999976654

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=5.4e-11  Score=86.99  Aligned_cols=87  Identities=18%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++.+...+.+++.|+|++|.       +.+.+|.|.|+..+....... .........+++.+|+|++.|.|+|+|.
T Consensus         6 ~P~~l~v~~v~~~si~v~W~~p~-------~~~~~y~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~v~V~a~   77 (93)
T d1tdqa1           6 GPTQILVRDVSDTVAFVEWTPPR-------AKVDFILLKYGLVGGEGGKTT-FRLQPPLSQYSVQALRPGSRYEVSISAV   77 (93)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS-------SCCSEEEEEEEESSSSCCCEE-EEECTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCEEEEEEEccc-------cCCCceEEEEEeccCcceeeE-EEeCCCceEEEEeCcccceEEEEEEEEE
Confidence            78999999999999999999875       457799999987776544433 3345556779999999999999999999


Q ss_pred             eCCCCCCCCccEEEee
Q psy12061        473 NNAGEGPESERYLERT  488 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t  488 (626)
                      +..|.|+++. ..++|
T Consensus        78 ~~~g~s~~~~-~~~tT   92 (93)
T d1tdqa1          78 RGTNESDASS-TQFTT   92 (93)
T ss_dssp             ETTEECCCEE-EEEEC
T ss_pred             eCCCCcCCEE-EEEEC
Confidence            9999987763 45555

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6e-11  Score=86.85  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|.|+..+...   ..........++.+.+|.|++.|.|+|+|+
T Consensus         4 ~P~~l~~~~~~~~sv~l~W~~p~-------~~~~~Y~v~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (93)
T d2cuma1           4 APRDLEAKEVTPRTALLTWTEPP-------VRPAGYLLSFHTPGGQT---QEILLPGGITSHQLLGLFPSTSYNARLQAM   73 (93)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCS-------SCCSEEEEEEECTTSCE---EEEEECSSCSEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCEEEEEEEccc-------cccccEEEEEEcccccc---EEEEECCCccEEEEeCccCCCEEEEEEEEE
Confidence            78899999999999999999875       44789999997755432   223345566789999999999999999999


Q ss_pred             eCCCCCCCCccEEEeec
Q psy12061        473 NNAGEGPESERYLERTY  489 (626)
Q Consensus       473 ~~~g~s~~s~~~~~~t~  489 (626)
                      +..|.|+++. ..++|.
T Consensus        74 ~~~g~s~~~~-~~~tT~   89 (93)
T d2cuma1          74 WGQSLLPPVS-TSFTTG   89 (93)
T ss_dssp             BTTBCCCCEE-EEEECC
T ss_pred             eCCCCCCCEE-EEEEeC
Confidence            9999988764 456654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.20  E-value=1.2e-11  Score=88.07  Aligned_cols=59  Identities=24%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      |.+|++++|.|.+.|.|.+ .+.|+|||..+..+       +.+|.|.+++.+|+|.|+|.|.|..+
T Consensus        17 v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          17 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------ASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             EETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------CSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             EeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec-------ceeeEecCCcccCCEEEEEEccCCCc
Confidence            4689999999999999888 56678898877533       35699999999999999999987644

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.3e-11  Score=87.41  Aligned_cols=68  Identities=28%  Similarity=0.380  Sum_probs=52.3

Q ss_pred             CCCCceEEEEeeeCCCCCC-eeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|++++|.|.+.|.|.+ .+.|+||+..+...       +.+|.|.+++.+|+|.|+|.|.|..+.  ..+.|.|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~v~~~d~G~Y~C~a~~s~~S--~~v~l~V~   81 (82)
T d1f2qa1          13 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVF   81 (82)
T ss_dssp             EETTCCEEEECCTTCC----CCEEEETTEECSCC-------SSEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEE
T ss_pred             EeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-------cceeEECCCChhhCCcEEEEecCCCCc--ccEEEEEE
Confidence            4689999999999999888 56778899888543       356999999999999999999876543  34566663

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=4.5e-11  Score=85.87  Aligned_cols=80  Identities=18%  Similarity=0.307  Sum_probs=65.1

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|+|+..+.....   .......+++.+.+|.|++.|.|+|+|.
T Consensus         3 ~P~nl~v~~~~~~s~~l~W~~p~-------~~~~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~~~L~p~t~Y~v~V~a~   72 (86)
T d1tdqa3           3 SPRDLMVTASSETSISLIWTKAS-------GPIDHYRITFTPSSGISSE---VTVPRDRTSYTLTDLEPGAEYIISITAE   72 (86)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCC-------SCCSEEEEEEECSSSCCEE---EEEESSCSEEEECCCCTTCCEEEEEEEE
T ss_pred             cCCCCEEEEecCCEEEEEEeCCC-------CCccceEEEEecccccceE---EEeCCCccEEEECCCccccEEEEEEEEE
Confidence            78899999999999999999875       4578999998765543322   2334566779999999999999999999


Q ss_pred             eCCCCCCCCc
Q psy12061        473 NNAGEGPESE  482 (626)
Q Consensus       473 ~~~g~s~~s~  482 (626)
                      +..|.|.++.
T Consensus        73 ~~~~~s~p~~   82 (86)
T d1tdqa3          73 RGRQQSLEST   82 (86)
T ss_dssp             ETTEECCCEE
T ss_pred             cCCCEECCEE
Confidence            9999877654

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-10  Score=88.75  Aligned_cols=99  Identities=13%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCC----CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE----EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY  567 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~----~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y  567 (626)
                      +.+.||.+|++. ...+++.|+|++|.....    +..+..|.|+|+..+.... ...........+.+.+.+|.|++.|
T Consensus         4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~p~t~Y   81 (114)
T d2gysa2           4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWE-DAAILLSNTSQATLGPEHLMPSSTY   81 (114)
T ss_dssp             BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCST-TCEEEEESSSEEEECTTTCCTTCEE
T ss_pred             ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceE-EEEEeeccCceEEEEeCCCCCCcEE
Confidence            345699999986 566799999995332221    3345679998887655433 2333445566778899999999999


Q ss_pred             EEEEEEEecCCC------CCCCCCcEEEeecc
Q psy12061        568 HMRVLAFSNGGD------GRMSSPAITFQMGE  593 (626)
Q Consensus       568 ~~~V~a~~~~G~------g~~s~~~~~~~~~~  593 (626)
                      .|+|+|.+..|.      |+||.+ +.|++.+
T Consensus        82 ~~rVRa~~~~g~~~~g~wS~WS~~-v~~~t~p  112 (114)
T d2gysa2          82 VARVRTRLAPGSRLSGRPSKWSPE-VCWDSQP  112 (114)
T ss_dssp             EEEEEEEECTTSSCCBCCCCCCCC-EEEECCC
T ss_pred             EEEEEEEeCCCCCCCCCccCCcCC-EeeeCcC
Confidence            999999999986      355644 5576653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.3e-12  Score=95.01  Aligned_cols=76  Identities=12%  Similarity=-0.001  Sum_probs=55.9

Q ss_pred             CCCCceEEEEeeeCCC---CCCeeEEEeCCEEccCCCcEEEccCC-----cEEEccCCCCCCEEEEEEEEcCCCCceeeE
Q psy12061          2 AGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDESKG   73 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p~i~W~~~~~~i~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   73 (626)
                      +.+|+.++|+|.+.|.   |.++|+|+|||.+|..+....+...+     .|.|.....+|.|.|+|.|.|..|......
T Consensus        14 v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~   93 (106)
T d1zxqa1          14 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNI   93 (106)
T ss_dssp             ECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCE
T ss_pred             EeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCee
Confidence            5689999999999873   44589999999998643222221111     377887788888999999999988765555


Q ss_pred             EEEE
Q psy12061         74 RLIV   77 (626)
Q Consensus        74 ~l~v   77 (626)
                      .+.+
T Consensus        94 ~~~~   97 (106)
T d1zxqa1          94 FHKH   97 (106)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            5555

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.1e-11  Score=88.94  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=70.5

Q ss_pred             CCCceeEeecC--CcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        289 QAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       289 ~~p~~~~~~~~--~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      .+|.++.+...  ..+.|.|+|+++...+.+..+..|.|+|+..+...|......    .....+.+.+|.|++.|.|+|
T Consensus         3 ~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~rV   78 (104)
T d1n26a3           3 DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVK----DLQHHCVIHDAWSGLRHVVQL   78 (104)
T ss_dssp             CCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECG----GGCSEEEESSCCTTCCEEEEE
T ss_pred             cCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccc----cceEEEEECCCCCCCEEEEEE
Confidence            68888888654  456899999985544667788999999999887788765443    233467899999999999999


Q ss_pred             EEecCCCCCCCCcc
Q psy12061        367 QAINDVGPGPESEV  380 (626)
Q Consensus       367 ~a~n~~g~~~~s~~  380 (626)
                      +|.|..|.|.+|++
T Consensus        79 ra~n~~g~g~wSew   92 (104)
T d1n26a3          79 RAQEEFGQGEWSEW   92 (104)
T ss_dssp             EEEETTTBSCCCCC
T ss_pred             EEEeCCCccCCcCC
Confidence            99999998877764

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-11  Score=90.41  Aligned_cols=86  Identities=12%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCc------cccceeeecCccceEEecCCCCCc
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS------RANDTIIPVGNTLDADIVDLSPGK  565 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~L~p~~  565 (626)
                      +|+ +|.+|++..++.+++.|+|+  ++   ++.+.+|.|.|+..+....      .........+...++.|.+|+|++
T Consensus         3 ~Pp-~~~~l~v~~~t~~sv~v~W~--pp---~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t   76 (101)
T d2cuia1           3 SRP-RLSQLSVTDVTTSSLRLNWE--AP---PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGT   76 (101)
T ss_dssp             CCC-CCCCCEEESCCSSCEEEECC--CC---TTSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTC
T ss_pred             Ccc-CCCCcEEEEECCCEEEEEEE--ec---cccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCC
Confidence            455 67899999999999999998  33   3678899999887654311      112233445678899999999999


Q ss_pred             eEEEEEEEEecCCCCCCC
Q psy12061        566 RYHMRVLAFSNGGDGRMS  583 (626)
Q Consensus       566 ~Y~~~V~a~~~~G~g~~s  583 (626)
                      .|.|+|+|+|..|.|+++
T Consensus        77 ~Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          77 LYSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             EEEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEEeCCcEeCCe
Confidence            999999999999998865

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-11  Score=89.37  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             CCCceEEecCCcEEEEEEec-ccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         87 LPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .|..+...+|+.+.|.|.+. +.|.+  +|.|+|+|..+....   ....++...++.|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~--~i~W~k~~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKG--TITWYKDDSKTPVST---EQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSS--EEEEECSSTTSBCCC---CTTSSEEEETTEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCc--eEEEEECCccccccc---ccceEEeccCCEEEeccceecCCEEEEEEEECCC
Confidence            35567888999999999886 45554  569999986654321   1234566678899999999999999999999999


Q ss_pred             CceEEEEEEEEeCC
Q psy12061        166 GKISTKTTVIVEGP  179 (626)
Q Consensus       166 g~~~~~~~l~v~~~  179 (626)
                      |.....+.|.|...
T Consensus        83 g~~~~~~~L~V~~~   96 (101)
T d1iray1          83 YCLRIKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEEEEEECC
T ss_pred             CeEEEEEEEEEEeC
Confidence            99999999998753

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=89.04  Aligned_cols=80  Identities=30%  Similarity=0.441  Sum_probs=63.6

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+.+++.|+|++|.       +.+.+|.|+|+..+....... .........+.+.+|.|++.|.|+|+|+
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p~-------~~i~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~~~V~a~   74 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPPR-------ARITGYIIKYEKPGSPPREVV-PRPRPGVTEATITGLEPGTEYTIYVIAL   74 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECCS-------SCCSEEEEEEECTTSCCEECT-TCCCTTCCEEEEESCCTTCEEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEeCCC-------cCCceEEEEEeeccCCccEEE-EEcCCCccEEEEEeeeCCCEEEEEEEEE
Confidence            78899999999999999999875       448899999987665432221 1234455679999999999999999999


Q ss_pred             eCCCCCCC
Q psy12061        473 NNAGEGPE  480 (626)
Q Consensus       473 ~~~g~s~~  480 (626)
                      |..|.|++
T Consensus        75 n~~g~S~p   82 (89)
T d1fnha3          75 KNNQKSEP   82 (89)
T ss_dssp             SSSCEEEE
T ss_pred             cCCCEeCC
Confidence            99887643

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1e-10  Score=89.47  Aligned_cols=98  Identities=15%  Similarity=0.113  Sum_probs=72.9

Q ss_pred             CCCCceEEEeeecceEEEEeeeccccccc--cceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061        392 VAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV  469 (626)
Q Consensus       392 ~~p~~~~~~~~~~~si~l~W~~~~~~~~~--~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V  469 (626)
                      .+|.+|.+. .+.+++.|+|++|......  ....+..|.|+|+..+.................+.+.+|.|++.|.|+|
T Consensus         7 ~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV   85 (114)
T d2gysa2           7 PEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARV   85 (114)
T ss_dssp             CCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEEEEE
T ss_pred             CcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEEEEE
Confidence            499999985 6778999999998654321  2345678999998877665554444455556678899999999999999


Q ss_pred             EEeeCCCC------CCCCccEEEeecC
Q psy12061        470 MAYNNAGE------GPESERYLERTYR  490 (626)
Q Consensus       470 ~a~~~~g~------s~~s~~~~~~t~~  490 (626)
                      +|.+..|.      |++|..+.+.|.+
T Consensus        86 Ra~~~~g~~~~g~wS~WS~~v~~~t~p  112 (114)
T d2gysa2          86 RTRLAPGSRLSGRPSKWSPEVCWDSQP  112 (114)
T ss_dssp             EEEECTTSSCCBCCCCCCCCEEEECCC
T ss_pred             EEEeCCCCCCCCCccCCcCCEeeeCcC
Confidence            99998876      4678888888764

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.9e-11  Score=93.95  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=76.6

Q ss_pred             CCCceeEee--cCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEE
Q psy12061        289 QAPSRIGGG--GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV  366 (626)
Q Consensus       289 ~~p~~~~~~--~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v  366 (626)
                      .+|.++.+.  ..+.++|.|+|++  +.+.++.+..|.|+|+......|....... .......+.+.+|.+++.|.|+|
T Consensus         6 ~pP~~~~v~~~~~~~~si~v~W~~--p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~t~Y~~~V   82 (115)
T d1bqua2           6 NPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDASTWSQIPPED-TASTRSSFTVQDLKPFTEYVFRI   82 (115)
T ss_dssp             CCCEEEEEECC--CCSCEEEEEEC--CGGGGTSCEEEEEEEEETTCSSCEECCGGG-GCSCCSEEEECSCCSSEEEEEEE
T ss_pred             CCCCCCEEEEeccCCCEEEEEEee--ccccccceeeeeeeeeeeeeeeeecccccc-ccccccEEeeCCCccCcEEEEEE
Confidence            577777765  4557889999998  556678899999999988876665443322 22234578899999999999999


Q ss_pred             EEecCCCCCCC---CccEEEEccCCCCCCCC
Q psy12061        367 QAINDVGPGPE---SEVVTIFSAEDMPQVAP  394 (626)
Q Consensus       367 ~a~n~~g~~~~---s~~~~~~t~~~~p~~~p  394 (626)
                      +|.|..|.|.+   |....++|.+.+|..+|
T Consensus        83 ~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~P  113 (115)
T d1bqua2          83 RCMKEDGKGYWSDWSEEASGITYEDRPSKEP  113 (115)
T ss_dssp             EEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred             EEEeCCCccCCcCCcCCEEEECCCCCCCCCc
Confidence            99999998755   56678888777665433

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.3e-13  Score=102.06  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=73.6

Q ss_pred             EEEEeCCceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEec---CCeEEEeecCC
Q psy12061         75 LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID---GGLLEITNASF  151 (626)
Q Consensus        75 l~v~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~  151 (626)
                      |.|..||. +.. ++...+.+|+++.|.|.+.+.|++. .+.|++++..+................   ...|.|.+++.
T Consensus         2 L~V~~Pp~-i~~-~~~~~~~~G~~~~l~C~v~~~~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNGPPI-ISS-TQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCSSCC-EEE-ECCCCCCTTSCCCCCEEECCSSCCS-EEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEecCCE-Eec-CCCEEEecCCEEEEEEEeecCCCee-EEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            44544554 443 4567788999999999999966543 568999999987542111100000011   13699999999


Q ss_pred             CC-CEeEEEEEEeCCCceEEEEEEEEeCCC
Q psy12061        152 AD-AGEYECVVKSTVGKISTKTTVIVEGPP  180 (626)
Q Consensus       152 ~d-~g~Y~C~a~n~~g~~~~~~~l~v~~~P  180 (626)
                      .| +|.|+|.|.|..|..+..+.|.|...+
T Consensus        79 ~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             hcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            99 799999999999999999999987644

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4e-11  Score=91.47  Aligned_cols=91  Identities=25%  Similarity=0.316  Sum_probs=69.1

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      +|. +|.++++.. ..+++.|+|++|...+    |.|.+|.|+|+..+...   ...........+++.+|.+++.|.|+
T Consensus        20 vP~-~P~~~~~~~-~~~si~v~W~~p~~~~----g~i~~Y~i~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~   90 (113)
T d1x5ia1          20 VPE-VPSSLHVRP-LVTSIVVSWTPPENQN----IVVRGYAIGYGIGSPHA---QTIKVDYKQRYYTIENLDPSSHYVIT   90 (113)
T ss_dssp             CCC-SCSEEEEEE-ETTEEEEEEECCSCTT----BCCCEEEEEECSSCGGG---EEEECCTTCCEEEECSCCSSCEECCE
T ss_pred             CCC-CCEeeeeee-CCCEEEEEEEccccCC----ccEEEEEEEeeeccccc---eeeeeeCCccEEEEeccccCcEEEEE
Confidence            554 899999875 5689999999886543    77999999986544322   22344556678999999999999999


Q ss_pred             EEEeeCCCCCCCCccEEEeec
Q psy12061        469 VMAYNNAGEGPESERYLERTY  489 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~~~t~  489 (626)
                      |+|.|..|.|+++. ..++|.
T Consensus        91 V~A~n~~G~g~~~~-~~~~T~  110 (113)
T d1x5ia1          91 LKAFNNVGEGIPLY-ESAVTR  110 (113)
T ss_dssp             EEEECSSCBCCCCC-CCEECC
T ss_pred             EEEECCCcCCCCee-eEEEeC
Confidence            99999999997643 334443

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.4e-12  Score=100.01  Aligned_cols=105  Identities=17%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             CCCCCCCCCceEEEeeecceEEEEeeecccccc-----ccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCcc
Q psy12061        387 EDMPQVAPQGVFSRGFNSTAINVTWNPIELIRE-----NIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       387 ~~~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~-----~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  461 (626)
                      +.+|. .+....+..++.+++.|+|++|.....     .....+.+|.+.++.........  .........+.|.+|+|
T Consensus        15 ~~~~~-~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~--~~~~~~~~~~~i~~L~P   91 (137)
T d1wk0a_          15 EALLS-NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYK--SVYVGEETNITLNDLKP   91 (137)
T ss_dssp             HHHTT-CCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCE--EEEEESCSEEEECSCCT
T ss_pred             ccCCC-CCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEE--EEEecCccEEEECCCCC
Confidence            33444 444567888899999999998764321     11124667898876554433222  22334556799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEeecCCCCC
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ  494 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t~~~~p~  494 (626)
                      ++.|.|+|+|+|..|.|++|..+.++|....|.
T Consensus        92 ~t~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P~  124 (137)
T d1wk0a_          92 AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD  124 (137)
T ss_dssp             TCEECEEEEEEETTEECCCCCCCCEECCCSSSC
T ss_pred             CcEEEEEEEEEcCCcccCCCCCEEEECCCCCCC
Confidence            999999999999999999999999999887764

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.1e-11  Score=88.04  Aligned_cols=82  Identities=20%  Similarity=0.383  Sum_probs=65.6

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++..++.+++.|+|++|.       +.+.+|.+.|+........ ..........++.+.+|.|++.|.|+|.|.
T Consensus         4 ~P~~l~v~~vt~~sv~l~W~~p~-------~~~~~y~i~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (94)
T d1j8ka_           4 RPKGLAFTDVDVDSIKIAWESPQ-------GQVSRYRVTYSSPEDGIHE-LFPAPDGEEDTAELQGLRPGSEYTVSVVAL   75 (94)
T ss_dssp             CCCCCEEEEEETTEEEEECCCCS-------SCCSCEEEEEEETTTEEEE-ECCCCCSSCCEEEECSCCCCSEEEEEEEEC
T ss_pred             CCCCCEEEEecCCEEEEEEeCCC-------ccccceEEEEEeecCCCce-EEEecCCCccEEEECCCCCCCEEEEEEEEE
Confidence            78899999999999999999875       3477999999776654332 222334556779999999999999999999


Q ss_pred             eCCCCCCCCc
Q psy12061        473 NNAGEGPESE  482 (626)
Q Consensus       473 ~~~g~s~~s~  482 (626)
                      |..|.|.+..
T Consensus        76 ~~~g~S~p~~   85 (94)
T d1j8ka_          76 HDDMESQPLI   85 (94)
T ss_dssp             SSSCCCCCEE
T ss_pred             eCCCCcCCEE
Confidence            9999876653

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.4e-11  Score=86.03  Aligned_cols=79  Identities=29%  Similarity=0.434  Sum_probs=58.9

Q ss_pred             CceeeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEE
Q psy12061         81 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV  160 (626)
Q Consensus        81 p~~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  160 (626)
                      |.+... |....+.+|++++|.|.+.+.|.+. .+.|++++..+..             .+..|.|.+++.+|+|.|+|.
T Consensus         2 P~It~~-P~~~~v~~G~~v~L~C~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           2 PKVSLN-PPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEE-------------TNSSLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             CCCEEE-SSCSEEETTCCEEEECCTTCC-----CCEEEETTEECSC-------------CSSEEEECSCCGGGCEEEEEE
T ss_pred             CEEEEc-CCCeEEeCCCeEEEEEEEeeeeeec-ceeeeeeeeeeec-------------ccceeEECCCChhhCCcEEEE
Confidence            445444 5667789999999999999999875 4578999988754             345799999999999999999


Q ss_pred             EEeCCCceEEEEEEEE
Q psy12061        161 VKSTVGKISTKTTVIV  176 (626)
Q Consensus       161 a~n~~g~~~~~~~l~v  176 (626)
                      |.|..+  +..+.|.|
T Consensus        67 a~~s~~--S~~v~l~V   80 (82)
T d1f2qa1          67 HQQVNE--SEPVYLEV   80 (82)
T ss_dssp             CTTSSC--CCCEEEEE
T ss_pred             ecCCCC--cccEEEEE
Confidence            987654  34455555

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.2e-12  Score=97.93  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=68.4

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccc---------------------cceeeecCccc
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRA---------------------NDTIIPVGNTL  554 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~---------------------~~~~~~~~~~~  554 (626)
                      .|.+|++...+.++|.|+|++|. ...++.|.+|.|+|+.........                     ..........+
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~-~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYW-PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCC-SSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCEEEEEEEecCCEEEEEEeCCC-ccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            57799999999999999999532 234588999999886654321000                     01112335678


Q ss_pred             eEEecCCCCCceEEEEEEEEecCCC-----CCCCCCcEEEee
Q psy12061        555 DADIVDLSPGKRYHMRVLAFSNGGD-----GRMSSPAITFQM  591 (626)
Q Consensus       555 ~~~l~~L~p~~~Y~~~V~a~~~~G~-----g~~s~~~~~~~~  591 (626)
                      ++.|.||+|++.|.|+|+|+|..|+     |+.|+. +.++|
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~-v~~~T  123 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI-IYVQT  123 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCC-BCCBC
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCccc-EEEEc
Confidence            8999999999999999999999995     677754 34554

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.9e-10  Score=84.04  Aligned_cols=88  Identities=18%  Similarity=0.150  Sum_probs=63.5

Q ss_pred             CCCCCceEEEeeeC-CCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEEE
Q psy12061        493 PQKPPSAVHIKGIN-PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV  571 (626)
Q Consensus       493 p~~~p~~l~~~~~~-~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V  571 (626)
                      .+.||.+|.+.... .+.+.|.|.+ +.....+.+..|.|+|+..+....  ........+.+++.|.+|.|++.|.|+|
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~-P~~~~~~~~~~Y~v~y~~~~~~~~--~~~~~~~~~~t~~~i~~L~p~t~Y~~rV   80 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGNGAGS--VQRVEILEGRTECVLSNLRGRTRYTFAV   80 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEEC-SSSCSCGGGEEEEEEEEEC-CCCE--EEEEEECTTCCEEEECSCCSSCEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeee-ccccccceEEEEEEEEecCCCCCc--eEEEeecCCccEEEEeCCCCCcEEEEEE
Confidence            45689999988764 4569999996 344556777899999987755422  2344445567889999999999999999


Q ss_pred             EEEecC--CCCCCC
Q psy12061        572 LAFSNG--GDGRMS  583 (626)
Q Consensus       572 ~a~~~~--G~g~~s  583 (626)
                      +|.+..  |.|.||
T Consensus        81 Rar~~~~~~~G~WS   94 (105)
T d1erna2          81 RARMAEPSFGGFWS   94 (105)
T ss_dssp             EEEECSSSCCBCCC
T ss_pred             EEEECCCCCCCCCC
Confidence            999754  344444

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=4.4e-11  Score=89.24  Aligned_cols=76  Identities=25%  Similarity=0.398  Sum_probs=59.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEcc-------------------CCCcEEEccCCcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~-------------------~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|.|.........+.|+|+.....                   -.+|..+..+|+|.|.+|+.+|+|.|.|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            6799999999985444456999999554210                   136889999999999999999999999999


Q ss_pred             EcCCCC-ceeeEEEEE
Q psy12061         63 TNVHGM-DESKGRLIV   77 (626)
Q Consensus        63 ~n~~g~-~~~~~~l~v   77 (626)
                      .+..+. ....+.|.|
T Consensus        91 ~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          91 TDENYRRTQATVRFHV  106 (107)
T ss_dssp             EETTEEECCCCEEECC
T ss_pred             EECCCCEEEEEEEEEE
Confidence            987644 555667765

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.3e-11  Score=88.45  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             CCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEE-ecCccceEEEeCCccCceEEEE
Q psy12061        390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL-SRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      |. +|.++.+...+.+++.|+|.+|...+.. ......|.|+|+..+.......... .......+.+.+|+|++.|.|+
T Consensus         2 P~-~P~~l~v~~~~~~s~~v~W~~P~~~~~~-~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   79 (101)
T d1iarb2           2 PR-APGNLTVHTNVSDTLLLTWSNPYPPDNY-LYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR   79 (101)
T ss_dssp             CC-CCEEEEEC----CCEEEEEECSSCTTST-TGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEE
T ss_pred             cc-cCCcCEEEEEeCCeEEEEEccccCCCCc-cceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEE
Confidence            44 8999999999999999999988654322 2334569999988877655433322 2334456889999999999999


Q ss_pred             EEEeeCCCCCCCCcc
Q psy12061        469 VMAYNNAGEGPESER  483 (626)
Q Consensus       469 V~a~~~~g~s~~s~~  483 (626)
                      |+|.+..|.|++|+.
T Consensus        80 VrA~~~~g~g~wSew   94 (101)
T d1iarb2          80 VRAWAQAYNTTWSEW   94 (101)
T ss_dssp             EEEECGGGTCCCCCC
T ss_pred             EEEEcCCCCCCCcCC
Confidence            999999998776653

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.13  E-value=3.5e-11  Score=90.57  Aligned_cols=86  Identities=16%  Similarity=0.070  Sum_probs=64.1

Q ss_pred             ceEEecCCcEEEEEEe-cccCCcceeEEEeeCCEEeccccCCccCCCeeE-ecCCeEEEeecCCCCCE---eEEEEEEeC
Q psy12061         90 KITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNIN-IDGGLLEITNASFADAG---EYECVVKST  164 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g---~Y~C~a~n~  164 (626)
                      +.++.+|++++|.|.+ .|.|.|.+  .|+|++..+...........++. ..++.|.|.+++..|+|   .|+|.|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v--~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLI--TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEE--EEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEE--EEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeC
Confidence            4467899999999986 89998754  89999877754432222223333 35789999999998877   799999999


Q ss_pred             CCceEEEEEEEEe
Q psy12061        165 VGKISTKTTVIVE  177 (626)
Q Consensus       165 ~g~~~~~~~l~v~  177 (626)
                      .|..+....+.+.
T Consensus        89 ~g~~~~~~~~~~i  101 (111)
T d1biha2          89 AVDEEVVLVEYEI  101 (111)
T ss_dssp             TCSSCEEEEEEEE
T ss_pred             CCCceEEEEEEEe
Confidence            9988776655443

