Psyllid ID: psy12090

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA
cccEEEEcccccccccccHHHHHHHHHccccccccccccccccccccEEEEEccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEcccccccccHHHHHHHHHHHHccccccccEEEEccccccccccccccccccHHHHHccccEEEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccEEEEcccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
ccEEEEEEEccccHHccHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEccccccccccccHHcEcccccccccHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHEEccccccccccEcccccccccEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
mreichlqagqcgnqiGAKFWEIisdehgidptgayhgdsdlqLERINVYYneasgskyvprailvdlepgtmdavrsgpfgqifrpdnfvfgqsgagnnwakghytegAELVDAVLDVVRKEAescdclqgfqlthslgggtgsgmGTLMISKIREeypdrimntfsivpspkvsdtvvepynATLSIHQLVentdetfcidnEALYEICFRTLklttptygdlNHLVSAAMSGVttclrfpgrmsmkEVDEQMLNIQNKNASYFVEwipnncktavcdipprgLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEaavddeggeddneegdgda
mreichlqagqcgnqIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNeasgskyvpRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFqlthslgggtgsGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAvddeggeddneegdgda
MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHslgggtgsgmgtlmISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVddeggeddneegdgdA
***ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ**********************
*REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAV****************
MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQ********************
MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA******************
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MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
Q8WP13444 Tubulin beta-8 chain OS=P N/A N/A 0.948 0.792 0.634 1e-144
P30883445 Tubulin beta-4 chain OS=X N/A N/A 0.665 0.555 0.935 1e-132
P68372445 Tubulin beta-4B chain OS= yes N/A 0.665 0.555 0.931 1e-132
P68371445 Tubulin beta-4B chain OS= yes N/A 0.665 0.555 0.931 1e-132
Q3MHM5445 Tubulin beta-4B chain OS= yes N/A 0.665 0.555 0.931 1e-132
P02554445 Tubulin beta chain OS=Sus yes N/A 0.665 0.555 0.927 1e-132
P11833447 Tubulin beta chain OS=Par N/A N/A 0.665 0.552 0.927 1e-132
P32882445 Tubulin beta-2 chain OS=G yes N/A 0.665 0.555 0.923 1e-131
Q3KRE8445 Tubulin beta-2B chain OS= yes N/A 0.665 0.555 0.923 1e-131
Q9CWF2445 Tubulin beta-2B chain OS= yes N/A 0.665 0.555 0.923 1e-131
>sp|Q8WP13|TBB8_PAPHA Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1 Back     alignment and function desciption
 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/427 (63%), Positives = 311/427 (72%), Gaps = 75/427 (17%)

Query: 1   MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREI   QAGQCGNQIGAKFWE+ISDEH ID  G YHGDS LQLERI+VYYNEA G +YV
Sbjct: 1   MREIVLTQAGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSRLQLERIDVYYNEACGGRYV 60

Query: 61  PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
           PRA+LVDLEPGT+D+VRSGPFGQIFRPD+F+FGQ GAGNNWAKGHYTEGAEL+++V+DVV
Sbjct: 61  PRAVLVDLEPGTLDSVRSGPFGQIFRPDSFIFGQCGAGNNWAKGHYTEGAELMESVMDVV 120

Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
           RKEAESCDCLQGFQLTHSLGGGTGSGMGTL++SKIREEYPDRI+NTFSI+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVV 180

Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
           EPYNATLS+HQL+EN DETFCIDNEALY+IC RTLKL TPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLIENADETFCIDNEALYDICSRTLKLPTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFPGR--------------------------------------MSMKEVDEQMLNIQN-- 260
           RFPG+                                      +++ E+ +QM + +N  
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDARNMM 300

Query: 261 -----------KNASYFVEWIP------------NNCKTAVCDIPPRGLKMA-------- 289
                        A+ F   +P            N   +   D  P  +K A        
Sbjct: 301 AACDPRHGRYLTAAAIFRGRMPMREVDEQMFNIQNKNSSYFADWLPHNVKTAVCDIPPRG 360

