Psyllid ID: psy12064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHEEEEcccHHHHHHHHHHHEEccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEccccHHHHHHcccccccccEEccEEEEEEEEEEHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccEEEEEEEEEccccccccEEEEEEEEEEccccHccccEEEEEcccccHHccEEHHEHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEKSLSPKQCALLDASLDSIKNYFHAAGNglkktyldkspelASLRYALSLYTQTTDALIKTFVQSQCNegrdligneeQLEFFELHICVKdycfarddrlVGVAVLQLKDIVEQVKHQICVKdycfarddrlVGVAVLQLKDIVEQK
Flexible Loop (DISEMBL)
MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK
Low Complexity Region (SEG)
MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK
Disordered region (IsUnstruct)
*********CALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDI****
Disordered Region (DISOPRED)
***SLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCN********EEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDI****
Disordered Region (DISEMBL)
********QCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK
Disordered Region (DISPRO)
***SLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCN***D****EEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q8K0T7	2210	Protein unc-13 homolog C	yes	N/A	0.932	0.062	0.351	3e-26
O14795	1591	Protein unc-13 homolog B	yes	N/A	0.466	0.043	0.739	3e-25
Q9Z1N9	1602	Protein unc-13 homolog B	no	N/A	0.466	0.043	0.739	5e-25
Q4KUS2	1712	Protein unc-13 homolog A	no	N/A	0.972	0.084	0.392	9e-25
Q62769	1622	Protein unc-13 homolog B	yes	N/A	0.5	0.045	0.689	2e-24
Q9UPW8	1703	Protein unc-13 homolog A	no	N/A	0.560	0.048	0.604	2e-23
Q62768	1735	Protein unc-13 homolog A	no	N/A	0.439	0.037	0.738	3e-22
P27715	2155	Phorbol ester/diacylglyce	yes	N/A	0.513	0.035	0.615	1e-21
Q62770	2204	Protein unc-13 homolog C	no	N/A	0.472	0.031	0.642	2e-21
Q8NB66	2214	Protein unc-13 homolog C	no	N/A	0.472	0.031	0.628	5e-21

>sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 64/202 (31%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            K L+P+QCA+++  L +IK YFHA GNGLKK +L+KSP+L SLRYALSLYTQTTDALIK 
Sbjct: 1964 KGLTPRQCAIVEVVLATIKQYFHAGGNGLKKNFLEKSPDLHSLRYALSLYTQTTDALIKK 2023

Query: 63   FVQSQCNEGR---DLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKH- 118
            F+++Q ++ R   D +G         +H+ V       D + V V V+ + D+  Q    
Sbjct: 2024 FIETQGSQSRSSKDAVGQ------ISVHVDVTTTPGTGDHK-VTVKVIAINDLNWQTTAM 2076

Query: 119  -----QICV------------------------------------------------KDY 125
                 ++C+                                                KDY
Sbjct: 2077 FRPFVEVCMLGPSLGDKKRKQGTKTKSNTWSPKYNETFQFILGNENRPGAYELHLSVKDY 2136

Query: 126  CFARDDRLVGVAVLQLKDIVEQ 147
            CFAR+DR++G+ V+QL++I E+
Sbjct: 2137 CFAREDRIIGMTVIQLQNIAEK 2158

May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses.
Mus musculus (taxid: 10090)

>sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 62/69 (89%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            ++L+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct: 1345 RNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1404

Query: 63   FVQSQCNEG 71
            FV+SQ  +G
Sbjct: 1405 FVRSQTTQG 1413

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses.

Homo sapiens (taxid: 9606)

>sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2

 Score =  113 bits (282), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 62/69 (89%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            ++L+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct: 1356 RNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1415

Query: 63   FVQSQCNEG 71
            FV+SQ  +G
Sbjct: 1416 FVRSQTAQG 1424

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses.

Mus musculus (taxid: 10090)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 52/196 (26%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            KSL+PKQCA+++ +LD+IK YFHA G GLKKT+L+KSP+L SLRYALSLYTQ TD LIKT
Sbjct: 1461 KSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKT 1520

Query: 63   FVQSQCNEG---RDLIGN-EEQLEFF------ELHICVKDYCFARDDRL----------- 101
            FVQ+Q  +G    D +G     +E F      E  + VK    A D +            
Sbjct: 1521 FVQTQSAQGSGVEDPVGEVSVHVELFTHPGTGEQKVTVK-VVAANDLKWQTSGIFRPFIE 1579

Query: 102  VGVAVLQLKD----IVEQVKHQICVKDY--------------------------CFARDD 131
            V +   QL D       + K+      Y                          CFAR+D
Sbjct: 1580 VNIVGPQLSDKKRKFATKSKNNSWAPKYNESFQFSLSADAGPECYELQVCVKDYCFARED 1639

Query: 132  RLVGVAVLQLKDIVEQ 147
            R VG+AVLQL+++ ++
Sbjct: 1640 RTVGLAVLQLRELAQR 1655

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

>sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 63/74 (85%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct: 1357 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1416

Query: 63   FVQSQCNEGRDLIG 76
            FV+SQ  +  D  G
Sbjct: 1417 FVRSQTAQVHDGKG 1430

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 3/86 (3%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            KSL+PKQCA+++ +LD+IK YFHA G GLKKT+L+KSP+L SLRYALSLYTQ TD LIKT
Sbjct: 1452 KSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKT 1511

Query: 63   FVQSQCNEGRDLIGNEEQLEFFELHI 88
            FVQ+Q  +G   +G E+ +    +H+
Sbjct: 1512 FVQTQSAQG---LGVEDPVGEVSVHV 1534

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q62768|UN13A_RAT Protein unc-13 homolog A OS=Rattus norvegicus GN=Unc13a PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 58/65 (89%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            KSL+PKQCA+++ +LD+IK YFHA G GLKKT+L+KSP+L SLRYALSLYTQ TD LIKT
Sbjct: 1465 KSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKT 1524

Query: 63   FVQSQ 67
            FVQ+Q
Sbjct: 1525 FVQTQ 1529

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Rattus norvegicus (taxid: 10116)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score =  102 bits (253), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 63/78 (80%), Gaps = 2/78 (2%)

Query: 2    EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIK 61
            EKSL+P+QC +LD +LD+IK+ FHA+G GLKK++ +KSPEL SL+YALSLYTQTT+ LIK
Sbjct: 1893 EKSLTPRQCTVLDCALDAIKDSFHASGKGLKKSFFEKSPELQSLKYALSLYTQTTEQLIK 1952

Query: 62   TFVQSQCNEGRDLIGNEE 79
            TF+ SQ    +DL   E+
Sbjct: 1953 TFITSQ--RQQDLPSQEQ 1968

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

>sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 59/70 (84%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            K L+P+QCA+++  L +IK YFHA GNGLKK +L+KSP+L SLRYALSLYTQTTDALIK 
Sbjct: 1958 KGLTPRQCAIMEVVLATIKQYFHAGGNGLKKNFLEKSPDLHSLRYALSLYTQTTDALIKK 2017

Query: 63   FVQSQCNEGR 72
            F+++Q ++ R
Sbjct: 2018 FIETQGSQSR 2027

May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3

 Score =  100 bits (248), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 58/70 (82%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            + L+P+QCA+++  L +IK YFHA GNGLKK +L+KSP+L SLRYALSLYTQTTDALIK 
Sbjct: 1968 RGLTPRQCAIMEVVLATIKQYFHAGGNGLKKNFLEKSPDLQSLRYALSLYTQTTDALIKK 2027

Query: 63   FVQSQCNEGR 72
            F+ +Q ++ R
Sbjct: 2028 FIDTQTSQSR 2037

May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
449514217	1583	PREDICTED: protein unc-13 homolog B [Tae	0.979	0.091	0.430	7e-31
339252454	1282	putative phorbol ester/diacylglycerol-bi	0.770	0.088	0.482	6e-30
312095729	316	hypothetical protein LOAG_12889 [Loa loa	0.966	0.452	0.401	1e-26
350402055	3014	PREDICTED: hypothetical protein LOC10074	0.520	0.025	0.734	3e-26
380020086	1525	PREDICTED: protein unc-13 homolog B-like	0.520	0.050	0.734	7e-26
242015967	212	unc-13, putative [Pediculus humanus corp	0.479	0.334	0.774	9e-26
322797029	1056	hypothetical protein SINV_11730 [Solenop	0.486	0.068	0.756	1e-25
256084371	742	unc-13 (munc13) [Schistosoma mansoni]	0.945	0.188	0.375	2e-25
307173529	1257	Protein unc-13-like protein B [Camponotu	0.459	0.054	0.785	4e-25
340714749	2550	PREDICTED: protein unc-13 homolog B-like	0.520	0.030	0.734	5e-25

>gi|449514217|ref|XP_002190352.2| PREDICTED: protein unc-13 homolog B [Taeniopygia guttata]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 111/195 (56%), Gaps = 50/195 (25%)

Query: 3    KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
            +SL+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct: 1337 RSLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1396