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1e-10  Score=87.25  Aligned_cols=91  Identities=11%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             CCCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCc-------cceEEEEecCccceEEEeCCcc
Q psy12061        389 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE-------ETAVYYLSRTTRNWALIVGLQP  461 (626)
Q Consensus       389 ~p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~L~p  461 (626)
                      +|+ +|.++++...+.+++.|+|+++.       +.+.+|.|+|+......       .............++.+.+|+|
T Consensus         3 ~Pp-~~~~l~v~~~t~~sv~v~W~pp~-------~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p   74 (101)
T d2cuia1           3 SRP-RLSQLSVTDVTTSSLRLNWEAPP-------GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS   74 (101)
T ss_dssp             CCC-CCCCCEEESCCSSCEEEECCCCT-------TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCT
T ss_pred             Ccc-CCCCcEEEEECCCEEEEEEEecc-------ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCc
Confidence            465 78899999999999999999875       34778999997765432       1112233345667799999999


Q ss_pred             CceEEEEEEEeeCCCCCCCCccEEEee
Q psy12061        462 DTKYYVKVMAYNNAGEGPESERYLERT  488 (626)
Q Consensus       462 ~t~Y~v~V~a~~~~g~s~~s~~~~~~t  488 (626)
                      ++.|.|+|+|+|..|.|+.+. ..++|
T Consensus        75 ~t~Y~~~V~a~~~~g~g~~~~-~~~~T  100 (101)
T d2cuia1          75 GTLYSLTLYGLRGPHKADSIQ-GTART  100 (101)
T ss_dssp             TCEEEEEEEEECSSSEEEEEE-EEEEC
T ss_pred             CCEEEEEEEEEeCCcEeCCeE-EEeEE
Confidence            999999999999999877543 34443

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.4e-10  Score=82.05  Aligned_cols=77  Identities=18%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             CCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061        390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV  469 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V  469 (626)
                      |. +|.+|++...+.+++.|+|++|..      +.+..|.|+|+..+......   ........+++.+|.|++.|.|+|
T Consensus         3 P~-~P~nl~v~~~~~~~v~l~W~~p~~------~~~~~y~v~y~~~~~~~~~~---~~~~~~~~~~~~~L~p~t~Y~frV   72 (95)
T d2b5ic1           3 PW-APENLTLHKLSESQLELNWNNRFL------NHCLEHLVQYRTDWDHSWTE---QSVDYRHKFSLPSVDGQKRYTFRV   72 (95)
T ss_dssp             CC-CCEEEEEEEEETTEEEEEEECSSC------STTCEEEEEEEETTCSSCEE---EEECSSCEEEECSCCTTSCEEEEE
T ss_pred             Cc-CCCCCEEEEEeCCEEEEEECCCCC------ceeEEEEEEEEcCCCceeeE---eeecccceeEcCCCCCCCEEEEEE
Confidence            44 899999999999999999998764      23678999998877655433   223445679999999999999999


Q ss_pred             EEeeCCC
Q psy12061        470 MAYNNAG  476 (626)
Q Consensus       470 ~a~~~~g  476 (626)
                      +|.+..+
T Consensus        73 Ra~~~~~   79 (95)
T d2b5ic1          73 RSRFNPL   79 (95)
T ss_dssp             EEECCSS
T ss_pred             EEeeCCC
Confidence            9987654

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-11  Score=96.60  Aligned_cols=94  Identities=18%  Similarity=0.118  Sum_probs=71.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccc----------------------eEEEEecCc
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET----------------------AVYYLSRTT  450 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~----------------------~~~~~~~~~  450 (626)
                      .|.++++...+.++|.|+|++|...+   ++.|.+|.|+|+........                      .........
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~~~~---~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYWPPD---FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN   80 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCSSS---CCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSS
T ss_pred             CCEEEEEEEecCCEEEEEEeCCCccC---CCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCc
Confidence            67899999999999999999886443   36799999998665432110                      011112234


Q ss_pred             cceEEEeCCccCceEEEEEEEeeCCCC-----CCCCccEEEeec
Q psy12061        451 RNWALIVGLQPDTKYYVKVMAYNNAGE-----GPESERYLERTY  489 (626)
Q Consensus       451 ~~~~~i~~L~p~t~Y~v~V~a~~~~g~-----s~~s~~~~~~t~  489 (626)
                      ...+.|.+|+|++.|.|+|+|+|..|.     |+.|+.+.++|.
T Consensus        81 ~~~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          81 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             cCEEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            567899999999999999999999995     678888888775

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.9e-10  Score=86.75  Aligned_cols=96  Identities=14%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             CCCCCCCceEEE-eeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc-----eeeecCccceEEecCCCCC
Q psy12061        491 KAPQKPPSAVHI-KGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND-----TIIPVGNTLDADIVDLSPG  564 (626)
Q Consensus       491 ~~p~~~p~~l~~-~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~L~p~  564 (626)
                      +.||.+|.++++ .....++++++|+  ++.+++..+ .|.+.|+...........     ........+.+.+.+|.++
T Consensus         2 G~PP~~P~~v~~i~~~~~~sv~~sW~--p~~d~~~~~-~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   78 (107)
T d1cd9b1           2 GYPPASPSNLSCLMHLTTNSLVCQWE--PGPETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY   78 (107)
T ss_dssp             CCCCCCCEEEEEEEETTTTEEEEEEE--CCSCCSSCC-EEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred             CCccCCCcCCEEEEecCCCEEEEEEc--CCCCCCCCc-ceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcC
Confidence            457889999985 4567889999999  566666664 677766655433211111     1122346678999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCCCcEEEee
Q psy12061        565 KRYHMRVLAFSNGGDGRMSSPAITFQM  591 (626)
Q Consensus       565 ~~Y~~~V~a~~~~G~g~~s~~~~~~~~  591 (626)
                      +.|.|+|.|.|..|.|. |++ +.|..
T Consensus        79 t~Y~frV~A~N~~G~s~-S~~-~~~~~  103 (107)
T d1cd9b1          79 QYMAIWVQAENMLGSSE-SPK-LCLDP  103 (107)
T ss_dssp             SCEEEEEEEEETTEEEE-CCC-EEECG
T ss_pred             ceEEEEEEEEeCCcccc-CCC-EEccc
Confidence            99999999999999986 434 34543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.10  E-value=1.5e-11  Score=88.74  Aligned_cols=82  Identities=12%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEe--cCCeEEEeecCCCCCEeEEEEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      +..+++++.+.+|+++.|.|.+ +.|.|  .+.|+|||.++..+..     ..+..  ....|.|.+++.+|+|.|+|.|
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~--~v~W~k~g~~i~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   75 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDV--HGQWKLKGQPLTASPD-----CEIIEDGKKHILILHNCQLGMTGEVSFQA   75 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSC--CCBCCSSSCCCCSSSS-----CEEEECSSCEEEECCSCCSCCCSEECCBC
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCc--EEEEEEeeeeccccee-----EEEEeeceeEEEEEcCCChhcCEEEEEEE
Confidence            4457889999999999999998 46666  4589999999976531     22222  3457999999999999999998


Q ss_pred             EeCCCceEEEEEEEEe
Q psy12061        162 KSTVGKISTKTTVIVE  177 (626)
Q Consensus       162 ~n~~g~~~~~~~l~v~  177 (626)
                      .|..+    ++.|.|.
T Consensus        76 ~n~~~----sa~l~V~   87 (89)
T d1tiua_          76 ANAKS----AANLKVK   87 (89)
T ss_dssp             SSCBC----CEEEEEE
T ss_pred             CceEE----EEEEEEE
Confidence            76543    4566665

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=7.3e-10  Score=83.79  Aligned_cols=87  Identities=26%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             CCCCCceEEEeee--CCCEEEEEEeecCCC-CCCCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEE
Q psy12061        493 PQKPPSAVHIKGI--NPTTVHVTWRYVSPS-FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM  569 (626)
Q Consensus       493 p~~~p~~l~~~~~--~~~~~~l~W~~~~~~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~  569 (626)
                      .+.||.++++..+  +.+++.|+|++|... ...+.+..|.++++..+...    .......+.+.+.|.+|.+++.|.|
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~~i~~L~~~t~Y~~   82 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQ----WQHVELSNGTAHTITDAYAGKEYII   82 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCC----CCCEEESSCSEEEETTCCSSSCEEE
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCc----eEEeccCCceeEEeCCCCCCCEEEE
Confidence            3468999998765  567899999953322 23445667999887655442    2233455778899999999999999


Q ss_pred             EEEEEecCCCCCCCC
Q psy12061        570 RVLAFSNGGDGRMSS  584 (626)
Q Consensus       570 ~V~a~~~~G~g~~s~  584 (626)
                      +|+|.+. |.|.+|+
T Consensus        83 rVrA~~~-~~g~wS~   96 (109)
T d1uc6a_          83 QVAAKDN-EIGTWSD   96 (109)
T ss_dssp             EEECCBS-SSCCCCC
T ss_pred             EEEEEEC-CCCCcCC
Confidence            9999885 4454444

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.2e-10  Score=83.98  Aligned_cols=85  Identities=15%  Similarity=0.168  Sum_probs=66.3

Q ss_pred             CCCCCCCceEEEEEeccceEEEEecCCCCCCcccEEEEEEeecCCCCceEeecceeeeeeeccCCceeEEEEeeccCCce
Q psy12061        178 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST  257 (626)
Q Consensus       178 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  257 (626)
                      .||.+|.+++|...+..++.|+|+++.+++.+ ..|.|.++..+...|......         .......+..+|.+++.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~~~~~~-~~y~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~L~~~~~   71 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE-TNFTLKSEWATHKFADCKAKR---------DTPTSCTVDYSTVYFVN   71 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCSSC-CEEEEEEEETTEECCCEECCS---------SCTTEEECSSCCCTTSC
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcccCCCc-eEEEEEEEEcccceeEeeccc---------ccceeeeeeeecCCCcE
Confidence            48999999999999999999999998776655 689999988766555433221         22223444456999999


Q ss_pred             EEEEEEEecCCccCC
Q psy12061        258 YEFKVIAGNELGYGE  272 (626)
Q Consensus       258 y~~~v~a~n~~g~~~  272 (626)
                      |.|+|.|.|..|.+.
T Consensus        72 Y~f~V~A~N~~G~s~   86 (95)
T d1bqua1          72 IEVWVEAENALGKVT   86 (95)
T ss_dssp             EEEEEEEEETTEEEE
T ss_pred             EEEEEEEEeCCcccc
Confidence            999999999999875

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.2e-10  Score=84.18  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             CCCCCCceEEEeeeCCCEEEEEEeecCCCCC-CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        492 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       492 ~p~~~p~~l~~~~~~~~~~~l~W~~~~~~~~-~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      ++.+|| +|.+.. +.+++.|+|.+  |... ...+..|+|+|+.......  ..........+.+.+.+|+|++.|.|+
T Consensus         4 Vk~~Pp-~l~v~~-~~~s~~l~W~~--P~~~~~~~~~~Y~v~y~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~Y~~r   77 (100)
T d2gysa4           4 IQMAPP-SLQVTK-DGDSYSLRWET--MKMRYEHIDHTFEIQYRKDTATWK--DSKTETLQNAHSMALPALEPSTRYWAR   77 (100)
T ss_dssp             BCCCCC-EEEEC----CCCEEEEEC----------CEEEEEEEECSSSCST--TSCEEEEESCSEEECCCCCSSCCCEEE
T ss_pred             ccCCCC-ccEEEE-CCCEEEEEEec--CcccCCccceEEEEEEeeccccee--ceeecccCCceEEEeCCCCCCCeEEEE
Confidence            345566 788775 55789999994  4433 3356689999976554422  222333446789999999999999999


Q ss_pred             EEEEecCCC--CCCCCC
Q psy12061        571 VLAFSNGGD--GRMSSP  585 (626)
Q Consensus       571 V~a~~~~G~--g~~s~~  585 (626)
                      |+|.+..|.  |.+|+.
T Consensus        78 VRa~~~~g~~~g~WSeW   94 (100)
T d2gysa4          78 VRVRTSRTGYNGIWSEW   94 (100)
T ss_dssp             EEEEECCTTCCBCCCCC
T ss_pred             EEEEECCCCCCCCccCC
Confidence            999988874  666654

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.3e-09  Score=78.20  Aligned_cols=93  Identities=18%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             CCCCceEEEeee-cceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEE
Q psy12061        392 VAPQGVFSRGFN-STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVM  470 (626)
Q Consensus       392 ~~p~~~~~~~~~-~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~  470 (626)
                      .||.++.+.... .+.+.|+|.+|....   .+.+..|.|+|+..+...... ........+++.|.+|+|++.|.|+|+
T Consensus         6 dPP~nl~v~~~~~~~~l~v~W~~P~~~~---~~~~~~Y~v~y~~~~~~~~~~-~~~~~~~~t~~~i~~L~p~t~Y~~rVR   81 (105)
T d1erna2           6 DAPVGLVARLADESGHVVLRWLPPPETP---MTSHIRYEVDVSAGNGAGSVQ-RVEILEGRTECVLSNLRGRTRYTFAVR   81 (105)
T ss_dssp             CCCEEEEEEECCC-CCEEEEEECSSSCS---CGGGEEEEEEEEEC-CCCEEE-EEEECTTCCEEEECSCCSSCEEEEEEE
T ss_pred             CCCCCCEEEEecCCCcEEEEeeeccccc---cceEEEEEEEEecCCCCCceE-EEeecCCccEEEEeCCCCCcEEEEEEE
Confidence            389999988654 457999999875432   255789999998876654332 333344556799999999999999999


Q ss_pred             EeeCC--CC---CCCCccEEEee
Q psy12061        471 AYNNA--GE---GPESERYLERT  488 (626)
Q Consensus       471 a~~~~--g~---s~~s~~~~~~t  488 (626)
                      |.+..  +.   |.+|..+.+.|
T Consensus        82 ar~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          82 ARMAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             EEECSSSCCBCCCCCCCCEEEEC
T ss_pred             EEECCCCCCCCCCCCCCCEEeeC
Confidence            98653  23   46677777665

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=1.1e-09  Score=85.47  Aligned_cols=82  Identities=20%  Similarity=0.222  Sum_probs=59.0

Q ss_pred             CCCCceEEEEeeeCCC---CCCeeEEEeCCEEc-----------c------CCCcEEEccC------CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA---PKPKFVWKKDGNII-----------G------SGGRRKIFEN------GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p~i~W~~~~~~i-----------~------~~~~~~~~~~------g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|.+.+.   ....|.|+|.+...           .      -..|..+..+      .+|.|.+|+.+|+
T Consensus        14 ~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   93 (126)
T d1pkoa_          14 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDE   93 (126)
T ss_dssp             EETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHC
Confidence            5689999999998543   23479999864310           0      1234444322      2699999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEEeCCce
Q psy12061         56 GIYSCTATNVHGMDESKGRLIVLHGPSY   83 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~   83 (626)
                      |.|.|.+.+..+.......|.|..|+.+
T Consensus        94 G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          94 GGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             eEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            9999999999888888889999765443

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=3.9e-09  Score=79.24  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             CCCCCCceeEe-ecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcc----eeeeeeeecceeeEEEEeCCCccee
Q psy12061        286 KPYQAPSRIGG-GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF----QSETLKEYGNVGIAVVRIPSEFYYT  360 (626)
Q Consensus       286 ~p~~~p~~~~~-~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~p~~  360 (626)
                      .|+.+|.++.. ...+.++|+|+|++  +.+.+.+ ..|.+.|.......+    ...............+++.+|.+++
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p--~~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t   79 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEP--GPETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQ   79 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEEC--CSCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTS
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcC--CCCCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCc
Confidence            46689999984 56778899999997  4455555 567777766552222    2222222233456788899999999


Q ss_pred             EEEEEEEEecCCCCCCCCccEEE
Q psy12061        361 EYEVKVQAINDVGPGPESEVVTI  383 (626)
Q Consensus       361 ~Y~~~v~a~n~~g~~~~s~~~~~  383 (626)
                      .|.|||.|.|..|.+. |..+.+
T Consensus        80 ~Y~frV~A~N~~G~s~-S~~~~~  101 (107)
T d1cd9b1          80 YMAIWVQAENMLGSSE-SPKLCL  101 (107)
T ss_dssp             CEEEEEEEEETTEEEE-CCCEEE
T ss_pred             eEEEEEEEEeCCcccc-CCCEEc
Confidence            9999999999999875 555544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=2.7e-09  Score=77.98  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=61.9

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccc----cCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM----DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV  165 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .+....|++++|.|...........|.|++++..+...    .............+++|+|.+++.+|+|.|+|.+.+..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            34567899999999644333333468999998877421    11111122233367899999999999999999999999


Q ss_pred             Cce--EEEEEEEEe
Q psy12061        166 GKI--STKTTVIVE  177 (626)
Q Consensus       166 g~~--~~~~~l~v~  177 (626)
                      |..  +..+.|.|.
T Consensus        84 g~~~~~~~~~L~V~   97 (98)
T d1hnga1          84 GTRILNKALDLRIL   97 (98)
T ss_dssp             CCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEE
Confidence            976  556667664

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1e-08  Score=79.77  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             CCCceEEecCCcEEEEEEecccC-CcceeEEEeeCCEEec-----cc-----cCCccCCCeeEe-------cCCeEEEee
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIG-----NM-----DLNELETPNINI-------DGGLLEITN  148 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~~~-----~~-----~~~~~~~~~~~~-------~~~~l~i~~  148 (626)
                      |...+.+..|++++|.|.+.... ...+.|.|++.+....     ..     ........+...       .+.+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            44568899999999999986433 2345678998643210     00     011111122222       134899999


Q ss_pred             cCCCCCEeEEEEEEeCCCceEEEEEEEEeCCCC
Q psy12061        149 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPG  181 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~P~  181 (626)
                      ++.+|+|.|+|.+.+..+..+..+.|.|..|+.
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            999999999999999999889999999988653

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-09  Score=78.96  Aligned_cols=85  Identities=16%  Similarity=0.181  Sum_probs=59.1

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCcc-ccceeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR-ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      +|.+|++...+... .|+|+  +|...++.+..|.+.  ..+..... .............+.+.+|.++..|.|||+|.
T Consensus         3 ~P~nv~v~s~n~~~-~L~W~--pP~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~   77 (98)
T d1fyhb1           3 TPTNVTIESYNMNP-IVYWE--YQIMPQVPVFTVEVK--NYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR   77 (98)
T ss_dssp             CCEEEEEECBSSCC-EEEEE--CCCCSSCCEEEEEEE--ETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred             cCCceEEEEeCCcE-EEEEC--CCCCCCCCceeEEEE--EeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEE
Confidence            68899998877554 69999  566666766445443  33222111 11222334456667789999999999999999


Q ss_pred             ecCCCCCCCCC
Q psy12061        575 SNGGDGRMSSP  585 (626)
Q Consensus       575 ~~~G~g~~s~~  585 (626)
                      |..|.|++++.
T Consensus        78 n~~g~S~ws~s   88 (98)
T d1fyhb1          78 VGQKESAYAKS   88 (98)
T ss_dssp             ETTEECCCEEC
T ss_pred             cCCcccCCccC
Confidence            99999998854

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8e-09  Score=77.86  Aligned_cols=93  Identities=13%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             CCCCceeEeec--CCcCeEEEEEeeCCCC-CcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEE
Q psy12061        288 YQAPSRIGGGG--GKIGDLSISWEPLPRE-KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV  364 (626)
Q Consensus       288 ~~~p~~~~~~~--~~~~~v~l~W~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~  364 (626)
                      +.||.++.+..  .+.++|.|+|+++... ........|.++++..+...|......     ....+++.+|.+++.|.|
T Consensus         8 P~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----~~~~~~i~~L~~~t~Y~~   82 (109)
T d1uc6a_           8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELS-----NGTAHTITDAYAGKEYII   82 (109)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEES-----SCSEEEETTCCSSSCEEE
T ss_pred             CCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccC-----CceeEEeCCCCCCCEEEE
Confidence            36888888754  3568899999984322 233456789999998887777654332     234678999999999999


Q ss_pred             EEEEecCCC--CCCCCccEEEEc
Q psy12061        365 KVQAINDVG--PGPESEVVTIFS  385 (626)
Q Consensus       365 ~v~a~n~~g--~~~~s~~~~~~t  385 (626)
                      ||+|.|..+  .|.||..+..++
T Consensus        83 rVrA~~~~~g~wS~WS~~~~~tt  105 (109)
T d1uc6a_          83 QVAAKDNEIGTWSDWSVAAHATP  105 (109)
T ss_dssp             EEECCBSSSCCCCCCCEEEEECC
T ss_pred             EEEEEECCCCCcCCCCCCEEeEC
Confidence            999987543  356666665543

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.5e-09  Score=78.83  Aligned_cols=89  Identities=15%  Similarity=0.052  Sum_probs=59.5

Q ss_pred             CCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEEEEe
Q psy12061        393 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAY  472 (626)
Q Consensus       393 ~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~  472 (626)
                      +|.++++...+... .|+|++|...+    +.+..|.+.......................+.+.+|.++..|.|||+|.
T Consensus         3 ~P~nv~v~s~n~~~-~L~W~pP~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~   77 (98)
T d1fyhb1           3 TPTNVTIESYNMNP-IVYWEYQIMPQ----VPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR   77 (98)
T ss_dssp             CCEEEEEECBSSCC-EEEEECCCCSS----CCEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred             cCCceEEEEeCCcE-EEEECCCCCCC----CCceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEE
Confidence            68899998776555 59999987554    33444444432222222222223333444556788999999999999999


Q ss_pred             eCCCCCCCCccEEE
Q psy12061        473 NNAGEGPESERYLE  486 (626)
Q Consensus       473 ~~~g~s~~s~~~~~  486 (626)
                      |..|.|++++.-.|
T Consensus        78 n~~g~S~ws~s~~f   91 (98)
T d1fyhb1          78 VGQKESAYAKSEEF   91 (98)
T ss_dssp             ETTEECCCEECCCB
T ss_pred             cCCcccCCccCCCc
Confidence            99999998765443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.7e-09  Score=77.72  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=55.3

Q ss_pred             CceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC-----CccCCCeeE--ecCCeEEEeecCCCCCEeEEEEE
Q psy12061         89 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-----NELETPNIN--IDGGLLEITNASFADAGEYECVV  161 (626)
Q Consensus        89 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~a  161 (626)
                      +.+....|++++|.|.+. .|.+  .|.|++++..+.....     ......+..  ..+++|+|.+++.+|+|.|+|.+
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~--~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~   79 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLK--EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES   79 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCS--CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred             cEEEEEECCCEEEEecCC-CCCc--EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEE
Confidence            356788999999999864 4554  5689999887742210     001112222  24578999999999999999999


Q ss_pred             EeCCCceE
Q psy12061        162 KSTVGKIS  169 (626)
Q Consensus       162 ~n~~g~~~  169 (626)
                      .|..++.+
T Consensus        80 ~n~~~t~~   87 (93)
T d1ccza1          80 PNITDTMK   87 (93)
T ss_dssp             TTCCSCEE
T ss_pred             ECCCcEEE
Confidence            88877654

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.7e-08  Score=73.08  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=59.5

Q ss_pred             CCCCCCceEEEee-ecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEE
Q psy12061        390 PQVAPQGVFSRGF-NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVK  468 (626)
Q Consensus       390 p~~~p~~~~~~~~-~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~  468 (626)
                      |. ||.++++... ..+.+.|+|++|.......+.....|.|+|+..+...+......   .   .+..+|.|++.|.|+
T Consensus         2 Pd-PP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~---~---~t~~~L~p~~~Y~v~   74 (94)
T d3d85d3           2 PD-PPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT---D---KTSATVICRKNASIS   74 (94)
T ss_dssp             CC-CCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE---S---SSEEEECCCSSCEEE
T ss_pred             CC-CCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccc---c---ceEEEecCCCCEEEE
Confidence            44 8999999865 35679999999875443333457889999987665544332221   1   124568999999999


Q ss_pred             EEEeeCCCCCCCCccEE
Q psy12061        469 VMAYNNAGEGPESERYL  485 (626)
Q Consensus       469 V~a~~~~g~s~~s~~~~  485 (626)
                      |+|.+..+.|.+|+.-.
T Consensus        75 VRa~~~~~~g~WSeWS~   91 (94)
T d3d85d3          75 VRAQDRYYSSSWSEWAS   91 (94)
T ss_dssp             EEEEESSSCCCCCCCEE
T ss_pred             EEEecCCCCCCCccCcC
Confidence            99999988888887544

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.6e-08  Score=73.20  Aligned_cols=86  Identities=17%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             CCCCceEEEeee-CCCEEEEEEeecCCCCC--CCceeeEEEEEEEeccCCccccceeeecCccceEEecCCCCCceEEEE
Q psy12061        494 QKPPSAVHIKGI-NPTTVHVTWRYVSPSFE--EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR  570 (626)
Q Consensus       494 ~~~p~~l~~~~~-~~~~~~l~W~~~~~~~~--~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~  570 (626)
                      |.||.+|++... ++..+.|+|++|.....  +.....|+|+|+..+.....    .......+.   ..|.|++.|.|+
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~----~~~~~~~t~---~~L~p~~~Y~v~   74 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKK----DRVFTDKTS---ATVICRKNASIS   74 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC----------CEEEESSSE---EEECCCSSCEEE
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccE----EeccccceE---EEecCCCCEEEE
Confidence            358999998865 35679999996443222  33467899999876544221    111122232   457899999999


Q ss_pred             EEEEecCCCCCCCCCc
Q psy12061        571 VLAFSNGGDGRMSSPA  586 (626)
Q Consensus       571 V~a~~~~G~g~~s~~~  586 (626)
                      |+|.+..|.|.+|+.+
T Consensus        75 VRa~~~~~~g~WSeWS   90 (94)
T d3d85d3          75 VRAQDRYYSSSWSEWA   90 (94)
T ss_dssp             EEEEESSSCCCCCCCE
T ss_pred             EEEecCCCCCCCccCc
Confidence            9999999999999864

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-08  Score=75.09  Aligned_cols=87  Identities=16%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             CCCCCCceEEEeeecceEEEEeeeccccccccceeeEEEEEEEEecCCCccceEEEEecCccceEEEeCCccCceEEEEE
Q psy12061        390 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV  469 (626)
Q Consensus       390 p~~~p~~~~~~~~~~~si~l~W~~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V  469 (626)
                      +..|| +|.+.. +.+++.|+|.+|.....   ..+..|.|+|+........... ........+.+.+|+|++.|.|+|
T Consensus         5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~---~~~~~Y~v~y~~~~~~~~~~~~-~~~~~~~~~~l~~L~p~t~Y~~rV   78 (100)
T d2gysa4           5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYE---HIDHTFEIQYRKDTATWKDSKT-ETLQNAHSMALPALEPSTRYWARV   78 (100)
T ss_dssp             CCCCC-EEEEC----CCCEEEEEC-----------CEEEEEEEECSSSCSTTSCE-EEEESCSEEECCCCCSSCCCEEEE
T ss_pred             cCCCC-ccEEEE-CCCEEEEEEecCcccCC---ccceEEEEEEeecccceeceee-cccCCceEEEeCCCCCCCeEEEEE
Confidence            44355 787765 55789999998875432   3456899999876655333222 223345679999999999999999


Q ss_pred             EEeeCCCC--CCCCc
Q psy12061        470 MAYNNAGE--GPESE  482 (626)
Q Consensus       470 ~a~~~~g~--s~~s~  482 (626)
                      +|.+..|.  |.+|+
T Consensus        79 Ra~~~~g~~~g~WSe   93 (100)
T d2gysa4          79 RVRTSRTGYNGIWSE   93 (100)
T ss_dssp             EEEECCTTCCBCCCC
T ss_pred             EEEECCCCCCCCccC
Confidence            99987764  44443

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.3e-09  Score=75.48  Aligned_cols=64  Identities=25%  Similarity=0.530  Sum_probs=46.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCE--Ecc------------CCCcEEEcc----CC--cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIG------------SGGRRKIFE----NG--NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~--~i~------------~~~~~~~~~----~g--~L~i~~v~~~d~G~Y~C~   61 (626)
                      +.+|++|+|.|.........+.|++...  .+.            -.+|.....    .|  +|.|.+++.+|+|.|.|.
T Consensus         6 ~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~   85 (97)
T d2nxyb1           6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   85 (97)
T ss_dssp             EETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred             EEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEE
Confidence            5789999999999877777999998433  221            013333321    12  699999999999999999


Q ss_pred             EEcC
Q psy12061         62 ATNV   65 (626)
Q Consensus        62 a~n~   65 (626)
                      +.+.
T Consensus        86 v~~~   89 (97)
T d2nxyb1          86 VEDQ   89 (97)
T ss_dssp             ETTE
T ss_pred             EecC
Confidence            9653

