Psyllid ID: psy12089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN
ccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccEEEEEcccEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccEEEEEccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccc
ccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHcccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHccccc
MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQllepnvlirsreVDKDIVNAVLPNVAKAYQDVAGkevnlkldndqflpvdttGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRvaifgrnpnlmalsDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQllepnvlirsreVDKDIVNAVLPNVAKAYQDVAGkevnlkldndqflpvdttGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN
MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAeeefniekgrlvqhqRLKIMEYYDRKEKQVELQKKiqssnmlnqARLKALKVREDHVRNVLDEarkrlgevtknrdkYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAeeefniekgrlvqhqRLKIMEYYDRKEKQVELQKKiqssnmlnqARLKALKVREDHVRNVLDEarkrlgevtknrdkYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELiaqqiipdirvaifgrnpn
MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQeanekaeeidakaeeeFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQeanekaeeidakaeeeFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN
***************MAFI*******************MMAF************************GRLVQHQRLKIMEYYD*************************LKV***HVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFI***********************GRLVQHQRLKIMEYYD*************************LKV***HVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG****
*************************************HMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLK*******************************LKVREDHVRNVLDEAR*********RDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR******************MMAFIEQEANEKAEEIDA*AE*EFNIEKGRLVQHQRL*********************************KVREDHVRNVLDE************DKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR***
MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN
**LSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRN**
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MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMxxxxxxxxxxxxxxxxxxxxxEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMxxxxxxxxxxxxxxxxxxxxxEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query467 2.2.26 [Sep-21-2011]
P31402226 V-type proton ATPase subu N/A N/A 0.473 0.977 0.737 9e-88
P54611226 V-type proton ATPase subu yes N/A 0.473 0.977 0.710 9e-86
Q6PCU2226 V-type proton ATPase subu yes N/A 0.473 0.977 0.597 1e-70
Q4R761226 V-type proton ATPase subu N/A N/A 0.473 0.977 0.592 2e-70
P36543226 V-type proton ATPase subu yes N/A 0.473 0.977 0.592 2e-70
P50518226 V-type proton ATPase subu yes N/A 0.473 0.977 0.592 2e-70
P11019226 V-type proton ATPase subu yes N/A 0.473 0.977 0.588 3e-70
Q9U1G5226 V-type proton ATPase subu N/A N/A 0.473 0.977 0.592 7e-67
Q32LB7226 V-type proton ATPase subu no N/A 0.473 0.977 0.574 8e-60
Q96A05226 V-type proton ATPase subu no N/A 0.473 0.977 0.565 3e-59
>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1 Back     alignment and function desciption
 Score =  324 bits (830), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 188/221 (85%)

Query: 247 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRK 306
           MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ QRLKIMEYY++K
Sbjct: 1   MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKK 60

Query: 307 EKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLI 366
           EKQVELQKKIQSSNMLNQARLK LKVREDHVRNVLDEARKRL EV K+   Y+ L+  LI
Sbjct: 61  EKQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLI 120

Query: 367 IQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGG 426
           +Q L QL+EP V +R R+ DK +V ++L    + Y+    K+V LK+DN+ FLP DT GG
Sbjct: 121 VQALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIKKDVVLKIDNENFLPPDTCGG 180