Query: 63   FVQSQCNEGR---DLIG--------------------------NEEQLE-------FFEL 86
            FVQSQ  +G    D +G                          NE + +       F E+
Sbjct: 1397 FVQSQTAQGSGVDDPVGEVSIQIDLYTHPGTGEHKVTVKVVAANELKWQTSGMFRPFVEI 1456

Query: 87   -----HICVKDYCFARDDRLVGVA---------VLQLKDIVEQVKHQICVKDYCFARDDR 132
                 H   K   F    +    A         +L  +D  +  + Q+CVKDYCFAR+DR
Sbjct: 1457 TMIGPHQSDKKRKFTTKSKSNNWAPKYNETFHFILGNEDGPDAYELQVCVKDYCFAREDR 1516

Query: 133  LVGVAVLQLKDIVEQ 147
            ++G+AV+QL+DI ++
Sbjct: 1517 VLGIAVMQLRDIADK 1531

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|339252454|ref|XP_003371450.1| putative phorbol ester/diacylglycerol-binding protein unc-13 [Trichinella spiralis] gi|316968292|gb|EFV52588.1| putative phorbol ester/diacylglycerol-binding protein unc-13 [Trichinella spiralis]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 94/145 (64%), Gaps = 31/145 (21%)

Query: 2    EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIK 61
            ++SL+PKQC +LDASLD++K+YFHA G+GLKK++L+KS E  SL+YALSLYTQTTD LIK
Sbjct: 1068 DRSLTPKQCTVLDASLDTVKSYFHAGGSGLKKSFLEKSAEYQSLKYALSLYTQTTDQLIK 1127

Query: 62   TFV-----------QSQCNEGRD--------------------LIGNEEQLEFFELHICV 90
            TF+            +Q ++ R                     ++GNE++LE +EL    
Sbjct: 1128 TFIALQKEQVHIVGPNQADKKRKFATKTKTNNWAPKFNEVFYFILGNEDELENYELIFQA 1187

Query: 91   KDYCFARDDRLVGVAVLQLKDIVEQ 115
            KDYCFAR+DRL+GV VLQL+   E 
Sbjct: 1188 KDYCFAREDRLIGVGVLQLRSFAEH 1212

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312095729|ref|XP_003148449.1| hypothetical protein LOAG_12889 [Loa loa]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 44/187 (23%)

Query: 2   EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIK 61
           E+SL+PKQC +LDA+LD++K  FHA G GLKK++ +KSPEL SL+YALSLYTQTT+ LIK
Sbjct: 65  ERSLTPKQCTVLDAALDAVKECFHAGGQGLKKSFFEKSPELQSLKYALSLYTQTTEQLIK 124

Query: 62  TFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQV----- 116
           TF+ SQ  + +DL   E+ +    + + +  +  + D + V V +L   D+  Q      
Sbjct: 125 TFITSQ--KQQDLPSQEQPVGEVSIQVDLFTHPGSGDQK-VTVKILAANDLRWQTVSTFK 181

Query: 117 ---------------KHQIC---------------------VKDYCFARDDRLVGVAVLQ 140
                          K ++                      VKDYCFAR+DR+VGV VLQ
Sbjct: 182 PFVEVHLVGPHLADKKRKMATKSKNFLGNEGEPEHCELMFQVKDYCFAREDRIVGVGVLQ 241

Query: 141 LKDIVEQ 147
           L ++VEQ
Sbjct: 242 LANMVEQ 248

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|350402055|ref|XP_003486352.1| PREDICTED: hypothetical protein LOC100744677 [Bombus impatiens]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/79 (73%), Positives = 67/79 (84%)

Query: 1    MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
            +EK+LSPKQCA+L+ +LD+IK YFHA GNGLKKT+L+KSPEL SLRYALSLYTQTTD LI
Sbjct: 2757 VEKNLSPKQCAVLEVALDTIKQYFHAGGNGLKKTFLEKSPELQSLRYALSLYTQTTDTLI 2816

Query: 61   KTFVQSQCNEGRDLIGNEE 79
            KTFV SQ N+  D  G EE
Sbjct: 2817 KTFVTSQVNQVPDTAGTEE 2835

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020086|ref|XP_003693927.1| PREDICTED: protein unc-13 homolog B-like [Apis florea]

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/79 (73%), Positives = 67/79 (84%)

Query: 1    MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
            +EK+LSPKQCA+L+ +LD+IK YFHA GNGLKKT+L+KSPEL SLRYALSLYTQTTD LI
Sbjct: 1268 VEKNLSPKQCAVLEVALDTIKQYFHAGGNGLKKTFLEKSPELQSLRYALSLYTQTTDTLI 1327

Query: 61   KTFVQSQCNEGRDLIGNEE 79
            KTFV SQ N+  D  G EE
Sbjct: 1328 KTFVTSQVNQVPDTAGTEE 1346

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015967|ref|XP_002428611.1| unc-13, putative [Pediculus humanus corporis] gi|212513269|gb|EEB15873.1| unc-13, putative [Pediculus humanus corporis]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 65/71 (91%)

Query: 1   MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
           +E++L+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSPEL SLRYALSLYTQTTDALI
Sbjct: 50  VERNLTPKQCAVLDVALDTIKQYFHAGGNGLKKTFLEKSPELQSLRYALSLYTQTTDALI 109

Query: 61  KTFVQSQCNEG 71
           KTFV +Q NEG
Sbjct: 110 KTFVTTQLNEG 120

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797029|gb|EFZ19343.1| hypothetical protein SINV_11730 [Solenopsis invicta]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 65/74 (87%)

Query: 1   MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
           +EK+LSPKQCA+L+ +LD+IK YFHA GNGLKKT+L+KSPEL SLRYALSLYTQTTD LI
Sbjct: 784 VEKNLSPKQCAVLEVALDTIKQYFHAGGNGLKKTFLEKSPELQSLRYALSLYTQTTDTLI 843

Query: 61  KTFVQSQCNEGRDL 74
           KTFV SQ N+G  L
Sbjct: 844 KTFVTSQVNQGMSL 857

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|256084371|ref|XP_002578403.1| unc-13 (munc13) [Schistosoma mansoni]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 102/197 (51%), Gaps = 57/197 (28%)

Query: 2   EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIK 61
           E++L+P+ C +LD +LD+IKNYFHA G+GLKK YLDKSPEL SLRYALSLYTQTTDALIK
Sbjct: 452 ERNLTPRHCQILDIALDAIKNYFHAGGSGLKKAYLDKSPELQSLRYALSLYTQTTDALIK 511

Query: 62  TFVQSQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVL-----------QLK 110
            FV +Q ++ +  I  E+ +    +H+ +  +  +  +  V + V+             K
Sbjct: 512 NFVATQTSQDKPAI--EDSVGELSIHVDLFRHP-SHGEHKVTITVIAANNLKWTTSGTFK 568

Query: 111 DIVEQV---------KHQICVK----------------------------------DYCF 127
             +E V         KH+   K                                  DYCF
Sbjct: 569 PFIEVVLFGPLLSEKKHKFATKSKNNVWSPVFNETFTFFLSAGSDPESYELHMCAKDYCF 628

Query: 128 ARDDRLVGVAVLQLKDI 144
            R DRL+G+ VLQL+D+
Sbjct: 629 GRTDRLIGLTVLQLRDL 645

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|307173529|gb|EFN64439.1| Protein unc-13-like protein B [Camponotus floridanus]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 63/70 (90%)

Query: 1    MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
            +EK+LSPKQCA+LD +LD+IK YFHA GNGLKKT+L+KSPEL SLRYALSLYTQTTD LI
Sbjct: 952  VEKNLSPKQCAVLDVALDTIKQYFHAGGNGLKKTFLEKSPELQSLRYALSLYTQTTDTLI 1011

Query: 61   KTFVQSQCNE 70
            KTFV SQ N+
Sbjct: 1012 KTFVTSQINQ 1021

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714749|ref|XP_003395887.1| PREDICTED: protein unc-13 homolog B-like [Bombus terrestris]

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/79 (73%), Positives = 67/79 (84%), Gaps = 2/79 (2%)

Query: 1    MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
            +EK+LSPKQCA+L+ +LD+IK YFHA GNGLKKT+L+KSPEL SLRYALSLYTQTTD LI
Sbjct: 2295 VEKNLSPKQCAVLEVALDTIKQYFHAGGNGLKKTFLEKSPELQSLRYALSLYTQTTDTLI 2354