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.9e-09  Score=75.18  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             CCceEEEeeeCCCEEEEEEeecCCCCCCCceeeEEEEEEEeccCCccccc-eeeecCccceEEecCCCCCceEEEEEEEE
Q psy12061        496 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAF  574 (626)
Q Consensus       496 ~p~~l~~~~~~~~~~~l~W~~~~~~~~~~~i~~Y~i~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~~~Y~~~V~a~  574 (626)
                      +|.+|++...+ ....|.|++  |...++. ..|.|+|+..+...+.... ..........+.+.+|.++..|.|||+|.
T Consensus         6 ~P~nv~~~s~n-~~~~L~W~p--p~~~g~~-~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~   81 (99)
T d1y6kr1           6 SPPSVWFEAEF-FHHILHWTP--IPQQSES-TCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAV   81 (99)
T ss_dssp             CCSCEEEEEET-TEEEEEECC--CTTCCTT-CEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEE
T ss_pred             CCCcceEEEEC-CEEEEEEcC--CCCcCCC-CEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEE
Confidence            46699987655 568899994  4433333 4699999865554221111 11111123345678999999999999999


Q ss_pred             ecCCCCCCCCCcEEE
Q psy12061        575 SNGGDGRMSSPAITF  589 (626)
Q Consensus       575 ~~~G~g~~s~~~~~~  589 (626)
                      |..|.|.|++.-..|
T Consensus        82 n~~g~S~Ws~t~~~f   96 (99)
T d1y6kr1          82 DGSRHSQWTVTNTRF   96 (99)
T ss_dssp             ETTEECCCEECSSCB
T ss_pred             cCCCcCCCcccCcce
Confidence            999999988543334

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.8e-08  Score=78.17  Aligned_cols=77  Identities=21%  Similarity=0.388  Sum_probs=55.9

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEeCCEE----------------cc-----CCCcEEEccC------CcEEEccC
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKKDGNI----------------IG-----SGGRRKIFEN------GNLLISPV   50 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~~~~~----------------i~-----~~~~~~~~~~------g~L~i~~v   50 (626)
                      +.+|++|+|.|.+.+.+.    ..|.|++....                ..     -.+|..+..+      .+|.|.++
T Consensus        16 ~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v   95 (124)
T d1eaja_          16 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNL   95 (124)
T ss_dssp             EETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSC
T ss_pred             EECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEccc
Confidence            468999999999865433    26899972110                00     1245555432      26999999


Q ss_pred             CCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12061         51 SRDDSGIYSCTATNVHGMDESKGRLIVL   78 (626)
Q Consensus        51 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~   78 (626)
                      +.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        96 ~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          96 QLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999988877777888774

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.1e-08  Score=72.40  Aligned_cols=87  Identities=9%  Similarity=0.071  Sum_probs=61.9

Q ss_pred             CCceeEeecCCcCeEEEEEeeCCCCCcccCcceEEEEEEecCCCcceeeeeeeecceeeEEEEeCCCcceeEEEEEEEEe
Q psy12061        290 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI  369 (626)
Q Consensus       290 ~p~~~~~~~~~~~~v~l~W~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~  369 (626)
                      +|.++++.... ....|+|+++ +.++  ....|.|+|+..+...|...............+.+.+|.++..|.|||+|.
T Consensus         6 ~P~nv~~~s~n-~~~~L~W~pp-~~~g--~~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~   81 (99)
T d1y6kr1           6 SPPSVWFEAEF-FHHILHWTPI-PQQS--ESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAV   81 (99)
T ss_dssp             CCSCEEEEEET-TEEEEEECCC-TTCC--TTCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEE
T ss_pred             CCCcceEEEEC-CEEEEEEcCC-CCcC--CCCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEE
Confidence            56688876544 5788999973 2222  246799999998888898764432222122234578899999999999999


Q ss_pred             cCCCCCCCCcc
Q psy12061        370 NDVGPGPESEV  380 (626)
Q Consensus       370 n~~g~~~~s~~  380 (626)
                      |..|.|.|+..
T Consensus        82 n~~g~S~Ws~t   92 (99)
T d1y6kr1          82 DGSRHSQWTVT   92 (99)
T ss_dssp             ETTEECCCEEC
T ss_pred             cCCCcCCCccc
Confidence            99999888653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.2e-08  Score=71.31  Aligned_cols=70  Identities=14%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEeCCEEcc------------CCCcEEEccCC--cEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKKDGNIIG------------SGGRRKIFENG--NLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~~~~~i~------------~~~~~~~~~~g--~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      +..|++|+|.|.......    -.+.|.+++..+-            ..+|.....+|  +|.|.+++.+|+|.|.|.+.
T Consensus         6 ~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~   85 (105)
T d1dr9a1           6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL   85 (105)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEE
T ss_pred             EEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEEE
Confidence            357999999998864322    3689999887641            12455554444  79999999999999999998


Q ss_pred             cCCCCcee
Q psy12061         64 NVHGMDES   71 (626)
Q Consensus        64 n~~g~~~~   71 (626)
                      +..+....
T Consensus        86 ~~~~~~~~   93 (105)
T d1dr9a1          86 KYEKDAFK   93 (105)
T ss_dssp             ECCTTSCE
T ss_pred             eCCCCCeE
Confidence            76554433

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=1.9e-07  Score=68.71  Aligned_cols=76  Identities=22%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe---CCEEc---c--------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK---DGNII---G--------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~---~~~~i---~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||   +..+.   .        ..+|.....++   +|.|.+++.+|+|.|.|.+..
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          12 ASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            5799999999998777666799998   22221   0        12454444333   599999999999999999865


Q ss_pred             CCCCceeeEEEEE
Q psy12061         65 VHGMDESKGRLIV   77 (626)
Q Consensus        65 ~~g~~~~~~~l~v   77 (626)
                      ....-.....|.|
T Consensus        92 ~~~~FG~GT~LtV  104 (106)
T d1a0ql1          92 NLRTFGGGTKLEI  104 (106)
T ss_dssp             SSCEECCCEEEEE
T ss_pred             CCCeECCCeEEEE
Confidence            4322233345555

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=7.5e-08  Score=71.26  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             EecCCcEEEEEEecccCCcceeEEEeeCCEEeccccC------------CccCCCeeEe-cCCeEEEeecCCCCCEeEEE
Q psy12061         93 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL------------NELETPNINI-DGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        93 v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~------------~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      +.+|++++|.|...  |.....+.|+|.........+            ...-..|..+ .+++|.|.+++.+|+|.|+|
T Consensus        11 v~~G~~V~L~c~~~--p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          11 VAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             CCTTCCEEEEEESC--CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ccCCCCEEEEecCC--CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            67999999999743  333457899986543221110            0001234443 67899999999999999999


Q ss_pred             EEEeCCC-ceEEEEEEEE
Q psy12061        160 VVKSTVG-KISTKTTVIV  176 (626)
Q Consensus       160 ~a~n~~g-~~~~~~~l~v  176 (626)
                      .+.+..+ ..+..+.|.|
T Consensus        89 ~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          89 DMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEETTEEECCCCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            9987754 4556666655

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.46  E-value=2.9e-07  Score=67.66  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=47.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|...+.....+.|||  .|...            ....|+.....+   +|.|.+++.+|+|.|.|.+.+
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          13 VATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            6799999999998776666899997  33321            123454443333   599999999999999998765


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (106)
T d1i8ka_          93 N   93 (106)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=3.6e-07  Score=67.33  Aligned_cols=64  Identities=23%  Similarity=0.365  Sum_probs=47.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|...+.....+.|||  .|...            ...+|+....++   .|.|.+++.+|+|.|.|.+..
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          13 VSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            5789999999999776666899998  22211            112455554433   599999999999999998864


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1ospl1          93 S   93 (107)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.8e-08  Score=71.46  Aligned_cols=80  Identities=18%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             CCCCceEEEEeeeCC-CCCC--eeEEEeCCEEccCCCcEEEc-c------CCcEEEccCCCCCCEEEEEEEEcCCCCc--
Q psy12061          2 AGEGGNVTIFCNPEA-APKP--KFVWKKDGNIIGSGGRRKIF-E------NGNLLISPVSRDDSGIYSCTATNVHGMD--   69 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p--~i~W~~~~~~i~~~~~~~~~-~------~g~L~i~~v~~~d~G~Y~C~a~n~~g~~--   69 (626)
                      +.+|+.++|.|.+.| .|.+  +|.|++++..+......... .      ...|.|.-...+|...|+|.|++..+..  
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            368999999999976 5754  79999999987521110000 1      1247776545555558999999876552  


Q ss_pred             -----eeeEEEEEEeCC
Q psy12061         70 -----ESKGRLIVLHGP   81 (626)
Q Consensus        70 -----~~~~~l~v~~~p   81 (626)
                           .....|.|.++|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                 223457776655

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=3.7e-07  Score=66.99  Aligned_cols=64  Identities=22%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc----c--------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII----G--------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i----~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||  .|..+    .        ...+......+   +|.|.+++.+|+|.|.|.+.+
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          13 ASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            5789999999999877777899998  33221    0        12333333222   699999999999999998765


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1c5cl1          93 S   93 (107)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=8.5e-07  Score=66.36  Aligned_cols=77  Identities=27%  Similarity=0.432  Sum_probs=52.2

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEe--CCE-E--c----------cCCCcEEEccCC-----cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKK--DGN-I--I----------GSGGRRKIFENG-----NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~--~~~-~--i----------~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|.+.+. ....+.|||  .|. +  |          ..++|+.+..+.     +|.|.+++.+|+|.|.|
T Consensus        11 v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (114)
T d3bp5a1          11 VSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC   90 (114)
T ss_dssp             EETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEE
Confidence            4689999999998654 345789998  222 1  1          124566654332     49999999999999999


Q ss_pred             EEEcCCCCc----eeeEEEEEE
Q psy12061         61 TATNVHGMD----ESKGRLIVL   78 (626)
Q Consensus        61 ~a~n~~g~~----~~~~~l~v~   78 (626)
                      .+....+..    .....|.|.
T Consensus        91 a~~~~~~~~~~~FG~GT~L~V~  112 (114)
T d3bp5a1          91 GAISLHPKAKIEESPGAELVVT  112 (114)
T ss_dssp             EEECSSSSCCCEECCCEEEEEE
T ss_pred             EEEeCCCCcceEECcCeEEEEE
Confidence            987554321    223566663

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.9e-07  Score=69.23  Aligned_cols=90  Identities=19%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             CCceEEecCCcEEEEEEecccCCc--ceeEEEeeCCEEec---------c-c----cCCccCCCeeEe-------cCCeE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELL--DVAYIWTHNGVRIG---------N-M----DLNELETPNINI-------DGGLL  144 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p--~~~i~W~~~~~~~~---------~-~----~~~~~~~~~~~~-------~~~~l  144 (626)
                      ...+.+..|++++|.|.+...+.+  .+.+.|++......         . .    .....-..|...       +...|
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL   90 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   90 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEE
Confidence            345788999999999998765432  35678986211100         0 0    000001123322       23479


Q ss_pred             EEeecCCCCCEeEEEEEEeCCCceEEEEEEEEe
Q psy12061        145 EITNASFADAGEYECVVKSTVGKISTKTTVIVE  177 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  177 (626)
                      .|.+++.+|+|.|.|.+.+..|..+..+.|.|.
T Consensus        91 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          91 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999999998888888888774

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.1e-07  Score=66.36  Aligned_cols=88  Identities=10%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             EecCCcEEEEEEecc-cCCcceeEEEeeCCEEeccccCCccC-CCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc---
Q psy12061         93 IAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELE-TPNINIDGGLLEITNASFADAGEYECVVKSTVGK---  167 (626)
Q Consensus        93 v~~g~~~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~---  167 (626)
                      +.+|+.++|.|.+.+ .|.+.+.|.|++++..+......... ........+.|.+......+...|+|.|.+..+.   
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            679999999999987 55556788999999998754321111 1111112245666544444455899999987654   


Q ss_pred             ----eEEEEEEEEeCCC
Q psy12061        168 ----ISTKTTVIVEGPP  180 (626)
Q Consensus       168 ----~~~~~~l~v~~~P  180 (626)
                          .+....|.|..+|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                2345567777665

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.40  E-value=6.1e-07  Score=64.46  Aligned_cols=61  Identities=26%  Similarity=0.428  Sum_probs=44.2

Q ss_pred             CceEEEEeeeCCCCCCeeEEEe--CCEE---c---c-----CCCcEEEcc--CC---cEEEccCCCCCCEEEEEEEEcC
Q psy12061          5 GGNVTIFCNPEAAPKPKFVWKK--DGNI---I---G-----SGGRRKIFE--NG---NLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         5 G~~~~l~C~~~g~p~p~i~W~~--~~~~---i---~-----~~~~~~~~~--~g---~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      |++|+|.|...+.....+.|||  .|..   |   .     ..+|+....  ++   +|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            8999999999877777999998  2221   1   1     123443321  11   5999999999999999998754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=6.3e-07  Score=66.14  Aligned_cols=64  Identities=23%  Similarity=0.413  Sum_probs=46.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|+|.........+.|||  .|..+            ...+|.....++   +|.|.+++.+|+|.|.|.+.+
T Consensus        13 v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            5789999999998766667899998  23221            012444443333   599999999999999998764


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1j1pl_          93 S   93 (107)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.38  E-value=5.6e-07  Score=66.76  Aligned_cols=65  Identities=28%  Similarity=0.445  Sum_probs=47.3

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEe------CCEEccCCCcEEEccC-C----cEEEccCCCCCCEEEEEEEEcCC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKK------DGNIIGSGGRRKIFEN-G----NLLISPVSRDDSGIYSCTATNVH   66 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~------~~~~i~~~~~~~~~~~-g----~L~i~~v~~~d~G~Y~C~a~n~~   66 (626)
                      +.+|++++|.|.+.+.  ....+.|||      ....+..++|.....+ +    +|.|.+++.+|+|.|.|.+....
T Consensus        11 ~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          11 KETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             ECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             EcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence            4689999999998654  456899998      2223444455544322 1    59999999999999999887543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.37  E-value=7.2e-07  Score=66.27  Aligned_cols=78  Identities=28%  Similarity=0.428  Sum_probs=51.7

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEeC--CEE---c---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKKD--GNI---I---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~~--~~~---i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|.|.+.+.  ....+.|||-  +..   |         ...+|.....++   .|.|.+++.+|++.|.|.+
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~   91 (114)
T d2rhea_          12 GTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAA   91 (114)
T ss_dssp             ECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEee
Confidence            5789999999998765  3457999972  221   1         012344443332   5999999999999999998


Q ss_pred             EcCCCCc---eeeEEEEEEe
Q psy12061         63 TNVHGMD---ESKGRLIVLH   79 (626)
Q Consensus        63 ~n~~g~~---~~~~~l~v~~   79 (626)
                      .......   .....|+|..
T Consensus        92 ~~~~~~~~~FG~GT~LtVlg  111 (114)
T d2rhea_          92 WNDSLDEPGFGGGTKLTVLG  111 (114)
T ss_dssp             EETTTTEEEECCCEEEEECS
T ss_pred             cCCCCCCCEECCCeEEEECC
Confidence            7532221   1335777644

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.3e-07  Score=69.43  Aligned_cols=79  Identities=25%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             CCCCceEEEEeeeCCCC---CCeeEEEeCCE--E---c-c--------CCCcEEEccCC-----cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP---KPKFVWKKDGN--I---I-G--------SGGRRKIFENG-----NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p---~p~i~W~~~~~--~---i-~--------~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++|+|.|...+..   .-.+.|+|...  .   + .        ..+|..+..+.     +|.|.+++.+|+|.|.
T Consensus        11 ~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   90 (116)
T d1xeda_          11 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYK   90 (116)
T ss_dssp             EETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEE
Confidence            56899999999986432   23678998321  1   1 0        12444443221     5999999999999999


Q ss_pred             EEEEcCCCCceeeEEEEEEeC
Q psy12061         60 CTATNVHGMDESKGRLIVLHG   80 (626)
Q Consensus        60 C~a~n~~g~~~~~~~l~v~~~   80 (626)
                      |.+............|.|...
T Consensus        91 C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          91 CGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEcCCCCceEeEEEEEECC
Confidence            998755444445567777654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.35  E-value=1.1e-06  Score=66.31  Aligned_cols=66  Identities=21%  Similarity=0.358  Sum_probs=48.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc-----------------CCCcEEEccC-C---cEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG-----------------SGGRRKIFEN-G---NLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~-----------------~~~~~~~~~~-g---~L~i~~v~~~d~G~Y   58 (626)
                      +.+|++|+|.|...+.....+.|||  .|..+.                 ...|+.+... +   .|.|.+++.+|+|.|
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Y   92 (118)
T d2ij0c1          13 VKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFY   92 (118)
T ss_dssp             ECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEE
T ss_pred             EcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceE
Confidence            5789999999999777677999998  333210                 1234444322 2   499999999999999


Q ss_pred             EEEEEcCCC
Q psy12061         59 SCTATNVHG   67 (626)
Q Consensus        59 ~C~a~n~~g   67 (626)
                      .|.+....+
T Consensus        93 yCa~~~~~~  101 (118)
T d2ij0c1          93 VCSALAGSG  101 (118)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEecCCC
Confidence            999975443

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=8e-07  Score=65.66  Aligned_cols=64  Identities=25%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEE---c---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||-  +..   |         ....|.....+.   .|.|.+++.+|+|.|.|.+..
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          13 MSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEecC
Confidence            46899999999998776668999972  221   1         012344443222   599999999999999998764


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1kcvl1          93 S   93 (107)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=8.8e-07  Score=65.20  Aligned_cols=63  Identities=27%  Similarity=0.476  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCE-E--cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGN-I--IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~-~--i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|...+.....+.|||  .|. +  |.         ...|+....++   .|.|.+++.+|+|.|.|.+..
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccccc
Confidence            6799999999999876667899997  222 1  11         12444444333   599999999999999997653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.33  E-value=7.5e-07  Score=66.87  Aligned_cols=65  Identities=18%  Similarity=0.195  Sum_probs=46.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEc----c--------CCCcEEEccC-----CcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNII----G--------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i----~--------~~~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|.......+.+.|||.  |..+    .        ...++.+..+     -.|.|.+++.+|+|.|.|.+
T Consensus        13 v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   92 (115)
T d1lp9e1          13 LTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCAL   92 (115)
T ss_dssp             EETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEE
Confidence            57899999999998777778999982  2211    0        1233343321     15999999999999999988


Q ss_pred             EcCC
Q psy12061         63 TNVH   66 (626)
Q Consensus        63 ~n~~   66 (626)
                      ....
T Consensus        93 ~~~~   96 (115)
T d1lp9e1          93 FLAS   96 (115)
T ss_dssp             EECS
T ss_pred             EcCC
Confidence            7543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=3.8e-07  Score=69.65  Aligned_cols=77  Identities=23%  Similarity=0.459  Sum_probs=49.3

Q ss_pred             CCCCceEEEEeeeCCC----CCCeeEEEe--CCE----Ec---------c-----CCCcEEEccC-----CcEEEccCCC
Q psy12061          2 AGEGGNVTIFCNPEAA----PKPKFVWKK--DGN----II---------G-----SGGRRKIFEN-----GNLLISPVSR   52 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~----p~p~i~W~~--~~~----~i---------~-----~~~~~~~~~~-----g~L~i~~v~~   52 (626)
                      +..|++|+|.|.....    ....|.|+|  ++.    .+         .     -.+|..+..+     .+|.|.+++.
T Consensus        11 a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   90 (119)
T d1neua_          11 GAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDY   90 (119)
T ss_dssp             EETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCG
T ss_pred             EeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCCh
Confidence            6789999999997422    234899987  211    11         0     0145555322     3699999999


Q ss_pred             CCCEEEEEEEEcCCCC--ceeeEEEEEE
Q psy12061         53 DDSGIYSCTATNVHGM--DESKGRLIVL   78 (626)
Q Consensus        53 ~d~G~Y~C~a~n~~g~--~~~~~~l~v~   78 (626)
                      +|+|.|.|.+.+..+.  ......|.|.
T Consensus        91 ~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          91 SDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             GGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             HHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999886543  3334566653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.32  E-value=5.7e-07  Score=65.95  Aligned_cols=64  Identities=27%  Similarity=0.365  Sum_probs=45.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|...+.....+.|||  .|..+.            ...+.....+.   .|.|.+++.+|+|.|.|.+..
T Consensus        10 ~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          10 VSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecC
Confidence            5799999999998776556899998  222210            11233332222   599999999999999998764


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        90 ~   90 (103)
T d8faba1          90 N   90 (103)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.2e-06  Score=63.61  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEeC--CEE---c---------cCCCcEEEcc---CC--cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I---------GSGGRRKIFE---NG--NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~---i---------~~~~~~~~~~---~g--~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|...+..  ...+.|+|.  +..   |         ...+|..+..   ++  +|.|.+++.+|+|.|.|
T Consensus         8 ~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C   87 (108)
T d1hkfa_           8 SVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWC   87 (108)
T ss_dssp             ECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEE
Confidence            57999999999976442  246789982  211   1         0124555532   22  59999999999999999


Q ss_pred             EEEcCC
Q psy12061         61 TATNVH   66 (626)
Q Consensus        61 ~a~n~~   66 (626)
                      .+....
T Consensus        88 ~v~~~~   93 (108)
T d1hkfa_          88 RIYRPS   93 (108)
T ss_dssp             EEECTT
T ss_pred             EEecCC
Confidence            987543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=9.6e-07  Score=64.97  Aligned_cols=64  Identities=22%  Similarity=0.321  Sum_probs=46.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc---c---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII---G---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i---~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.....-...+.|||  .|...   .         ..+|+....++   .|.|.+++.+|+|.|.|.+..
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          13 TSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            5789999999998766566899997  22211   0         12444443322   599999999999999998764


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1mexl1          93 S   93 (107)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=1.1e-06  Score=65.66  Aligned_cols=66  Identities=24%  Similarity=0.423  Sum_probs=46.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c---cC------CCcEEEccC--C---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I---GS------GGRRKIFEN--G---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i---~~------~~~~~~~~~--g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|+|.+.+.....+.|||  .|..   +   ..      .++......  +   +|.|.+++.+|+|.|.|.+
T Consensus        12 v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~   91 (113)
T d2bnqd1          12 VPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAV   91 (113)
T ss_dssp             EETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeE
Confidence            4689999999999887667899998  2221   1   01      122222211  1   5999999999999999999


Q ss_pred             EcCCC
Q psy12061         63 TNVHG   67 (626)
Q Consensus        63 ~n~~g   67 (626)
                      ....+
T Consensus        92 ~~~~~   96 (113)
T d2bnqd1          92 RPTSG   96 (113)
T ss_dssp             EESSS
T ss_pred             ecCCC
Confidence            86544

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.7e-06  Score=63.47  Aligned_cols=64  Identities=25%  Similarity=0.424  Sum_probs=45.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c-c--------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I-G--------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i-~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|...+.....+.|||  .+..   | .        ...+.....++   +|.|.+++.+|+|.|.|.+.+
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          13 ASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             ecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            5689999999999876667899998  2221   1 0        11233333333   599999999999999998765


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (108)
T d1jhll_          93 E   93 (108)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.2e-06  Score=64.60  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c-c--------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I-G--------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i-~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||  .|..   | .        ..+++....++   .|.|.+++.+|+|.|.|.+..
T Consensus        13 ~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          13 ASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEeeeC
Confidence            4689999999999766666799998  2221   1 1        12344433222   599999999999999998874


Q ss_pred             CCCCc--eeeEEEEE
Q psy12061         65 VHGMD--ESKGRLIV   77 (626)
Q Consensus        65 ~~g~~--~~~~~l~v   77 (626)
                      .....  .....|+|
T Consensus        93 ~~~~~~FG~GT~LtV  107 (109)
T d1mqkl_          93 GTPPLTFGGGTKLEI  107 (109)
T ss_dssp             SSSSCCBCCCEEEEE
T ss_pred             CCCCcEECCCEEEEE
Confidence            32221  23345555

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.2e-06  Score=64.43  Aligned_cols=64  Identities=30%  Similarity=0.444  Sum_probs=46.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||  .+...            ...+|+....++   +|.|.+++.+|+|.|.|.+..
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          13 ASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeecc
Confidence            5789999999999777667899997  22211            012444443332   599999999999999998765


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1d5il1          93 E   93 (107)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.31  E-value=9.2e-07  Score=66.00  Aligned_cols=64  Identities=33%  Similarity=0.428  Sum_probs=46.7

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEe--CCE----EccCCCcEEEccCC-----cEEEccCCCCCCEEEEEEEEcC
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKK--DGN----IIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~--~~~----~i~~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      +.+|++|+|+|.+++.  +...+.|||  .|.    .+...+|..+..+.     +|.|.+++.+|+|.|.|.+...
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          12 KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             ECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeecc
Confidence            4689999999999654  445799997  222    23344555543321     5999999999999999998643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-06  Score=65.31  Aligned_cols=65  Identities=17%  Similarity=0.355  Sum_probs=41.7

Q ss_pred             CCCCceEEEEeeeCCCCCC---e--eEEEeCCEE-cc---------------CCCcEEEc-cCCcEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---K--FVWKKDGNI-IG---------------SGGRRKIF-ENGNLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~--i~W~~~~~~-i~---------------~~~~~~~~-~~g~L~i~~v~~~d~G~Y~   59 (626)
                      |..|++|+|.|.+...+..   .  +.|.++... +-               -..|.... .+.+|.|.+|+.+|+|.|.
T Consensus         6 a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~   85 (110)
T d1ncna_           6 AYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQ   85 (110)
T ss_dssp             EETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             EEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEEE
Confidence            4579999999998644322   2  444454332 10               01222222 2337999999999999999


Q ss_pred             EEEEcCC
Q psy12061         60 CTATNVH   66 (626)
Q Consensus        60 C~a~n~~   66 (626)
                      |.+....
T Consensus        86 C~V~~~~   92 (110)
T d1ncna_          86 CIIHHKK   92 (110)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9997543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.30  E-value=1e-06  Score=64.80  Aligned_cols=64  Identities=25%  Similarity=0.428  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||  .|..+            ....|.....++   .|.|.+++.+|+|.|.|.+.+
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          13 ASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            5789999999999766567999998  22211            112344443333   599999999999999997764


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        93 ~   93 (107)
T d1tjgl1          93 F   93 (107)
T ss_dssp             B
T ss_pred             C
Confidence            4

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.30  E-value=1.4e-06  Score=64.59  Aligned_cols=64  Identities=25%  Similarity=0.404  Sum_probs=46.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|...+.....+.|||  .|..   |         ....+.....++   .|.|.+++.+|+|.|.|.+..
T Consensus        15 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          15 ASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            5789999999999876666899998  2221   1         112444443333   599999999999999998864


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        95 ~   95 (109)
T d1bwwa_          95 S   95 (109)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.30  E-value=6.4e-07  Score=67.38  Aligned_cols=67  Identities=25%  Similarity=0.508  Sum_probs=47.1

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEe--CCE-E--c-c-----------CCCcEEEccC---C--cEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKK--DGN-I--I-G-----------SGGRRKIFEN---G--NLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~--~~~-~--i-~-----------~~~~~~~~~~---g--~L~i~~v~~~d~G~Y   58 (626)
                      +.+|++|+|.|...+. ....+.|||  .|. +  | .           ..+|+.+..+   +  +|+|.+++.+|+|.|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y   91 (116)
T d1tvda_          12 VASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATY   91 (116)
T ss_dssp             EETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccc
Confidence            5689999999998544 556899997  222 2  1 0           1245555322   1  599999999999999


Q ss_pred             EEEEEcCCCC
Q psy12061         59 SCTATNVHGM   68 (626)
Q Consensus        59 ~C~a~n~~g~   68 (626)
                      .|.+....+.
T Consensus        92 yCa~~~~~~~  101 (116)
T d1tvda_          92 YCAFTLPPPT  101 (116)
T ss_dssp             EEEEECTTTT
T ss_pred             eeeEecCCCC
Confidence            9988765443

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.29  E-value=8.7e-07  Score=66.60  Aligned_cols=65  Identities=18%  Similarity=0.241  Sum_probs=45.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c---cC-------CCcEEEccC--C---cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I---GS-------GGRRKIFEN--G---NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i---~~-------~~~~~~~~~--g---~L~i~~v~~~d~G~Y~C~   61 (626)
                      +.+|++|+|+|.........+.|||  .|..   |   ..       ..+......  +   .|.|.+++.+|+|.|.|.
T Consensus        12 ~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   91 (115)
T d1j8hd1          12 VSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCA   91 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceee
Confidence            5689999999999776667899998  2221   1   11       122222111  1   599999999999999999