Query: 427 IELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN 467
           IEL+A +G+IKISNTLE+RLELIAQQ++P+IR A+FGRNPN
Sbjct: 181 IELIAAKGRIKISNTLESRLELIAQQLLPEIRNALFGRNPN 221
The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.
Manduca sexta (taxid: 7130)
>sp|P54611|VATE_DROME V-type proton ATPase subunit E OS=Drosophila melanogaster GN=Vha26 PE=2 SV=1 Back     alignment and function description
>sp|Q6PCU2|VATE1_RAT V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R761|VATE1_MACFA V-type proton ATPase subunit E 1 OS=Macaca fascicularis GN=ATP6V1E1 PE=2 SV=1 Back     alignment and function description
>sp|P36543|VATE1_HUMAN V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1 Back     alignment and function description
>sp|P50518|VATE1_MOUSE V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2 Back     alignment and function description
>sp|P11019|VATE1_BOVIN V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1 Back     alignment and function description
>sp|Q9U1G5|VATE_HETSC V-type proton ATPase subunit E OS=Heterodera schachtii PE=2 SV=1 Back     alignment and function description
>sp|Q32LB7|VATE2_BOVIN V-type proton ATPase subunit E 2 OS=Bos taurus GN=ATP6V1E2 PE=2 SV=1 Back     alignment and function description
>sp|Q96A05|VATE2_HUMAN V-type proton ATPase subunit E 2 OS=Homo sapiens GN=ATP6V1E2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
121543569226 putative vacuolar ATP synthase subunit E 0.473 0.977 0.751 2e-92
46561760226 putative vacuolar ATP synthase subunit E 0.473 0.977 0.751 4e-92
90820000226 putative vacuolar ATP synthase subunit E 0.473 0.977 0.737 1e-91
242024606226 vacuolar ATP synthase subunit E, putativ 0.473 0.977 0.742 7e-90
312371397226 hypothetical protein AND_22184 [Anophele 0.473 0.977 0.742 7e-90
345482285226 PREDICTED: V-type proton ATPase subunit 0.473 0.977 0.728 4e-89
91092062226 PREDICTED: similar to AGAP002401-PA [Tri 0.473 0.977 0.728 1e-88
299473919225 putative vacuolar ATP synthase subunit E 0.471 0.977 0.733 9e-88
31207169226 AGAP002401-PA [Anopheles gambiae str. PE 0.473 0.977 0.723 1e-87
332373890226 unknown [Dendroctonus ponderosae] 0.473 0.977 0.737 1e-87
>gi|121543569|gb|ABM55510.1| putative vacuolar ATP synthase subunit E [Maconellicoccus hirsutus] Back     alignment and taxonomy information
 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/221 (75%), Positives = 201/221 (90%)

Query: 247 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRK 306
           MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFN+EKGRLVQHQRLKIMEYY+RK
Sbjct: 1   MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNLEKGRLVQHQRLKIMEYYERK 60

Query: 307 EKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLI 366
           EKQVELQK IQSSNMLNQARLKALK RED+VR+VLDEAR+RLG++TK+ D Y ++++KL+
Sbjct: 61  EKQVELQKNIQSSNMLNQARLKALKFREDYVRDVLDEARRRLGQITKDVDSYKEVMKKLM 120

Query: 367 IQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGG 426
           +QGLLQLLE NV+IR RE D+ +VN +L  V + Y+ ++GK+VNLK+D+D FL  +T GG
Sbjct: 121 VQGLLQLLENNVVIRIREKDQSVVNDILSAVTEEYKRISGKDVNLKVDSDTFLSAETCGG 180

Query: 427 IELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN 467
           I+LLAQ+GKIKI+NTLE+RLELIA Q++P+IR+A+FGRNPN
Sbjct: 181 IDLLAQKGKIKINNTLESRLELIASQLVPEIRIALFGRNPN 221

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|46561760|gb|AAT01085.1| putative vacuolar ATP synthase subunit E [Homalodisca vitripennis] Back     alignment and taxonomy information
>gi|90820000|gb|ABD98757.1| putative vacuolar ATP synthase subunit E [Graphocephala atropunctata] Back     alignment and taxonomy information
>gi|242024606|ref|XP_002432718.1| vacuolar ATP synthase subunit E, putative [Pediculus humanus corporis] gi|212518194|gb|EEB19980.1| vacuolar ATP synthase subunit E, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|312371397|gb|EFR19600.1| hypothetical protein AND_22184 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|345482285|ref|XP_003424562.1| PREDICTED: V-type proton ATPase subunit E-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91092062|ref|XP_970621.1| PREDICTED: similar to AGAP002401-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|299473919|gb|ADJ18242.1| putative vacuolar ATP synthase subunit E [Nilaparvata lugens] Back     alignment and taxonomy information
>gi|31207169|ref|XP_312551.1| AGAP002401-PA [Anopheles gambiae str. PEST] gi|30177545|gb|EAA08088.2| AGAP002401-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|332373890|gb|AEE62086.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
FB|FBgn0015324226 Vha26 "Vacuolar H[+]-ATPase 26 0.473 0.977 0.638 8.9e-70
UNIPROTKB|Q5ZKJ9226 ATP6V1E1 "Uncharacterized prot 0.473 0.977 0.529 4.5e-59
UNIPROTKB|F1SHR3226 ATP6V1E1 "V-type proton ATPase 0.473 0.977 0.520 6.6e-58
ZFIN|ZDB-GENE-041212-51226 atp6v1e1a "ATPase, H+ transpor 0.473 0.977 0.520 1.1e-57
RGD|735157226 Atp6v1e1 "ATPase, H+ transport 0.473 0.977 0.524 1.4e-57
UNIPROTKB|Q6PCU2226 Atp6v1e1 "V-type proton ATPase 0.473 0.977 0.524 1.4e-57
UNIPROTKB|E2R1R4226 ATP6V1E1 "Uncharacterized prot 0.473 0.977 0.520 1.4e-57
UNIPROTKB|P36543226 ATP6V1E1 "V-type proton ATPase 0.473 0.977 0.520 1.7e-57
UNIPROTKB|Q4R761226 ATP6V1E1 "V-type proton ATPase 0.473 0.977 0.520 1.7e-57
MGI|MGI:894326226 Atp6v1e1 "ATPase, H+ transport 0.473 0.977 0.520 1.7e-57
FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 141/221 (63%), Positives = 169/221 (76%)