Query: 61   KTFVQSQCNEGRDLIGNEE 79
            KTFV SQ N+  D  G EE
Sbjct: 2355 KTFVTSQVNQ--DTAGTEE 2371

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
UNIPROTKB|F1M113	854	Unc13b "Protein unc-13 homolog	0.479	0.083	0.704	1e-34
UNIPROTKB|F1NU99	1261	F1NU99 "Uncharacterized protei	0.439	0.051	0.784	1.3e-34
UNIPROTKB|F1NY18	1587	F1NY18 "Uncharacterized protei	0.439	0.040	0.784	2.4e-34
UNIPROTKB|F8W8M9	1610	UNC13B "Protein unc-13 homolog	0.479	0.044	0.718	5.1e-34
UNIPROTKB|B1AM27	1622	UNC13B "Protein unc-13 homolog	0.479	0.043	0.718	5.2e-34
RGD|619723	1622	Unc13b "unc-13 homolog B (C. e	0.479	0.043	0.704	6.7e-34
UNIPROTKB|F1LPE8	1622	Unc13b "Protein unc-13 homolog	0.479	0.043	0.704	6.7e-34
UNIPROTKB|F1LXM4	1622	Unc13b "Protein unc-13 homolog	0.479	0.043	0.704	6.7e-34
UNIPROTKB|Q62769	1622	Unc13b "Protein unc-13 homolog	0.479	0.043	0.704	6.7e-34
UNIPROTKB|D4A3S4	1985	Unc13b "Protein unc-13 homolog	0.479	0.035	0.704	1.1e-33

UNIPROTKB|F1M113 Unc13b "Protein unc-13 homolog B" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
 Identities = 50/71 (70%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:   590 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 649

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:   650 FVRSQTAQVHD 660

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

UNIPROTKB|F1NU99 F1NU99 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 51/65 (78%), Positives = 60/65 (92%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             +SL+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1016 RSLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1075

Query:    63 FVQSQ 67
             FVQ+Q
Sbjct:  1076 FVQTQ 1080

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NY18 F1NY18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 51/65 (78%), Positives = 60/65 (92%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             +SL+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1341 RSLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1400

Query:    63 FVQSQ 67
             FVQ+Q
Sbjct:  1401 FVQTQ 1405

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=IEA

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IEA

GO:0060384 "innervation" evidence=IEA

UNIPROTKB|F8W8M9 UNC13B "Protein unc-13 homolog B" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
 Identities = 51/71 (71%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1345 RNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1404

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1405 FVRSQTTQVHD 1415

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B1AM27 UNC13B "Protein unc-13 homolog B" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 5.2e-34, Sum P(2) = 5.2e-34
 Identities = 51/71 (71%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD+IK YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1357 RNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1416

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1417 FVRSQTTQVHD 1427

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|619723 Unc13b "unc-13 homolog B (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
 Identities = 50/71 (70%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1357 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1416

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1417 FVRSQTAQVHD 1427

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA;ISO

GO:0007528 "neuromuscular junction development" evidence=ISO

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISO

GO:0016082 "synaptic vesicle priming" evidence=ISO

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0035249 "synaptic transmission, glutamatergic" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=ISO

GO:0060384 "innervation" evidence=ISO

UNIPROTKB|F1LPE8 Unc13b "Protein unc-13 homolog B" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
 Identities = 50/71 (70%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1357 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1416

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1417 FVRSQTAQVHD 1427

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LXM4 Unc13b "Protein unc-13 homolog B" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
 Identities = 50/71 (70%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1357 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1416

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1417 FVRSQTAQVHD 1427

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q62769 Unc13b "Protein unc-13 homolog B" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
 Identities = 50/71 (70%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1357 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1416

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1417 FVRSQTAQVHD 1427

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A3S4 Unc13b "Protein unc-13 homolog B" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 50/71 (70%), Positives = 62/71 (87%)

Query:     3 KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
             ++L+PKQCA+LD +LD++K YFHA GNGLKKT+L+KSP+L SLRYALSLYTQTTD LIKT
Sbjct:  1720 RNLTPKQCAVLDLALDTVKQYFHAGGNGLKKTFLEKSPDLQSLRYALSLYTQTTDTLIKT 1779

Query:    63 FVQSQCNEGRD 73
             FV+SQ  +  D
Sbjct:  1780 FVRSQTAQVHD 1790

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27715	UNC13_CAEEL	No assigned EC number	0.6153	0.5135	0.0352	yes	N/A
O14795	UN13B_HUMAN	No assigned EC number	0.7391	0.4662	0.0433	yes	N/A
Q62769	UN13B_RAT	No assigned EC number	0.6891	0.5	0.0456	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
pfam10540	119	pfam10540, Membr_traf_MHD, Munc13 (mammalian uncoo	2e-24
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	2e-22

>gnl|CDD|220800 pfam10540, Membr_traf_MHD, Munc13 (mammalian uncoordinated) homology domain

 Score = 90.8 bits (226), Expect = 2e-24
 Identities = 40/62 (64%), Positives = 50/62 (80%)

Query: 2   EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIK 61
           EK LSP+QCA L  +L ++K +FHA GNGLKK +L+KSPE  SL+YALSLYTQ+TD LI+
Sbjct: 58  EKPLSPRQCARLYVALQTLKQFFHAEGNGLKKEFLEKSPEFQSLKYALSLYTQSTDELIE 117

Query: 62  TF 63
            F
Sbjct: 118 KF 119

Munc13 proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana, C. elegans, Drosophila melanogaster, mouse, rat and human, some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. Length = 119

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 85.9 bits (213), Expect = 2e-22
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 75  IGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQ 115
           +GNE+  E +ELHICVKDYCFARDDRLVGV VLQL+DI + 
Sbjct: 61  LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQA 101

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG1011|consensus	1283		100.0
PF10540	137	Membr_traf_MHD: Munc13 (mammalian uncoordinated) h	99.91
KOG1011|consensus	1283		99.13
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	97.68
KOG1328|consensus	1103		94.9
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	94.67
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	94.04
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	93.99
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	93.89
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	92.64
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	91.99
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	91.58
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	89.95
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	88.74
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	88.55
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	88.36
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	88.04
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	88.02
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	87.64
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	87.54
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	85.72
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	85.29
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	85.17
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	84.48
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	84.32
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	84.17
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	84.16
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	83.99
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	83.75
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	83.71
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	82.99
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	82.92
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	82.46
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	81.62
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	81.04
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	81.01

>KOG1011|consensus

Probab=100.00  E-value=9.5e-64  Score=465.19  Aligned_cols=135  Identities=61%  Similarity=1.025  Sum_probs=129.6

Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhhhhcCCCccccccccCcchhhHHHHHhhhhhhhHHHHHHHHHhhcccC---------
Q psy12064          1 MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCNEG---------   71 (148)
Q Consensus         1 ~~k~LtpkQCavld~aldtiK~yFhagg~GlKk~fLeks~~l~slryalsLytqtTd~LIk~fv~tQ~~qg---------   71 (148)
                      ++||||||||||||+|||||||||||||+||||+|||||||||||||||||||||||.|||+||++|..||         
T Consensus      1030 e~ksltpkqcavld~aldtikq~fhagg~glkktflekspdlqslryalslytqttd~liktfv~sq~~q~~gvedpvge 1109 (1283)
T KOG1011|consen 1030 EEKSLTPKQCAVLDLALDTIKQYFHAGGKGLKKTFLEKSPDLQSLRYALSLYTQTTDQLIKTFVTSQRQQGPGVEDPVGE 1109 (1283)
T ss_pred             HhccCCccceehhhhhHHHHHHHHhccCcchhhhHhhcCccHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCCCCCCce
Confidence            57999999999999999999999999999999999999999999999999999999999999999999984         


Q ss_pred             -------------------------Cc------------------------------------------------ccCCC
Q psy12064         72 -------------------------RD------------------------------------------------LIGNE   78 (148)
Q Consensus        72 -------------------------nd------------------------------------------------~lgne   78 (148)
                                               ||                                                +||||
T Consensus      1110 vsvqvdlfthpgtgehkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e 1189 (1283)
T KOG1011|consen 1110 VSVQVDLFTHPGTGEHKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNE 1189 (1283)
T ss_pred             EEEEEEeecCCCCCcceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccC
Confidence                                     33                                                99999


Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCce-----eEEEEEee
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRL-----VGVAVLQL  141 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~-----vG~~vlql  141 (148)
                      ++|++||||+||||||||||||+||||||||++++++|||+      ||.+.+|.     +|++++++
T Consensus      1190 ~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a------~W~pLgrrihmDeTGLtiLRI 1251 (1283)
T KOG1011|consen 1190 GGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCA------CWVPLGRRIHMDETGLTILRI 1251 (1283)
T ss_pred             CCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCcee------EeeeccccccccccchhHHHH
Confidence            99999999999999999999999999999999999999999      99999988     78888775

>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p

Probab=99.91  E-value=8.4e-26  Score=171.39  Aligned_cols=62  Identities=56%  Similarity=0.952  Sum_probs=42.0

Q ss_pred             CCCCCchhhHHHHHHHHHHHHhhhhcCCCccccccccCcchhhHHHHHhhhhhhhHHHHHHH
Q psy12064          2 EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTF   63 (148)
Q Consensus         2 ~k~LtpkQCavld~aldtiK~yFhagg~GlKk~fLeks~~l~slryalsLytqtTd~LIk~f   63 (148)
                      .|+|||+||++|+.+|++|++||||||+||++++|||||++|+|+|+++||+|+||+||++|
T Consensus        76 ~~~Lt~~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f  137 (137)
T PF10540_consen   76 QRPLTPKQCDRLFKWLDTLKDFFHAEGNGLPLEFLEKSPEYQSLRYILSLYDQSTDELIEEF  137 (137)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHCCCTS--HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence            58999999999999999999999999999999999999999999999999999999999998

Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.