Q ss_pred             EEcCC
Q psy12061         62 ATNVH   66 (626)
Q Consensus        62 a~n~~   66 (626)
                      +....
T Consensus        92 ~~~~~   96 (115)
T d1j8hd1          92 VSESP   96 (115)
T ss_dssp             EESST
T ss_pred             ecCCC
Confidence            98653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.28  E-value=7.8e-07  Score=66.73  Aligned_cols=65  Identities=29%  Similarity=0.454  Sum_probs=47.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEE---c---c------CCCcEEEccCC-----cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I---G------SGGRRKIFENG-----NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---i---~------~~~~~~~~~~g-----~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|.....+...+.|||-  +..   |   .      ...|+....+.     +|.|.+++.+|+|.|.|.+
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~   91 (114)
T d2cdea1          12 ILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVV   91 (114)
T ss_dssp             EETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceee
Confidence            56899999999998777779999982  111   1   0      12344443222     5999999999999999999


Q ss_pred             EcCC
Q psy12061         63 TNVH   66 (626)
Q Consensus        63 ~n~~   66 (626)
                      ....
T Consensus        92 ~~~~   95 (114)
T d2cdea1          92 SDRG   95 (114)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            8753

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.28  E-value=1.2e-06  Score=64.27  Aligned_cols=63  Identities=27%  Similarity=0.448  Sum_probs=45.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEE---c---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|...+.-...+.|||-  |..   |         ...+|+....++   .|.|.+++.+|+|.|.|.+..
T Consensus        12 ~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          12 ASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             ECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            57899999999997765668999982  221   1         012344443333   499999999999999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=2e-06  Score=63.89  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=49.2

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEe--CCEEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKK--DGNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~--~~~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      |.+|++|+|.|...+. ....+.|||  .|..+.            ...+..+..++   +|.|.+++.+|+|.|.|.+.
T Consensus        10 v~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (110)
T d2esvd1          10 CAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVV   89 (110)
T ss_dssp             EETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEe
Confidence            5689999999998654 345689998  232110            11222222222   59999999999999999987


Q ss_pred             cCCCCc----eeeEEEEE
Q psy12061         64 NVHGMD----ESKGRLIV   77 (626)
Q Consensus        64 n~~g~~----~~~~~l~v   77 (626)
                      ...+..    .....|.|
T Consensus        90 ~~~~~~~~~FG~GT~L~V  107 (110)
T d2esvd1          90 RSSNTGKLIFGQGTTLQV  107 (110)
T ss_dssp             ESCSSCCCCCCCCEEEEE
T ss_pred             CCCCCCccEECCCEEEEE
Confidence            543321    13456766

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.1e-07  Score=67.73  Aligned_cols=64  Identities=22%  Similarity=0.494  Sum_probs=45.2

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEe--CCEE---cc------------CCCcEEEccC---C--cEEEccCCCCCCEE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKK--DGNI---IG------------SGGRRKIFEN---G--NLLISPVSRDDSGI   57 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~--~~~~---i~------------~~~~~~~~~~---g--~L~i~~v~~~d~G~   57 (626)
                      |.+|++++|.|.+++.  ....+.|+|  .+..   |.            ..+|+.+..+   +  +|+|.+++.+|+|.
T Consensus        11 v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~   90 (113)
T d1smoa_          11 LKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGL   90 (113)
T ss_dssp             CCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCce
Confidence            6799999999998643  345789998  2221   10            0135555432   2  49999999999999


Q ss_pred             EEEEEEcC
Q psy12061         58 YSCTATNV   65 (626)
Q Consensus        58 Y~C~a~n~   65 (626)
                      |.|.+...
T Consensus        91 Y~Cav~~~   98 (113)
T d1smoa_          91 YQCVIYQP   98 (113)
T ss_dssp             EEEEECCT
T ss_pred             EEEEEECC
Confidence            99988644

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.26  E-value=1.1e-06  Score=64.64  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||  .|..+.            ...+.....++   +|.|.+++.+|+|.|.|.+..
T Consensus        12 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          12 VAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecC
Confidence            5789999999998665556899997  222210            12344333333   599999999999999999875


Q ss_pred             CC
Q psy12061         65 VH   66 (626)
Q Consensus        65 ~~   66 (626)
                      ..
T Consensus        92 ~~   93 (109)
T d1w72l1          92 SR   93 (109)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.25  E-value=2.1e-06  Score=64.52  Aligned_cols=63  Identities=19%  Similarity=0.373  Sum_probs=44.3

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEeC-----CEEc------c-----------CCCcEEEcc--C---CcEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKKD-----GNII------G-----------SGGRRKIFE--N---GNLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~~-----~~~i------~-----------~~~~~~~~~--~---g~L~i~~v~~~   53 (626)
                      +.+|++|+|+|.+.+. ....+.|+|-     ++.+      .           ...|.....  +   .+|.|.+++.+
T Consensus        10 v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   89 (115)
T d2atpb1          10 VQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPE   89 (115)
T ss_dssp             ECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGG
T ss_pred             EcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCC
Confidence            6799999999999874 4458999972     2222      0           112333322  1   15999999999


Q ss_pred             CCEEEEEEEEc
Q psy12061         54 DSGIYSCTATN   64 (626)
Q Consensus        54 d~G~Y~C~a~n   64 (626)
                      |+|.|.|.+..
T Consensus        90 Dsg~Y~Ca~~~  100 (115)
T d2atpb1          90 DSDFYFCATVG  100 (115)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CCcEEEEeEcC
Confidence            99999998763

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.6e-07  Score=65.54  Aligned_cols=65  Identities=17%  Similarity=0.138  Sum_probs=45.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEc----cCCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~----~~g~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      |..|++|+|.|... .+...+.|+|+|............    ....+.|.+|+.+|+|.|+|...+...
T Consensus        18 V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          18 IPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             EETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCc
Confidence            45799999999875 355699999976422111111111    112489999999999999999987654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=9.6e-07  Score=66.96  Aligned_cols=63  Identities=17%  Similarity=0.355  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE------c---cC-------------CCcEEEc-cCC---cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI------I---GS-------------GGRRKIF-ENG---NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~------i---~~-------------~~~~~~~-~~g---~L~i~~v~~~   53 (626)
                      +.+|++|+|.|.+.+...+.+.|+|  .|..      |   ..             ..|+... .++   +|.|.+++.+
T Consensus        13 ~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~~~   92 (122)
T d1nezg_          13 AELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKE   92 (122)
T ss_dssp             ECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCCGG
T ss_pred             ECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccccC
Confidence            5789999999999888778999998  2221      1   00             1122221 112   5999999999


Q ss_pred             CCEEEEEEEEc
Q psy12061         54 DSGIYSCTATN   64 (626)
Q Consensus        54 d~G~Y~C~a~n   64 (626)
                      |+|.|.|.+..
T Consensus        93 Dsg~YyCa~~~  103 (122)
T d1nezg_          93 NEGYYFCSVIS  103 (122)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEeeEeC
Confidence            99999998863

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.23  E-value=7.6e-07  Score=66.52  Aligned_cols=76  Identities=30%  Similarity=0.418  Sum_probs=49.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEcc------C------CCcEEEccC--C---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIG------S------GGRRKIFEN--G---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i~------~------~~~~~~~~~--g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|+|...+.....+.|||-  |....      .      ..+.....+  +   +|.|.+++.+|+|.|.|.+
T Consensus        11 ~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (110)
T d1u3ha1          11 VWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA   90 (110)
T ss_dssp             EETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECC
T ss_pred             EcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeee
Confidence            46899999999987655567999982  22210      1      122222211  1   5999999999999999998


Q ss_pred             EcCCCCc---eeeEEEEE
Q psy12061         63 TNVHGMD---ESKGRLIV   77 (626)
Q Consensus        63 ~n~~g~~---~~~~~l~v   77 (626)
                      ....+..   .....|.|
T Consensus        91 ~~~~~~~~~FG~GT~L~V  108 (110)
T d1u3ha1          91 SANSGTYQRFGTGTKLQV  108 (110)
T ss_dssp             EESSSCCCCCCSCEEEEE
T ss_pred             cCCCCCCCEECCCeEEEE
Confidence            7443321   22356665

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.23  E-value=1.1e-06  Score=65.98  Aligned_cols=77  Identities=22%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c---cCC---------CcEEEccC---CcEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I---GSG---------GRRKIFEN---GNLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i---~~~---------~~~~~~~~---g~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++|+|.|.......+.+.|||  .|..   |   ...         .+.....+   -+|.|.+++.+|+|.|.|.
T Consensus        12 v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa   91 (115)
T d1i9ea_          12 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCA   91 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccc
Confidence            5689999999998776667899997  2321   1   011         11111112   2599999999999999998


Q ss_pred             EEcCCCCc--eeeEEEEEE
Q psy12061         62 ATNVHGMD--ESKGRLIVL   78 (626)
Q Consensus        62 a~n~~g~~--~~~~~l~v~   78 (626)
                      +.......  .....|.|.
T Consensus        92 ~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          92 VSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             EEETTEEEEECCCEEEEEE
T ss_pred             ccCCCCCCEECCCEEEEEe
Confidence            86432211  123566663

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1e-06  Score=66.59  Aligned_cols=93  Identities=14%  Similarity=0.165  Sum_probs=57.2

Q ss_pred             CCCceEEecCCcEEEEEEecccC-CcceeEEEeeCC--EEe---c-cc-cCCccCCCeeEe--c----CCeEEEeecCCC
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNG--VRI---G-NM-DLNELETPNINI--D----GGLLEITNASFA  152 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~--~~~---~-~~-~~~~~~~~~~~~--~----~~~l~i~~~~~~  152 (626)
                      .|+.+.+.+|++++|.|...... .....+.|+|..  ..+   . .. ........+..+  .    ...|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            46789999999999999976432 122456798732  111   0 10 111111122222  1    137999999999


Q ss_pred             CCEeEEEEEEeCCCceEEEEEEEEeCC
Q psy12061        153 DAGEYECVVKSTVGKISTKTTVIVEGP  179 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~~~~~~l~v~~~  179 (626)
                      |+|.|.|.+..........+.|.|...
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            999999988755544555677777653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.21  E-value=1.4e-06  Score=64.44  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEe--CCEE---cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKK--DGNI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~--~~~~---i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      +.+|++|+|.|.+.+. ....+.|||  .|..   |-         ..+++....++   .|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          13 LSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             ECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeeecC
Confidence            5789999999998654 344789998  2331   10         12344443333   49999999999999999886


Q ss_pred             cC
Q psy12061         64 NV   65 (626)
Q Consensus        64 n~   65 (626)
                      +.
T Consensus        93 ~~   94 (108)
T d2fx7l1          93 GQ   94 (108)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=2.1e-06  Score=63.23  Aligned_cols=64  Identities=23%  Similarity=0.324  Sum_probs=45.1

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEe---CCEEc-----------cCCCcEEEccCC---cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKK---DGNII-----------GSGGRRKIFENG---NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~---~~~~i-----------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~   61 (626)
                      |.+|++|+|.|..++....   .+.|||   +..+.           ...+|+....++   .|.|.+++.+|+|.|.|.
T Consensus        12 vs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa   91 (110)
T d1oaql_          12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCA   91 (110)
T ss_dssp             ECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEEE
Confidence            5789999999999754322   399998   33321           012444443333   599999999999999999


Q ss_pred             EEcC
Q psy12061         62 ATNV   65 (626)
Q Consensus        62 a~n~   65 (626)
                      +...
T Consensus        92 ~~~~   95 (110)
T d1oaql_          92 LWYS   95 (110)
T ss_dssp             EEET
T ss_pred             cccC
Confidence            8753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=6.1e-06  Score=62.63  Aligned_cols=92  Identities=23%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             eCCCceEEecCCcEEEEEEecccC--CcceeEEEeeC--CE----Eecc--c-----cCCccCCCeeEe------cCCeE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEE--LLDVAYIWTHN--GV----RIGN--M-----DLNELETPNINI------DGGLL  144 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p--~p~~~i~W~~~--~~----~~~~--~-----~~~~~~~~~~~~------~~~~l  144 (626)
                      ..|..+.+..|++++|.|......  ...+.+.|++.  +.    .+..  .     .....-..|+..      .+.+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            457788999999999999976432  22356789762  21    1100  0     000001133332      23479


Q ss_pred             EEeecCCCCCEeEEEEEEeCCC--ceEEEEEEEEe
Q psy12061        145 EITNASFADAGEYECVVKSTVG--KISTKTTVIVE  177 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~n~~g--~~~~~~~l~v~  177 (626)
                      +|.+++..|+|.|.|.+.+..+  .....+.|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999999987544  33445566553

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=7.3e-07  Score=65.66  Aligned_cols=63  Identities=27%  Similarity=0.372  Sum_probs=44.8

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|.........+.|||  .|..+            ....|+....++   +|.|.+++.+|+|.|.|.+..
T Consensus        13 ~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          13 ASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             BCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEECS
T ss_pred             ECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeCC
Confidence            6799999999998877777899997  33221            011222222222   599999999999999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=2.3e-06  Score=63.71  Aligned_cols=63  Identities=29%  Similarity=0.458  Sum_probs=45.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc------------CCCcEEEccC--C---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG------------SGGRRKIFEN--G---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~------------~~~~~~~~~~--g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|...+.....+.|||  .|....            ...|+....+  +   +|.|.+++.+|+|.|.|.+
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   91 (111)
T d1bd2d1          12 VQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAA   91 (111)
T ss_dssp             EETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeec
Confidence            5699999999998877667899998  232210            1133333221  1   5999999999999999988


Q ss_pred             Ec
Q psy12061         63 TN   64 (626)
Q Consensus        63 ~n   64 (626)
                      ..
T Consensus        92 ~~   93 (111)
T d1bd2d1          92 ME   93 (111)
T ss_dssp             ES
T ss_pred             cC
Confidence            74

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=1.7e-06  Score=63.51  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEecc--cc---CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN--MD---LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~--~~---~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++-  |.....  ..   .......++..    ....|.|.+++.+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~   80 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKK--YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE   80 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCC--CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc
Confidence            4456888999999999999998765543  3578872  222210  00   00001122222    2347999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        81 DsA~YyCa~~~   91 (106)
T d1a0ql1          81 DIATYYCLQYY   91 (106)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCEeEEEEEeC
Confidence            99999998754

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.4e-06  Score=58.90  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCc--e
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--I  168 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~--~  168 (626)
                      ..|..|++|+|.|.....   ...+.|+|+|...........    .......|.|.+++..|+|.|+|...+..+.  .
T Consensus        13 ~~V~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~~~~~~~~----~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~   85 (95)
T d1olla1          13 FMVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPP----ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEP   85 (95)
T ss_dssp             SEEETTCCEEEEEECCTT---CCEEEEEETTEEEEEECCSSC----TTCCEEEEEESSCCGGGCEEEEEEEEETTEECCC
T ss_pred             CcccCCCcEEEEEecCCC---ccEEEEEECCCCcceeEEccC----CCccEEEEEEeeeecCCCceEEEEeCCCCCccCC
Confidence            357899999999986543   346789999876543211000    0012236999999999999999998775442  2


Q ss_pred             EEEEEEEE
Q psy12061        169 STKTTVIV  176 (626)
Q Consensus       169 ~~~~~l~v  176 (626)
                      +...+|.|
T Consensus        86 Sd~leL~V   93 (95)
T d1olla1          86 SNLLDLVV   93 (95)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEE
Confidence            33444444

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.19  E-value=1.8e-06  Score=64.28  Aligned_cols=76  Identities=22%  Similarity=0.359  Sum_probs=48.3

Q ss_pred             CCCCceEEEEeeeCCC------CCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAA------PKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~------p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y   58 (626)
                      +.+|++|+|.|.+++.      ....+.|||  .|..+            ...+++....++   +|.|.+++.+|+|.|
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~Y   92 (113)
T d1q9ra1          13 VSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVY   92 (113)
T ss_dssp             EETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEE
Confidence            4689999999987653      113599998  23221            112344333222   599999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEE
Q psy12061         59 SCTATNVHGMDESKGRLIV   77 (626)
Q Consensus        59 ~C~a~n~~g~~~~~~~l~v   77 (626)
                      .|.+.+....-.....|+|
T Consensus        93 yCA~~~~~~~FG~GT~LtV  111 (113)
T d1q9ra1          93 YCKQSYNLRTFGGGTKLEI  111 (113)
T ss_dssp             EEEECSSSCEECCCEEEEE
T ss_pred             EecccCCCCEECCCEEEEE
Confidence            9987643222223455555

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.18  E-value=3.7e-06  Score=62.61  Aligned_cols=66  Identities=21%  Similarity=0.380  Sum_probs=45.4

Q ss_pred             CCCCceEEEEeeeCCC---CCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA---PKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCT   61 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~---p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~   61 (626)
                      +.+|++|+|.|...+.   ....+.|||  .|..+            ....++....++   .|.|.+++.+|+|.|.|.
T Consensus        12 ~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   91 (112)
T d1lgva1          12 GSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS   91 (112)
T ss_dssp             ECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEe
Confidence            5789999999998764   234699998  22211            012333333222   599999999999999999


Q ss_pred             EEcCCC
Q psy12061         62 ATNVHG   67 (626)
Q Consensus        62 a~n~~g   67 (626)
                      +.+..+
T Consensus        92 ~~~~~~   97 (112)
T d1lgva1          92 SYDGSS   97 (112)
T ss_dssp             EECSSS
T ss_pred             eecCCC
Confidence            876544

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.6e-06  Score=64.87  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEe----CCE-E---cc------------CCCcEEEccCC---cEEEccCCCCCCEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKK----DGN-I---IG------------SGGRRKIFENG---NLLISPVSRDDSGI   57 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~----~~~-~---i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~   57 (626)
                      +.+|++|+|.|.+.+. ....+.|+|    .+. .   +.            ...|+.....+   +|.|.+++.+|+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Dsg~   91 (114)
T d1akjd_          12 WNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGY   91 (114)
T ss_dssp             CCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             ccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCCEE
Confidence            5689999999998664 345799998    121 1   10            11344443333   59999999999999


Q ss_pred             EEEEEEcC
Q psy12061         58 YSCTATNV   65 (626)
Q Consensus        58 Y~C~a~n~   65 (626)
                      |.|.+...
T Consensus        92 YyCa~~~~   99 (114)
T d1akjd_          92 YFCSALSN   99 (114)
T ss_dssp             EEEEEEET
T ss_pred             EeEeEcCC
Confidence            99998743

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.18  E-value=3.1e-06  Score=62.84  Aligned_cols=64  Identities=25%  Similarity=0.430  Sum_probs=45.6

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEE---c---------cCCCcEEEccCC---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNI---I---------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~---i---------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.+|++|+|.|.+++.-  ...+.|||  .+..   |         ...+|+....++   +|.|.+++.+|+|.|.|.+
T Consensus        12 v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~   91 (111)
T d1rzfl1          12 AAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGT   91 (111)
T ss_dssp             ECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             eCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEEee
Confidence            57899999999986542  34699997  2221   1         012455544433   5999999999999999998


Q ss_pred             EcC
Q psy12061         63 TNV   65 (626)
Q Consensus        63 ~n~   65 (626)
                      ...
T Consensus        92 ~~~   94 (111)
T d1rzfl1          92 WDS   94 (111)
T ss_dssp             EET
T ss_pred             cCC
Confidence            754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=4.2e-06  Score=60.34  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=47.2

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +++|++++|+|.++|...  -.+.|+|  .|+.+      ..          .+|+.+..+.     .|+|.+++.+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtA   91 (117)
T d1c5db1          12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTA   91 (117)
T ss_dssp             ECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcce
Confidence            578999999999998744  3788987  33322      11          2577776543     3999999999999


Q ss_pred             EEEEEEEc
Q psy12061         57 IYSCTATN   64 (626)
Q Consensus        57 ~Y~C~a~n   64 (626)
                      .|.|....
T Consensus        92 vYYCAr~~   99 (117)
T d1c5db1          92 IYFCTRED   99 (117)
T ss_dssp             EEEEEECC
T ss_pred             EEEEeccC
Confidence            99997643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.17  E-value=3.8e-06  Score=61.20  Aligned_cols=62  Identities=18%  Similarity=0.372  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +.+|++++|.|.++|....  .+.|+|  .|+.+      ..          .+|+.+..|.     .|.|.+++.+|++
T Consensus        12 vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA   91 (120)
T d1dn0b1          12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTA   91 (120)
T ss_dssp             ECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccccc
Confidence            5789999999999997543  688997  33322      11          3577776543     3999999999999


Q ss_pred             EEEEEEE
Q psy12061         57 IYSCTAT   63 (626)
Q Consensus        57 ~Y~C~a~   63 (626)
                      .|.|...
T Consensus        92 ~YYCAr~   98 (120)
T d1dn0b1          92 VYYCARP   98 (120)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEee
Confidence            9999543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.17  E-value=4.3e-06  Score=60.48  Aligned_cols=65  Identities=18%  Similarity=0.385  Sum_probs=47.8

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +++|++++|+|.++|...  -.+.|+|  .|+.+      ..          .+|+.+..+.     .|+|.+++.+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtA   91 (116)
T d7fabh1          12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccce
Confidence            578999999999998744  3788997  33322      11          2566776543     3999999999999


Q ss_pred             EEEEEEEcCC
Q psy12061         57 IYSCTATNVH   66 (626)
Q Consensus        57 ~Y~C~a~n~~   66 (626)
                      .|.|......
T Consensus        92 vYyCAr~~~~  101 (116)
T d7fabh1          92 VYYCARNLIA  101 (116)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEeeeecCC
Confidence            9999875443

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=5e-06  Score=61.77  Aligned_cols=76  Identities=28%  Similarity=0.518  Sum_probs=49.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc----------------CCCcEEEccCC----cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG----------------SGGRRKIFENG----NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~----------------~~~~~~~~~~g----~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++|+|.|...+. ...+.|||  .|..+.                ...++.....+    +|.|.+++.+|+|.|.
T Consensus        11 ~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Yy   89 (111)
T d2esve1          11 IEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYF   89 (111)
T ss_dssp             EETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEE
Confidence            5689999999986543 45899997  222110                12344443322    5999999999999999


Q ss_pred             EEEEcCCCCc--eeeEEEEEE
Q psy12061         60 CTATNVHGMD--ESKGRLIVL   78 (626)
Q Consensus        60 C~a~n~~g~~--~~~~~l~v~   78 (626)
                      |.+.......  .....|.|.
T Consensus        90 Ca~~~~~~~~~FG~GT~LtVl  110 (111)
T d2esve1          90 CASSQDRDTQYFGPGTRLTVL  110 (111)
T ss_dssp             EEEESSSSSCEECCCEEEEEE
T ss_pred             EeeeCCCCccEECCCeEEEEe
Confidence            9877543332  133566664

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=1.3e-06  Score=65.49  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEE---cc---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---i~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|+|...+.-...+.|||-  +..   |.         ...++....++   +|.|.+++.+|+|.|.|.+..
T Consensus        13 ~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          13 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             ECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            67899999999987765567999982  221   11         12333332222   599999999999999998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.16  E-value=3.9e-06  Score=62.21  Aligned_cols=64  Identities=25%  Similarity=0.333  Sum_probs=44.3

Q ss_pred             CCCCceEEEEeeeCCC----CCCeeEEEe--CCEEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA----PKPKFVWKK--DGNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~----p~p~i~W~~--~~~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|.+...    ....+.|||  .|....            ...+.....++   +|.|.+++.+|+|.|.|
T Consensus        13 v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   92 (111)
T d1j05a_          13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYC   92 (111)
T ss_dssp             CCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEEE
Confidence            6789999999987542    123499998  333210            12344443333   59999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .+.+.
T Consensus        93 a~~~~   97 (111)
T d1j05a_          93 QQTNE   97 (111)
T ss_dssp             EECSS
T ss_pred             eecCC
Confidence            88654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=1.9e-06  Score=64.66  Aligned_cols=76  Identities=26%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             CCCCceEEEEeeeCCC-CCCeeEEEe--CCEEcc------C-------CCcEEEcc--CC---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-PKPKFVWKK--DGNIIG------S-------GGRRKIFE--NG---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p~p~i~W~~--~~~~i~------~-------~~~~~~~~--~g---~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|..... ....+.|||  .|..+.      .       ..+.....  ++   +|.|.+++.+|+|.|.|
T Consensus        12 v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   91 (114)
T d2ak4d1          12 VVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFC   91 (114)
T ss_dssp             EETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceE
Confidence            5789999999987543 445789998  232210      0       12222221  22   59999999999999999


Q ss_pred             EEEcCCCCce----eeEEEEE
Q psy12061         61 TATNVHGMDE----SKGRLIV   77 (626)
Q Consensus        61 ~a~n~~g~~~----~~~~l~v   77 (626)
                      .+....+...    ....|.|
T Consensus        92 a~~~~~~~~~l~FG~GT~L~V  112 (114)
T d2ak4d1          92 ALSGFYNTDKLIFGTGTRLQV  112 (114)
T ss_dssp             EEECSBTTSCCEECCCEEEEE
T ss_pred             eCCCCCCCCcCEECCCEEEEE
Confidence            9886654321    2345655

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.15  E-value=3.7e-06  Score=62.95  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=52.2

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEecc----c-cCCccCCCeeEe------cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN----M-DLNELETPNINI------DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~----~-~~~~~~~~~~~~------~~~~l~i~~~~  150 (626)
                      +.++|..+.+.+|++++|.|........  .+.|+|.  |.....    . ........++..      ....|.|.+++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~--~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSP--FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQ   81 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSC--CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcC--CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccc
Confidence            3456788899999999999998876654  4589872  322110    0 000000112222      13469999999


Q ss_pred             CCCCEeEEEEEEeCCC
Q psy12061        151 FADAGEYECVVKSTVG  166 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g  166 (626)
                      .+|+|.|.|.+....+
T Consensus        82 ~~Dsg~YyCa~~~~~~   97 (115)
T d1lp9e1          82 LSDSALYYCALFLASS   97 (115)
T ss_dssp             GGGCEEEEEEEEECSS
T ss_pred             cccCccceEEEEcCCC
Confidence            9999999998765443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.14  E-value=1.6e-06  Score=63.86  Aligned_cols=65  Identities=25%  Similarity=0.316  Sum_probs=46.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc----c--------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII----G--------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i----~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      |.+|++|+|.|.........+.|||  .|..+    .        ..+|+....++   .|.|.+++.+|+|.|.|.+..
T Consensus        11 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            4689999999998655555799998  23211    0        12344443322   599999999999999999875


Q ss_pred             CC
Q psy12061         65 VH   66 (626)
Q Consensus        65 ~~   66 (626)
                      ..
T Consensus        91 ~~   92 (108)
T d1nfde1          91 GD   92 (108)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2e-06  Score=61.67  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc--CCcEEEccCCCCCCEEEEEEEEcCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCTATNVHG   67 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~--~g~L~i~~v~~~d~G~Y~C~a~n~~g   67 (626)
                      |..|++|+|.|.... +...+.|+|+|.......+..-..  ...+.|.+|+..|+|.|+|...+..+
T Consensus        15 V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          15 VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            457999999999753 456899999987432110000000  11489999999999999999876543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=1.7e-07  Score=67.48  Aligned_cols=66  Identities=24%  Similarity=0.482  Sum_probs=46.7

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc------------CCCcEEEccC-----CcEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~------------~~~~~~~~~~-----g~L~i~~v~~~d~G~Y~C~a   62 (626)
                      |.||++|+|+|...+. ...+.|||  .|..+.            ..+|..+..+     -+|.|.+++.+|+|.|.|.+
T Consensus         5 V~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~   83 (96)
T d1ymmd1           5 IQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT   83 (96)
T ss_dssp             CSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEE
T ss_pred             ECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeE
Confidence            6799999999998653 45899998  233221            1233333221     15999999999999999998


Q ss_pred             EcCCCC
Q psy12061         63 TNVHGM   68 (626)
Q Consensus        63 ~n~~g~   68 (626)
                      ....|.
T Consensus        84 ~~~~g~   89 (96)
T d1ymmd1          84 DTTSGT   89 (96)
T ss_dssp             EETTSC
T ss_pred             ecCCCC
Confidence            766543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.13  E-value=4.4e-06  Score=61.79  Aligned_cols=77  Identities=17%  Similarity=0.291  Sum_probs=50.4

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccccCCccCCCeeEe----c--CCeEEEeecCCCCCEe
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINI----D--GGLLEITNASFADAGE  156 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~----~--~~~l~i~~~~~~d~g~  156 (626)
                      .+.|..+.+.+|++++|.|...+.......+.|++.  |..... .+..  ..++..    .  ...|+|.+++.+|+|.
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~-~~~~--~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~   79 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE-SISK--GGRYVETVNSGSKSFSLRINDLTVEDGGT   79 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE-ECCC--BTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeee-eecc--CCcEeeEEecCCceeeeEecCCcCccCEE
Confidence            456788899999999999998765433335689972  221110 0111  122221    1  2379999999999999


Q ss_pred             EEEEEEeC
Q psy12061        157 YECVVKST  164 (626)
Q Consensus       157 Y~C~a~n~  164 (626)
                      |.|.+...
T Consensus        80 YyCA~~~~   87 (112)
T d1sq2n_          80 YRCGLGVA   87 (112)
T ss_dssp             EEEEECBT
T ss_pred             EeEEEecC
Confidence            99987644