Query:   247 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQHQRLKIMEYYDRK 306
             MALSDADVQKQIKHMMAFIEQ                FNIEKGRLVQ QRLKIMEYY++K
Sbjct:     1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKK 60

Query:   307 EKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLI 366
             EKQVELQKKIQSSNMLNQARLK LKVREDHV +VLD+ARKRLGEVTKN+ +Y  ++ KLI
Sbjct:    61 EKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLI 120

Query:   367 IQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGG 426
             +QGL Q++EP V++R REVD  +V  VLP   + Y+    + V L +D   FL  DT GG
Sbjct:   121 VQGLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQINQNVELFIDEKDFLSADTCGG 180

Query:   427 IELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN 467
             +ELLA  G+IK+ NTLE+RL+LI+QQ++P+IR A+FGRN N
Sbjct:   181 VELLALNGRIKVPNTLESRLDLISQQLVPEIRNALFGRNVN 221
GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS
GO:0015992 "proton transport" evidence=NAS
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA
GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA
GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|Q5ZKJ9 ATP6V1E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHR3 ATP6V1E1 "V-type proton ATPase subunit E 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-51 atp6v1e1a "ATPase, H+ transporting, lysosomal , V1 subunit E1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|735157 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PCU2 Atp6v1e1 "V-type proton ATPase subunit E 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1R4 ATP6V1E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P36543 ATP6V1E1 "V-type proton ATPase subunit E 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R761 ATP6V1E1 "V-type proton ATPase subunit E 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PCU2VATE1_RATNo assigned EC number0.59720.47320.9778yesN/A
P11019VATE1_BOVINNo assigned EC number0.58820.47320.9778yesN/A
P50518VATE1_MOUSENo assigned EC number0.59270.47320.9778yesN/A
P54611VATE_DROMENo assigned EC number0.71040.47320.9778yesN/A
P36543VATE1_HUMANNo assigned EC number0.59270.47320.9778yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
pfam01991195 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su 3e-55
pfam01991195 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su 3e-55
COG1390194 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su 4e-18
COG1390194 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su 4e-18
PRK03963198 PRK03963, PRK03963, V-type ATP synthase subunit E; 1e-10
PRK03963198 PRK03963, PRK03963, V-type ATP synthase subunit E; 1e-10
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit Back     alignment and domain information 
 Score =  182 bits (463), Expect = 3e-55
 Identities = 89/199 (44%), Positives = 136/199 (68%), Gaps = 4/199 (2%)

Query: 42  FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLN 101
           FI QEA EKAEEI A+AEEEF IEK   V+    KI E Y++KEKQ E++K+I  SN  N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 102 QARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSR 161
           +ARLK L  RE+ + +V +EA++RL  +++++D+Y  L++ LI Q L++L EP V++RSR
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 162 EVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLE 221
           E D+++V + L    + Y++  GK+    + +     +D  GG+ L  + GKI++ NTLE
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGD----NIDCIGGVVLETEDGKIRVDNTLE 176