Query: 290 ----ATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLIS 345
               ATFIGN TAIQELF+R+S+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+S
Sbjct: 361 LKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 346 EYQQYQE 352
           EYQQYQ+
Sbjct: 421 EYQQYQD 427
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Papio hamadryas (taxid: 9557)
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1 Back     alignment and function description
>sp|P68372|TBB4B_MOUSE Tubulin beta-4B chain OS=Mus musculus GN=Tubb4b PE=1 SV=1 Back     alignment and function description
>sp|P68371|TBB4B_HUMAN Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1 Back     alignment and function description
>sp|Q3MHM5|TBB4B_BOVIN Tubulin beta-4B chain OS=Bos taurus GN=TUBB4B PE=2 SV=1 Back     alignment and function description
>sp|P02554|TBB_PIG Tubulin beta chain OS=Sus scrofa PE=1 SV=1 Back     alignment and function description
>sp|P11833|TBB_PARLI Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1 Back     alignment and function description
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q3KRE8|TBB2B_RAT Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1 Back     alignment and function description
>sp|Q9CWF2|TBB2B_MOUSE Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
297289926424 PREDICTED: tubulin beta-2A chain-like [M 0.954 0.834 0.781 1e-180
397471698371 PREDICTED: LOW QUALITY PROTEIN: tubulin 0.954 0.954 0.859 1e-179
432098515345 Tubulin beta-2 chain [Myotis davidii] 0.886 0.953 0.824 1e-167
431913345380 Tubulin beta-2A chain [Pteropus alecto] 0.951 0.928 0.807 1e-166
301782873 750 PREDICTED: tubulin beta-3 chain-like [Ai 0.948 0.469 0.777 1e-165
281339548 739 hypothetical protein PANDA_016558 [Ailur 0.943 0.473 0.778 1e-165
414864263421 TPA: beta tubulin1 [Zea mays] 0.951 0.838 0.712 1e-163
351706837 505 Tubulin beta-2 chain [Heterocephalus gla 0.900 0.661 0.756 1e-162
440896078392 Tubulin beta-1 chain, partial [Bos grunn 0.905 0.857 0.752 1e-159
358378875445 hypothetical protein TRIVIDRAFT_88010 [T 0.991 0.826 0.631 1e-155
>gi|297289926|ref|XP_001119010.2| PREDICTED: tubulin beta-2A chain-like [Macaca mulatta] Back     alignment and taxonomy information
 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 319/408 (78%), Positives = 345/408 (84%), Gaps = 54/408 (13%)

Query: 1   MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
           PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
           RKE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
           EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 R------------------FP------------------------------------GRM 246
           R                  FP                                    GRM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELNQQMFDSXGRM 300

Query: 247 SMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRI 306
           SMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN+TAIQELF+RI
Sbjct: 301 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRI 360

Query: 307 SDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354
           S+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A 
Sbjct: 361 SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 408

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|397471698|ref|XP_003846004.1| PREDICTED: LOW QUALITY PROTEIN: tubulin beta chain [Pan paniscus] Back     alignment and taxonomy information
>gi|432098515|gb|ELK28230.1| Tubulin beta-2 chain [Myotis davidii] Back     alignment and taxonomy information
>gi|431913345|gb|ELK15023.1| Tubulin beta-2A chain [Pteropus alecto] Back     alignment and taxonomy information
>gi|301782873|ref|XP_002926853.1| PREDICTED: tubulin beta-3 chain-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|281339548|gb|EFB15132.1| hypothetical protein PANDA_016558 [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|414864263|tpg|DAA42820.1| TPA: beta tubulin1 [Zea mays] Back     alignment and taxonomy information
>gi|351706837|gb|EHB09756.1| Tubulin beta-2 chain [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|440896078|gb|ELR48111.1| Tubulin beta-1 chain, partial [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|358378875|gb|EHK16556.1| hypothetical protein TRIVIDRAFT_88010 [Trichoderma virens Gv29-8] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
ZFIN|ZDB-GENE-030131-8625445 tubb4b "tubulin, beta 4B class 0.665 0.555 0.874 1.1e-172
UNIPROTKB|F1NYB1444 TUBB3 "Uncharacterized protein 0.665 0.556 0.878 1.4e-172
UNIPROTKB|G1K342445 TUBB3 "Uncharacterized protein 0.665 0.555 0.878 1.4e-172
UNIPROTKB|Q3MHM5445 TUBB4B "Tubulin beta-4B chain" 0.665 0.555 0.878 1.4e-172
UNIPROTKB|L7N0I7445 TUBB4B "Uncharacterized protei 0.665 0.555 0.878 1.4e-172
UNIPROTKB|P68371445 TUBB4B "Tubulin beta-4B chain" 0.665 0.555 0.878 1.4e-172
UNIPROTKB|F2Z571445 TUBB4B "Uncharacterized protei 0.665 0.555 0.878 1.4e-172
MGI|MGI:1915472445 Tubb4b "tubulin, beta 4B class 0.665 0.555 0.878 1.4e-172
ZFIN|ZDB-GENE-040426-2879445 zgc:55461 "zgc:55461" [Danio r 0.665 0.555 0.874 2.3e-172
UNIPROTKB|P02554445 P02554 "Tubulin beta chain" [S 0.665 0.555 0.874 2.3e-172
ZFIN|ZDB-GENE-030131-8625 tubb4b "tubulin, beta 4B class IVb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1180 (420.4 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
 Identities = 216/247 (87%), Positives = 230/247 (93%)