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-06  Score=62.15  Aligned_cols=81  Identities=15%  Similarity=0.079  Sum_probs=50.7

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeCCCce--
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--  168 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~~g~~--  168 (626)
                      ..|..|++|+|.|.....   ...+.|+|+|........  ............+.|.+++..|+|.|+|...+.....  
T Consensus        16 ~~V~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~--~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~   90 (99)
T d1ucta1          16 PVIPLDGSVKIQCQAIRE---AYLTQLMIIKNSTYREIG--RRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRY   90 (99)
T ss_dssp             SEEETTCCEEEEECCCTT---CSEEEEEEEETTEEEECS--EECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CceeCCCeEEEEEcCCCC---CcEEEEEECCCcCceecc--ccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCC
Confidence            358899999999976533   346788887643221110  0001111234579999999999999999998876533  


Q ss_pred             EEEEEEEE
Q psy12061        169 STKTTVIV  176 (626)
Q Consensus       169 ~~~~~l~v  176 (626)
                      +...+|.|
T Consensus        91 Sdpl~L~V   98 (99)
T d1ucta1          91 SDTLELVV   98 (99)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEe
Confidence            33344443

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.12  E-value=4e-06  Score=61.34  Aligned_cols=63  Identities=24%  Similarity=0.351  Sum_probs=42.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeC--CEEc---c---------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEEc
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKD--GNII---G---------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATN   64 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~i---~---------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~n   64 (626)
                      +.+|++|+|.|..... ...+.|||-  +...   .         ...+......+   +|.|.+++.+|+|.|.|.+..
T Consensus        12 ~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          12 ASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             ECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEecC
Confidence            4689999999997553 446899982  2211   0         11233322222   599999999999999997754


Q ss_pred             C
Q psy12061         65 V   65 (626)
Q Consensus        65 ~   65 (626)
                      .
T Consensus        91 ~   91 (104)
T d1yqvl1          91 R   91 (104)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.12  E-value=4.7e-06  Score=62.02  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccccCCccCCCeeEe--c--CCeEEEeecCCCCCEeE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMDLNELETPNINI--D--GGLLEITNASFADAGEY  157 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~g~Y  157 (626)
                      +.+.|..+.+.+|++++|.|...+.......+.|++  .|...... +...+......  .  ...|+|.+++.+|+|.|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQS-ISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceee-eeecccccceeECCCCceeeeecccccCCcceE
Confidence            345688899999999999999876543333568986  33322110 11111111111  1  13799999999999999


Q ss_pred             EEEEEe
Q psy12061        158 ECVVKS  163 (626)
Q Consensus       158 ~C~a~n  163 (626)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.12  E-value=5.2e-06  Score=61.40  Aligned_cols=64  Identities=23%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             CCCCceEEEEeeeCCC-C---CCeeEEEeC--CEEc----c--------CCCcEEEccCC---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-P---KPKFVWKKD--GNII----G--------SGGRRKIFENG---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-p---~p~i~W~~~--~~~i----~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|.+++. .   ...+.|||.  |...    .        ...|.....++   .|.|.+++.+|+|.|.|
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyC   92 (111)
T d2gsia1          13 VSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYC   92 (111)
T ss_dssp             EETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEEE
Confidence            5689999999987643 1   235899982  2211    1        12454443333   59999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .+...
T Consensus        93 a~~~~   97 (111)
T d2gsia1          93 SHIRE   97 (111)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            87644

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.11  E-value=4.1e-06  Score=60.62  Aligned_cols=65  Identities=17%  Similarity=0.368  Sum_probs=47.4

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------cc-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IG-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|+|  .|+.      |.           ..+|+.+..|.     .|.|.+++.+|+
T Consensus        12 ~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDt   91 (117)
T d1iqdb1          12 KKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDT   91 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcc
Confidence            468999999999998643  3678987  2221      11           13566666543     399999999999


Q ss_pred             EEEEEEEEcCC
Q psy12061         56 GIYSCTATNVH   66 (626)
Q Consensus        56 G~Y~C~a~n~~   66 (626)
                      +.|.|......
T Consensus        92 AvYYCA~~~~~  102 (117)
T d1iqdb1          92 AVYYCAVPDPD  102 (117)
T ss_dssp             EEEEEEECSSS
T ss_pred             eEEEEeEcCCC
Confidence            99999876543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.09  E-value=5.2e-06  Score=62.59  Aligned_cols=63  Identities=17%  Similarity=0.338  Sum_probs=45.2

Q ss_pred             CCCceEEEEeeeCCCC--CCeeEEEe--CCEEc------c-----------CCCcEEEccC--C---cEEEccCCCCCCE
Q psy12061          3 GEGGNVTIFCNPEAAP--KPKFVWKK--DGNII------G-----------SGGRRKIFEN--G---NLLISPVSRDDSG   56 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~i------~-----------~~~~~~~~~~--g---~L~i~~v~~~d~G   56 (626)
                      .+|++++|.|.++|..  ...+.|||  .|+.+      .           ..+|+.+..+  .   .|.|.+++.+|+|
T Consensus        14 ~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa   93 (123)
T d1hxmb1          14 TLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIA   93 (123)
T ss_dssp             ETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCc
Confidence            4799999999998753  34799998  22211      0           1246666532  2   4999999999999


Q ss_pred             EEEEEEEcC
Q psy12061         57 IYSCTATNV   65 (626)
Q Consensus        57 ~Y~C~a~n~   65 (626)
                      .|.|.+...
T Consensus        94 ~YyCA~~~~  102 (123)
T d1hxmb1          94 TYYCALWEA  102 (123)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEeeeCC
Confidence            999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=3.6e-06  Score=63.96  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=49.3

Q ss_pred             CCCCceEEEEeeeCC---CCC---CeeEEEeCCE----Ec-----------cCCCcEEEccC-----CcEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEA---APK---PKFVWKKDGN----II-----------GSGGRRKIFEN-----GNLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g---~p~---p~i~W~~~~~----~i-----------~~~~~~~~~~~-----g~L~i~~v~~~d~   55 (626)
                      |.+|++|+|.|....   .+.   -.+.|++.+.    .+           ...+|..+..+     .+|.|.+|+.+|+
T Consensus        12 ~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   91 (118)
T d1qfoa_          12 GLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDS   91 (118)
T ss_dssp             EETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGC
T ss_pred             EecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChhHC
Confidence            679999999999742   111   2567887322    11           12356666532     2699999999999


Q ss_pred             EEEEEEEEcCCCCce---eeEEEEE
Q psy12061         56 GIYSCTATNVHGMDE---SKGRLIV   77 (626)
Q Consensus        56 G~Y~C~a~n~~g~~~---~~~~l~v   77 (626)
                      |.|.|.+....+...   ....|.|
T Consensus        92 G~Y~C~v~~~~~~~~~~~~~~~ltV  116 (118)
T d1qfoa_          92 GTYNFRFEISDSNRWLDVKGTTVTV  116 (118)
T ss_dssp             EEEEEEEECC-CCEEECSSCEEEEE
T ss_pred             EEEEEEEEeCCCCeEEcCCCEEEEE
Confidence            999999976544322   2345555

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=8.5e-06  Score=60.62  Aligned_cols=76  Identities=22%  Similarity=0.364  Sum_probs=49.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEE---c-------------cCCCcEEEccCC----cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I-------------GSGGRRKIFENG----NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~---i-------------~~~~~~~~~~~g----~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++++|.|...+ ....+.|||  .+..   |             ...+|+......    +|.|.+++.+|+|.|.
T Consensus        11 ~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   89 (112)
T d1kgce1          11 AKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYL   89 (112)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEE
Confidence            568999999998754 346899998  2221   1             012344333222    5999999999999999


Q ss_pred             EEEEcCCCCc---eeeEEEEEE
Q psy12061         60 CTATNVHGMD---ESKGRLIVL   78 (626)
Q Consensus        60 C~a~n~~g~~---~~~~~l~v~   78 (626)
                      |.+....+..   .....|.|.
T Consensus        90 Ca~~~~~~~~~~FG~GT~LtV~  111 (112)
T d1kgce1          90 CASSLGQAYEQYFGPGTRLTVT  111 (112)
T ss_dssp             EEEESSTTSCCEECCCEEEEEE
T ss_pred             EeeeCCCCCCcEECcCEEEEEe
Confidence            9987433222   123566664

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=6.5e-06  Score=61.37  Aligned_cols=80  Identities=19%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec------cccCCccCCCeeEe----c--CCeEEEeecC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG------NMDLNELETPNINI----D--GGLLEITNAS  150 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~------~~~~~~~~~~~~~~----~--~~~l~i~~~~  150 (626)
                      .+.|..+.+.+|++++|.|...+... ...+.|+|  .|....      ..........|+..    .  ...|.|.+++
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~-~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSE-DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCT-TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCC-cceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            34678899999999999999876433 23568987  333221      00000111233332    1  1359999999


Q ss_pred             CCCCEeEEEEEEeCC
Q psy12061        151 FADAGEYECVVKSTV  165 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~  165 (626)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          82 RNDSGIYLCGAISLH   96 (114)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cCCCeEEEEEEEeCC
Confidence            999999999886543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=4.8e-06  Score=61.98  Aligned_cols=64  Identities=17%  Similarity=0.281  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCCCC-CCeeEEEe--CCEEcc------------CCCcEEEccCC---cEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-KPKFVWKK--DGNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-~p~i~W~~--~~~~i~------------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      +.+|++|+|.|...+.. ...+.|||  .|..+.            ...+..+..++   .|.|.+++.+|+|.|.|.+.
T Consensus        10 ~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~   89 (112)
T d1kgcd1          10 SNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILP   89 (112)
T ss_dssp             EETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECC
T ss_pred             ECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEe
Confidence            46899999999987654 34699998  233221            11233333333   49999999999999999876


Q ss_pred             cC
Q psy12061         64 NV   65 (626)
Q Consensus        64 n~   65 (626)
                      ..
T Consensus        90 ~~   91 (112)
T d1kgcd1          90 LA   91 (112)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.08  E-value=4.9e-06  Score=60.64  Aligned_cols=64  Identities=22%  Similarity=0.470  Sum_probs=48.0

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      |.+|++++|.|.++|...  -.+.|+|  .|+.      |..          .+|+.+..+.     .|.|.+++.+|++
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA   90 (119)
T d1kxvc_          11 VPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTA   90 (119)
T ss_dssp             ECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcc
Confidence            578999999999998754  3788998  2221      111          2577776654     3999999999999


Q ss_pred             EEEEEEEcC
Q psy12061         57 IYSCTATNV   65 (626)
Q Consensus        57 ~Y~C~a~n~   65 (626)
                      .|.|.....
T Consensus        91 ~YYCAr~~~   99 (119)
T d1kxvc_          91 MYYCKPSLR   99 (119)
T ss_dssp             EEEEEEEES
T ss_pred             eEeeeeccc
Confidence            999977644

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.08  E-value=5.2e-06  Score=61.49  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec---cc--cCCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG---NM--DLNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~---~~--~~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.++| .+.+.+|++++|.|.+.+.....-.+.|++-  +....   ..  ........++..    ....|.|.+++.+
T Consensus         4 ltQ~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (114)
T d2rhea_           4 LTQPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESE   82 (114)
T ss_dssp             SBCCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cccCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcc
Confidence            34554 7899999999999998765433334689962  22211   00  001111122222    2358999999999


Q ss_pred             CCEeEEEEEEeCCCce---EEEEEEEEeCC
Q psy12061        153 DAGEYECVVKSTVGKI---STKTTVIVEGP  179 (626)
Q Consensus       153 d~g~Y~C~a~n~~g~~---~~~~~l~v~~~  179 (626)
                      |++.|.|.+.......   -....|.|.+-
T Consensus        83 DsA~YyCA~~~~~~~~~~FG~GT~LtVlg~  112 (114)
T d2rhea_          83 DEADYYCAAWNDSLDEPGFGGGTKLTVLGQ  112 (114)
T ss_dssp             GCEEEEEEEEETTTTEEEECCCEEEEECSC
T ss_pred             cCceEEEeecCCCCCCCEECCCeEEEECCC
Confidence            9999999876432211   13346666543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.08  E-value=5.8e-06  Score=60.77  Aligned_cols=64  Identities=17%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCC----CCeeEEEe--CCEEcc----------------CCCcEEEccCC-----cEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP----KPKFVWKK--DGNIIG----------------SGGRRKIFENG-----NLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p----~p~i~W~~--~~~~i~----------------~~~~~~~~~~g-----~L~i~~v~~~d   54 (626)
                      +.+|++++|+|.++|..    ...+.|+|  .|+.+.                ..+|+.+..+.     .|.|.+++.+|
T Consensus        12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eD   91 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVD   91 (120)
T ss_dssp             CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGG
T ss_pred             ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeecc
Confidence            57899999999998752    24688997  233210                13567765443     49999999999


Q ss_pred             CEEEEEEEEcC
Q psy12061         55 SGIYSCTATNV   65 (626)
Q Consensus        55 ~G~Y~C~a~n~   65 (626)
                      ++.|.|.....
T Consensus        92 sAvYyCAr~~~  102 (120)
T d2agjh1          92 TATYYCARTSG  102 (120)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEeeEecCC
Confidence            99999976543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=3.6e-06  Score=63.21  Aligned_cols=66  Identities=24%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             CCCCceEEEEeeeCC-CCCCeeEEEe--CCEEcc-------------CCCcEEEccC---C--cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEA-APKPKFVWKK--DGNIIG-------------SGGRRKIFEN---G--NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g-~p~p~i~W~~--~~~~i~-------------~~~~~~~~~~---g--~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|...+ .....+.|||  .|..+.             ..++..+..+   +  +|.|.+++.+|+|.|.|
T Consensus        11 ~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   90 (115)
T d1fo0a_          11 VMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFC   90 (115)
T ss_dssp             EETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             EcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccc
Confidence            578999999999854 3445789998  222110             0133333221   1  49999999999999999


Q ss_pred             EEEcCCC
Q psy12061         61 TATNVHG   67 (626)
Q Consensus        61 ~a~n~~g   67 (626)
                      .+....+
T Consensus        91 a~~~~~~   97 (115)
T d1fo0a_          91 AMRGDYG   97 (115)
T ss_dssp             EEECCCT
T ss_pred             eeecCCC
Confidence            9875443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.08  E-value=6.5e-06  Score=60.36  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc--c---cCCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN--M---DLNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~--~---~~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|+|  .|.....  .   ........++..    ....|.|.+++.+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~--~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYS--RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTE   81 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCccc--ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccc
Confidence            3456888999999999999998765443  468997  2322211  0   001111223322    2358999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1ospl1          82 DVATYFCQQYW   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCCcEEEeecc
Confidence            99999997754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=8.6e-06  Score=60.63  Aligned_cols=76  Identities=29%  Similarity=0.466  Sum_probs=49.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe---CCEEc---c--C-----CCcEEEcc--C---CcEEEccCCCCCCEEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK---DGNII---G--S-----GGRRKIFE--N---GNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~---~~~~i---~--~-----~~~~~~~~--~---g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      +.+|++|+|.|...+. ...+.|||   ++.+.   .  .     ......+.  .   .+|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (113)
T d1h5ba_          13 LHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE   91 (113)
T ss_dssp             EETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEec
Confidence            4689999999998764 45899998   22221   0  0     01111111  1   159999999999999999988


Q ss_pred             cCCCCc----eeeEEEEEE
Q psy12061         64 NVHGMD----ESKGRLIVL   78 (626)
Q Consensus        64 n~~g~~----~~~~~l~v~   78 (626)
                      ...+..    .....|.|.
T Consensus        92 ~~~~~~~~~FG~GT~L~V~  110 (113)
T d1h5ba_          92 ASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             CSSSSSSCEECCCEEEEEE
T ss_pred             CCCCCCeeEECcCEEEEEE
Confidence            655432    233577663

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=5.6e-06  Score=61.78  Aligned_cols=76  Identities=24%  Similarity=0.394  Sum_probs=50.4

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------cC------CCcEEEccC--C---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------GS------GGRRKIFEN--G---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------~~------~~~~~~~~~--g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|...+. ...+.|||  .|..+      ..      ..+.....+  +   +|.|.+++.+|+|.|.|.+
T Consensus        12 ~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (115)
T d1ogad1          12 IQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAG   90 (115)
T ss_dssp             EETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccc
Confidence            4689999999998765 44899998  22211      11      122222111  1   5999999999999999998


Q ss_pred             EcCCCCc--eeeEEEEEE
Q psy12061         63 TNVHGMD--ESKGRLIVL   78 (626)
Q Consensus        63 ~n~~g~~--~~~~~l~v~   78 (626)
                      ....+..  .....|.|.
T Consensus        91 ~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          91 AGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             ECTTSSEEECCCEEEEEE
T ss_pred             cCCCCCcEECCCEEEEEe
Confidence            7654432  234677774

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=9.7e-06  Score=61.23  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=49.7

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec-------ccc--------CCccCCCeeE---ecC--
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG-------NMD--------LNELETPNIN---IDG--  141 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~-------~~~--------~~~~~~~~~~---~~~--  141 (626)
                      +...|..+.+.+|++++|.|.+.+.....  +.|+|  .|..+.       ...        .......++.   ..+  
T Consensus         4 ~~~~P~~~~~~~G~~vtL~C~~~~~~~~~--v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           4 LRIFPKKMDAELGQKVDLVCEVLGSVSQG--CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCSSC--EEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             eEEcCCEEEECCCCCEEEEEEEcCccCCC--EEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            34468889999999999999988766554  47876  232210       000        0000011221   112  


Q ss_pred             CeEEEeecCCCCCEeEEEEEEe
Q psy12061        142 GLLEITNASFADAGEYECVVKS  163 (626)
Q Consensus       142 ~~l~i~~~~~~d~g~Y~C~a~n  163 (626)
                      ..|+|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            3699999999999999998753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=8.6e-06  Score=57.88  Aligned_cols=63  Identities=17%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             CCceEEEEeeeCCCCCC--eeEEEe--CCEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCCEE
Q psy12061          4 EGGNVTIFCNPEAAPKP--KFVWKK--DGNII------G-----------SGGRRKIFENG-----NLLISPVSRDDSGI   57 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~p--~i~W~~--~~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~G~   57 (626)
                      +|++++|+|.++|....  -+.|+|  .|+.+      .           ..+|+.+..+.     .|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            59999999999997443  789997  33322      1           12677776654     39999999999999


Q ss_pred             EEEEEEcCC
Q psy12061         58 YSCTATNVH   66 (626)
Q Consensus        58 Y~C~a~n~~   66 (626)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999865443

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=3.2e-06  Score=62.70  Aligned_cols=65  Identities=25%  Similarity=0.343  Sum_probs=45.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc------------CCCcEEEcc--CC---cEEEccCCCCCCEEEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG------------SGGRRKIFE--NG---NLLISPVSRDDSGIYSCTA   62 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~------------~~~~~~~~~--~g---~L~i~~v~~~d~G~Y~C~a   62 (626)
                      +.+|++|+|.|.....-...+.|||  .|..+.            ...++....  ++   .|.|.++..+|+|.|.|.+
T Consensus        12 ~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~   91 (110)
T d1ac6a_          12 LSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCAL   91 (110)
T ss_dssp             EETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceee
Confidence            4689999999998665556899998  232110            012333321  11   5999999999999999998


Q ss_pred             EcCC
Q psy12061         63 TNVH   66 (626)
Q Consensus        63 ~n~~   66 (626)
                      ....
T Consensus        92 ~~~~   95 (110)
T d1ac6a_          92 SGGN   95 (110)
T ss_dssp             EETT
T ss_pred             cCCC
Confidence            7543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.06  E-value=5.7e-06  Score=60.64  Aligned_cols=63  Identities=24%  Similarity=0.418  Sum_probs=45.5

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|+|  -|+.+      .           ..+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDs   91 (119)
T d1qnzh_          12 VKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDS   91 (119)
T ss_dssp             ECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGC
T ss_pred             ECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccce
Confidence            468999999999988632  3689997  33321      1           12566665432     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|...-
T Consensus        92 AvYYCA~~~  100 (119)
T d1qnzh_          92 AVYYCAIHY  100 (119)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEEEec
Confidence            999997643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=60.03  Aligned_cols=86  Identities=16%  Similarity=0.328  Sum_probs=51.7

Q ss_pred             eEEecCCcEEEEEEecccCC---cceeEEEeeCCEEe-ccc--------cCCccCCCeeE--ecCCeEEEeecCCCCCEe
Q psy12061         91 ITIAAHRNLQLRCSAHTEEL---LDVAYIWTHNGVRI-GNM--------DLNELETPNIN--IDGGLLEITNASFADAGE  156 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~~~~~~-~~~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~  156 (626)
                      +.+..|++++|.|.....+.   ..+.+.|.++.... ...        .....-..+..  ..+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            56788999999999864432   23456676654332 110        00011112222  345689999999999999


Q ss_pred             EEEEEEeCC--Cce---EEEEEEEE
Q psy12061        157 YECVVKSTV--GKI---STKTTVIV  176 (626)
Q Consensus       157 Y~C~a~n~~--g~~---~~~~~l~v  176 (626)
                      |.|.+....  |..   ...+.|.|
T Consensus        84 Y~C~V~~~~~~~~~~~~~~~~~L~V  108 (110)
T d1ncna_          84 YQCIIHHKKPTGMIRIHQMNSELSV  108 (110)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEcceEEEEE
Confidence            999986443  321   34455554

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=60.10  Aligned_cols=64  Identities=22%  Similarity=0.395  Sum_probs=44.6

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc---------------CCCcEEEccC-C---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG---------------SGGRRKIFEN-G---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~---------------~~~~~~~~~~-g---~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|...+. ...+.|||  .|....               ...+...... +   +|.|.+++.+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (113)
T d2ntsp1          11 KTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLC   89 (113)
T ss_dssp             EETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeee
Confidence            5689999999997553 46899998  333210               1233323222 1   59999999999999999


Q ss_pred             EEEcCC
Q psy12061         61 TATNVH   66 (626)
Q Consensus        61 ~a~n~~   66 (626)
                      .+....
T Consensus        90 A~~~~~   95 (113)
T d2ntsp1          90 ASSLAD   95 (113)
T ss_dssp             EEESSS
T ss_pred             eeeCCC
Confidence            987543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.05  E-value=6.9e-06  Score=60.71  Aligned_cols=64  Identities=27%  Similarity=0.353  Sum_probs=42.5

Q ss_pred             CCCCceEEEEeeeCCCC-----CCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP-----KPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p-----~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++|+|.|.+++..     ..-+.||+  .|..+            ...++......+   .|.|.+++.+|+|.|.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAvYY   92 (112)
T d1ncwl1          13 VTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYY   92 (112)
T ss_dssp             EETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEeEE
Confidence            46899999999876532     23589997  22221            012343332222   5999999999999999


Q ss_pred             EEEEcC
Q psy12061         60 CTATNV   65 (626)
Q Consensus        60 C~a~n~   65 (626)
                      |...+.
T Consensus        93 C~~~~~   98 (112)
T d1ncwl1          93 CWQGTH   98 (112)
T ss_dssp             EEECSS
T ss_pred             EEcCCC
Confidence            965443

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.05  E-value=9.3e-06  Score=60.21  Aligned_cols=63  Identities=27%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             CCCCceEEEEeeeCCC-----CCCeeEEEe--CCEEc------------cCCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-----PKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-----p~p~i~W~~--~~~~i------------~~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      +.+|++|+|.|..++.     ....+.|||  .|...            ...+|+....++   +|.|.+++.+|+|.|.
T Consensus        14 ~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   93 (113)
T d1n4xl_          14 VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYY   93 (113)
T ss_dssp             ECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEEE
Confidence            4789999999998653     224799997  23221            012344433333   5999999999999999


Q ss_pred             EEEEc
Q psy12061         60 CTATN   64 (626)
Q Consensus        60 C~a~n   64 (626)
                      |...+
T Consensus        94 Ca~~~   98 (113)
T d1n4xl_          94 CFQGS   98 (113)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            97654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.05  E-value=9.5e-06  Score=60.08  Aligned_cols=62  Identities=26%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             CCCCceEEEEeeeCCC-----CCCeeEEEe--CCEEc----c--------CCCcEEEccCC---cEEEccCCCCCCEEEE
Q psy12061          2 AGEGGNVTIFCNPEAA-----PKPKFVWKK--DGNII----G--------SGGRRKIFENG---NLLISPVSRDDSGIYS   59 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-----p~p~i~W~~--~~~~i----~--------~~~~~~~~~~g---~L~i~~v~~~d~G~Y~   59 (626)
                      |.+|++|+|.|.+++.     ....+.|||  .|...    .        ...|.....++   .|.|.+++.+|+|.|.
T Consensus        13 v~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYy   92 (112)
T d1mjul1          13 VTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYY   92 (112)
T ss_dssp             ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEE
Confidence            5689999999998764     234789997  23221    1        12344333333   4999999999999999


Q ss_pred             EEEE
Q psy12061         60 CTAT   63 (626)
Q Consensus        60 C~a~   63 (626)
                      |...
T Consensus        93 Ca~~   96 (112)
T d1mjul1          93 CLQH   96 (112)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9644

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=1.5e-05  Score=59.50  Aligned_cols=76  Identities=18%  Similarity=0.363  Sum_probs=49.1

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------cC---------CCcEEEccC----CcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------GS---------GGRRKIFEN----GNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------~~---------~~~~~~~~~----g~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|.... ....+.|||  .|..+      ..         ..+......    .+|.|.+++.+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyC   89 (114)
T d1ogae1          11 RKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLC   89 (114)
T ss_dssp             EETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEE
T ss_pred             EcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEE
Confidence            568999999999863 356899998  22211      00         122222211    259999999999999999


Q ss_pred             EEEcCCCCc---eeeEEEEEE
Q psy12061         61 TATNVHGMD---ESKGRLIVL   78 (626)
Q Consensus        61 ~a~n~~g~~---~~~~~l~v~   78 (626)
                      .+....+..   .....|+|.
T Consensus        90 a~~~~~~~~~~FG~GT~LtV~  110 (114)
T d1ogae1          90 ASSSRSSYEQYFGPGTRLTVT  110 (114)
T ss_dssp             EEESSTTSCCEECCCEEEEEE
T ss_pred             eeccCCCCccEECCCEEEEEC
Confidence            887544331   223566663

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.04  E-value=3e-06  Score=61.94  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc---c--cCCccCCCeeE----ecCCeEEEeecCCCC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN---M--DLNELETPNIN----IDGGLLEITNASFAD  153 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~---~--~~~~~~~~~~~----~~~~~l~i~~~~~~d  153 (626)
                      .+| ..+.+.+|++++|.|........  .+.|+|  .|.....   .  ........++.    .....|.|.+++.+|
T Consensus         3 tQp-~sl~~~~G~svtl~C~~~~~~~~--~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   79 (103)
T d8faba1           3 TQP-PSVSVSPGQTARITCSANALPNQ--YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAED   79 (103)
T ss_dssp             BCC-SEEEECTTSCEEEEEECTTGGGS--CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGG
T ss_pred             CCC-CeEEECCCCCEEEEEEeCCCCCC--CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhH
Confidence            344 48899999999999998765433  358997  2322210   0  00000011111    123589999999999


Q ss_pred             CEeEEEEEEeC
Q psy12061        154 AGEYECVVKST  164 (626)
Q Consensus       154 ~g~Y~C~a~n~  164 (626)
                      +|.|.|.+...
T Consensus        80 sa~YyCA~~~~   90 (103)
T d8faba1          80 EADYYCQAWDN   90 (103)
T ss_dssp             CEEEEEEEEET
T ss_pred             CceEEeeecCC
Confidence            99999976543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.03  E-value=5.5e-06  Score=61.54  Aligned_cols=64  Identities=22%  Similarity=0.301  Sum_probs=44.7

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEEcc------------CCCcEEEccC--C---cEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNIIG------------SGGRRKIFEN--G---NLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~i~------------~~~~~~~~~~--g---~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++|+|.|.+++..  ..-+.|+|  .+..+.            ..+|.....+  +   .|.|.+++.+|+|.|.|
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyC   91 (111)
T d1cd0a_          12 ESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYC   91 (111)
T ss_dssp             ECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEE
Confidence            57899999999997653  23599998  232210            1244444322  1   59999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .+.+.
T Consensus        92 A~~~~   96 (111)
T d1cd0a_          92 QSYDA   96 (111)
T ss_dssp             EEEET
T ss_pred             eeccC
Confidence            87653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.7e-06  Score=62.02  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             ceEEecCCcEEEEEEecccCC--cceeEEEeeCCEEecccc-----CCccCCCeeEe---cCCeEEEeecCCCCCEeEEE
Q psy12061         90 KITIAAHRNLQLRCSAHTEEL--LDVAYIWTHNGVRIGNMD-----LNELETPNINI---DGGLLEITNASFADAGEYEC  159 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~--p~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C  159 (626)
                      .+++..|++++|.|.......  ..+.+.|.+++..+....     .......+...   ++.+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            467889999999998764332  235688999887653211     00000122332   24589999999999999999