Query: 222 ARLELIAQQIIPDIRVAIF 240
           ARLE + +Q++P+IR A+F
Sbjct: 177 ARLERVFEQLLPEIRKALF 195

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit Back     alignment and domain information
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 467
KOG1664|consensus220 100.0
KOG1664|consensus220 100.0
PRK03963198 V-type ATP synthase subunit E; Provisional 100.0
PRK03963198 V-type ATP synthase subunit E; Provisional 100.0
PF01991198 vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte 99.97
PRK02292188 V-type ATP synthase subunit E; Provisional 99.97
PF01991198 vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte 99.97
PRK01194185 V-type ATP synthase subunit E; Provisional 99.96
PRK02292188 V-type ATP synthase subunit E; Provisional 99.96
COG1390194 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E 99.96
PRK01194185 V-type ATP synthase subunit E; Provisional 99.96
COG1390194 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E 99.96
PRK01558198 V-type ATP synthase subunit E; Provisional 99.89
PRK01558198 V-type ATP synthase subunit E; Provisional 99.86
PRK01005207 V-type ATP synthase subunit E; Provisional 99.81
PRK01005207 V-type ATP synthase subunit E; Provisional 99.79
TIGR03825255 FliH_bacil flagellar assembly protein FliH. This b 99.2
TIGR03825255 FliH_bacil flagellar assembly protein FliH. This b 99.18
PRK06669281 fliH flagellar assembly protein H; Validated 99.12
PRK06937204 type III secretion system protein; Reviewed 99.07
PRK06937204 type III secretion system protein; Reviewed 99.05
PRK09098233 type III secretion system protein HrpB; Validated 99.04
PRK06669281 fliH flagellar assembly protein H; Validated 98.99
PRK09098233 type III secretion system protein HrpB; Validated 98.98
PRK06328223 type III secretion system protein; Validated 98.94
PRK06328223 type III secretion system protein; Validated 98.83
TIGR03321246 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. 98.71
TIGR02499166 HrpE_YscL_not type III secretion apparatus protein 98.7
TIGR02499166 HrpE_YscL_not type III secretion apparatus protein 98.68
TIGR03321246 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. 98.66
COG1317234 FliH Flagellar biosynthesis/type III secretory pat 98.62
COG1317234 FliH Flagellar biosynthesis/type III secretory pat 98.56
PF06188191 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; 98.36
PF06188191 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; 98.32
PRK13386236 fliH flagellar assembly protein H; Provisional 98.18
PRK13386236 fliH flagellar assembly protein H; Provisional 98.14
PRK05687246 fliH flagellar assembly protein H; Validated 98.09
PRK05687246 fliH flagellar assembly protein H; Validated 98.07
PF02108128 FliH: Flagellar assembly protein FliH; InterPro: I 98.0
PF02108128 FliH: Flagellar assembly protein FliH; InterPro: I 97.97
PRK14474250 F0F1 ATP synthase subunit B; Provisional 97.81
PRK14474250 F0F1 ATP synthase subunit B; Provisional 97.78
PRK08475167 F0F1 ATP synthase subunit B; Validated 97.72
PRK08475167 F0F1 ATP synthase subunit B; Validated 97.69
PF06635207 NolV: Nodulation protein NolV; InterPro: IPR010586 97.57
PRK06032199 fliH flagellar assembly protein H; Validated 97.47
PF06635207 NolV: Nodulation protein NolV; InterPro: IPR010586 97.44
PRK13428445 F0F1 ATP synthase subunit delta; Provisional 97.41
PRK06032199 fliH flagellar assembly protein H; Validated 97.4
PRK13436179 F0F1 ATP synthase subunit delta; Provisional 96.61
PRK13436179 F0F1 ATP synthase subunit delta; Provisional 96.24
PRK13434184 F0F1 ATP synthase subunit delta; Provisional 95.98
PRK13430271 F0F1 ATP synthase subunit delta; Provisional 95.95
PRK13430271 F0F1 ATP synthase subunit delta; Provisional 95.91
PRK13434184 F0F1 ATP synthase subunit delta; Provisional 95.49
PRK14472175 F0F1 ATP synthase subunit B; Provisional 95.09
COG0712178 AtpH F0F1-type ATP synthase, delta subunit (mitoch 94.87
PRK13441180 F0F1 ATP synthase subunit delta; Provisional 94.84
PRK08404103 V-type ATP synthase subunit H; Validated 94.8
PRK13455184 F0F1 ATP synthase subunit B; Provisional 94.36
COG0712178 AtpH F0F1-type ATP synthase, delta subunit (mitoch 94.22
PRK13460173 F0F1 ATP synthase subunit B; Provisional 94.05
CHL00019184 atpF ATP synthase CF0 B subunit 93.96
PRK14471164 F0F1 ATP synthase subunit B; Provisional 93.9
TIGR0292685 AhaH ATP synthase archaeal, H subunit. he A1/A0 AT 93.52
PRK13441180 F0F1 ATP synthase subunit delta; Provisional 93.52
PRK07352174 F0F1 ATP synthase subunit B; Validated 93.49
COG2811108 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E 93.27
PRK05758177 F0F1 ATP synthase subunit delta; Validated 92.72