Query:     1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
             MREI HLQAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQL+RINVYYNEA+G KYV
Sbjct:     1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEATGGKYV 60

Query:    61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
             PRA+LVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct:    61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query:   121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
             RKEAESCDCLQGFQLTH              ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct:   121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query:   181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
             EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct:   181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query:   241 RFPGRMS 247
             RFPG+++
Sbjct:   241 RFPGQLN 247
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
UNIPROTKB|F1NYB1 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G1K342 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHM5 TUBB4B "Tubulin beta-4B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0I7 TUBB4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P68371 TUBB4B "Tubulin beta-4B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z571 TUBB4B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1915472 Tubb4b "tubulin, beta 4B class IVB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2879 zgc:55461 "zgc:55461" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P02554 P02554 "Tubulin beta chain" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6B856TBB2B_BOVINNo assigned EC number0.92300.66570.5550yesN/A
Q9YHC3TBB1_GADMONo assigned EC number0.91900.66570.5550N/AN/A
Q4R5B3TBB2A_MACFANo assigned EC number0.91900.66570.5550N/AN/A
Q13885TBB2A_HUMANNo assigned EC number0.91900.66570.5550yesN/A
Q6P9T8TBB4B_RATNo assigned EC number0.92710.66570.5550yesN/A
P09203TBB1_CHICKNo assigned EC number0.91900.66570.5550yesN/A
P32882TBB2_CHICKNo assigned EC number0.92300.66570.5550yesN/A
P04350TBB4A_HUMANNo assigned EC number0.92710.66570.5563yesN/A
P83130TBB2_DROERNo assigned EC number0.90280.66570.5538N/AN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.92300.66570.5563yesN/A
P99024TBB5_MOUSENo assigned EC number0.92300.66570.5563yesN/A
P61857TBB2_DROMENo assigned EC number0.90280.66570.5538noN/A
Q767L7TBB5_PIGNo assigned EC number0.92300.66570.5563yesN/A
P02554TBB_PIGNo assigned EC number0.92710.66570.5550yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.92300.66570.5563yesN/A
Q5R943TBB5_PONABNo assigned EC number0.92300.66570.5563noN/A
P36221TBB1_NOTCONo assigned EC number0.92710.66570.5538N/AN/A
P69897TBB5_RATNo assigned EC number0.92300.66570.5563yesN/A
P61858TBB2_DROHYNo assigned EC number0.90280.66570.5538N/AN/A
P85108TBB2A_RATNo assigned EC number0.91900.66570.5550yesN/A
Q27U48TBB1_GLOMMNo assigned EC number0.92710.66570.5525N/AN/A
P41937TBB4_CAEELNo assigned EC number0.91490.66570.5563yesN/A
P09206TBB3_CHICKNo assigned EC number0.92710.65490.5460yesN/A
P69893TBB5_CRIGRNo assigned EC number0.92300.66570.5563yesN/A
P68372TBB4B_MOUSENo assigned EC number0.93110.66570.5550yesN/A
P69895TBB5_MACMUNo assigned EC number0.92300.66570.5563noN/A
P68371TBB4B_HUMANNo assigned EC number0.93110.66570.5550yesN/A
O44388TBB_TRITRNo assigned EC number0.91490.66570.5563N/AN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.92710.66570.5563yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.92710.66570.5563N/AN/A
O17449TBB1_MANSENo assigned EC number0.93110.66570.5525N/AN/A
Q9NFZ6TBB2_ECHMUNo assigned EC number0.91090.66570.5550N/AN/A
Q24560TBB1_DROMENo assigned EC number0.92710.66570.5525yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.92300.66570.5563yesN/A
P09244TBB7_CHICKNo assigned EC number0.92300.66570.5563yesN/A
P11833TBB_PARLINo assigned EC number0.92710.66570.5525N/AN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.92300.66570.5550yesN/A
Q17299TBB1_CAEBRNo assigned EC number0.90680.66570.5600N/AN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.92300.66570.5550yesN/A
Q91240TBB_PSEAMNo assigned EC number0.91490.66570.5550N/AN/A
Q91575TBB5_XENLANo assigned EC number0.92300.66570.5563N/AN/A
P07437TBB5_HUMANNo assigned EC number0.92300.66570.5563yesN/A
P13602TBB2_XENLANo assigned EC number0.92300.66570.5575N/AN/A
Q3MHM5TBB4B_BOVINNo assigned EC number0.93110.66570.5550yesN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.92710.66570.5563yesN/A
P30883TBB4_XENLANo assigned EC number0.93520.66570.5550N/AN/A
Q7TMM9TBB2A_MOUSENo assigned EC number0.91900.66570.5550yesN/A
Q3KRE8TBB2B_RATNo assigned EC number0.92300.66570.5550yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-156
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 7e-94
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 2e-93
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 9e-90
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 3e-89
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 8e-87
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 6e-85
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-76
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 2e-76
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 2e-76
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-76
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-75
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 2e-74
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 2e-73
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-61
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 2e-58
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 3e-54
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-34
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 8e-32
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 2e-23
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 3e-23
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-22
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-12
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 3e-12
cd06060493 cd06060, misato, Human Misato shows similarity wit 2e-08
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 2e-08
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 6e-08
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 3e-07
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 2e-06
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 2e-06
cd02191303 cd02191, FtsZ, FtsZ is a GTPase that is similar to 0.002
COG0206338 COG0206, FtsZ, Cell division GTPase [Cell division 0.002
COG2384226 COG2384, COG2384, Predicted SAM-dependent methyltr 0.002
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  563 bits (1453), Expect = 0.0
 Identities = 221/243 (90%), Positives = 235/243 (96%)