Q ss_pred             EEEeCCCc
Q psy12061        160 VVKSTVGK  167 (626)
Q Consensus       160 ~a~n~~g~  167 (626)
                      .+.+..+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            99865443

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.03  E-value=5.4e-06  Score=60.88  Aligned_cols=78  Identities=17%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccc----c-CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNM----D-LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~----~-~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++  .|.....-    . .......++..    ....|+|.+++.+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTS--ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCc--cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence            3456888999999999999998765444  347876  33322100    0 00001112222    2347999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999996653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=6.2e-06  Score=60.24  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=50.7

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec----cc-cCCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG----NM-DLNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~----~~-~~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|+|  .|....    .. ........+...    ....|.|.+++.+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~--~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISG--YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCC--CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhccc
Confidence            3456788999999999999998765543  358986  333321    10 000111112221    2348999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1c5cl1          82 DFADYYCLQYA   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCeEEEEecCc
Confidence            99999997654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.3e-06  Score=62.06  Aligned_cols=71  Identities=18%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             eEEecCCcEEEEEEecccCCcceeEEEeeCCE--Eecccc-C----CccCCCeeEe-------cCCeEEEeecCCCCCEe
Q psy12061         91 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV--RIGNMD-L----NELETPNINI-------DGGLLEITNASFADAGE  156 (626)
Q Consensus        91 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~--~~~~~~-~----~~~~~~~~~~-------~~~~l~i~~~~~~d~g~  156 (626)
                      +...+|++++|.|.......  ..+.|++...  .+.... .    ...-..|+..       .+.+|.|.+++.+|+|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKS--IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSC--CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEEcCCcEEEEEEEecCCC--ceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence            45689999999998776544  3568987432  221110 0    0000122211       23479999999999999


Q ss_pred             EEEEEEe
Q psy12061        157 YECVVKS  163 (626)
Q Consensus       157 Y~C~a~n  163 (626)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999864

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.02  E-value=6.7e-06  Score=60.40  Aligned_cols=64  Identities=25%  Similarity=0.534  Sum_probs=47.6

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|+.+..+.     .|+|.+++.+|+
T Consensus        11 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDt   90 (124)
T d1zvya1          11 VQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDT   90 (124)
T ss_dssp             CCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcc
Confidence            578999999999998744  3789998  2322      211           2566676543     399999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      +.|.|.....
T Consensus        91 AvYYCAr~~~  100 (124)
T d1zvya1          91 AIYTCGATRK  100 (124)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEeeccc
Confidence            9999987643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=8.5e-06  Score=59.69  Aligned_cols=79  Identities=15%  Similarity=0.197  Sum_probs=49.1

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec----ccc-CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG----NMD-LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~----~~~-~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++  .+....    ... .......+...    ....|.|.+++.+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   81 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISK--SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE   81 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCC--ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEec
Confidence            3456788899999999999998765443  357886  222211    000 00000111111    2237999999999


Q ss_pred             CCEeEEEEEEeC
Q psy12061        153 DAGEYECVVKST  164 (626)
Q Consensus       153 d~g~Y~C~a~n~  164 (626)
                      |+|.|.|.+.+.
T Consensus        82 Dsa~YyCA~~~~   93 (108)
T d1jhll_          82 DFAMYICQQHNE   93 (108)
T ss_dssp             CCSEEEEEECSS
T ss_pred             cceEEEEeeCCC
Confidence            999999976543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=8.2e-06  Score=61.99  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             CCCCceEEEEeeeCCC-------CCCeeEEEeCCEEcc-----------------CCCcEEEccC-----CcEEEccCCC
Q psy12061          2 AGEGGNVTIFCNPEAA-------PKPKFVWKKDGNIIG-----------------SGGRRKIFEN-----GNLLISPVSR   52 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~-------p~p~i~W~~~~~~i~-----------------~~~~~~~~~~-----g~L~i~~v~~   52 (626)
                      |.+|++|+|.|..+..       ....+.|++.+..-.                 -.+|..+..+     -+|.|.+|+.
T Consensus        13 v~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   92 (121)
T d2g5ra1          13 VQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARM   92 (121)
T ss_dssp             ECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSCCG
T ss_pred             EccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCCCh
Confidence            5799999999997421       113688998533210                 0246666543     2699999999


Q ss_pred             CCCEEEEEEEEcC
Q psy12061         53 DDSGIYSCTATNV   65 (626)
Q Consensus        53 ~d~G~Y~C~a~n~   65 (626)
                      +|+|.|.|.+...
T Consensus        93 ~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          93 SDAGRYFFRMEKG  105 (121)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             HHCEEEEEEEEeC
Confidence            9999999999754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=4.1e-06  Score=62.68  Aligned_cols=80  Identities=23%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec-----cccCCccCCCeeEe------cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG-----NMDLNELETPNINI------DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~-----~~~~~~~~~~~~~~------~~~~l~i~~~~  150 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++-  +....     ..........++..      ....|+|.+++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~--~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFS--NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCS--EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCcc--CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC
Confidence            3456888999999999999998775544  4689862  22111     00000001112221      22479999999


Q ss_pred             CCCCEeEEEEEEeCC
Q psy12061        151 FADAGEYECVVKSTV  165 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~  165 (626)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          81 LSDSASYICVVSDRG   95 (114)
T ss_dssp             GGGCSEEEEEEECSC
T ss_pred             hhhCcccceeeecCC
Confidence            999999999987643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.01  E-value=7.1e-06  Score=61.17  Aligned_cols=81  Identities=23%  Similarity=0.461  Sum_probs=51.8

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccc-----cCCccCCCeeE--e----cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNM-----DLNELETPNIN--I----DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~--~----~~~~l~i~~~~  150 (626)
                      +.+.|..+.+.+|++++|.|...+....  .+.|+|  .|......     ........+..  .    ....|.|.+++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~--~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIY--NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ   80 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEE--EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCccc--CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC
Confidence            3456788999999999999998776543  468997  22221110     00000011111  1    12389999999


Q ss_pred             CCCCEeEEEEEEeCCC
Q psy12061        151 FADAGEYECVVKSTVG  166 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g  166 (626)
                      .+|+|.|.|.+....+
T Consensus        81 ~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          81 PGDSATYLCAVRPTSG   96 (113)
T ss_dssp             GGGCEEEEEEEEESSS
T ss_pred             CCCCcEEeEeEecCCC
Confidence            9999999999875544

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.01  E-value=5.1e-06  Score=59.12  Aligned_cols=62  Identities=19%  Similarity=0.410  Sum_probs=44.8

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      |++|++++|.|.++|..  .-.+.|+|  .|+.+      ..          .+|..+..+.     .|+|.+++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            68999999999999862  34678997  22221      11          2577776554     3999999999999


Q ss_pred             EEEEEEE
Q psy12061         57 IYSCTAT   63 (626)
Q Consensus        57 ~Y~C~a~   63 (626)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999753

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=6.6e-06  Score=60.34  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec---ccc--CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG---NMD--LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~---~~~--~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.++|..+.+.+|++++|.|........  .+.|+|  .|....   ...  .......++..    ....|.|.+++.+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGT--NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSE   81 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCC--ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhee
Confidence            4567888999999999999997665443  358996  232221   100  00111123332    2347999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |++.|.|.+..
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1mexl1          82 DLAEYFCQQYN   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cceeEEEeECC
Confidence            99999997653

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.01  E-value=8e-06  Score=59.60  Aligned_cols=64  Identities=20%  Similarity=0.436  Sum_probs=47.0

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 vkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDt   91 (123)
T d1mqkh_          12 VQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDT   91 (123)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcc
Confidence            578999999999998743  3678987  3321      211           2566776543     399999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      +.|.|.....
T Consensus        92 AvYYCAr~~~  101 (123)
T d1mqkh_          92 AMYYCVRHEY  101 (123)
T ss_dssp             EEEEEEEEET
T ss_pred             cceeEEecCC
Confidence            9999987644

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6e-06  Score=62.80  Aligned_cols=78  Identities=21%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             CCCceEEecCCcEEEEEEecccCC-----cceeEEEeeCCEEeccccC----------CccCCCeeEe------cCCeEE
Q psy12061         87 LPPKITIAAHRNLQLRCSAHTEEL-----LDVAYIWTHNGVRIGNMDL----------NELETPNINI------DGGLLE  145 (626)
Q Consensus        87 ~~~~~~v~~g~~~~l~C~~~~~p~-----p~~~i~W~~~~~~~~~~~~----------~~~~~~~~~~------~~~~l~  145 (626)
                      .|..+++.+|++|+|.|.......     ..+.+.|++.+..-....+          ......|..+      .+.+|+
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            467899999999999999853211     2356789875333221110          0001223332      234799


Q ss_pred             EeecCCCCCEeEEEEEEeC
Q psy12061        146 ITNASFADAGEYECVVKST  164 (626)
Q Consensus       146 i~~~~~~d~g~Y~C~a~n~  164 (626)
                      |.+++.+|+|.|.|.+...
T Consensus        87 I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCChHHCEEEEEEEEeC
Confidence            9999999999999998653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=57.18  Aligned_cols=62  Identities=15%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             CCceEEEEeeeCC-CCCCeeEEEeCCEEccCCCcEEEcc--CC------cEEEccCCCCCCEEEEEEEEcCCCC
Q psy12061          4 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFE--NG------NLLISPVSRDDSGIYSCTATNVHGM   68 (626)
Q Consensus         4 ~G~~~~l~C~~~g-~p~p~i~W~~~~~~i~~~~~~~~~~--~g------~L~i~~v~~~d~G~Y~C~a~n~~g~   68 (626)
                      .|+.++|.|.+.| .|.|+|.|++||..+..........  +|      .|.|.   ..+...|+|.+....-.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCC
Confidence            5778999999988 5999999999999886543333322  23      25554   45678999999877544

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.00  E-value=7.6e-06  Score=59.31  Aligned_cols=66  Identities=21%  Similarity=0.405  Sum_probs=48.4

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|....  .+.|+|  .|+.      |..           .+|..+..|.     .|.|.+++.+|+
T Consensus        12 vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDt   91 (118)
T d2fbjh1          12 VQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDT   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcc
Confidence            5789999999999997443  678887  3321      211           2566776654     399999999999


Q ss_pred             EEEEEEEEcCCC
Q psy12061         56 GIYSCTATNVHG   67 (626)
Q Consensus        56 G~Y~C~a~n~~g   67 (626)
                      +.|.|......+
T Consensus        92 AvYYCAr~~~~~  103 (118)
T d2fbjh1          92 ALYYCARLHYYG  103 (118)
T ss_dssp             EEEEEEEEETTT
T ss_pred             eEEEeeEecCCC
Confidence            999998765433

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=7.8e-06  Score=59.97  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc---cc--CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN---MD--LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~---~~--~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++  .+.....   ..  ...-...++..    ....|.|.+++.+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~--~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~   81 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINS--YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCC--ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCc
Confidence            3456788899999999999998765443  357986  2322210   00  00000122221    2348999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1d5il1          82 DMGIYYCLQYD   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEeeecc
Confidence            99999997654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=8.4e-06  Score=58.88  Aligned_cols=62  Identities=23%  Similarity=0.449  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|....  .+.|+|  .|+.      |.           ..+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDT   91 (117)
T d1jnhb1          12 ARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDS   91 (117)
T ss_dssp             CCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcc
Confidence            5789999999999987443  788997  2221      11           12577776553     399999999999


Q ss_pred             EEEEEEEE
Q psy12061         56 GIYSCTAT   63 (626)
Q Consensus        56 G~Y~C~a~   63 (626)
                      +.|.|...
T Consensus        92 AvYYCAr~   99 (117)
T d1jnhb1          92 AVYSCSRG   99 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.99  E-value=1e-05  Score=59.87  Aligned_cols=63  Identities=16%  Similarity=0.333  Sum_probs=43.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------cC---------CCcEEEcc----CCcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------GS---------GGRRKIFE----NGNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------~~---------~~~~~~~~----~g~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|+|...+. ...+.|||  .|...      ..         ..+.....    +..|.|.+++.+|+|.|.|
T Consensus        13 ~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   91 (110)
T d2aq2a1          13 AVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFC   91 (110)
T ss_dssp             ECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEE
Confidence            5799999999998653 56899998  23211      00         11222111    1259999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .+...
T Consensus        92 a~~~~   96 (110)
T d2aq2a1          92 ASGGG   96 (110)
T ss_dssp             EEEET
T ss_pred             eeCCC
Confidence            88743

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.99  E-value=9.9e-06  Score=58.50  Aligned_cols=61  Identities=21%  Similarity=0.378  Sum_probs=45.1

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|+.+..|.     .|.|.+++.+|+
T Consensus        12 ~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDt   91 (118)
T d1nlbh1          12 KKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDT   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcc
Confidence            578999999999998643  3788987  3321      221           2566666543     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (118)
T d1nlbh1          92 ATYFCAR   98 (118)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEee
Confidence            9999954

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=5.1e-06  Score=60.89  Aligned_cols=65  Identities=20%  Similarity=0.454  Sum_probs=47.0

Q ss_pred             CCCCceEEEEeeeCCC--CCCeeEEEe--CCE----EccC-----------CCcEEEccCC-----cEEEccCCCCCCEE
Q psy12061          2 AGEGGNVTIFCNPEAA--PKPKFVWKK--DGN----IIGS-----------GGRRKIFENG-----NLLISPVSRDDSGI   57 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~--p~p~i~W~~--~~~----~i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~G~   57 (626)
                      +.||++++|.|.+++.  ..-.+.|+|  .|+    .|..           .+|+.+..+.     +|+|.+++.+|+|.
T Consensus         7 ~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~   86 (110)
T d1u9ka_           7 LVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGL   86 (110)
T ss_dssp             ECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEE
Confidence            5799999999999764  445789998  232    1111           1466665432     49999999999999


Q ss_pred             EEEEEEcCC
Q psy12061         58 YSCTATNVH   66 (626)
Q Consensus        58 Y~C~a~n~~   66 (626)
                      |.|......
T Consensus        87 YyCa~~~~~   95 (110)
T d1u9ka_          87 YRCVIYHPP   95 (110)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEeCCC
Confidence            999986443

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.99  E-value=6.5e-06  Score=60.20  Aligned_cols=76  Identities=20%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec--ccc---CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG--NMD---LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~--~~~---~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +++.|..+.+.+|++++|.|.....- .  .+.|++-  +....  ...   .......++..    ....|.|.+++.+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~~-~--~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   79 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSSV-N--YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETE   79 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSCC-S--CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCC-C--ccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcc
Confidence            44668889999999999999865432 2  3589863  22211  000   00000112221    2247999999999


Q ss_pred             CCEeEEEEEE
Q psy12061        153 DAGEYECVVK  162 (626)
Q Consensus       153 d~g~Y~C~a~  162 (626)
                      |+|.|.|.+.
T Consensus        80 Dsa~YyCa~~   89 (104)
T d1yqvl1          80 DAATYYCQQW   89 (104)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCCeEEEEec
Confidence            9999999654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.99  E-value=7.3e-06  Score=59.37  Aligned_cols=62  Identities=26%  Similarity=0.512  Sum_probs=46.1

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|....  .+.|+|  .|+.      |. .          .+|+.+..+.     .|.|.+++.+|+
T Consensus        11 ~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDt   90 (117)
T d1um5h1          11 VKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDS   90 (117)
T ss_dssp             ECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcc
Confidence            5789999999999987443  789998  2321      21 1          2566665543     399999999999


Q ss_pred             EEEEEEEE
Q psy12061         56 GIYSCTAT   63 (626)
Q Consensus        56 G~Y~C~a~   63 (626)
                      +.|.|...
T Consensus        91 AvYYCAr~   98 (117)
T d1um5h1          91 AVYYCARS   98 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9e-06  Score=60.15  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec----cc-cCCccCCCeeEe------cCCeEEEeecCCCCC
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG----NM-DLNELETPNINI------DGGLLEITNASFADA  154 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~----~~-~~~~~~~~~~~~------~~~~l~i~~~~~~d~  154 (626)
                      ++.+.+.+|++++|.|...........+.|+|.  +....    .. ........+...      ....|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            456788999999999987654333334579872  22211    00 000111122222      123799999999999


Q ss_pred             EeEEEEEEeCCC
Q psy12061        155 GEYECVVKSTVG  166 (626)
Q Consensus       155 g~Y~C~a~n~~g  166 (626)
                      |.|.|.+.....
T Consensus        83 G~Y~C~v~~~~~   94 (108)
T d1hkfa_          83 GHYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEEECTTT
T ss_pred             EEEEEEEecCCC
Confidence            999998875443

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.98  E-value=1.2e-05  Score=59.20  Aligned_cols=78  Identities=15%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEeccc---c--CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNM---D--LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~~---~--~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++-  +.....-   .  .......++..    ....|.|.+++.+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGT--YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAD   81 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCC--ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheec
Confidence            3456888999999999999998776544  3589862  2222100   0  00000112221    3347999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        82 DSa~YyCa~~~   92 (107)
T d1kcvl1          82 DDADYYCGQSY   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEecC
Confidence            99999997653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=8.6e-06  Score=59.33  Aligned_cols=63  Identities=19%  Similarity=0.439  Sum_probs=47.0

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...-  -+.|+|  .|+.      |..           .+|+.+..+.     .|.|.+++.+|+
T Consensus        13 vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDt   92 (122)
T d1vgeh1          13 KKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDT   92 (122)
T ss_dssp             ECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcc
Confidence            5789999999999987543  688998  2221      111           2677776543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        93 A~YYCAr~~  101 (122)
T d1vgeh1          93 AVYYCARDP  101 (122)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEeecC
Confidence            999998764

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.97  E-value=1.3e-05  Score=58.70  Aligned_cols=64  Identities=17%  Similarity=0.389  Sum_probs=46.5

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------cC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------GS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  ..+.|+|  -|+.+      ..           .+|+.+..+.     .|+|.+++.+|+
T Consensus        12 vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDt   91 (120)
T d1pg7x1          12 VKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDS   91 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcc
Confidence            468999999999988643  3688997  33321      11           2466665433     399999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      +.|.|.....
T Consensus        92 A~YYCAr~~~  101 (120)
T d1pg7x1          92 AVYYCAREDF  101 (120)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEeeecCC
Confidence            9999987643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.97  E-value=7.9e-06  Score=58.90  Aligned_cols=63  Identities=19%  Similarity=0.412  Sum_probs=46.4

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------cc-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IG-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |.           -.+|+.+..+.     .|.|.+++.+|+
T Consensus        12 vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDT   91 (117)
T d1jpth1          12 VQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDT   91 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCc
Confidence            578999999999999753  3788887  2321      21           12566676543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (117)
T d1jpth1          92 AVYYCARDT  100 (117)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeecC
Confidence            999997643

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=2.2e-05  Score=58.29  Aligned_cols=63  Identities=14%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------c---------CCCcEEEccC----CcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------G---------SGGRRKIFEN----GNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------~---------~~~~~~~~~~----g~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++++|.|..+.. ...+.|||  .|..+      .         ...+......    -.|.|.++..+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyC   89 (112)
T d2bnub1          11 LKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFC   89 (112)
T ss_dssp             EETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEE
Confidence            5689999999998654 46899998  23221      0         0122222221    259999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .+...
T Consensus        90 A~~~~   94 (112)
T d2bnub1          90 ASSYV   94 (112)
T ss_dssp             EEECS
T ss_pred             eecCC
Confidence            88643

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.97  E-value=9.5e-06  Score=58.85  Aligned_cols=61  Identities=20%  Similarity=0.438  Sum_probs=44.4

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|..  .-.+.|+|  .|+.      |. .          .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDt   91 (115)
T d1f3dh1          12 VKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDS   91 (115)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCc
Confidence            57899999999998863  34789997  3332      21 1          1466665432     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (115)
T d1f3dh1          92 AVYYCAN   98 (115)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999964

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.96  E-value=5.9e-06  Score=58.80  Aligned_cols=62  Identities=23%  Similarity=0.429  Sum_probs=45.9

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-------------CCcEEEccCC-----cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-------------GGRRKIFENG-----NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-------------~~~~~~~~~g-----~L~i~~v~~~   53 (626)
                      |.+|++++|+|.++|...  --+.|+|  .|+.      |..             .+|+.+..+.     .|.|.+++.+
T Consensus        12 vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~e   91 (109)
T d2ck0h1          12 VQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTE   91 (109)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHh
Confidence            578999999999998643  3788887  2321      111             2477776643     3999999999


Q ss_pred             CCEEEEEEEE
Q psy12061         54 DSGIYSCTAT   63 (626)
Q Consensus        54 d~G~Y~C~a~   63 (626)
                      |++.|.|.-.
T Consensus        92 DTAvYYCAr~  101 (109)
T d2ck0h1          92 DTGIYYCVRG  101 (109)
T ss_dssp             GCEEEEEEEE
T ss_pred             HCEEEEEEEc
Confidence            9999999853

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.96  E-value=6.3e-06  Score=59.21  Aligned_cols=61  Identities=20%  Similarity=0.439  Sum_probs=45.4

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|..+..+.     .|+|.+++.+|+
T Consensus        12 vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDt   91 (114)
T d1indh1          12 VKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDT   91 (114)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcc
Confidence            578999999999998743  3788987  2321      211           2577776543     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|..
T Consensus        92 AvYYCA~   98 (114)
T d1indh1          92 ALYFCAS   98 (114)
T ss_dssp             EEEEEEC
T ss_pred             cEEEECC
Confidence            9999974

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.96  E-value=1.1e-05  Score=59.25  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=50.3

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecccc-----CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMD-----LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~~-----~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|+|  .|.....--     .......++..    ....|+|.+++.+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGN--NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCc--ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcC
Confidence            3456888999999999999997765443  358986  333321100     00001122222    2348999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1j1pl_          82 DFGMYFCQQAN   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEEEcCC
Confidence            99999997653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.1e-06  Score=62.01  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec------c-cc----CCccCCCeeEe----cCCeEEEe
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG------N-MD----LNELETPNINI----DGGLLEIT  147 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~------~-~~----~~~~~~~~~~~----~~~~l~i~  147 (626)
                      .+.|.+.++.+|++++|.|.+....... .+.|+|-  |....      . ..    .......++..    ....|.|.
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~-~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTS-GCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCS-CEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCC-CEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            3457888999999999999987654322 4689872  21111      0 00    01111223322    22379999


Q ss_pred             ecCCCCCEeEEEEEEeC
Q psy12061        148 NASFADAGEYECVVKST  164 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~  164 (626)
                      +++.+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999987643

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.95  E-value=5.8e-06  Score=61.91  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec--c----ccCC--ccCCCeeEe----cCCeEEEeec
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG--N----MDLN--ELETPNINI----DGGLLEITNA  149 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~--~----~~~~--~~~~~~~~~----~~~~l~i~~~  149 (626)
                      +.++|..+.+.+|++++|.|........  .+.|+|  .|....  .    ....  .....+...    ....|.|.++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~--~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASV   80 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCC--CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccc
Confidence            3456778999999999999998765443  347886  332211  0    0000  000111111    2247999999


Q ss_pred             CCCCCEeEEEEEEeC
Q psy12061        150 SFADAGEYECVVKST  164 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~  164 (626)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          81 HWSDSAVYFCAVSGF   95 (115)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             cccccceecccccCC
Confidence            999999999987643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.95  E-value=1e-05  Score=60.12  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             eeeCCCceEEecCCcEEEEEEeccc----CCcceeEEEeeC--CEEec----ccc-CCccCCCeeEe----cCCeEEEee
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTE----ELLDVAYIWTHN--GVRIG----NMD-LNELETPNINI----DGGLLEITN  148 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~----p~p~~~i~W~~~--~~~~~----~~~-~~~~~~~~~~~----~~~~l~i~~  148 (626)
                      +.+.|..+.+.+|++++|.|...+.    ....-.+.|+|.  |....    ... .......++..    ....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            3456888999999999999987642    111123689872  32211    000 00000112221    223799999


Q ss_pred             cCCCCCEeEEEEEE
Q psy12061        149 ASFADAGEYECVVK  162 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~  162 (626)
                      ++.+|+|.|.|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.95  E-value=9.5e-06  Score=59.80  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec---cccC--CccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG---NMDL--NELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~---~~~~--~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|....... ...+.|+|-  |....   ....  ......++..    ....|+|.+++.+
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~-~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~   82 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVG-NNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE   82 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCG-GGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCC-CccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec
Confidence            446688899999999999999765422 234689872  33221   0000  0001112221    2246999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+.+
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999997653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=9.6e-06  Score=60.65  Aligned_cols=82  Identities=16%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc------ccCCccC--CCeeEec----CCeEEEeec
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN------MDLNELE--TPNINID----GGLLEITNA  149 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~------~~~~~~~--~~~~~~~----~~~l~i~~~  149 (626)
                      +.+.|..+.+.+|++|+|.|........ ..+.|+|  .|.....      .......  ..+....    ...|.|.++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTT-YYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS   81 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSS-CEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcC-ccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence            3456788899999999999986654332 2468987  2322210      0000000  1111111    237999999


Q ss_pred             CCCCCEeEEEEEEeCCC
Q psy12061        150 SFADAGEYECVVKSTVG  166 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~~g  166 (626)
                      +.+|+|.|.|.+....+
T Consensus        82 ~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          82 QVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             CGGGCEEEEEEEECSBT
T ss_pred             ccccCCCceEeCCCCCC
Confidence            99999999998766544

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.94  E-value=1.4e-05  Score=58.46  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec---ccc--CCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG---NMD--LNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~---~~~--~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +++.|..+.+.+|++++|.|........  .+.|++-  |+...   ...  .......++..    ....|.|.+++.+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~--~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   80 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIET--WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFD   80 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCC--cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEcccccc
Confidence            3456889999999999999998765443  3579863  32211   000  00001112222    2247999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        81 Dsa~YyCa~~~   91 (106)
T d1op3k1          81 DFATYHCQHYA   91 (106)
T ss_dssp             GCSEEEEEEEC
T ss_pred             CCCcEeeeeCC
Confidence            99999997654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.94  E-value=1e-05  Score=60.59  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CCCceEEEEeeeCCCC--CCeeEEEe--CCEE---c---c----------CCCcEEEccCC-----cEEEccCCCCCCEE
Q psy12061          3 GEGGNVTIFCNPEAAP--KPKFVWKK--DGNI---I---G----------SGGRRKIFENG-----NLLISPVSRDDSGI   57 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~---i---~----------~~~~~~~~~~g-----~L~i~~v~~~d~G~   57 (626)
                      .+|++|+|.|.+.+..  ...+.|||  .|..   |   .          ..+|..+..+.     .|.|.+++.+|+|.
T Consensus        14 ~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~   93 (120)
T d1ypzf1          14 PRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAI   93 (120)
T ss_dssp             ETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSE
T ss_pred             cCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccccee
Confidence            4799999999987653  35799998  2221   1   0          12344444322     49999999999999


Q ss_pred             EEEEEEcC
Q psy12061         58 YSCTATNV   65 (626)
Q Consensus        58 Y~C~a~n~   65 (626)
                      |.|.+...
T Consensus        94 YyCA~~~~  101 (120)
T d1ypzf1          94 YYCSYGEG  101 (120)
T ss_dssp             EEEEECCT
T ss_pred             EEEEEcCC
Confidence            99988643

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.93  E-value=1.4e-05  Score=58.50  Aligned_cols=63  Identities=24%  Similarity=0.410  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      |.+|++++|+|.++|...  -.+.|+|  .|+.      |..           .+|+.+..+.     .|+|.+++.+|+
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDT   91 (122)
T d1bz7b1          12 VQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDT   91 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCc
Confidence            578999999999998744  3688987  2221      111           2566666543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (122)
T d1bz7b1          92 AIYYCTRGG  100 (122)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeecCC
Confidence            999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.93  E-value=7.7e-06  Score=59.47  Aligned_cols=63  Identities=25%  Similarity=0.470  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|....  .+.|+|  .|+.      |. .          .+|+.+..|.     .|.|.+++.+|+
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDT   91 (119)
T d1rz7h1          12 KKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDT   91 (119)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccc
Confidence            4789999999999987443  788987  2221      11 1          2577776543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (119)
T d1rz7h1          92 AVYYCAADP  100 (119)
T ss_dssp             EEEEEEECT
T ss_pred             eEEEEeecC
Confidence            999997653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.93  E-value=1.1e-05  Score=60.59  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEEcc------------CCCcEEEccC-----CcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNIIG------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~i~------------~~~~~~~~~~-----g~L~i~~v~~~d~G~Y~C   60 (626)
                      |.+|++++|+|.+++..  ...+.|||  -|..+.            ..+|+....+     -.|.|.+++.+|+|.|.|
T Consensus        13 v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyC   92 (120)
T d1hxma1          13 VSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYC   92 (120)
T ss_dssp             EETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeec
Confidence            56899999999998653  35799998  222110            1245544322     159999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .....
T Consensus        93 A~~~~   97 (120)
T d1hxma1          93 ACDTL   97 (120)
T ss_dssp             EEECC
T ss_pred             CcccC
Confidence            87654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.93  E-value=2.4e-05  Score=58.47  Aligned_cols=82  Identities=16%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec----c--ccC--CccCCCeeEe----cC--CeEEEe
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG----N--MDL--NELETPNINI----DG--GLLEIT  147 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~----~--~~~--~~~~~~~~~~----~~--~~l~i~  147 (626)
                      +.+.|..+.+.+|++++|.|.....-. ...+.|+|  .|....    .  ...  ......|+..    ..  ..|+|.
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~-~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYS-NPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSS-SCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCcc-CCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            345678889999999999998865422 23568986  222221    0  000  0001123322    11  268999