PRK08404103 V-type ATP synthase subunit H; Validated 92.55
TIGR01145172 ATP_synt_delta ATP synthase, F1 delta subunit. Thi 92.43
PRK13453173 F0F1 ATP synthase subunit B; Provisional 92.38
PRK07352174 F0F1 ATP synthase subunit B; Validated 92.08
PRK15322210 invasion protein OrgB; Provisional 91.65
PRK15354224 type III secretion system protein SsaK; Provisiona 91.65
PRK14472175 F0F1 ATP synthase subunit B; Provisional 91.65
PRK06231205 F0F1 ATP synthase subunit B; Validated 91.33
PRK13428 445 F0F1 ATP synthase subunit delta; Provisional 91.14
PRK13429181 F0F1 ATP synthase subunit delta; Provisional 91.12
TIGR0292685 AhaH ATP synthase archaeal, H subunit. he A1/A0 AT 90.66
PRK06231205 F0F1 ATP synthase subunit B; Validated 90.6
PRK15322210 invasion protein OrgB; Provisional 90.57
PRK05758177 F0F1 ATP synthase subunit delta; Validated 90.54
PRK00106535 hypothetical protein; Provisional 90.51
PRK13460173 F0F1 ATP synthase subunit B; Provisional 90.26
CHL00019184 atpF ATP synthase CF0 B subunit 90.19
TIGR01145172 ATP_synt_delta ATP synthase, F1 delta subunit. Thi 89.73
PRK14475167 F0F1 ATP synthase subunit B; Provisional 89.68
PRK09173159 F0F1 ATP synthase subunit B; Validated 89.01
PRK13455184 F0F1 ATP synthase subunit B; Provisional 88.6
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 88.26
PRK08474176 F0F1 ATP synthase subunit delta; Validated 88.22
PRK14473164 F0F1 ATP synthase subunit B; Provisional 88.02
PRK05759156 F0F1 ATP synthase subunit B; Validated 87.97
PRK13461159 F0F1 ATP synthase subunit B; Provisional 87.95
CHL00119184 atpD ATP synthase CF1 delta subunit; Validated 87.82
PRK05759156 F0F1 ATP synthase subunit B; Validated 87.49
PF00213172 OSCP: ATP synthase delta (OSCP) subunit; InterPro: 86.83
PRK13429181 F0F1 ATP synthase subunit delta; Provisional 86.65
PRK08476141 F0F1 ATP synthase subunit B'; Validated 86.27
PRK15354224 type III secretion system protein SsaK; Provisiona 86.1
KOG1662|consensus210 86.06
TIGR01144147 ATP_synt_b ATP synthase, F0 subunit b. This model 85.98
PRK14473164 F0F1 ATP synthase subunit B; Provisional 85.43
PRK08474176 F0F1 ATP synthase subunit delta; Validated 85.3
PRK12704520 phosphodiesterase; Provisional 85.27
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 85.17
PRK13461159 F0F1 ATP synthase subunit B; Provisional 85.07
PRK06568154 F0F1 ATP synthase subunit B; Validated 84.73
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 84.08
PRK07353140 F0F1 ATP synthase subunit B'; Validated 83.67
PRK14471164 F0F1 ATP synthase subunit B; Provisional 83.3
PF00213172 OSCP: ATP synthase delta (OSCP) subunit; InterPro: 82.98
PRK12704 520 phosphodiesterase; Provisional 82.97
PRK14475167 F0F1 ATP synthase subunit B; Provisional 82.94
PRK00106535 hypothetical protein; Provisional 82.67
CHL00119184 atpD ATP synthase CF1 delta subunit; Validated 82.09
TIGR01144147 ATP_synt_b ATP synthase, F0 subunit b. This model 81.88
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 81.63
PRK09174204 F0F1 ATP synthase subunit B'; Validated 80.8
PRK13454181 F0F1 ATP synthase subunit B'; Provisional 80.31
>KOG1664|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-59  Score=427.73  Aligned_cols=220  Identities=62%  Similarity=0.967  Sum_probs=216.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12089         27 GDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLK  106 (467)
Q Consensus        27 ~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~  106 (467)
                      |||++|++||++|++||+|||+|||+||..+|++|||+||.+||++++.+|++.|++|+||++++++|..|+..|++|++
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            67888888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCc
Q psy12089        107 ALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE  186 (467)
Q Consensus       107 ~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~  186 (467)
                      +|++|+++++.+|++|..+|...+.+++.|+.+|++||.||+..|++|.++|+||+.|.++|++++++|..+|..++|..
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~  160 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccCCCCc
Q psy12089        187 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNL  246 (467)
Q Consensus       187 ~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r  246 (467)
                      +++.+|.+.|||++|.|||+|+|.||+|.|+|||++||+.++++.+|+||+.|||.||||
T Consensus       161 ~e~~id~~~fL~~~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~nr  220 (220)
T KOG1664|consen  161 VEVQIDKKDFLPPDVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPNR  220 (220)
T ss_pred             ceeeechhccCCccccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999998