Query: 2   REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
           REI H+QAGQCGNQIGAKFWE+ISDEHG+DPTG Y GDSDLQLERINVY+NEASG KYVP
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60

Query: 62  RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVR 121
           RAILVDLEPGTMD+VRSGPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVR
Sbjct: 61  RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120

Query: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 181
           KEAESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIM TFS+ PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180

Query: 182 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 241
           PYNATLS+HQLVEN+DETFCIDNEALY+ICFRTLKLT PTYGDLNHLVSA MSG+TTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240

Query: 242 FPG 244
           FPG
Sbjct: 241 FPG 243

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
KOG1374|consensus448 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376|consensus407 100.0
KOG1375|consensus369 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.98
KOG2530|consensus483 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.96
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.94
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.93
PRK13018378 cell division protein FtsZ; Provisional 99.92
PRK09330384 cell division protein FtsZ; Validated 99.89
PF14881180 Tubulin_3: Tubulin domain 99.87
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.47
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.39
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.08
PF13809345 Tubulin_2: Tubulin like 98.03
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 90.03
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-117  Score=832.37  Aligned_cols=360  Identities=55%  Similarity=1.017  Sum_probs=350.7

Q ss_pred             CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090          1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP   80 (371)
Q Consensus         1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~   80 (371)
                      ||||||||+||||||||.+||+++|+||+|.++|.+....+...++.++||+|++.|+|+||||+||+||+||+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            99999999999999999999999999999999999877667777899999999999999999999999999999999999