Q ss_pred             ecCCCCCEeEEEEEEeCCC
Q psy12061        148 NASFADAGEYECVVKSTVG  166 (626)
Q Consensus       148 ~~~~~d~g~Y~C~a~n~~g  166 (626)
                      +++.+|+|.|.|.+....+
T Consensus        82 ~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             SCCGGGCEEEEEEEECTTT
T ss_pred             CccccccccceeeEecCCC
Confidence            9999999999998765443

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.92  E-value=8.1e-06  Score=58.94  Aligned_cols=63  Identities=17%  Similarity=0.337  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +++|++++|+|.++|...-  .+.|+|  .|+.+      ..          .+|+.+..|.     .|.|.+++.+|++
T Consensus        12 vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTA   91 (116)
T d1a2yb_          12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccce
Confidence            5789999999999987443  688987  23321      11          2466666543     3999999999999


Q ss_pred             EEEEEEEc
Q psy12061         57 IYSCTATN   64 (626)
Q Consensus        57 ~Y~C~a~n   64 (626)
                      .|.|.-..
T Consensus        92 vYYCAr~~   99 (116)
T d1a2yb_          92 RYYCARER   99 (116)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEeC
Confidence            99998643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=2.6e-05  Score=57.96  Aligned_cols=63  Identities=14%  Similarity=0.346  Sum_probs=43.2

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc---------------CCCcEEEccC----CcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG---------------SGGRRKIFEN----GNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~---------------~~~~~~~~~~----g~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|..... ...+.|||  .|..+.               ...+......    .+|.|.+++.+|+|.|.|
T Consensus        12 ~~~G~~v~l~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   90 (113)
T d1j8he1          12 KRTGEKVFLECVQDMD-HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLC   90 (113)
T ss_dssp             EETTCCEEECEEESSC-CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEcCC-ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEe
Confidence            4689999999987433 46899998  222110               1123333221    159999999999999999


Q ss_pred             EEEcC
Q psy12061         61 TATNV   65 (626)
Q Consensus        61 ~a~n~   65 (626)
                      .+...
T Consensus        91 a~~~~   95 (113)
T d1j8he1          91 ASSST   95 (113)
T ss_dssp             EEECT
T ss_pred             eEccC
Confidence            98754

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.92  E-value=1.7e-05  Score=57.60  Aligned_cols=64  Identities=22%  Similarity=0.430  Sum_probs=46.7

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------cC-------------CCcEEEccCC-----cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------GS-------------GGRRKIFENG-----NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~~-------------~~~~~~~~~g-----~L~i~~v~~~   53 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.+      ..             .+|+.+..+.     .|.|.+++.+
T Consensus        12 vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~e   91 (120)
T d1dlfh_          12 VQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAE   91 (120)
T ss_dssp             ECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCC
Confidence            578999999999998643  4788997  33321      10             1466676543     3999999999


Q ss_pred             CCEEEEEEEEcC
Q psy12061         54 DSGIYSCTATNV   65 (626)
Q Consensus        54 d~G~Y~C~a~n~   65 (626)
                      |++.|.|.....
T Consensus        92 DtAvYYCA~~~~  103 (120)
T d1dlfh_          92 DTGIYYCTGIYY  103 (120)
T ss_dssp             GCEEEEEEEEBT
T ss_pred             CceEEEeeEecC
Confidence            999999976543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.91  E-value=1.4e-05  Score=58.00  Aligned_cols=62  Identities=18%  Similarity=0.383  Sum_probs=45.5

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|....  .+.|+|  .|+.      |..           .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDT   91 (119)
T d1eapb1          12 VKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDS   91 (119)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcc
Confidence            4789999999999987443  688997  2221      221           2466665543     399999999999


Q ss_pred             EEEEEEEE
Q psy12061         56 GIYSCTAT   63 (626)
Q Consensus        56 G~Y~C~a~   63 (626)
                      +.|.|...
T Consensus        92 AvYYCAr~   99 (119)
T d1eapb1          92 AVYFCKRS   99 (119)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEe
Confidence            99999653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.6e-06  Score=59.63  Aligned_cols=63  Identities=16%  Similarity=0.259  Sum_probs=43.6

Q ss_pred             CCCceEEEEeeeCCC-CCC-eeEEEeCCEEccCC--CcEEEccCCc---EEEccCCCCCCEEEEEEEEcC
Q psy12061          3 GEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG--GRRKIFENGN---LLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~i~~~--~~~~~~~~g~---L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      ..|+.++|.|.+.|. |.. .|.|.+||.++...  .......+|+   ...-.+..+|.+.|+|.+...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            468999999999997 554 99999999998642  2223334453   222223456777999999765

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.91  E-value=7.6e-06  Score=60.89  Aligned_cols=76  Identities=24%  Similarity=0.468  Sum_probs=48.3

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEcc---------------CCCcEEEcc--C--CcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG---------------SGGRRKIFE--N--GNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i~---------------~~~~~~~~~--~--g~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++|+|.|..... ...+.|||  .|..+.               ...|+....  +  .+|.|.+++.+|+|.|.|
T Consensus        13 ~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   91 (113)
T d1nfdb1          13 KEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFC   91 (113)
T ss_dssp             EETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECE
T ss_pred             EeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEE
Confidence            4689999999997543 45899998  222110               012222211  1  159999999999999999


Q ss_pred             EEEcCCCCce---eeEEEEEE
Q psy12061         61 TATNVHGMDE---SKGRLIVL   78 (626)
Q Consensus        61 ~a~n~~g~~~---~~~~l~v~   78 (626)
                      .+....+...   ....|+|.
T Consensus        92 a~~~~~~~~~~FG~GT~LtV~  112 (113)
T d1nfdb1          92 ASSLRWGDEQYFGPGTRLTVL  112 (113)
T ss_dssp             EEESSSCSCCEECCCEEEEEE
T ss_pred             EeecCCCCccEECCCeEEEEE
Confidence            8875443322   23556653

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.91  E-value=1.1e-05  Score=58.56  Aligned_cols=62  Identities=23%  Similarity=0.444  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|+.+..|.     .|.|.+++.+|+
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDt   91 (121)
T d2p49b1          12 VQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDT   91 (121)
T ss_dssp             EETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccce
Confidence            578999999999998633  4788987  2322      111           2477777653     399999999999


Q ss_pred             EEEEEEEE
Q psy12061         56 GIYSCTAT   63 (626)
Q Consensus        56 G~Y~C~a~   63 (626)
                      +.|.|...
T Consensus        92 AvYYCAr~   99 (121)
T d2p49b1          92 ATYYCAAG   99 (121)
T ss_dssp             EEEEEEES
T ss_pred             eEEeeecc
Confidence            99999864

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.90  E-value=1.5e-05  Score=59.50  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec------cccCCccCCCeeEe------cCCeEEEeec
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG------NMDLNELETPNINI------DGGLLEITNA  149 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~------~~~~~~~~~~~~~~------~~~~l~i~~~  149 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|+|  .|....      ..........+...      ....|.|.++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~--~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPP--YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSA   80 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSC
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCce--eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccc
Confidence            3456788999999999999998765433  468987  232211      00000000111111      1236999999


Q ss_pred             CCCCCEeEEEEEEeC
Q psy12061        150 SFADAGEYECVVKST  164 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n~  164 (626)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          81 HMSDAAEYFCAVSES   95 (115)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             cccCCccceeeecCC
Confidence            999999999998754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.9e-05  Score=50.40  Aligned_cols=56  Identities=18%  Similarity=0.404  Sum_probs=39.5

Q ss_pred             CCceEEEEeeeCCCCC--CeeEEEeCCEEccCCCcEEEccCCcEEEccCCCCCCEEEEEEEE
Q psy12061          4 EGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT   63 (626)
Q Consensus         4 ~G~~~~l~C~~~g~p~--p~i~W~~~~~~i~~~~~~~~~~~g~L~i~~v~~~d~G~Y~C~a~   63 (626)
                      .|..++|+|.....+.  -.-.|.|+|+.|..+..-.  ..-...|..  .+|+|.|.|+-.
T Consensus        11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~--~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG--QKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC--SEEEEEECG--GGCCEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC--CceEEEEec--CCCCceEEEEEc
Confidence            4788999999977644  3789999999997431100  001256654  789999999965

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.90  E-value=1e-05  Score=59.90  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec---cc--cCCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG---NM--DLNELETPNINI----DGGLLEITNASFAD  153 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~---~~--~~~~~~~~~~~~----~~~~l~i~~~~~~d  153 (626)
                      .+| +.+.+.+|++++|.|...+.....-.+.|++-  +....   ..  ........++..    ....|.|.+++.+|
T Consensus         5 tQp-~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1rzfl1           5 TQP-PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGD   83 (111)
T ss_dssp             BCC-SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeC-cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecccc
Confidence            444 47999999999999998765432334689862  22221   00  000011122221    22589999999999


Q ss_pred             CEeEEEEEEeC
Q psy12061        154 AGEYECVVKST  164 (626)
Q Consensus       154 ~g~Y~C~a~n~  164 (626)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (111)
T d1rzfl1          84 EADYYCGTWDS   94 (111)
T ss_dssp             CSEEEEEEEET
T ss_pred             CcceEEeecCC
Confidence            99999987654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.90  E-value=2.1e-05  Score=59.23  Aligned_cols=80  Identities=19%  Similarity=0.256  Sum_probs=52.0

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc------c-c-C--CccCCCeeEec------CCeEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN------M-D-L--NELETPNINID------GGLLE  145 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~------~-~-~--~~~~~~~~~~~------~~~l~  145 (626)
                      +.+|+..+++.+|++++|.|.+.+.......+.|+|  .|+.+..      . . .  ......|+.+.      ...|+
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            345667788999999999999987654444578987  2322210      0 0 0  00112344331      13599


Q ss_pred             EeecCCCCCEeEEEEEEe
Q psy12061        146 ITNASFADAGEYECVVKS  163 (626)
Q Consensus       146 i~~~~~~d~g~Y~C~a~n  163 (626)
                      |.+++.+|+|.|.|....
T Consensus        84 i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ccccccccCcEEEEeeeC
Confidence            999999999999998754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.90  E-value=3.2e-05  Score=57.54  Aligned_cols=91  Identities=23%  Similarity=0.361  Sum_probs=55.1

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc----c---cCCccCCCeeEe----cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN----M---DLNELETPNINI----DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~----~---~~~~~~~~~~~~----~~~~l~i~~~~  150 (626)
                      +.+.|..+.+.+|++++|.|...+.-.   .+.|++  .|.....    .   ........++..    ....|.|.+++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~~~---~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   79 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSVFS---SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQ   79 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSCCS---CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCCCc---eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCC
Confidence            455678899999999999999776432   468987  2322110    0   000000111111    12479999999


Q ss_pred             CCCCEeEEEEEEeCCCce--EEEEEEEEe
Q psy12061        151 FADAGEYECVVKSTVGKI--STKTTVIVE  177 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~g~~--~~~~~l~v~  177 (626)
                      .+|+|.|.|.+....+..  -....|.|.
T Consensus        80 ~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          80 PGDTGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             GGGCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             ccceeeEcccccCCCCCcEECCCEEEEEe
Confidence            999999999877544432  223455554

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.89  E-value=1.3e-05  Score=58.94  Aligned_cols=63  Identities=22%  Similarity=0.458  Sum_probs=45.8

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|+|  .|+.      |. .          .+|+.+..+.     .|+|.+++.+|+
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDT   90 (126)
T d1rjca1          11 VQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDT   90 (126)
T ss_dssp             ECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccC
Confidence            578999999999998643  3789997  3322      21 1          2467776543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        91 AvYYCAr~~   99 (126)
T d1rjca1          91 AMYYCAADT   99 (126)
T ss_dssp             EEEEEEECC
T ss_pred             ceeEEEeec
Confidence            999998654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.89  E-value=1.4e-05  Score=57.97  Aligned_cols=63  Identities=17%  Similarity=0.373  Sum_probs=47.1

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|....   .+.|+|  .|+.+      ..          .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDT   91 (119)
T d1ncwh1          12 VKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDT   91 (119)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCc
Confidence            5789999999999997553   478987  44322      11          2577776543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (119)
T d1ncwh1          92 ATYYCAGLL  100 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEeEec
Confidence            999997654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.89  E-value=3.2e-05  Score=55.99  Aligned_cols=63  Identities=21%  Similarity=0.403  Sum_probs=45.6

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|.|  .|+.      |..           .+|..+..+.     .|.|.+++.+|+
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDt   91 (118)
T d1ct8b1          12 VKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDS   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcc
Confidence            578999999999998643  3788887  3321      211           2466665543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (118)
T d1ct8b1          92 AIYYCARYR  100 (118)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeeec
Confidence            999997643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=1.3e-05  Score=57.96  Aligned_cols=61  Identities=21%  Similarity=0.426  Sum_probs=45.2

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...-  .+.|+|  .|+.      |..           .+|+.+..|.     .|.|.+++.+|+
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDT   91 (118)
T d2jelh1          12 VRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDS   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcc
Confidence            4689999999999987543  788987  3321      211           2566666543     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (118)
T d2jelh1          92 AIYYCAR   98 (118)
T ss_dssp             EEEEEEE
T ss_pred             eeeeEEE
Confidence            9999954

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.87  E-value=1.6e-05  Score=59.04  Aligned_cols=65  Identities=17%  Similarity=0.359  Sum_probs=43.9

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEe--CCEEc------c---------CCCcEEEcc----CCcEEEccCCCCCCEEEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------G---------SGGRRKIFE----NGNLLISPVSRDDSGIYSC   60 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~i------~---------~~~~~~~~~----~g~L~i~~v~~~d~G~Y~C   60 (626)
                      +.+|++++|.|..... ...+.|||  .|..+      .         ...+.....    ..+|.|.+++.+|+|.|.|
T Consensus        10 ~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   88 (112)
T d2cdeb1          10 IGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLC   88 (112)
T ss_dssp             EETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEE
T ss_pred             ECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEE
Confidence            4689999999997543 45899998  22211      0         011222211    1259999999999999999


Q ss_pred             EEEcCCC
Q psy12061         61 TATNVHG   67 (626)
Q Consensus        61 ~a~n~~g   67 (626)
                      .+....+
T Consensus        89 A~~~~~~   95 (112)
T d2cdeb1          89 ASSENIG   95 (112)
T ss_dssp             EEECSSS
T ss_pred             EEecCCC
Confidence            9886544

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.87  E-value=2.9e-05  Score=57.19  Aligned_cols=78  Identities=19%  Similarity=0.402  Sum_probs=52.7

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|+|  .|+.      |..           .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 vkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDT   91 (135)
T d1ieha_          12 VQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDT   91 (135)
T ss_dssp             ECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSC
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccc
Confidence            578999999999998643  3688987  2321      211           2577776654     399999999999


Q ss_pred             EEEEEEEEcCCCCc--eeeEEEEEEe
Q psy12061         56 GIYSCTATNVHGMD--ESKGRLIVLH   79 (626)
Q Consensus        56 G~Y~C~a~n~~g~~--~~~~~l~v~~   79 (626)
                      +.|.|......+-+  .....|+|..
T Consensus        92 AvYYCAr~~~~~~d~WGqGT~VTVsS  117 (135)
T d1ieha_          92 AVYYCAKYSGGALDAWGQGTQVTVSS  117 (135)
T ss_dssp             EEEEEEEBSSSSBCCCSCCEEEEECS
T ss_pred             eeeEEEEecCCccceeCCCEEEEEEC
Confidence            99999765432211  2235666633

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.87  E-value=3.9e-05  Score=57.29  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=48.3

Q ss_pred             eCCCceEEecCCcEEEEEEecccCCcceeEEEeeC-----CEEec------cccC----CccCCCeeEe------cCCeE
Q psy12061         86 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-----GVRIG------NMDL----NELETPNINI------DGGLL  144 (626)
Q Consensus        86 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-----~~~~~------~~~~----~~~~~~~~~~------~~~~l  144 (626)
                      +.|..+.+.+|++++|.|.+.+.... ..+.|++-     ++.+.      ....    ......+...      ....|
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~-~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKL-TSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCS-SEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCC-CceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            45788899999999999998864332 24578863     22221      0000    0001122211      23479


Q ss_pred             EEeecCCCCCEeEEEEEE
Q psy12061        145 EITNASFADAGEYECVVK  162 (626)
Q Consensus       145 ~i~~~~~~d~g~Y~C~a~  162 (626)
                      +|.+++.+|+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999765

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.86  E-value=9.4e-06  Score=60.16  Aligned_cols=63  Identities=21%  Similarity=0.503  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEeC--CEE---c---c----------------CCCcEEEccCC-----cEEEccC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKKD--GNI---I---G----------------SGGRRKIFENG-----NLLISPV   50 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~~--~~~---i---~----------------~~~~~~~~~~g-----~L~i~~v   50 (626)
                      +++|++++|.|.++|...  -.+.|+|-  |+.   |   .                ..+|+.+..+.     .|+|.++
T Consensus        12 vkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l   91 (127)
T d1i3ua_          12 VQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSL   91 (127)
T ss_dssp             CCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecc
Confidence            578999999999998643  37889972  221   1   0                11467666543     3999999


Q ss_pred             CCCCCEEEEEEEEc
Q psy12061         51 SRDDSGIYSCTATN   64 (626)
Q Consensus        51 ~~~d~G~Y~C~a~n   64 (626)
                      +.+|++.|.|....
T Consensus        92 ~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          92 KPEDTAVYYCAAKT  105 (127)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             cccceeEEEEEEEe
Confidence            99999999998764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.86  E-value=1.6e-05  Score=59.50  Aligned_cols=80  Identities=18%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec------ccc---CCccCCCeeEe--c----CCeEEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG------NMD---LNELETPNINI--D----GGLLEI  146 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~------~~~---~~~~~~~~~~~--~----~~~l~i  146 (626)
                      +.++|..+.+.+|++++|.|.+.+.......+.|++  .|+.+.      ...   .......++..  .    ...|.|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            445677888999999999999876543333468987  232211      000   00011223332  1    135999


Q ss_pred             eecCCCCCEeEEEEEEe
Q psy12061        147 TNASFADAGEYECVVKS  163 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n  163 (626)
                      .+++.+|+|.|.|....
T Consensus        84 ~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CSCCGGGCSEEEEEECC
T ss_pred             cccccccceeEEEEEcC
Confidence            99999999999997653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.86  E-value=1.3e-05  Score=58.53  Aligned_cols=64  Identities=19%  Similarity=0.437  Sum_probs=46.7

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|+.+..|.     .|.|.+++.+|+
T Consensus        12 vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDt   91 (121)
T d1ol0a_          12 VQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDT   91 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccc
Confidence            478999999999998643  3678987  2332      211           2577776653     399999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      +.|.|.....
T Consensus        92 AvYYCAr~~~  101 (121)
T d1ol0a_          92 AVYYCAREPR  101 (121)
T ss_dssp             EEEEEEECCS
T ss_pred             eEEEEEEecC
Confidence            9999976543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.85  E-value=1.3e-05  Score=58.94  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec----cc-cCCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG----NM-DLNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~----~~-~~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++  .|+...    .. ........++..    ....|.|.+++.+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~--~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYS--YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE   81 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCc--ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc
Confidence            3455788899999999999998765443  358997  233211    00 000001122222    2347999999999


Q ss_pred             CCEeEEEEEE
Q psy12061        153 DAGEYECVVK  162 (626)
Q Consensus       153 d~g~Y~C~a~  162 (626)
                      |+|.|.|.+.
T Consensus        82 DSa~YyCA~~   91 (109)
T d1mqkl_          82 DFGSYYCQHH   91 (109)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCeeEEEeee
Confidence            9999999775

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=1.1e-05  Score=58.05  Aligned_cols=61  Identities=21%  Similarity=0.406  Sum_probs=45.1

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|....  -+.|.|  .|+.      |. .          .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDt   91 (116)
T d1mjuh1          12 VKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDS   91 (116)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCc
Confidence            5789999999999987443  678887  2321      21 1          2477775443     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (116)
T d1mjuh1          92 AVYYCAN   98 (116)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEcc
Confidence            9999965

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.4e-05  Score=55.71  Aligned_cols=62  Identities=26%  Similarity=0.424  Sum_probs=44.0

Q ss_pred             CCCCceEEEEeeeCCCCCCeeEEEeCCEEccCCCcEEEcc-CCcEEEccCCCCCCEEEEEEEEcC
Q psy12061          2 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~i~~~~~~~~~~-~g~L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      |..|++|+|.|.......-.+.|+|+|......  ...-. .....|.+++.+|+|.|+|.-...
T Consensus        16 V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          16 LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             ECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             cCCCCeEEEEEeCCCCCceEEEEEECCcccceE--EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            568999999998643344478999999643221  11111 125889999999999999987644

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.85  E-value=1.7e-05  Score=59.03  Aligned_cols=79  Identities=22%  Similarity=0.374  Sum_probs=49.2

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccc-----cCCccCCC--eeE---ecCCeEEEeecCCC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNM-----DLNELETP--NIN---IDGGLLEITNASFA  152 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~-----~~~~~~~~--~~~---~~~~~l~i~~~~~~  152 (626)
                      .+.|..+.+.+|++++|.|.......   .+.|+|  .+.....-     ........  +..   .....|.|.+++.+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~~~---~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTTMR---SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSCCS---EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             EECCCEEEEcCCCCEEEEEEEecCCc---cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            45678899999999999999875432   468987  22221100     00000000  000   01237999999999


Q ss_pred             CCEeEEEEEEeCCC
Q psy12061        153 DAGEYECVVKSTVG  166 (626)
Q Consensus       153 d~g~Y~C~a~n~~g  166 (626)
                      |+|.|.|.+....+
T Consensus        82 Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          82 DSGTYFCAAEASSG   95 (113)
T ss_dssp             GCEEEEEEEECSSS
T ss_pred             HCEEEEEEecCCCC
Confidence            99999998875443

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.84  E-value=2.6e-05  Score=57.53  Aligned_cols=79  Identities=18%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCC---cceeEEEee--CCEEeccc-----cCCccCCCeeEe----cCCeEEEeec
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEEL---LDVAYIWTH--NGVRIGNM-----DLNELETPNINI----DGGLLEITNA  149 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~  149 (626)
                      +++.|..+.+.+|++++|.|.......   ....+.|++  .|.....-     ....-...++..    .+..|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            345578899999999999998764321   112367986  33332210     000000122221    2237999999


Q ss_pred             CCCCCEeEEEEEE
Q psy12061        150 SFADAGEYECVVK  162 (626)
Q Consensus       150 ~~~d~g~Y~C~a~  162 (626)
                      +.+|+|.|.|...
T Consensus        84 ~~eDsAvYYC~~~   96 (112)
T d1ncwl1          84 EAEDLGVYYCWQG   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcCEeEEEEcC
Confidence            9999999999654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.84  E-value=1.6e-05  Score=58.82  Aligned_cols=78  Identities=15%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCC---cceeEEEee--CCEEecc--ccC---CccCCCeeEe----cCCeEEEeec
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEEL---LDVAYIWTH--NGVRIGN--MDL---NELETPNINI----DGGLLEITNA  149 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~---p~~~i~W~~--~~~~~~~--~~~---~~~~~~~~~~----~~~~l~i~~~  149 (626)
                      ++++|..+.+.+|++++|.|...+...   ....+.|++  .|.....  ...   ......++..    ....|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            446688899999999999998766321   123468986  3333211  000   0000112222    2236999999


Q ss_pred             CCCCCEeEEEEE
Q psy12061        150 SFADAGEYECVV  161 (626)
Q Consensus       150 ~~~d~g~Y~C~a  161 (626)
                      +.+|++.|.|..
T Consensus        84 ~~~DsAvYyCa~   95 (112)
T d1mjul1          84 EAEDVGVYYCLQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCCceEEEEe
Confidence            999999999954

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=1.8e-05  Score=57.96  Aligned_cols=63  Identities=17%  Similarity=0.426  Sum_probs=45.7

Q ss_pred             CCCCceEEEEeeeCCCC--CCeeEEEe--CCEEc------cC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAP--KPKFVWKK--DGNII------GS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p--~p~i~W~~--~~~~i------~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|..  .-.+.|+|  .|+.+      ..           .+|+.+..+.     .|+|.+++.+|+
T Consensus        12 ~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDt   91 (121)
T d1j05b_          12 VEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDT   91 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcc
Confidence            57899999999998863  33788987  33321      11           2466665432     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (121)
T d1j05b_          92 AVYYCAPFG  100 (121)
T ss_dssp             EEEEEEEEB
T ss_pred             eEEEeEeec
Confidence            999998654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.84  E-value=1.8e-05  Score=57.80  Aligned_cols=63  Identities=17%  Similarity=0.337  Sum_probs=45.9

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEe--CCEE------ccC----------CCcEEEccCC-----cEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKK--DGNI------IGS----------GGRRKIFENG-----NLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~--~~~~------i~~----------~~~~~~~~~g-----~L~i~~v~~~d   54 (626)
                      +++|++++|+|.++|...    --+.|+|  .|+.      |..          .+|+.+..|.     .|.|.+++.+|
T Consensus        12 vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eD   91 (120)
T d1ai1h1          12 IKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNED   91 (120)
T ss_dssp             ECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccc
Confidence            578999999999998632    2578987  3332      221          1577776543     39999999999


Q ss_pred             CEEEEEEEEc
Q psy12061         55 SGIYSCTATN   64 (626)
Q Consensus        55 ~G~Y~C~a~n   64 (626)
                      ++.|.|....
T Consensus        92 tAvYYCAr~~  101 (120)
T d1ai1h1          92 TAMYYCSREN  101 (120)
T ss_dssp             CEEEEEEEEE
T ss_pred             eeEEEEEecC
Confidence            9999997543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.83  E-value=1.2e-05  Score=58.68  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccc-----cCCccCCCeeEe----cCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNM-----DLNELETPNINI----DGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|+|  .|.....-     ........++..    ....|.|.+++.+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~--~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDD--DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE   81 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCc--cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccc
Confidence            3456788899999999999988765443  358986  33332210     000111222222    2347999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (106)
T d1i8ka_          82 DVGDYYCLQSF   92 (106)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEeEecCc
Confidence            99999997654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.83  E-value=2.1e-05  Score=58.98  Aligned_cols=80  Identities=15%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc-------cc---CCccCCCeeEe---c--CCeEEE
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN-------MD---LNELETPNINI---D--GGLLEI  146 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~-------~~---~~~~~~~~~~~---~--~~~l~i  146 (626)
                      +.+.|..+.+.+|++++|.|...+....  .+.|+|  .|+.+..       ..   .......++..   .  ...|+|
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i   81 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIH--TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTV   81 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCS--EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCccc--EEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccc
Confidence            4456778899999999999998765443  468997  3332220       00   00111223322   1  236999


Q ss_pred             eecCCCCCEeEEEEEEeCC
Q psy12061        147 TNASFADAGEYECVVKSTV  165 (626)
Q Consensus       147 ~~~~~~d~g~Y~C~a~n~~  165 (626)
                      .+++.+|+|.|.|.+....
T Consensus        82 ~~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          82 TSAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CSCCGGGCEEEEEEEECSS
T ss_pred             cccccccCceEEEEEecCC
Confidence            9999999999999886543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=2.7e-05  Score=57.41  Aligned_cols=64  Identities=20%  Similarity=0.396  Sum_probs=47.1

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|+|  .|+.      |..           .+|+.+..+.     .|.|.+++.+|+
T Consensus        11 ~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDt   90 (130)
T d1rhhb1          11 KKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDT   90 (130)
T ss_dssp             ECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCc
Confidence            578999999999998643  3788987  3332      111           2577776543     399999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      +.|.|.....
T Consensus        91 AvYyCAr~~~  100 (130)
T d1rhhb1          91 AVYYCARDFG  100 (130)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEeecC
Confidence            9999987543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.83  E-value=1.6e-05  Score=58.20  Aligned_cols=78  Identities=17%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec---ccc--CCccCCCeeEe----cCCeEEEeecCCCC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG---NMD--LNELETPNINI----DGGLLEITNASFAD  153 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~---~~~--~~~~~~~~~~~----~~~~l~i~~~~~~d  153 (626)
                      .+| +.+.+.+|++++|.|........  .+.|++  .|....   ...  .......+...    ....|.|.+++.+|
T Consensus         5 tQp-~sl~~~~G~svtl~C~~~~~~~~--~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   81 (109)
T d1w72l1           5 TQP-PSVSVAPGQTARITCGGNNIGSR--SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGD   81 (109)
T ss_dssp             BCC-SEEEECTTSCEEEEEECTTGGGS--CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeC-CeEEECCCCCEEEEEEcCCCCCc--ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCC
Confidence            444 47899999999999997654332  458986  233221   110  00001122221    23478999999999


Q ss_pred             CEeEEEEEEeCC
Q psy12061        154 AGEYECVVKSTV  165 (626)
Q Consensus       154 ~g~Y~C~a~n~~  165 (626)
                      +|.|.|.+....
T Consensus        82 savYyCA~~~~~   93 (109)
T d1w72l1          82 EADYYCQVWDSR   93 (109)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CEEEEEEecCCC
Confidence            999999876543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.82  E-value=1.7e-05  Score=57.45  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=44.2

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  --+.|+|  .|+.+      .           ..+|..+..+.     .|.|.+++.+|+
T Consensus        12 ~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDt   91 (117)
T d1mfah1          12 ARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDS   91 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcc
Confidence            478999999999998633  3678887  33322      1           12466665443     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (117)
T d1mfah1          92 AVYYCTR   98 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9999965

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.82  E-value=4e-05  Score=55.37  Aligned_cols=64  Identities=22%  Similarity=0.399  Sum_probs=46.6

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.+      ..          .+|+.+..+.     .|.|.+++.+|++
T Consensus        12 vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA   91 (118)
T d1lo4h1          12 VKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTA   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcce
Confidence            578999999999998744  3788997  23221      11          2466666543     3999999999999


Q ss_pred             EEEEEEEcC
Q psy12061         57 IYSCTATNV   65 (626)
Q Consensus        57 ~Y~C~a~n~   65 (626)
                      .|.|.-...
T Consensus        92 ~YyCAr~~~  100 (118)
T d1lo4h1          92 IYYCARGTS  100 (118)
T ss_dssp             EEEEEEEET
T ss_pred             EEEecccCC
Confidence            999976433

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=1.9e-05  Score=56.85  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             CCCceEEEEeeeCCC-CC-CeeEEEeCCEEccCCCcEEE--ccCCc---EEEccCCCCCCEEEEEEEEcC
Q psy12061          3 GEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGRRKI--FENGN---LLISPVSRDDSGIYSCTATNV   65 (626)
Q Consensus         3 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~i~~~~~~~~--~~~g~---L~i~~v~~~d~G~Y~C~a~n~   65 (626)
                      ..|+.++|.|.+.|. |. ..|+|++||.++........  ..+|+   ...-.+..++.+.|+|.+...
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            357889999999996 54 49999999999865432222  23442   112223456667899999754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=5e-06  Score=60.24  Aligned_cols=64  Identities=19%  Similarity=0.300  Sum_probs=46.1

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------cCC----------CcEEEccCC-----cEEEccCCCCCCE
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------GSG----------GRRKIFENG-----NLLISPVSRDDSG   56 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~~~----------~~~~~~~~g-----~L~i~~v~~~d~G   56 (626)
                      |++|++++|+|.++|...  -.+.|+|  .|+.+      ..+          +|+.+..|.     .|.|.+++.+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTA   91 (116)
T d1fn4b1          12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTG   91 (116)
T ss_dssp             CCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCE
T ss_pred             ECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCE
Confidence            578999999999998644  3788997  33322      221          444554433     3999999999999


Q ss_pred             EEEEEEEcC
Q psy12061         57 IYSCTATNV   65 (626)
Q Consensus        57 ~Y~C~a~n~   65 (626)
                      .|.|.....
T Consensus        92 vYyCAr~~~  100 (116)
T d1fn4b1          92 TYYCTRDLY  100 (116)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEeecC
Confidence            999976544

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=3.1e-05  Score=56.76  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCC-cceeEEEee--CCEEeccc-----cCCccCCCeeEe----cCCeEEEeecCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTH--NGVRIGNM-----DLNELETPNINI----DGGLLEITNASF  151 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~  151 (626)
                      +.++| .+.+.+|++++|.|....... ..-.+.|++  .|+....-     ........++..    ....|.|.+++.
T Consensus         4 ~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~   82 (110)
T d1oaql_           4 VTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT   82 (110)
T ss_dssp             EEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG
T ss_pred             EeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc
Confidence            34444 788999999999999875432 222368986  23332210     000001122221    335799999999


Q ss_pred             CCCEeEEEEEEe
Q psy12061        152 ADAGEYECVVKS  163 (626)
Q Consensus       152 ~d~g~Y~C~a~n  163 (626)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (110)
T d1oaql_          83 EDEAIYFCALWY   94 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccEeEEEEccc
Confidence            999999998764

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.82  E-value=1.7e-05  Score=58.26  Aligned_cols=63  Identities=22%  Similarity=0.437  Sum_probs=46.5

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNII------G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...-  .+.|+|  .|+.+      .           -.+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDT   91 (128)
T d2nxyd1          12 KKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDT   91 (128)
T ss_dssp             ECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCc
Confidence            5789999999999997543  578876  22211      1           13677776543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 A~YYCAr~~  100 (128)
T d2nxyd1          92 AVYFCAGVY  100 (128)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEeEEe
Confidence            999999764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.81  E-value=2.9e-05  Score=57.26  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=49.5

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccC-C-cceeEEEeeC--CEEecc---cc--CCccCCCeeEe----cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEE-L-LDVAYIWTHN--GVRIGN---MD--LNELETPNINI----DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p-~-p~~~i~W~~~--~~~~~~---~~--~~~~~~~~~~~----~~~~l~i~~~~  150 (626)
                      +.+.|..+.+.+|++++|.|.....- . ..-.+.|++-  |.....   ..  ...-...++..    ....|+|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            34567888999999999999876421 1 1113689872  332211   00  00001123322    23479999999


Q ss_pred             CCCCEeEEEEEEeC
Q psy12061        151 FADAGEYECVVKST  164 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~  164 (626)
                      .+|++.|.|.+...
T Consensus        84 ~~DsA~YyCa~~~~   97 (111)
T d2gsia1          84 EEDAATYYCSHIRE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             ccCCceEEEEECCC
Confidence            99999999976543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.81  E-value=1.8e-05  Score=57.88  Aligned_cols=63  Identities=21%  Similarity=0.431  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------cc-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IG-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.++|...  -.+.|+|  .|+.      |.           ..+|+.+..+.     .|+|.+++.+|+
T Consensus        12 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDT   91 (125)
T d1op3h1          12 VKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDT   91 (125)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccc
Confidence            468999999999988633  3788987  2222      11           12577776543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (125)
T d1op3h1          92 AIYYCARKG  100 (125)
T ss_dssp             EEEEEEEEC
T ss_pred             eeEeEeecc
Confidence            999998754

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=6e-06  Score=61.70  Aligned_cols=78  Identities=15%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEec---ccc--CCccCCCeeE----ecCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG---NMD--LNELETPNIN----IDGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~---~~~--~~~~~~~~~~----~~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|.....-..  .+.|++-  +....   ...  .......++.    .....|.|.+++.+
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~--~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINN--YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE   81 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcc--eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccC
Confidence            3455778889999999999997764332  4689973  22211   110  0000011221    12247999999999


Q ss_pred             CCEeEEEEEEe
Q psy12061        153 DAGEYECVVKS  163 (626)
Q Consensus       153 d~g~Y~C~a~n  163 (626)
                      |+|.|.|.+..
T Consensus        82 DsavYyCa~~~   92 (119)
T d1f3rb2          82 DVATYFCYQYN   92 (119)
T ss_dssp             GCSEEEEEEES
T ss_pred             CCeEEEeeccC
Confidence            99999997653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.81  E-value=1.9e-05  Score=58.92  Aligned_cols=63  Identities=19%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEe--CCEEc------c----------CCCcEEEccCC-----cEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKK--DGNII------G----------SGGRRKIFENG-----NLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~--~~~~i------~----------~~~~~~~~~~g-----~L~i~~v~~~d   54 (626)
                      |.+|++++|.|.++|...    .-+.|+|  -|+.+      .          ..+|+.+..+.     .|+|.+++.+|
T Consensus        12 vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eD   91 (132)
T d1tjgh1          12 VKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVD   91 (132)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCccc
Confidence            578999999999987532    3588997  22221      1          13576665543     39999999999


Q ss_pred             CEEEEEEEEc
Q psy12061         55 SGIYSCTATN   64 (626)
Q Consensus        55 ~G~Y~C~a~n   64 (626)
                      ++.|.|....
T Consensus        92 tAvYYCAr~~  101 (132)
T d1tjgh1          92 TATYFCAHRR  101 (132)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEEEEec
Confidence            9999998653

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.80  E-value=2.1e-05  Score=57.63  Aligned_cols=63  Identities=19%  Similarity=0.395  Sum_probs=46.3

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +.+|++++|.|.++|...  -.+.|+|  .|+.      |. .          .+|+.+..|.     .|.|.+++.+|+
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDt   91 (126)
T d1dfbh1          12 VQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDM   91 (126)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcc
Confidence            578999999999998743  3688887  2321      21 1          2566666543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 avYYCAr~~  100 (126)
T d1dfbh1          92 ALYYCVKGR  100 (126)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEecc
Confidence            999997654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=2.9e-05  Score=58.21  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=41.1

Q ss_pred             CCCCceEEEEeeeCCCCCC---eeEEEe--CCEEc-------cCC------CcEE--Ec-cC--CcEEEccCCCCCCEEE
Q psy12061          2 AGEGGNVTIFCNPEAAPKP---KFVWKK--DGNII-------GSG------GRRK--IF-EN--GNLLISPVSRDDSGIY   58 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p---~i~W~~--~~~~i-------~~~------~~~~--~~-~~--g~L~i~~v~~~d~G~Y   58 (626)
                      +.+|++|+|.|.....-.+   .+.|+|  .|+..       ...      ++..  .. .+  -+|.|.+++.+|+|.|
T Consensus        11 ~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   90 (117)
T d1dqta_          11 ASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLY   90 (117)
T ss_dssp             CCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeE
Confidence            6789999999998543222   488998  23221       001      1111  00 11  1599999999999999


Q ss_pred             EEEEEc
Q psy12061         59 SCTATN   64 (626)
Q Consensus        59 ~C~a~n   64 (626)
                      .|.+..
T Consensus        91 yCa~~~   96 (117)
T d1dqta_          91 LCKVEL   96 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998864

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.80  E-value=2.5e-05  Score=57.73  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             CCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc--c---cCCccCCCeeEe----cCCeEEEeecCCCCCEe
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN--M---DLNELETPNINI----DGGLLEITNASFADAGE  156 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~--~---~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~  156 (626)
                      |.++.+.+|++++|.|....... ...+.|++  .|.....  .   .-......+...    ....|.|.+++.+|+|.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~-~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISG-NEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCT-TEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCC-CCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            45789999999999999765432 22468987  2322110  0   000001122221    22479999999999999


Q ss_pred             EEEEEEeC
Q psy12061        157 YECVVKST  164 (626)
Q Consensus       157 Y~C~a~n~  164 (626)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (110)
T d2esvd1          84 YYCIVVRS   91 (110)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99988644

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.80  E-value=2.4e-05  Score=57.40  Aligned_cols=65  Identities=20%  Similarity=0.404  Sum_probs=47.4

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEEc------c-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNII------G-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~i------~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|+|.++|...  -.+.|.|  .|+.+      .           -.+|+.+..|.     .|.|.+++.+|+
T Consensus        12 ~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDT   91 (127)
T d2fx7h1          12 KRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDT   91 (127)
T ss_dssp             ECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccc
Confidence            468999999999998643  3688987  33221      1           13577776553     399999999999


Q ss_pred             EEEEEEEEcCC
Q psy12061         56 GIYSCTATNVH   66 (626)
Q Consensus        56 G~Y~C~a~n~~   66 (626)
                      +.|.|......
T Consensus        92 avYYCAR~~~~  102 (127)
T d2fx7h1          92 AVYYCAREGTT  102 (127)
T ss_dssp             EEEEEEEEEES
T ss_pred             eEEEEeecccc
Confidence            99999876443

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.80  E-value=1.8e-05  Score=57.69  Aligned_cols=64  Identities=22%  Similarity=0.455  Sum_probs=47.0

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc---C----------CCcEEEccCC-----cEEEccCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG---S----------GGRRKIFENG-----NLLISPVSRD   53 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~---~----------~~~~~~~~~g-----~L~i~~v~~~   53 (626)
                      |++|++++|.|.++|....  .+.|+|  .|+.      |.   +          .+|+.+..|.     .|+|.+++.+
T Consensus        12 vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   91 (122)
T d1q9rb1          12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAE   91 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccC
Confidence            5789999999999987443  688997  3322      11   1          1566776543     3999999999


Q ss_pred             CCEEEEEEEEcC
Q psy12061         54 DSGIYSCTATNV   65 (626)
Q Consensus        54 d~G~Y~C~a~n~   65 (626)
                      |++.|.|.....
T Consensus        92 DTAvYYCar~~~  103 (122)
T d1q9rb1          92 DSATYYCARDHD  103 (122)
T ss_dssp             GCEEEEEEECCC
T ss_pred             cceEEEEEecCC
Confidence            999999987543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=2.2e-05  Score=57.89  Aligned_cols=63  Identities=16%  Similarity=0.327  Sum_probs=46.0

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------cc-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IG-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |.           ..+|..+..+.     .|.|.+++.+|+
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDt   91 (125)
T d1rihh1          12 AKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDS   91 (125)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccc
Confidence            578999999999998643  3688887  3332      11           12566665543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAR~~  100 (125)
T d1rihh1          92 AVYYCARES  100 (125)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeeeC
Confidence            999998653

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.79  E-value=3.6e-05  Score=56.88  Aligned_cols=64  Identities=25%  Similarity=0.492  Sum_probs=47.1

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc-----------CCCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG-----------SGGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~-----------~~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...-  .+.|+|  .|+.      |.           ..+|..+..+.     .|+|.+++.+|+
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eDt   90 (133)
T d1rzfh1          11 NKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDDT   90 (133)
T ss_dssp             ECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCCC
Confidence            5789999999999987443  688887  2321      11           13677776553     399999999999


Q ss_pred             EEEEEEEEcC
Q psy12061         56 GIYSCTATNV   65 (626)
Q Consensus        56 G~Y~C~a~n~   65 (626)
                      +.|.|.....
T Consensus        91 A~YYCAr~~~  100 (133)
T d1rzfh1          91 AVYYCASNSI  100 (133)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEeeeccC
Confidence            9999976543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.79  E-value=2.2e-05  Score=58.73  Aligned_cols=80  Identities=15%  Similarity=0.250  Sum_probs=49.8

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEeeC--CEEecc------ccCCccCCCeeEe----c--CCeEEEeecC
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN------MDLNELETPNINI----D--GGLLEITNAS  150 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~--~~~~~~------~~~~~~~~~~~~~----~--~~~l~i~~~~  150 (626)
                      .++|..+.+.+|++|+|.|....... ...+.|+|-  |.....      .........++..    .  ...|.|.+++
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDS-SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCS-SCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCC-CCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            45678899999999999998765332 224689972  222110      0000000112221    1  2369999999


Q ss_pred             CCCCEeEEEEEEeCC
Q psy12061        151 FADAGEYECVVKSTV  165 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~  165 (626)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999876443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.79  E-value=1.6e-05  Score=58.30  Aligned_cols=61  Identities=16%  Similarity=0.385  Sum_probs=45.2

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...-  .+.|+|  .|+.      |..           .+|+.+..+.     .|.|.+++.+|+
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eDt   91 (127)
T d1n0xh1          12 KKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADT   91 (127)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCCc
Confidence            5789999999999986443  678887  3322      211           2566776543     399999999999


Q ss_pred             EEEEEEE
Q psy12061         56 GIYSCTA   62 (626)
Q Consensus        56 G~Y~C~a   62 (626)
                      +.|.|.-
T Consensus        92 AvYYCAR   98 (127)
T d1n0xh1          92 AVYYCAR   98 (127)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999964

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.79  E-value=2.9e-05  Score=57.36  Aligned_cols=77  Identities=13%  Similarity=0.214  Sum_probs=48.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEec----c--cc---CCccCCCee----EecCCeEEEee
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIG----N--MD---LNELETPNI----NIDGGLLEITN  148 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~----~--~~---~~~~~~~~~----~~~~~~l~i~~  148 (626)
                      +.+.|..+.+.+|++++|.|..... ..  .+.|+|  .|....    .  ..   .........    ......|+|.+
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~~--~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNN-HN--NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES   80 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC-CS--EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCC-cC--cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence            3456788899999999999987653 22  568997  232221    0  00   000011111    11235788999


Q ss_pred             cCCCCCEeEEEEEEe
Q psy12061        149 ASFADAGEYECVVKS  163 (626)
Q Consensus       149 ~~~~d~g~Y~C~a~n  163 (626)
                      ++.+|+|.|.|.+..
T Consensus        81 ~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          81 ATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHhhCEEEEEeeCC
Confidence            999999999997754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=2.1e-05  Score=57.58  Aligned_cols=62  Identities=21%  Similarity=0.387  Sum_probs=45.5

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEE------cc-C----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNI------IG-S----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~------i~-~----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...-  .+.|+|  .|+.      |. .          .+|+.+..+.     .|.|.+++.+|+
T Consensus        11 ~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDT   90 (126)
T d1lmka1          11 MKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDS   90 (126)
T ss_dssp             ECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcc
Confidence            4789999999999997443  688887  2321      11 1          2666675443     399999999999


Q ss_pred             EEEEEEEE
Q psy12061         56 GIYSCTAT   63 (626)
Q Consensus        56 G~Y~C~a~   63 (626)
                      +.|.|...
T Consensus        91 AvYYCAr~   98 (126)
T d1lmka1          91 AVYYCARG   98 (126)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999753

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.79  E-value=2.2e-05  Score=56.80  Aligned_cols=63  Identities=17%  Similarity=0.413  Sum_probs=46.2

Q ss_pred             CCCCceEEEEeeeCCCCCC--eeEEEe--CCEEc------cC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPKP--KFVWKK--DGNII------GS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~p--~i~W~~--~~~~i------~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|....  .+.|.|  .|+.+      ..           .+|+.+..+.     .|+|.+++.+|+
T Consensus        12 vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDT   91 (120)
T d1ad9b1          12 KKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDT   91 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcc
Confidence            5789999999999987443  788887  23211      11           2566666543     399999999999


Q ss_pred             EEEEEEEEc
Q psy12061         56 GIYSCTATN   64 (626)
Q Consensus        56 G~Y~C~a~n   64 (626)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (120)
T d1ad9b1          92 AFYFCAREK  100 (120)
T ss_dssp             EEEEEEEEB
T ss_pred             eEEEEEEcC
Confidence            999997643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.1e-05  Score=55.09  Aligned_cols=66  Identities=12%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             ceEEecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeEEEeecCCCCCEeEEEEEEeC
Q psy12061         90 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST  164 (626)
Q Consensus        90 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      ...|..|++|+|.|......  ...+.|+|+|.......       ........+.|.+++.+|+|.|+|.....
T Consensus        13 ~~~V~~G~~VTL~C~~~~~~--~~~f~L~k~g~~~~~~~-------~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          13 GLVLMPGENISLTCSSAHIP--FDRFSLAKEGELSLPQH-------QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CSEECTTCCCEEEEECSSSC--CSEEEEEETTCSSCCSE-------EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCccCCCCeEEEEEeCCCCC--ceEEEEEECCcccceEE-------cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            34789999999999853222  23678999986433211       11113357999999999999999988644

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.78  E-value=4.5e-05  Score=56.48  Aligned_cols=79  Identities=11%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             CCceEEecCCcEEEEEEecccCC-cceeEEEee--CCEEeccc-----cCCccCCCeeEe----cCCeEEEeecCCCCCE
Q psy12061         88 PPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTH--NGVRIGNM-----DLNELETPNINI----DGGLLEITNASFADAG  155 (626)
Q Consensus        88 ~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~~----~~~~l~i~~~~~~d~g  155 (626)
                      |..+.+.+|++++|.|...+... ..-.+.|+|  .|......     ........++..    ....|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            67899999999999999876432 112368997  22222100     000001112211    3357999999999999


Q ss_pred             eEEEEEEeCCC
Q psy12061        156 EYECVVKSTVG  166 (626)
Q Consensus       156 ~Y~C~a~n~~g  166 (626)
                      .|.|.+.+..+
T Consensus        87 ~YyCa~~~~~~   97 (112)
T d1lgva1          87 DYYCSSYDGSS   97 (112)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEeeecCCC
Confidence            99998765443

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.78  E-value=6.1e-05  Score=55.52  Aligned_cols=80  Identities=14%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccc-----cCCccCCCeeEe------cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNM-----DLNELETPNINI------DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~~------~~~~l~i~~~~  150 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|+|  .|+....-     ........++..      ....|.|.+++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~--~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~   80 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYP--ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ   80 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCC--EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCc--ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC
Confidence            3456788899999999999987665433  468987  23221100     000000112211      13479999999


Q ss_pred             CCCCEeEEEEEEeCC
Q psy12061        151 FADAGEYECVVKSTV  165 (626)
Q Consensus       151 ~~d~g~Y~C~a~n~~  165 (626)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsa~YyCA~~~~~   95 (110)
T d1ac6a_          81 ESDSAVYYCALSGGN   95 (110)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             cCCCcccceeecCCC
Confidence            999999999876543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.78  E-value=2e-05  Score=57.97  Aligned_cols=65  Identities=23%  Similarity=0.417  Sum_probs=46.9

Q ss_pred             CCCCceEEEEeeeCCCCC--CeeEEEe--CCEE------ccC-----------CCcEEEccCC-----cEEEccCCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK--PKFVWKK--DGNI------IGS-----------GGRRKIFENG-----NLLISPVSRDDS   55 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~--p~i~W~~--~~~~------i~~-----------~~~~~~~~~g-----~L~i~~v~~~d~   55 (626)
                      +++|++++|.|.++|...  -.+.|+|  .|+.      |..           .+|+.+..|.     .|+|.+++.+|+
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDT   91 (127)
T d2fb4h1          12 VQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDT   91 (127)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecce
Confidence            478999999999998633  3688887  2221      211           2566666543     399999999999


Q ss_pred             EEEEEEEEcCC
Q psy12061         56 GIYSCTATNVH   66 (626)
Q Consensus        56 G~Y~C~a~n~~   66 (626)
                      +.|.|......
T Consensus        92 A~YYCAr~~~~  102 (127)
T d2fb4h1          92 GVYFCARDGGH  102 (127)
T ss_dssp             EEEEEEEECSS
T ss_pred             eEEEEEEecCC
Confidence            99999876443

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.78  E-value=4.1e-05  Score=56.68  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=49.6

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEeccc-----cCCccCCCeeEe------cCCeEEEeecC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNM-----DLNELETPNINI------DGGLLEITNAS  150 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~-----~~~~~~~~~~~~------~~~~l~i~~~~  150 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++  .|.....-     ........++..      ....|.|.+++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFD--YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQ   80 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCC--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCC--eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCc
Confidence            3456788899999999999997765543  357886  33322100     000000111111      13489999999


Q ss_pred             CCCCEeEEEEEEe
Q psy12061        151 FADAGEYECVVKS  163 (626)
Q Consensus       151 ~~d~g~Y~C~a~n  163 (626)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999997764

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.2e-05  Score=53.19  Aligned_cols=73  Identities=23%  Similarity=0.351  Sum_probs=52.3

Q ss_pred             CCCCCceEEEEeeeCCCCCCee-EEEeCCEEccCCCcEEEccCC-cEEEccCCCCCCEEEEEEEEcCCCCceeeEEE
Q psy12061          1 YAGEGGNVTIFCNPEAAPKPKF-VWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRL   75 (626)
Q Consensus         1 ~~~~G~~~~l~C~~~g~p~p~i-~W~~~~~~i~~~~~~~~~~~g-~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   75 (626)
                      |+.+|+++.+.|.++ +|..++ .|.+++..+..++........ -++|.++...|+|.|.|.|... |....+..|
T Consensus        16 ~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~yl   90 (95)
T d1fltx_          16 HMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLYKTNYL   90 (95)
T ss_dssp             EECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEEEEEEE
T ss_pred             EEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEEEEEEE
Confidence            578999999999998 566655 455577766555444443332 3999999999999999999766 444444333

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.77  E-value=3.6e-05  Score=56.43  Aligned_cols=62  Identities=16%  Similarity=0.267  Sum_probs=44.2

Q ss_pred             CCCCceEEEEeeeCCCCC----CeeEEEe--CCEEc------cC----------CCcEEEccCC-----cEEEccCCCCC
Q psy12061          2 AGEGGNVTIFCNPEAAPK----PKFVWKK--DGNII------GS----------GGRRKIFENG-----NLLISPVSRDD   54 (626)
Q Consensus         2 ~~~G~~~~l~C~~~g~p~----p~i~W~~--~~~~i------~~----------~~~~~~~~~g-----~L~i~~v~~~d   54 (626)
                      |++|++++|.|.++|...    --+.|+|  .|+.+      ..          .+|+.+..+.     .|+|.+++.+|
T Consensus        12 vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eD   91 (123)
T d1r0ah1          12 VQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETAD   91 (123)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccccc
Confidence            468999999999987532    2578997  33321      11          1466665433     39999999999


Q ss_pred             CEEEEEEEE
Q psy12061         55 SGIYSCTAT   63 (626)
Q Consensus        55 ~G~Y~C~a~   63 (626)
                      ++.|.|...
T Consensus        92 sAvYyCAr~  100 (123)
T d1r0ah1          92 TAIYYCAQS  100 (123)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeccc
Confidence            999999864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.77  E-value=1.5e-05  Score=57.21  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             EecCCcEEEEEEecccCCcceeEEEeeCCEEeccccCCccCCCeeEecCCeE---EEeecCCCCCEeEEEEEEeC
Q psy12061         93 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL---EITNASFADAGEYECVVKST  164 (626)
Q Consensus        93 v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~l---~i~~~~~~d~g~Y~C~a~n~  164 (626)
                      +..|+.++|.|.+.+--++.+.+.|++||..+..... .  .......++.+   ....+..++...|+|.+...
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~-~--t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVY-E--TSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEE-E--CCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCce-e--eeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            4568899999999997666799999999988864311 0  01111122222   22234456677899998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=2.6e-05  Score=58.06  Aligned_cols=76  Identities=13%  Similarity=0.203  Sum_probs=48.5

Q ss_pred             eeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecccc--------CCccCCCeeEe-----cCCeEEEeec
Q psy12061         85 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMD--------LNELETPNINI-----DGGLLEITNA  149 (626)
Q Consensus        85 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~~~--------~~~~~~~~~~~-----~~~~l~i~~~  149 (626)
                      .+.|..+.+.+|++++|.|.....- .  .+.|+|  .|+....--        .......++..     ....|+|.++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~~-~--~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISGH-R--SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTL   79 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTTC-C--EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             EeCCCeEEECCCCCEEEEEEECCCC-C--EEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCC
Confidence            3457788999999999999965542 2  468997  333332100        00001111111     1247999999


Q ss_pred             CCCCCEeEEEEEEe
Q psy12061        150 SFADAGEYECVVKS  163 (626)
Q Consensus       150 ~~~d~g~Y~C~a~n  163 (626)
                      +.+|+|.|.|.+..
T Consensus        80 ~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          80 ELGDSALYLCASSL   93 (113)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcccceeeeeeeeC
Confidence            99999999998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.76  E-value=1.8e-05  Score=57.91  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             eeeCCCceEEecCCcEEEEEEecccCCcceeEEEee--CCEEecc---------ccCCccCCCeeEecCCeEEEeecCCC
Q psy12061         84 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGN---------MDLNELETPNINIDGGLLEITNASFA  152 (626)
Q Consensus        84 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~--~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~  152 (626)
                      +.+.|..+.+.+|++++|.|........  .+.|++  .|.....         ......-..........|.|.+++.+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   81 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINN--FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPE   81 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCC--CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeec
Confidence            3455778889999999999997765543  358986  3333210         00100001111113348999999999


Q ss_pred             CCEeEEEEEE
Q psy12061        153 DAGEYECVVK  162 (626)
Q Consensus       153 d~g~Y~C~a~  162 (626)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (107)
T d3cx5k1          82 DIATYFCQHH   91 (107)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcEEeeeC
Confidence            9999999754