>KOG1664|consensus Back     alignment and domain information
>PRK03963 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK03963 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK02292 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK01194 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK02292 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Back     alignment and domain information
>PRK01194 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>TIGR03825 FliH_bacil flagellar assembly protein FliH Back     alignment and domain information
>TIGR03825 FliH_bacil flagellar assembly protein FliH Back     alignment and domain information
>PRK06669 fliH flagellar assembly protein H; Validated Back     alignment and domain information
>PRK06937 type III secretion system protein; Reviewed Back     alignment and domain information
>PRK06937 type III secretion system protein; Reviewed Back     alignment and domain information
>PRK09098 type III secretion system protein HrpB; Validated Back     alignment and domain information
>PRK06669 fliH flagellar assembly protein H; Validated Back     alignment and domain information
>PRK09098 type III secretion system protein HrpB; Validated Back     alignment and domain information
>PRK06328 type III secretion system protein; Validated Back     alignment and domain information
>PRK06328 type III secretion system protein; Validated Back     alignment and domain information
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B Back     alignment and domain information
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family Back     alignment and domain information
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family Back     alignment and domain information
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B Back     alignment and domain information
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [] Back     alignment and domain information
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [] Back     alignment and domain information
>PRK13386 fliH flagellar assembly protein H; Provisional Back     alignment and domain information
>PRK13386 fliH flagellar assembly protein H; Provisional Back     alignment and domain information
>PRK05687 fliH flagellar assembly protein H; Validated Back     alignment and domain information
>PRK05687 fliH flagellar assembly protein H; Validated Back     alignment and domain information
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE Back     alignment and domain information
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK08475 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK08475 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species [] Back     alignment and domain information
>PRK06032 fliH flagellar assembly protein H; Validated Back     alignment and domain information
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species [] Back     alignment and domain information
>PRK13428 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK06032 fliH flagellar assembly protein H; Validated Back     alignment and domain information
>PRK13436 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK13436 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK13434 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK13430 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK13430 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK13434 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion] Back     alignment and domain information
>PRK13441 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK08404 V-type ATP synthase subunit H; Validated Back     alignment and domain information
>PRK13455 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion] Back     alignment and domain information
>PRK13460 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>CHL00019 atpF ATP synthase CF0 B subunit Back     alignment and domain information
>PRK14471 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>TIGR02926 AhaH ATP synthase archaeal, H subunit Back     alignment and domain information
>PRK13441 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK07352 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] Back     alignment and domain information
>PRK05758 F0F1 ATP synthase subunit delta; Validated Back     alignment and domain information
>PRK08404 V-type ATP synthase subunit H; Validated Back     alignment and domain information
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit Back     alignment and domain information
>PRK13453 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK07352 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK15322 invasion protein OrgB; Provisional Back     alignment and domain information
>PRK15354 type III secretion system protein SsaK; Provisional Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK13428 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK13429 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>TIGR02926 AhaH ATP synthase archaeal, H subunit Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK15322 invasion protein OrgB; Provisional Back     alignment and domain information
>PRK05758 F0F1 ATP synthase subunit delta; Validated Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK13460 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>CHL00019 atpF ATP synthase CF0 B subunit Back     alignment and domain information
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK09173 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK13455 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>PRK08474 F0F1 ATP synthase subunit delta; Validated Back     alignment and domain information
>PRK14473 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK05759 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK13461 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated Back     alignment and domain information
>PRK05759 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK13429 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PRK08476 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK15354 type III secretion system protein SsaK; Provisional Back     alignment and domain information
>KOG1662|consensus Back     alignment and domain information
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b Back     alignment and domain information
>PRK14473 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK08474 F0F1 ATP synthase subunit delta; Validated Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK13461 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>PRK07353 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK14471 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated Back     alignment and domain information
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK13454 F0F1 ATP synthase subunit B'; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
4dl0_J233 Crystal Structure Of The Heterotrimeric Egchead Per 1e-22
2dm9_A198 Crystal Structure Of Ph1978 From Pyrococcus Horikos 2e-08
2dm9_A198 Crystal Structure Of Ph1978 From Pyrococcus Horikos 2e-08
4dt0_A208 The Structure Of The Peripheral Stalk Subunit E Fro 2e-08
4dt0_A208 The Structure Of The Peripheral Stalk Subunit E Fro 2e-08
2dma_A198 Crystal Structure Of Ph1978 From Pyrococcus Horikos 3e-08
2dma_A198 Crystal Structure Of Ph1978 From Pyrococcus Horikos 3e-08
>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 120/220 (54%), Gaps = 2/220 (0%)
Query: 246 LMALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQHQRLKIMEYYDR 305
           + AL+   V  ++  M AFI +                + IEK  +V+++   I   +  
Sbjct: 5   ITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKS 64
Query: 306 KEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKL 365
           K K+  L ++I  S + N+ RLK L  RE  +  + +E +++L  +  NRD+Y  +++ L
Sbjct: 65  KLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSL 124
Query: 366 IIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEV--NLKLDNDQFLPVDT 423
           I++ LL+LLEP  ++++ E D D++ ++  ++ + Y + A +     + + ND       
Sbjct: 125 IVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDLV 184
Query: 424 TGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463
           +GG+ +     KI+I+NTLE RL+L++++ +P IR+ ++G
Sbjct: 185 SGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYG 224
>pdb|2DM9|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3 Length = 198 Back     alignment and structure
>pdb|2DM9|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3 Length = 198 Back     alignment and structure
>pdb|4DT0|A Chain A, The Structure Of The Peripheral Stalk Subunit E From Pyrococcus Horikoshii Length = 208 Back     alignment and structure
>pdb|4DT0|A Chain A, The Structure Of The Peripheral Stalk Subunit E From Pyrococcus Horikoshii Length = 208 Back     alignment and structure
>pdb|2DMA|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3 (Form Ii) Length = 198 Back     alignment and structure
>pdb|2DMA|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3 (Form Ii) Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
2dm9_A198 V-type ATP synthase subunit E; A-ATPase, structura 5e-39
2dm9_A198 V-type ATP synthase subunit E; A-ATPase, structura 5e-39
3v6i_A187 V-type ATP synthase subunit E; peripheral stator s 6e-30
3v6i_A187 V-type ATP synthase subunit E; peripheral stator s 6e-30
2kz9_A69 V-type proton ATPase subunit E; V-ATPase, proton t 5e-21
2kz9_A69 V-type proton ATPase subunit E; V-ATPase, proton t 5e-20
3lg8_A106 A-type ATP synthase subunit E; archaea, peripheral 4e-15
3lg8_A106 A-type ATP synthase subunit E; archaea, peripheral 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198 Back     alignment and structure
 Score =  139 bits (351), Expect = 5e-39
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 11/207 (5%)