Q ss_pred             CCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCC
Q psy12090         81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYP  160 (371)
Q Consensus        81 ~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp  160 (371)
                      |+.+|+|+|++.+++|+|||||+|+|+.|+++.+.++|+|||++|.||.||||+++||+|||||||+|+.|+|+|+++||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcccc
Q psy12090        161 DRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL  240 (371)
Q Consensus       161 ~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (371)
                      ||.+.+|+|+|.++.++++|||||++|+++.|.++||+++++||++|++||.+.|++.+|+|.++|++||++++++|+++
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl  240 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL  240 (443)
T ss_pred             hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence            99999999999998999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC---------------------------------------------------------------------------C
Q psy12090        241 RFPG---------------------------------------------------------------------------R  245 (371)
Q Consensus       241 rf~~---------------------------------------------------------------------------~  245 (371)
                      ||||                                                                           +
T Consensus       241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~  320 (443)
T COG5023         241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD  320 (443)
T ss_pred             ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence            9999                                                                           6


Q ss_pred             CChHHHHHHHHHhhhcccccceeccCCCccceecCCCC---CCccceeEEeccchHHHHHHHHHHHhHhhhcccccceec
Q psy12090        246 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHW  322 (371)
Q Consensus       246 ~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~  322 (371)
                      +++++++.++.+++.|+..+|++|+|+++++++|+.+|   .+.++++|+|+|+|+|...|+|+.++|++||+|||||||
T Consensus       321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw  400 (443)
T COG5023         321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW  400 (443)
T ss_pred             CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence            78999999999999999999999999999999999999   688999999999999999999999999999999999999


Q ss_pred             cccCCCChhhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy12090        323 YLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGG  360 (371)
Q Consensus       323 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~  360 (371)
                      |+++||||+||.||++.+++|..+|++++++..+++++
T Consensus       401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~  438 (443)
T COG5023         401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE  438 (443)
T ss_pred             HhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence            99999999999999999999999999998888766544

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-133
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-54
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-133
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-54
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-133
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 5e-54
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-132
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-54
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-132
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-54
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-131
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-54
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-131
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-54
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-131
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-54
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-131
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-54
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-104
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 9e-45
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 5e-63
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-62
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 6e-55
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 2e-17
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 6e-55
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-17
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 8e-55
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 3e-17
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-54
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 2e-17
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-54
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 2e-17
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-54
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-17
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 1e-54
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 2e-17
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-54
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-17
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-54
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-17
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 5e-54
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 6e-19
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 2e-52
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 5e-07
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 1e-48
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-06
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 1e-48
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-06
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 6e-40
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 2e-09
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  470 bits (1209), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 216/247 (87%), Positives = 231/247 (93%)
Query: 1   MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61  PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
           PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
           RKE+ESCDCLQGFQLTH              ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
           EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
           RFPG+++
Sbjct: 241 RFPGQLN 247
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-164
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 3e-59
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 1e-164
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 2e-53
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-163
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 3e-69
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-161
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-59
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-160
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 3e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 9e-07
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 2e-04
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
 Score =  466 bits (1202), Expect = e-164
 Identities = 97/248 (39%), Positives = 159/248 (64%), Gaps = 4/248 (1%)

Query: 2   REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
           REI  LQ GQCGNQIG +FW+ +  EHGI P       +    +R +V++ +A    Y+P
Sbjct: 3   REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62

Query: 62  RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
           RA+L+DLEP  + ++ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 63  RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121

Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSP-KVSDT 178
           + +EA+  D L+GF L HS+ GGTGSG+G+ ++ ++ + YP +++ T+S+ P+  ++SD 
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181

Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
           VV+PYN+ L++ +L +N D    +DN AL  I    L +  P++  +N LVS  MS  TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241

Query: 239 CLRFPGRM 246
            LR+PG M
Sbjct: 242 TLRYPGYM 249
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.98
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.97
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.75
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.39
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 97.31
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=8.9e-109  Score=821.89  Aligned_cols=360  Identities=89%  Similarity=1.433  Sum_probs=348.3

Q ss_pred             CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090          1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP   80 (371)
Q Consensus         1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~   80 (371)
                      |||||+||+||||||||.+||+++|+||+|+++|.+..+.+.+.+++++||+|+..++|+||||||||||+||+++++++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            99999999999999999999999999999999999987777777899999999999999999999999999999999999