>KOG1011|consensus

Probab=99.13  E-value=2.1e-11  Score=116.03  Aligned_cols=36  Identities=56%  Similarity=1.043  Sum_probs=33.5

Q ss_pred             hccceeeeEEeceeeecCCceeEEEEEeehhhhhcC
Q psy12064        113 VEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQK  148 (148)
Q Consensus       113 AeKGScalcVKDyCf~r~dr~vG~~vlql~~i~~~~  148 (148)
                      .+..++++|||||||||+||+|||+||||++|+++|
T Consensus      1192 Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kG 1227 (1283)
T KOG1011|consen 1192 PEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKG 1227 (1283)
T ss_pred             CceEEEEEeehhheeecccceeeeeeeehhhHhhcC
Confidence            455689999999999999999999999999999987

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=97.68  E-value=7.5e-05  Score=55.64  Aligned_cols=48  Identities=63%  Similarity=1.061  Sum_probs=42.5

Q ss_pred             ccCCCCCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         74 LIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        74 ~lgne~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      -+.+++.|+...|+++|.||-|.+.|+++|-++++|+++...++...|
T Consensus        60 ~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w  107 (120)
T cd08395          60 ILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACW  107 (120)
T ss_pred             EeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEE
Confidence            445666788899999999999999999999999999999999987744

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG1328|consensus

Probab=94.90  E-value=0.03  Score=55.16  Aligned_cols=53  Identities=38%  Similarity=0.554  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhhhhcCCCccccccccCcchhhHHHHHhhhhhhhHHHHHHHHHh
Q psy12064         13 LDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQS   66 (148)
Q Consensus        13 ld~aldtiK~yFhagg~GlKk~fLeks~~l~slryalsLytqtTd~LIk~fv~t   66 (148)
                      |=-||..+-+||||+|.||--.-|.-.|++. |.-.|||+.-.||.||..|-..
T Consensus       869 l~eal~~Lv~FFHAeGqGL~le~L~t~~~~r-l~~~L~lhkt~T~~lIe~fY~d  921 (1103)
T KOG1328|consen  869 LFEALHVLVEFFHAEGQGLSLEALDTNPEHR-LVKILSLHKTPTEQLIEKFYKD  921 (1103)
T ss_pred             HHHHHHHHHHHHhccCCCcchHhhccCcHHH-HHHHHHhcCCCHHHHHHHHHHH
Confidence            3457788889999999999999999999998 9999999999999999998653

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=94.67  E-value=0.051  Score=41.72  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=36.5

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhcc-ceeeeEE
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQ-VKHQICV  122 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeK-GScalcV  122 (148)
                      ++++.-.|++.|+|+-..+.|.++|-+.++|+++.+. +....|+
T Consensus        74 ~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~  118 (148)
T cd04010          74 EDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWY  118 (148)
T ss_pred             ccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCccee
Confidence            3455678999999999889999999999999999887 5655443

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=94.04  E-value=0.11  Score=36.24  Aligned_cols=60  Identities=22%  Similarity=0.311  Sum_probs=46.1

Q ss_pred             CCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEEEEeeh
Q psy12064         81 LEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLK  142 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~vlql~  142 (148)
                      +..-.|.+.|.|+--.+.|+++|.+.++|+++++++...-  ..+.+.+.++-.|--.+.|+
T Consensus        62 ~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~--~~~~~~~~~k~~G~i~~~l~  121 (124)
T cd04044          62 SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQEN--LTKNLLRNGKPVGELNYDLR  121 (124)
T ss_pred             CCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccC--cchhhhcCCccceEEEEEEE
Confidence            3455899999999988899999999999999999877631  12455677777777666553

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=93.99  E-value=0.066  Score=38.96  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             CCCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         78 EEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        78 e~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      ++......|+++|+||--.+.|.++|-+.++|.++...+....|+
T Consensus        76 ~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~  120 (124)
T cd08389          76 PEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWL  120 (124)
T ss_pred             HHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEE
Confidence            345667889999999987778889999999999996666666664

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=93.89  E-value=0.063  Score=37.99  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             ceEEEeeeece--eeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         83 FFELHICVKDY--CFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        83 ~yEL~~~VKDY--CFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      .-.|++.|+|+  .|.+.|+.+|.+.++|.++...+....|.
T Consensus        83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~  124 (127)
T cd04030          83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWY  124 (127)
T ss_pred             CCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceE
Confidence            34566666665  55688999999999999997777666554

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=92.64  E-value=0.2  Score=37.28  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      +++....|++.|.||-....|.++|-+.++|.++...+....|+
T Consensus        73 ~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~  116 (137)
T cd08675          73 EDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWY  116 (137)
T ss_pred             ccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceE
Confidence            45577889999999999889999999999999998877777444

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=91.99  E-value=0.29  Score=34.41  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      -.|++.|.|+...+.|.++|.+.++|.++...++-..|.
T Consensus        81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~  119 (123)
T cd08390          81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWR  119 (123)
T ss_pred             cEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEE
Confidence            468999999999889999999999999998877766553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=91.58  E-value=0.24  Score=36.92  Aligned_cols=35  Identities=69%  Similarity=1.149  Sum_probs=30.2

Q ss_pred             hccceeeeEEeceeeecCCceeEEEEEeehhhhhc
Q psy12064        113 VEQVKHQICVKDYCFARDDRLVGVAVLQLKDIVEQ  147 (148)
Q Consensus       113 AeKGScalcVKDyCf~r~dr~vG~~vlql~~i~~~  147 (148)
                      .+.-.+.++|.||-+.+.|..+|-++++|.++...
T Consensus        67 ~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~  101 (120)
T cd08395          67 PESYELHICVKDYCFARDDRLVGVTVLQLRDIAQA  101 (120)
T ss_pred             CceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCC
Confidence            34456899999999999999999999999998654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=89.95  E-value=0.41  Score=33.99  Aligned_cols=43  Identities=23%  Similarity=0.232  Sum_probs=35.2

Q ss_pred             CCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEe
Q psy12064         81 LEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVK  123 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVK  123 (148)
                      .....|.+.|.||=..+.|.++|.+.++|.++...+....|.+
T Consensus        79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~  121 (124)
T cd08387          79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRK  121 (124)
T ss_pred             hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEE
Confidence            3456799999999766788999999999999988887776653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=88.74  E-value=0.91  Score=32.23  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=37.7

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccce----eeeEEeceeeecCC
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVK----HQICVKDYCFARDD  131 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGS----calcVKDyCf~r~d  131 (148)
                      .-.|++.|.|+--.+.|.++|.+.++|.++.+.|+    +.+.=++||+-..|
T Consensus        65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~~~~~~  117 (124)
T cd04049          65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVLED  117 (124)
T ss_pred             CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccceEEEEec
Confidence            45788999999877788999999999999987654    44445677765543

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=88.55  E-value=0.74  Score=32.64  Aligned_cols=55  Identities=22%  Similarity=0.233  Sum_probs=40.4

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeee--cCCceeEEEEEee
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFA--RDDRLVGVAVLQL  141 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~--r~dr~vG~~vlql  141 (148)
                      -.|.+.|.|+-..+.|..+|-+.++|.++...+....|+   ...  +.+...|--.+.+
T Consensus        61 ~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~---~L~~~~~~~~~G~l~l~~  117 (121)
T cd04042          61 QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKL---KLEDPNSDEDLGYISLVV  117 (121)
T ss_pred             CeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEE---ECCCCCCccCceEEEEEE
Confidence            479999999999999999999999999998777666443   232  1234556555544

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=88.36  E-value=0.63  Score=33.01  Aligned_cols=39  Identities=13%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      .-.|.+.|.||-....|..+|.+.++|.++...+....|
T Consensus        60 ~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w   98 (123)
T cd04025          60 DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGW   98 (123)
T ss_pred             CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCE
Confidence            456999999999888899999999999999877665533

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=88.04  E-value=0.61  Score=34.00  Aligned_cols=33  Identities=36%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhc
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVE  114 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAe  114 (148)
                      ..-.|++.|.||-..+.|+++|.+.++|+++.+
T Consensus        86 ~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          86 EGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             CCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            345789999999888889999999999998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=88.02  E-value=0.67  Score=32.73  Aligned_cols=42  Identities=19%  Similarity=0.134  Sum_probs=32.5

Q ss_pred             CCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         81 LEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      +..-.|.+.|+||--.+.|..+|.+.++|+++........|.
T Consensus        80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~  121 (125)
T cd08386          80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWK  121 (125)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEE
Confidence            334468999999986667789999999999998766666443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=87.64  E-value=0.67  Score=32.46  Aligned_cols=41  Identities=12%  Similarity=0.011  Sum_probs=31.4