Query: 35  QIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKI 94
             + ++  I +EA  K E I  +A ++    K    ++   K      R + Q EL+K+ 
Sbjct: 3   GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62

Query: 95  QSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEP 154
             +N   + R K L ++E+ + +VL+E ++RL  +++  D+Y + ++ L+ + + +L E 
Sbjct: 63  IIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSE--DEYFESVKALLKEAIKELNEK 120

Query: 155 NVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKI 214
            V + S E    ++ + +  +     DV+ +             VDT GG+ +  + G+I
Sbjct: 121 KVRVMSNEKTLGLIASRIEEIKSELGDVSIELG---------ETVDTMGGVIVETEDGRI 171

Query: 215 KISNTLEARLELIAQQIIPDIRVAIFG 241
           +I NT EAR+E    +I   I   +FG
Sbjct: 172 RIDNTFEARMERFEGEIRSTIAKVLFG 198
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198 Back     alignment and structure
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187 Back     alignment and structure
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187 Back     alignment and structure
>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR {Saccharomyces cerevisiae} Length = 69 Back     alignment and structure
>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR {Saccharomyces cerevisiae} Length = 69 Back     alignment and structure
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106 Back     alignment and structure
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
4efa_E233 V-type proton ATPase subunit E; heterotrimer, peri 100.0
4efa_E233 V-type proton ATPase subunit E; heterotrimer, peri 100.0
3v6i_A187 V-type ATP synthase subunit E; peripheral stator s 99.98
3v6i_A187 V-type ATP synthase subunit E; peripheral stator s 99.97
2dm9_A198 V-type ATP synthase subunit E; A-ATPase, structura 99.97
2dm9_A198 V-type ATP synthase subunit E; A-ATPase, structura 99.95
3lg8_A106 A-type ATP synthase subunit E; archaea, peripheral 99.91
3lg8_A106 A-type ATP synthase subunit E; archaea, peripheral 99.89
2kk7_A52 V-type ATP synthase subunit E; A1AO ATP synthase, 96.17
2kk7_A52 V-type ATP synthase subunit E; A1AO ATP synthase, 95.73
1l2p_A61 ATP synthase B chain; alpha helix, hydrolase; 1.55 86.23
1l2p_A61 ATP synthase B chain; alpha helix, hydrolase; 1.55 85.56
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A Back     alignment and structure
Probab=100.00  E-value=5.9e-54  Score=414.88  Aligned_cols=226  Identities=31%  Similarity=0.560  Sum_probs=210.6