Q ss_pred             CCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCC
Q psy12090         81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYP  160 (371)
Q Consensus        81 ~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp  160 (371)
                      ++.+|+|++++++++|+|||||+|||+.|+++.++++|+||+++|.||.||||+++||+|||||||+|+.|++.|+++||
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~  160 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCT
T ss_pred             ccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcccc
Q psy12090        161 DRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL  240 (371)
Q Consensus       161 ~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (371)
                      ++.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++++++|+++
T Consensus       161 kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~sl  240 (445)
T 3ryc_B          161 DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (445)
T ss_dssp             TSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhcccc
Confidence            99999999999987789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC---------------------------------------------------------------------------C
Q psy12090        241 RFPG---------------------------------------------------------------------------R  245 (371)
Q Consensus       241 rf~~---------------------------------------------------------------------------~  245 (371)
                      ||||                                                                           +
T Consensus       241 Rf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG~  320 (445)
T 3ryc_B          241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGR  320 (445)
T ss_dssp             HSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEES
T ss_pred             ccCcccccCHHHHhhcccCCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeecC
Confidence            9999                                                                           6


Q ss_pred             CChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHhhhcccccceecccc
Q psy12090        246 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLG  325 (371)
Q Consensus       246 ~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~  325 (371)
                      ++++++++++.+++.+++.+|++|+|+++|+++|++||.+.++++++|+|+|+|.++|+++.+||++||+||||||||++
T Consensus       321 v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp~~~~~s~~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~~  400 (445)
T 3ryc_B          321 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG  400 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCCTTCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHT
T ss_pred             CChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCCcccceeeeeecCcHHHHHHHHHHHHHHHhhhhcccchhhhhc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy12090        326 EGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGG  360 (371)
Q Consensus       326 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~  360 (371)
                      |||||+||.||+++|++|+++|+++.....|++++
T Consensus       401 eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~  435 (445)
T 3ryc_B          401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGE  435 (445)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC---
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence            99999999999999999999999998887665443
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 371
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-138
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-126
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-118
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 6e-52
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 2e-47
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 5e-45
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 2e-05
d1w5fa1194 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th 5e-05
d2vapa1209 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar 3e-04
d1rq2a1198 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc 6e-04
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  390 bits (1004), Expect = e-138
 Identities = 228/243 (93%), Positives = 241/243 (99%)

Query: 1   MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
           PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
           RKE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
           EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFP 243
           RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194 Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209 Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.94
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.94
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.93
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.73
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.72
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.72
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.67
d1pdoa_129 IIA domain of mannose transporter, IIA-Man {Escher 82.53
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.9e-80  Score=569.40  Aligned_cols=243  Identities=94%  Similarity=1.508  Sum_probs=237.3

Q ss_pred             CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090          1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP   80 (371)
Q Consensus         1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~   80 (371)
                      |||||+||+||||||||.+||+++++||+++++|.+..+.+...+++++||++...++|+||||+||+||+||+++++++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            99999999999999999999999999999999998877666777889999999999999999999999999999999999


Q ss_pred             CCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCC
Q psy12090         81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYP  160 (371)
Q Consensus        81 ~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp  160 (371)
                      ++.+|+|++++++++|+|||||+|||..|+++.++++|.|||++|+||++|||+++||+|||||||+|++|+|.|+|+||
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp  160 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCS
T ss_pred             cccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcccc
Q psy12090        161 DRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL  240 (371)
Q Consensus       161 ~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (371)
                      ++.+++++|+|++..+++++||||++|+|++|.+++|++++|||++|+++|.+.+++..|+|++||++||++|+++|+++
T Consensus       161 ~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~  240 (243)
T d1tubb1         161 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (243)
T ss_dssp             SSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHHHHHTBT
T ss_pred             cceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            99999999999977799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy12090        241 RFP  243 (371)
Q Consensus       241 rf~  243 (371)
                      |||
T Consensus       241 RFP  243 (243)
T d1tubb1         241 RFP  243 (243)
T ss_dssp             TBS
T ss_pred             cCC
Confidence            998
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]} Back     information, alignment and structure