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      ....|++.|.|+--.+.|.++|.+.++|.++.-.+....|+
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~  121 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWY  121 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEE
Confidence            35578899999986677789999999999996555555443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=87.54  E-value=0.78  Score=33.61  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccch--hccceeeeE
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDI--VEQVKHQIC  121 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~i--AeKGScalc  121 (148)
                      +.....|++.|.||=-.+.|.++|-+.++|.++  .+.++.++|
T Consensus        80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~  123 (128)
T cd08388          80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVS  123 (128)
T ss_pred             HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEE
Confidence            334456899998874445677999999999999  456999955

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=85.72  E-value=1  Score=31.85  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccce
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVK  117 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGS  117 (148)
                      .-.|.+.|.|+.-...|+++|.+.++|.++...+.
T Consensus        66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccC
Confidence            57899999999877789999999999999988765

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=85.29  E-value=3.2  Score=28.97  Aligned_cols=56  Identities=20%  Similarity=0.202  Sum_probs=40.4

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEEEEee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQL  141 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~vlql  141 (148)
                      ..-.|.+.|.|+-..+ |+++|-+.++|.++...+....|   |-..+.++..|--.|+|
T Consensus        61 ~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w---~~L~~~~~~~G~i~l~l  116 (118)
T cd08681          61 KKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDW---YELTLKGRYAGEVYLEL  116 (118)
T ss_pred             CCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCc---EEeccCCcEeeEEEEEE
Confidence            3457999999998766 99999999999999776543322   23345666777666655

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=85.17  E-value=1.8  Score=30.91  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=27.8

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccchh
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDIV  113 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iA  113 (148)
                      +|..-.|++.|.|+=-...|.++|.+.++|+++.
T Consensus        61 ~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~   94 (126)
T cd08682          61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLD   94 (126)
T ss_pred             CCcCCEEEEEEEEccccCCCceeEEEEEEHHHhh
Confidence            3566689999998854456889999999999997

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=84.48  E-value=1.9  Score=30.75  Aligned_cols=40  Identities=33%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      +.-.|.+.|+||=-...|+++|.+.++|+++.+.+....|
T Consensus        55 ~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~   94 (127)
T cd08373          55 PDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVT   94 (127)
T ss_pred             CCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEE
Confidence            4457888999986666789999999999999987765433

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=84.32  E-value=1.5  Score=30.80  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             CCceEEEeeeeceeeccCCeeeeeeeeeccchhccc
Q psy12064         81 LEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKG  116 (148)
                      +..-.|++.|.|+...+.|.++|-+.++|.+....+
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~  117 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD  117 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccC
Confidence            345689999999998889999999999999954433

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=84.17  E-value=1.4  Score=34.56  Aligned_cols=50  Identities=20%  Similarity=0.269  Sum_probs=38.5

Q ss_pred             EEEeeeece-eeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEE
Q psy12064         85 ELHICVKDY-CFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVA  137 (148)
Q Consensus        85 EL~~~VKDY-CFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~  137 (148)
                      -|.+.|.|+ =|.|.|.++|-++++|.++...-..+-   .+.+++.-+.+|-.
T Consensus        79 ~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~---~~~L~~~~k~~Gg~  129 (155)
T cd08690          79 GLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHE---SVDLMDGRKATGGK  129 (155)
T ss_pred             cEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceE---EEEhhhCCCCcCCE
Confidence            389999999 677999999999999999976655442   44577666666643

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=84.16  E-value=1.3  Score=31.72  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=27.8

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhcc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQ  115 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeK  115 (148)
                      -.|.+.|.|+.-...|+.+|-+.++|.++..+
T Consensus        80 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~  111 (131)
T cd04026          80 RRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM  111 (131)
T ss_pred             CEEEEEEEECCCCCCcceeEEEEEeHHHhCcC
Confidence            36888899998778899999999999999866

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=83.99  E-value=1.9  Score=29.86  Aligned_cols=37  Identities=19%  Similarity=0.075  Sum_probs=30.7

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      ..-.|++.|.|+=.. .|.++|.+.++|.++.+.+...
T Consensus        66 ~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~  102 (121)
T cd08391          66 PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFID  102 (121)
T ss_pred             CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccc
Confidence            345788999999766 8889999999999999877644

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=83.75  E-value=1.5  Score=31.92  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=29.5

Q ss_pred             EEEeeeeceeec-cCCeeeeeeeeeccchhccceeeeEE
Q psy12064         85 ELHICVKDYCFA-RDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        85 EL~~~VKDYCFa-r~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      .|++.|.|+.-. +.+..+|-+.++|+++.......-|+
T Consensus        79 ~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy  117 (119)
T cd08685          79 RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWY  117 (119)
T ss_pred             EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceE
Confidence            488999999854 56789999999999998544455443

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=83.71  E-value=2.2  Score=29.58  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=25.7

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccce
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQVK  117 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGS  117 (148)
                      -.|.+.|.||--.+.|..+|-+.++|+++.....
T Consensus        70 ~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~~  103 (110)
T cd04047          70 RPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSP  103 (110)
T ss_pred             CEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCCC
Confidence            3677888888777778888888888888874443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=82.99  E-value=1.5  Score=31.84  Aligned_cols=44  Identities=16%  Similarity=0.124  Sum_probs=34.9

Q ss_pred             CCCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         78 EEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        78 e~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      .+++..-.|++.|+||=-.+.|.++|-+.++|+++........|
T Consensus        75 ~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W  118 (122)
T cd08381          75 VEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKW  118 (122)
T ss_pred             hHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccce
Confidence            34566778999999997777889999999999999766554433

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=82.92  E-value=2.4  Score=32.79  Aligned_cols=42  Identities=21%  Similarity=0.072  Sum_probs=33.6

Q ss_pred             CCceEEEeeee-ceeeccCCeeeeeeeeeccchhccceeeeEE
Q psy12064         81 LEFFELHICVK-DYCFARDDRLVGVAVLQLKDIVEQVKHQICV  122 (148)
Q Consensus        81 p~~yEL~~~VK-DYCFar~Dr~vG~av~qL~~iAeKGScalcV  122 (148)
                      +..-.|+++|. ||=+.+.|..+|.+.++|.++.-.+....|.
T Consensus        92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy  134 (146)
T cd04028          92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWY  134 (146)
T ss_pred             CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEE
Confidence            67789999999 7877778889999999999985555555443

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=82.46  E-value=1.3  Score=33.00  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=30.7

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhcc
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQ  115 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeK  115 (148)
                      ++...-.|+++|.||=.-+.+..+|.+.++|.++-..
T Consensus        78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~  114 (124)
T cd08680          78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESS  114 (124)
T ss_pred             HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCC
Confidence            4567779999999987777788999999999999433

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=81.62  E-value=4.1  Score=31.11  Aligned_cols=62  Identities=29%  Similarity=0.406  Sum_probs=45.0

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccceee----------e----EEeceeee-------cCCceeEEEEEee
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ----------I----CVKDYCFA-------RDDRLVGVAVLQL  141 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca----------l----cVKDyCf~-------r~dr~vG~~vlql  141 (148)
                      .-.|.+.|.|+--...|.++|-+.+.|+++.+.....          +    --+|=|.+       -+|+++-=.+|+|
T Consensus        60 ~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l  139 (145)
T cd04038          60 MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKL  139 (145)
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEe
Confidence            3458889999985555779999999999987654322          1    23456766       5677788888899


Q ss_pred             hhh
Q psy12064        142 KDI  144 (148)
Q Consensus       142 ~~i  144 (148)
                      +++
T Consensus       140 ~~~  142 (145)
T cd04038         140 RNV  142 (145)
T ss_pred             ccc
Confidence            886

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=81.04  E-value=2.7  Score=31.87  Aligned_cols=44  Identities=18%  Similarity=0.255  Sum_probs=33.3

Q ss_pred             EEEeeeeceeeccC---CeeeeeeeeeccchhccceeeeEEeceeeecC
Q psy12064         85 ELHICVKDYCFARD---DRLVGVAVLQLKDIVEQVKHQICVKDYCFARD  130 (148)
Q Consensus        85 EL~~~VKDYCFar~---Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~  130 (148)
                      .|.+.|.||..-+.   |+.+|.+.++|.++.+......  ..+|+.-+
T Consensus        74 ~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~--~~~~~~l~  120 (137)
T cd08691          74 VLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGD--QELSYTLG  120 (137)
T ss_pred             EEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCc--eEEEEECC
Confidence            79999999976433   8999999999999987754432  44566433

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=81.01  E-value=4.1  Score=28.47  Aligned_cols=43  Identities=28%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEec
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKD  124 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKD  124 (148)
                      .|+.=.|.+.|.|+... .|.++|.+.++|+++ +.|+-.+..+|
T Consensus        68 ~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l-~~g~~~~~l~~  110 (128)
T cd00275          68 VPELAFLRFVVYDEDSG-DDDFLGQACLPLDSL-RQGYRHVPLLD  110 (128)
T ss_pred             CCCeEEEEEEEEeCCCC-CCcEeEEEEEEhHHh-cCceEEEEecC
Confidence            34433588899999877 778999999999998 45665555544

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
3swh_A	341	Munc13-1, Mun Domain, C-Terminal Module Length = 34		2e-23

>pdb|3SWH|A Chain A, Munc13-1, Mun Domain, C-Terminal Module Length = 341

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 58/65 (89%)
Query: 3   KSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKT 62
           KSL+PKQCA+++ +LD+IK YFHA G GLKKT+L+KSP+L SLRYALSLYTQ TD LIKT
Sbjct: 275 KSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKT 334
Query: 63  FVQSQ 67
           FVQ+Q
Sbjct: 335 FVQTQ 339

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
3swh_A	341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	4e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Length = 341

 Score = 80.8 bits (198), Expect = 4e-19
 Identities = 48/67 (71%), Positives = 58/67 (86%)

Query: 1   MEKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALI 60
             KSL+PKQCA+++ +LD+IK YFHA G GLKKT+L+KSP+L SLRYALSLYTQ TD LI
Sbjct: 273 EAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLI 332

Query: 61  KTFVQSQ 67
           KTFVQ+Q
Sbjct: 333 KTFVQTQ 339

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 44/150 (29%)

Query: 14  DASLDSIKNYF------HAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQ-- 65
           D     +  YF      H     LK     +   L  + + L             F++  
Sbjct: 463 DLIPPYLDQYFYSHIGHH-----LKNIEHPERMTLFRMVF-LDF----------RFLEQK 506

Query: 66  -----SQCNEGRDLIGNEEQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQI 120
                +  N    ++   +QL+F++ +IC  D    + +RLV      + D + +++  +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVN----AILDFLPKIEENL 559

Query: 121 CVKDYCFARDDRLVGVAVLQLKD--IVEQK 148
               Y       L+ +A L  +D  I E+ 
Sbjct: 560 ICSKYT-----DLLRIA-LMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
3swh_A	341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	99.87
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	94.21
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	93.44
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	92.42
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	91.28
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	90.77
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	89.61
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	89.56
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	89.41
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	89.27
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	89.15
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	88.21
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	88.09
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	87.84
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	87.62
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	87.52
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	87.33
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	86.93
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	86.8
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	85.89
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	85.86
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	85.69
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	83.66
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	83.21
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	82.71
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	82.31
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	82.31
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	82.17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	81.94

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}

Probab=99.87  E-value=2.2e-23  Score=176.93  Aligned_cols=68  Identities=71%  Similarity=1.093  Sum_probs=46.0

Q ss_pred             CCCCCchhhHHHHHHHHHHHHhhhhcCCCccccccccCcchhhHHHHHhhhhhhhHHHHHHHHHhhcc
Q psy12064          2 EKSLSPKQCALLDASLDSIKNYFHAAGNGLKKTYLDKSPELASLRYALSLYTQTTDALIKTFVQSQCN   69 (148)
Q Consensus         2 ~k~LtpkQCavld~aldtiK~yFhagg~GlKk~fLeks~~l~slryalsLytqtTd~LIk~fv~tQ~~   69 (148)
                      +|++||+||++|+.+|++||+||||||+||++.||||||++++|+|+|+||+++|++||++|++||++
T Consensus       274 ~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~~~~~  341 (341)
T 3swh_A          274 AKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQTQSA  341 (341)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999984

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=94.21  E-value=0.05  Score=41.89  Aligned_cols=53  Identities=17%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEE
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGV  136 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~  136 (148)
                      ....|+++||||==-.-||++|-++|+|++++..|++.++  |==.-...+.+|.
T Consensus        78 ~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~--~~LvD~n~~~~~a  130 (144)
T 3l9b_A           78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVS--DTLIDDNNAIIKT  130 (144)
T ss_dssp             TTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEE--EEEECTTSCEEEE
T ss_pred             CCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEe--ecccCCCCCcccc
Confidence            4558999999996555789999999999999999988865  3223333444553

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.44  E-value=0.47  Score=32.59  Aligned_cols=60  Identities=22%  Similarity=0.233  Sum_probs=44.5

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecC-C-ceeEEEEEee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARD-D-RLVGVAVLQL  141 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~-d-r~vG~~vlql  141 (148)
                      ..-+|++.|.|+--.+.|.++|.+.++|.++...+....|++.+..... + ..-|.--+.+
T Consensus        68 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~  129 (140)
T 2dmh_A           68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVI  129 (140)
T ss_dssp             TTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEE
Confidence            4568999999999888899999999999999888887777765544332 2 2345444443

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=92.42  E-value=0.29  Score=33.56  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceee-eEEeceeeecCCceeEEEEEeeh
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ-ICVKDYCFARDDRLVGVAVLQLK  142 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca-lcVKDyCf~r~dr~vG~~vlql~  142 (148)
                      ..-+|++.|.|+...+.|.++|-+.++|.++...|+.. .|+.   ....++..|---|++.
T Consensus        69 ~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~---L~~~~~~~G~i~l~l~  127 (136)
T 1wfj_A           69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYN---VVKDEEYKGEIWVALS  127 (136)
T ss_dssp             SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEE---EEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEE---eecCCccCEEEEEEEE
Confidence            34589999999998888999999999999997766422 2222   2256677776666553

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=91.28  E-value=0.51  Score=31.76  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEEEEeeh
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLK  142 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~vlql~  142 (148)
                      .|+.-.|++.|.|+-..+ |.++|-+.++|.++........     +|--.++--|..-++|.
T Consensus        66 ~~~~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~-----~~~L~~~~~g~i~~~le  122 (126)
T 1rlw_A           66 PNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEV-----PFIFNQVTEMVLEMSLE  122 (126)
T ss_dssp             TTSCCEEEEEEEECCSSC-CEEEEEEEEEGGGSCTTCEEEE-----EEEETTTEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCC-CceeEEEEEEHHHccCCCcEEE-----EEEcCCCceEEEEEEEE
Confidence            345568999999998776 8899999999999976554443     44444444444444443

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=90.77  E-value=0.38  Score=33.28  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=30.2

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccceee
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      -.|++.|.|+-..+.|..+|-+.++|.++.....-.
T Consensus        98 ~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~  133 (142)
T 2chd_A           98 KTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN  133 (142)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEE
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccE
Confidence            479999999988888889999999999997766544

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=89.61  E-value=0.5  Score=32.30  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             CCceEEEeeeeceeeccC--Ceeeeeeeeeccchhccc
Q psy12064         81 LEFFELHICVKDYCFARD--DRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~--Dr~vG~av~qL~~iAeKG  116 (148)
                      +..-.|++.|.|+--.+.  |.++|-+.++|.++...+
T Consensus        87 ~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~  124 (141)
T 1v27_A           87 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD  124 (141)
T ss_dssp             GGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS
T ss_pred             hcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC
Confidence            344689999999998776  999999999999997765

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=89.56  E-value=0.59  Score=32.31  Aligned_cols=38  Identities=11%  Similarity=0.050  Sum_probs=30.3

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      -.|++.|.|+-..+.|.++|-+.++|.++........|
T Consensus       100 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W  137 (143)
T 3f04_A          100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW  137 (143)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEE
T ss_pred             CEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceE
Confidence            57889999998888888999999999998765555433

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=89.41  E-value=0.65  Score=32.35  Aligned_cols=38  Identities=24%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      ..-.|++.|.|+--.+.|.++|-+.++|.++.......
T Consensus        86 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~  123 (134)
T 2b3r_A           86 RQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETV  123 (134)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEE
T ss_pred             CcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcc
Confidence            34589999999988888889999999999997655444

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=89.27  E-value=0.55  Score=31.70  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=26.3

Q ss_pred             CCceEEEeeeeceeeccC--Ceeeeeeeeeccchhccc
Q psy12064         81 LEFFELHICVKDYCFARD--DRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~--Dr~vG~av~qL~~iAeKG  116 (148)
                      +..-.|++.|.|+--.+.  |..+|-+.++|.++...+
T Consensus        84 ~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~  121 (129)
T 2bwq_A           84 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD  121 (129)
T ss_dssp             GGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS
T ss_pred             hcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc
Confidence            445689999999987765  899999999999987765

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.15  E-value=0.61  Score=32.29  Aligned_cols=39  Identities=15%  Similarity=0.074  Sum_probs=31.6

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      .-.|++.|.||--.+.|.++|-+.++|.++........|
T Consensus        92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W  130 (141)
T 2d8k_A           92 QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW  130 (141)
T ss_dssp             TSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEE
T ss_pred             cCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEE
Confidence            457999999998888889999999999999776544433

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=88.21  E-value=0.51  Score=33.03  Aligned_cols=37  Identities=16%  Similarity=0.040  Sum_probs=30.6

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhcccee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKH  118 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSc  118 (148)
                      ..-.|++.|.||-..+.|.++|-+.++|.++......
T Consensus        90 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~  126 (148)
T 3fdw_A           90 AQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKL  126 (148)
T ss_dssp             GGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCS
T ss_pred             CceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCc
Confidence            3456999999999988999999999999999655433

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=88.09  E-value=0.8  Score=31.67  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKG  116 (148)
                      -+|++.|.|+.-...|.++|-+.++|.++...+
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~  109 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG  109 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTT
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccC
Confidence            579999999997777889999999999998754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=87.84  E-value=0.66  Score=31.92  Aligned_cols=40  Identities=15%  Similarity=0.120  Sum_probs=32.3

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      ..-.|++.|.|+--.+.|..+|-+.++|.++........|
T Consensus        94 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W  133 (142)
T 1rh8_A           94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW  133 (142)
T ss_dssp             TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEE
T ss_pred             cCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeE
Confidence            4558999999999888889999999999998765444433

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=87.62  E-value=0.82  Score=31.49  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccchhc-cceee
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVE-QVKHQ  119 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAe-KGSca  119 (148)
                      ++..-.|++.|.||--.+.|.++|-+.++|.++.. .+..+
T Consensus        86 ~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~  126 (138)
T 1ugk_A           86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKML  126 (138)
T ss_dssp             TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEE
T ss_pred             HhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcch
Confidence            34456899999999988888899999999999965 35554

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=87.52  E-value=0.64  Score=34.70  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhcc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQ  115 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeK  115 (148)
                      -+|.+.|+|+.-...|.++|-+.|+|.++...
T Consensus        99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~  130 (157)
T 2fk9_A           99 GHLELAVFHETPLGYDHFVANCTLQFQELLRT  130 (157)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcc
Confidence            37899999998777788999999999999865

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.93  E-value=0.61  Score=32.51  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=29.7

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccceee
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      -.|++.|.||--.+.|.++|-+.++|.++.......
T Consensus        99 ~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~  134 (147)
T 2enp_A           99 RTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGH  134 (147)
T ss_dssp             SEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCC
T ss_pred             CEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCcc
Confidence            479999999987777889999999999997655433

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=86.80  E-value=1.2  Score=31.38  Aligned_cols=39  Identities=10%  Similarity=0.005  Sum_probs=30.4

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      .-.|++.|.||--.+.|.++|-+.++|.++.......-|
T Consensus       107 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W  145 (152)
T 1rsy_A          107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW  145 (152)
T ss_dssp             TCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEE
T ss_pred             CCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceE
Confidence            457999999998888889999999999998654444433

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=85.89  E-value=1.1  Score=31.24  Aligned_cols=33  Identities=9%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKG  116 (148)
                      -.|++.|.|+--.+.|.++|-+.++|.++....
T Consensus        98 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~  130 (149)
T 1a25_A           98 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG  130 (149)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc
Confidence            369999999988888889999999999987653

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=85.86  E-value=1.2  Score=31.44  Aligned_cols=30  Identities=20%  Similarity=0.346  Sum_probs=26.1

Q ss_pred             EEEeeeeceeec-cCCeeeeeeeeeccchhc
Q psy12064         85 ELHICVKDYCFA-RDDRLVGVAVLQLKDIVE  114 (148)
Q Consensus        85 EL~~~VKDYCFa-r~Dr~vG~av~qL~~iAe  114 (148)
                      .|++.|.|+-.. +.|..+|-+.++|.++..
T Consensus        94 ~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A           94 RLLVTVWNRASQSRQSGLIGCMSFGVKSLLT  124 (153)
T ss_dssp             EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC
T ss_pred             EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcC
Confidence            399999999874 559999999999999986

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=85.69  E-value=1.6  Score=31.65  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CCCceEEEeeee-ceeeccCCeeeeeeeeeccchhccceee
Q psy12064         80 QLEFFELHICVK-DYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        80 ~p~~yEL~~~VK-DYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      .+..-.|++.|. ||-..+.|.++|-+.++|.++.......
T Consensus        92 ~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~  132 (171)
T 2q3x_A           92 SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI  132 (171)
T ss_dssp             CCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEE
T ss_pred             cCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcc
Confidence            355678999999 9998888999999999999997544443

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=83.66  E-value=1.1  Score=31.27  Aligned_cols=35  Identities=17%  Similarity=0.062  Sum_probs=30.5

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccce
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVK  117 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGS  117 (148)
                      .-.|++.|.|+--.+.|..+|.+.++|.++.....
T Consensus        85 ~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~  119 (153)
T 3b7y_A           85 QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENP  119 (153)
T ss_dssp             TCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCT
T ss_pred             CCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCC
Confidence            45799999999988889999999999999977653

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=83.21  E-value=1.1  Score=31.57  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhccc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKG  116 (148)
                      -+|++.|.|+= ...|..+|-+.++|.+|...+
T Consensus        61 ~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           61 LGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             SEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCS
T ss_pred             CeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcC
Confidence            36999999999 556889999999999997665

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=82.71  E-value=1.8  Score=31.45  Aligned_cols=32  Identities=16%  Similarity=0.095  Sum_probs=27.4

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhc
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVE  114 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAe  114 (148)
                      .-.|++.|.||--.+.|.++|-+.++|.++..
T Consensus       111 ~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~  142 (155)
T 2z0u_A          111 QKTLRVDVCTTDRSHLEECLGGAQISLAEVCR  142 (155)
T ss_dssp             HCEEEEEEEEECTTSCEEEEEEEEEECTTSCT
T ss_pred             cCEEEEEEEECCCCCCCcEEEEEEEEHHHccC
Confidence            44799999999877778899999999999853

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=82.31  E-value=2.3  Score=32.42  Aligned_cols=38  Identities=13%  Similarity=0.057  Sum_probs=31.1

Q ss_pred             CCceEEEeeeeceeeccCCeeeeeeeeeccchhcccee
Q psy12064         81 LEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKH  118 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSc  118 (148)
                      ...-.|++.|.|+--.+.|.++|-+.++|.++......
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~  119 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT  119 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCE
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcc
Confidence            34568999999999888899999999999998654433

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=82.31  E-value=1.3  Score=30.31  Aligned_cols=31  Identities=19%  Similarity=0.148  Sum_probs=28.2

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVE  114 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAe  114 (148)
                      -.|++.|.|+--.+.|..+|-+.++|.++.+
T Consensus        73 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~  103 (133)
T 2ep6_A           73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD  103 (133)
T ss_dssp             CEEEEEEEEEETTEEEEECCBCEEEGGGCCS
T ss_pred             CEEEEEEEECCCCCCCCeeEEEEEEHHHccC
Confidence            3699999999998889999999999999965

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=82.17  E-value=1.8  Score=30.10  Aligned_cols=38  Identities=11%  Similarity=0.028  Sum_probs=30.0

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      ..-.|++.|.||--...|.++|-+.++|.++.......
T Consensus        88 ~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~  125 (138)
T 1wfm_A           88 PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA  125 (138)
T ss_dssp             TTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCC
T ss_pred             CCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccccc
Confidence            45689999999987777889999999999985333333

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.94  E-value=0.9  Score=31.33  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=26.2

Q ss_pred             ceEEEeeeecee-ecc-CCeeeeeeeeeccchhccc
Q psy12064         83 FFELHICVKDYC-FAR-DDRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        83 ~yEL~~~VKDYC-Far-~Dr~vG~av~qL~~iAeKG  116 (148)
                      .-.|++.|.|+- |.+ +|.++|-+.++|.++....
T Consensus        90 ~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~  125 (142)
T 2dmg_A           90 RRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK  125 (142)
T ss_dssp             HCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT
T ss_pred             cCEEEEEEEECCCccccCCcEEEEEEEecccccccc
Confidence            347999999998 444 5679999999999886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	94.58
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	94.52
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	93.68
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	92.81
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	92.73
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	92.02
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	90.69
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	90.49
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	90.47
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	89.72
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	89.34
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	88.55
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	88.38
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	84.12
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	82.33

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.036  Score=37.17  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=42.6

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEEEEee
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQL  141 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~vlql  141 (148)
                      ...+|++.|.|+...+.|.++|.+.++|.++...++...  ..|-..+.++..|..-|.|
T Consensus        69 ~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~--~~~~l~~~~~~~G~i~l~l  126 (136)
T d1wfja_          69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP--TAYNVVKDEEYKGEIWVAL  126 (136)
T ss_dssp             SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEE--EEEEEEETTEEEEEEEEEE
T ss_pred             ccceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCc--EEEEecCCCccCEEEEEEE
Confidence            346799999999998899999999999999987776542  1233345566666544444

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.02  Score=39.04  Aligned_cols=43  Identities=14%  Similarity=0.074  Sum_probs=35.0

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      +++....|++.|.|+...+.|.+||-++|+|.++........|
T Consensus        85 ~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W  127 (138)
T d1wfma_          85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQW  127 (138)
T ss_dssp             TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEE
T ss_pred             hhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEe
Confidence            3466789999999999888999999999999998655444444

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.68  E-value=0.057  Score=36.34  Aligned_cols=43  Identities=9%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEe
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVK  123 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVK  123 (148)
                      .|+.-.|++.|.||+..+.|.++|-+.++|..+.. |.-++-.+
T Consensus        69 ~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~-g~~~~~L~  111 (131)
T d1qasa2          69 VPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ-GYRHVHLL  111 (131)
T ss_dssp             CGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCC-EEEEEEEE
T ss_pred             cchhceEEEEEEEecCCCCCcEEEEEEEEEeccCC-CCEEEECC
Confidence            34445799999999999999999999999999853 54443333

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.054  Score=35.88  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             CCCceEEEeeeeceeeccC--Ceeeeeeeeeccchhccceee
Q psy12064         80 QLEFFELHICVKDYCFARD--DRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~--Dr~vG~av~qL~~iAeKGSca  119 (148)
                      +.....|+++|.|++..+.  |.++|-+.++|+++...+..+
T Consensus        79 ~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~  120 (125)
T d2bwqa1          79 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH  120 (125)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEE
T ss_pred             hcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCCE
Confidence            3456789999999997644  448999999999998777654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.73  E-value=0.031  Score=37.43  Aligned_cols=42  Identities=19%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             CCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeE
Q psy12064         80 QLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQIC  121 (148)
Q Consensus        80 ~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalc  121 (148)
                      ++....|++.|.||--.+.|.++|-+.++|.++.......-|
T Consensus        92 ~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W  133 (142)
T d1rh8a_          92 QLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW  133 (142)
T ss_dssp             HHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEE
T ss_pred             ccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEE
Confidence            456778999999999777889999999999999776655433

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.17  Score=33.02  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=31.7

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceee
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQ  119 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGSca  119 (148)
                      .+|..-.|++.|.|+-..+ |..+|-+.++|.++.......
T Consensus        65 ~~~~~~~L~v~V~d~d~~~-d~~lG~~~i~L~~l~~~~~~~  104 (126)
T d1rlwa_          65 DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKE  104 (126)
T ss_dssp             CTTSCCEEEEEEEECCSSC-CEEEEEEEEEGGGSCTTCEEE
T ss_pred             cCcccCcEEEEEEECCCCC-CCeEEEEEEEHHHccCCCeEE
Confidence            4566678999999998876 679999999999996654444

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.69  E-value=0.17  Score=34.10  Aligned_cols=36  Identities=11%  Similarity=0.019  Sum_probs=29.4

Q ss_pred             CceEEEeeeeceeeccCCeeeeeeeeeccchhccce
Q psy12064         82 EFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVK  117 (148)
Q Consensus        82 ~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGS  117 (148)
                      ....|++.|.||-..+.|+++|-++++|+++.....
T Consensus        98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~  133 (143)
T d1rsya_          98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV  133 (143)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSC
T ss_pred             CCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCC
Confidence            345699999999988889999999999999854433

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.49  E-value=0.15  Score=33.82  Aligned_cols=32  Identities=9%  Similarity=0.274  Sum_probs=28.4

Q ss_pred             EEEeeeeceeeccCCeeeeeeeeeccchhccc
Q psy12064         85 ELHICVKDYCFARDDRLVGVAVLQLKDIVEQV  116 (148)
Q Consensus        85 EL~~~VKDYCFar~Dr~vG~av~qL~~iAeKG  116 (148)
                      .|++.|.||.....|.++|-+.++|.++...+
T Consensus        83 ~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~  114 (132)
T d1a25a_          83 RLSVEIWDWDLTSRNDFMGSLSFGISELQKAG  114 (132)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC
T ss_pred             EEeEEEEecCCCCCCcEeEEEEEeHHHcCCCC
Confidence            69999999999999999999999999986543

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.39  Score=32.34  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.1

Q ss_pred             eEEEeeeeceeeccCCeeeeeeeeeccchhc
Q psy12064         84 FELHICVKDYCFARDDRLVGVAVLQLKDIVE  114 (148)
Q Consensus        84 yEL~~~VKDYCFar~Dr~vG~av~qL~~iAe  114 (148)
                      -+|++.|.||.-...|..+|-++++|+++..
T Consensus        65 ~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~   95 (133)
T d2nq3a1          65 SKLHFRVWSHQTLKSDVLLGTAALDIYETLK   95 (133)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEHHHHHH
T ss_pred             ceeEEEEEEccCCCCCceEEEEEEEHHHhhh
Confidence            3799999999988899999999999999954

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.16  Score=33.47  Aligned_cols=56  Identities=18%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             EEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEEEEeeh
Q psy12064         85 ELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVAVLQLK  142 (148)
Q Consensus        85 EL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~vlql~  142 (148)
                      .|.+.|.|+...+.|..+|-+.++|.++..... + |+.=......++.-|...+++.
T Consensus        67 ~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~-~-~~~l~~~~~~~~~~G~i~l~~~  122 (126)
T d2ep6a1          67 VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP-N-CYVLKNKDLEQAFKGVIYLEMD  122 (126)
T ss_dssp             EEEEEEEEEETTEEEEECCBCEEEGGGCCSSCC-E-ECCCBCSCTTSCCSSEEEEEEE
T ss_pred             eeEEEEEEccCCcCcceEEEEEEEHHHCCCCCc-e-EEEccccCCCCceeEEEEEEEE
Confidence            699999999999999999999999999965432 2 2111122334455566555554

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=89.34  E-value=0.15  Score=34.55  Aligned_cols=35  Identities=11%  Similarity=0.125  Sum_probs=31.3

Q ss_pred             ceEEEeeeeceeeccCCeeeeeeeeeccchhccce
Q psy12064         83 FFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVK  117 (148)
Q Consensus        83 ~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGS  117 (148)
                      .-+|.+.|.|+.....|.++|-+.++|.++.+.++
T Consensus        76 ~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~  110 (136)
T d1gmia_          76 GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS  110 (136)
T ss_dssp             ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC
T ss_pred             CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC
Confidence            35799999999999999999999999999987765

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.83  Score=30.67  Aligned_cols=50  Identities=12%  Similarity=0.361  Sum_probs=36.0

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhccceeeeEEeceeeecCCceeEEE
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVEQVKHQICVKDYCFARDDRLVGVA  137 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAeKGScalcVKDyCf~r~dr~vG~~  137 (148)
                      ..|+-.-|+++|+|+    +|..+|-++++|+.+ ..|--++...|    ..++-+..+
T Consensus        63 ~~~~l~~L~f~V~D~----d~~~lG~~~ipl~~l-~~GyR~vpL~~----~~g~~l~~~  112 (122)
T d2zkmx2          63 LMPELASLRVAVMEE----GNKFLGHRIIPINAL-NSGYHHLCLHS----ESNMPLTMP  112 (122)
T ss_dssp             SSGGGCEEEEEEEET----TTEEEEEEEEEGGGB-CCEEEEEEEEC----TTCCEEEEE
T ss_pred             CCCcccEEEEEEECC----CCCEEEEEEEEcccC-cCCceEEEccC----CCcCCCCCc
Confidence            446666899999997    489999999999877 55666666655    344444444

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.26  Score=33.16  Aligned_cols=39  Identities=18%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CCceEEEeeeeceeeccCCeeeeeeeeeccch-hccceee
Q psy12064         81 LEFFELHICVKDYCFARDDRLVGVAVLQLKDI-VEQVKHQ  119 (148)
Q Consensus        81 p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~i-AeKGSca  119 (148)
                      ...-.|++.|.|+.-.+.|++||-+.++|+++ ...+...
T Consensus        87 l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~  126 (138)
T d1ugka_          87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKML  126 (138)
T ss_dssp             GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEE
T ss_pred             cccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEE
Confidence            34557999999998888899999999999998 3555554

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.12  E-value=0.39  Score=31.54  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             CCCCceEEEeeeeceeeccCCeeeeeeeeeccchhc
Q psy12064         79 EQLEFFELHICVKDYCFARDDRLVGVAVLQLKDIVE  114 (148)
Q Consensus        79 ~~p~~yEL~~~VKDYCFar~Dr~vG~av~qL~~iAe  114 (148)
                      +++....|.+.|.|++.-+.|.++|-++++|+++.+
T Consensus        78 ~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~  113 (137)
T d2cm5a1          78 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE  113 (137)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHH
T ss_pred             HHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCc
Confidence            345677899999999999999999999999987644

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.33  E-value=0.97  Score=29.68  Aligned_cols=31  Identities=6%  Similarity=0.264  Sum_probs=27.7

Q ss_pred             ceeeeEEeceeeecCCceeEEEEEeehhhhh
Q psy12064        116 VKHQICVKDYCFARDDRLVGVAVLQLKDIVE  146 (148)
Q Consensus       116 GScalcVKDyCf~r~dr~vG~~vlql~~i~~  146 (148)
                      -.+.+.|.||.....|.++|-+.|+|.++..
T Consensus        82 ~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~  112 (132)
T d1a25a_          82 RRLSVEIWDWDLTSRNDFMGSLSFGISELQK  112 (132)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEHHHHTT
T ss_pred             CEEeEEEEecCCCCCCcEeEEEEEeHHHcCC
Confidence            3689999999999999999999999998854