Q ss_pred             hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy12089         25 AIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQAR  104 (467)
Q Consensus        25 ~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R  104 (467)
                      +.|+|++|++||++|++||++||++||++|..+|++||+++|.+++++++.+|.+.|+++++++++++++..|++.|++|
T Consensus         6 ~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR   85 (233)
T 4efa_E            6 TALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMR   85 (233)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhC
Q psy12089        105 LKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAG  184 (467)
Q Consensus       105 ~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g  184 (467)
                      +.+|.+|+++|++||+.|.++|.+++.+++.|+.+|.+||.+|+..|++|+++|+|+|.|..+|+++++++..+|+..+|
T Consensus        86 ~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~  165 (233)
T 4efa_E           86 LKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQ  165 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999988


Q ss_pred             Cce--eEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccCCCCccccc
Q psy12089        185 KEV--NLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALS  250 (467)
Q Consensus       185 ~~~--~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r~~~~  250 (467)
                      ..+  .+.++.++.+|++|+|||+|+|.||+|+||||||+||+++|++++|+||+.|||+||||+|||
T Consensus       166 ~~~~~~~~~~~~~l~~~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~r~f~d  233 (233)
T 4efa_E          166 RAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKTRKFFD  233 (233)
T ss_dssp             TSCCCEEEECSSCCCTTTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC-------
T ss_pred             CCCccccccccccCCcccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCCC
Confidence            754  566666666677899999999999999999999999999999999999999999999999986
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A Back     alignment and structure
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Back     alignment and structure
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Back     alignment and structure
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Back     alignment and structure
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Back     alignment and structure
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} Back     alignment and structure
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} Back     alignment and structure
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Back     alignment and structure
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 467
d2dm9a1118 d.81.4.1 (A:81-198) V-type ATP synthase subunit E 1e-24
d2dm9a1118 d.81.4.1 (A:81-198) V-type ATP synthase subunit E 1e-24
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 96.4 bits (240), Expect = 1e-24
 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 113 DHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVL 172
           + + +VL+E ++RL  +++  D+Y + ++ L+ + + +L E  V + S E    ++ + +
Sbjct: 1   EIISSVLEEVKRRLETMSE--DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 173 PNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 232
             +          +V+++L       VDT GG+ +  + G+I+I NT EAR+E    +I 
Sbjct: 59  EEIKSEL-----GDVSIELGE----TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR 109

Query: 233 PDIRVAIFG 241
             I   +FG
Sbjct: 110 STIAKVLFG 118
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
d2dm9a1118 V-type ATP synthase subunit E {Pyrococcus horikosh 99.92
d2dm9a1118 V-type ATP synthase subunit E {Pyrococcus horikosh 99.92
d1l2pa_61 F1F0 ATP synthase subunit B, membrane domain {Esch 91.86
d1l2pa_61 F1F0 ATP synthase subunit B, membrane domain {Esch 89.15
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=9.5e-26  Score=193.07  Aligned_cols=118  Identities=27%  Similarity=0.518  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEec
Q psy12089        113 DHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLD  192 (467)
Q Consensus       113 e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~  192 (467)
                      ++++++|++|.++|.+++++  .|+++|++||.+|+..+++++++|+|+|+|..+++++++++..+|+     ...++++
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~-----~~~~~~~   73 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG-----DVSIELG   73 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT-----TCEEEEC
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC-----CceeEeC
Confidence            47999999999999999864  7999999999999999999999999999999999999998765553     3466665


Q ss_pred             CCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhcc
Q psy12089        193 NDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG  241 (467)
Q Consensus       193 ~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~  241 (467)
                      .    |++|.|||+|+|.||+|+|||||++||+++|++++|+|++.|||
T Consensus        74 ~----~~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG  118 (118)
T d2dm9a1          74 E----TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  118 (118)
T ss_dssp             C----CCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             C----CCccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence            3    67899999999999999999999999999999999999999998
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure