Psyllid ID: psy12096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MPPFDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGKT
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccccccccccccHHHHccccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccEEEcEEEcccccccEEEEEEEEcEEEcccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccEEEEEEEEEcccccccccccccccccccccHHHccccccccccccccccccccccEEEEEEcccccEEEEEEEEEccccccccEEEEcccccccccEEEEccccHHHHcccEEEEEEEEcccccccEEEEEEEEEHHHccccccEEEEEEcEcccccccccccc
Coil and Loop (DISEMBL)
MPPFDKREVVQEVLNVISfnastlpplvadsikrktqatttttplpedeeedlEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAeetgmppwVVVSIFIERQilegvpyadAMNKTLVFAIFdfdrfskhdqiGEVKVALCQIDLAQTIEEWRELQsvegeggqigkt
Flexible Loop (DISEMBL)
MPPFDKREVVQEVLNVIsfnastlpplvadsikrktqatttttplpedeeedLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRelqsvegeggqigkt
Low Complexity Region (SEG)
MPPFDKREVVQEVLNVISFNASTLPPLVADSIKRKTQAtttttplpedeeedlemteAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGKT
Disordered region (IsUnstruct)
********VVQEVLNVISFNASTLPPL***************************************************************ETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL*************
Disordered Region (DISOPRED)
*********VQEVLN*********************************EEEDLEMTEAFEDVSEELSSTVASIKKEIANE***********TGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW****************
Disordered Region (DISEMBL)
********VVQEVLNVISFNASTLPPLVADSIKR*********************TEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ************
Disordered Region (DISPRO)
MPPFDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTTTP****************DVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPFDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
P21521	474	Synaptotagmin 1 OS=Drosop	yes	N/A	0.502	0.183	0.645	8e-27
P46097	422	Synaptotagmin-2 OS=Mus mu	yes	N/A	0.317	0.130	0.654	2e-14
Q8N9I0	419	Synaptotagmin-2 OS=Homo s	yes	N/A	0.317	0.131	0.654	3e-14
P29101	422	Synaptotagmin-2 OS=Rattus	yes	N/A	0.317	0.130	0.654	3e-14
P41823	428	Synaptotagmin-1 OS=Aplysi	N/A	N/A	0.317	0.128	0.581	8e-14
P47191	424	Synaptotagmin-1 OS=Gallus	no	N/A	0.317	0.129	0.6	1e-13
P24506	439	Synaptotagmin-B OS=Diplob	N/A	N/A	0.317	0.125	0.563	4e-13
Q5R4J5	419	Synaptotagmin-1 OS=Pongo	yes	N/A	0.317	0.131	0.581	6e-13
Q60HC0	419	Synaptotagmin-1 OS=Macaca	N/A	N/A	0.317	0.131	0.581	6e-13
P48018	422	Synaptotagmin-1 OS=Bos ta	no	N/A	0.317	0.130	0.581	7e-13

>sp|P21521|SY65_DROME Synaptotagmin 1 OS=Drosophila melanogaster GN=Syt1 PE=1 SV=2

 Score =  119 bits (299), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 68/93 (73%), Gaps = 6/93 (6%)

Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K   KV  +T  P      +F E    + +PYADAMNKTLVFAIFDFDRFSKHD
Sbjct: 237 LPDKKKKFETKVHRKTLSP------VFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHD 290

Query: 137 QIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ 169
           QIGEVKV LC IDLAQTIEEWR+L SVEGEGGQ
Sbjct: 291 QIGEVKVPLCTIDLAQTIEEWRDLVSVEGEGGQ 323

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.
Drosophila melanogaster (taxid: 7227)

>sp|P46097|SYT2_MOUSE Synaptotagmin-2 OS=Mus musculus GN=Syt2 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct: 215 VPYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Mus musculus (taxid: 10090)

>sp|Q8N9I0|SYT2_HUMAN Synaptotagmin-2 OS=Homo sapiens GN=SYT2 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct: 212 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Homo sapiens (taxid: 9606)

>sp|P29101|SYT2_RAT Synaptotagmin-2 OS=Rattus norvegicus GN=Syt2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct: 215 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Rattus norvegicus (taxid: 10116)

>sp|P41823|SY65_APLCA Synaptotagmin-1 OS=Aplysia californica GN=SYT1 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPYA+  +K L FA++DFDRFSKHDQIG+V+V L  IDL + +E+W++LQS + E
Sbjct: 226 VPYAEVGSKILTFAVYDFDRFSKHDQIGQVQVPLNSIDLGRVVEDWKDLQSPDTE 280

Acts as inhibitor of neurotransmitter release. Overexpression leads to a decrease in the amplitude of the excitatory postsynaptic potential in dissected cholinergic and glutaminergic neurons while depletion with antisense oligonucleotides leads to an increase. Overexpression of isoform 1 blocks the reversal of synaptic depression by serotonin in sensory neurons.

Aplysia californica (taxid: 6500)

>sp|P47191|SYT1_CHICK Synaptotagmin-1 OS=Gallus gallus GN=SYT1 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY++   KTLV A++DFDRFSKHD IGE KVA+  +D     EEWR+LQS E E
Sbjct: 217 VPYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTVDFGHVTEEWRDLQSAEKE 271

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Gallus gallus (taxid: 9031)

>sp|P24506|SY62_DIPOM Synaptotagmin-B OS=Diplobatis ommata GN=P65-B PE=1 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY +   KTL+ A++DFDRFSKHD IG+V V + ++DL Q +EEWR+L+S E E
Sbjct: 232 VPYQELGGKTLMMAVYDFDRFSKHDCIGQVTVLMTKVDLGQQLEEWRDLESAEKE 286

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Discopyge ommata (taxid: 7785)

>sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E E
Sbjct: 212 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Pongo abelii (taxid: 9601)

>sp|Q60HC0|SYT1_MACFA Synaptotagmin-1 OS=Macaca fascicularis GN=SYT1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E E
Sbjct: 212 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Macaca fascicularis (taxid: 9541)

>sp|P48018|SYT1_BOVIN Synaptotagmin-1 OS=Bos taurus GN=SYT1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E E
Sbjct: 215 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
12658419	429	synaptotagmin [Manduca sexta]	0.514	0.207	0.673	8e-29
332018156	436	Synaptotagmin 1 [Acromyrmex echinatior]	0.404	0.160	0.873	1e-28
383860584	434	PREDICTED: synaptotagmin 1-like [Megachi	0.410	0.163	0.859	1e-28
307206115	429	Synaptotagmin [Harpegnathos saltator]	0.410	0.165	0.859	2e-28
193713831	466	PREDICTED: synaptotagmin 1 isoform 1 [Ac	0.410	0.152	0.845	5e-28
288869516	454	synaptotagmin 1 [Nasonia vitripennis]	0.404	0.154	0.857	6e-28
270006365	444	synaptotagmin [Tribolium castaneum]	0.520	0.202	0.666	6e-28
357626340	419	synaptotagmin I [Danaus plexippus]	0.520	0.214	0.666	6e-28
225543472	444	synaptotagmin 1 [Tribolium castaneum] gi	0.520	0.202	0.666	6e-28
237648990	431	synaptotagmin I [Bombyx mori] gi|2237024	0.520	0.208	0.666	9e-28

>gi|12658419|gb|AAK01129.1|AF331039_1 synaptotagmin [Manduca sexta]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 73/95 (76%), Gaps = 6/95 (6%)

Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K   KV  +T  P      +F E  + + VPYADAMNKTLVFAIFDFDRFSKHD
Sbjct: 198 LPDKKKKFETKVHRKTLSP------VFNETFVFKNVPYADAMNKTLVFAIFDFDRFSKHD 251

Query: 137 QIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIG 171
           QIGEVKV LCQ+DLAQTIEEWRELQSVEGEGGQ+G
Sbjct: 252 QIGEVKVPLCQVDLAQTIEEWRELQSVEGEGGQLG 286

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018156|gb|EGI58762.1| Synaptotagmin 1 [Acromyrmex echinatior]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 63/71 (88%)

Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           IF E    +GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQ
Sbjct: 221 IFNETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQ 280

Query: 162 SVEGEGGQIGK 172
           SVEGEGGQ  K
Sbjct: 281 SVEGEGGQDNK 291

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860584|ref|XP_003705769.1| PREDICTED: synaptotagmin 1-like [Megachile rotundata]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 63/71 (88%)

Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           +F E    +GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQ
Sbjct: 219 VFNETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQ 278

Query: 162 SVEGEGGQIGK 172
           SVEGEGGQ  K
Sbjct: 279 SVEGEGGQDNK 289

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206115|gb|EFN84195.1| Synaptotagmin [Harpegnathos saltator]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 63/71 (88%)

Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           IF E    +GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQ
Sbjct: 214 IFNETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQ 273

Query: 162 SVEGEGGQIGK 172
           SVEGEGGQ  K
Sbjct: 274 SVEGEGGQDNK 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713831|ref|XP_001944713.1| PREDICTED: synaptotagmin 1 isoform 1 [Acyrthosiphon pisum] gi|328711543|ref|XP_003244566.1| PREDICTED: synaptotagmin 1 isoform 2 [Acyrthosiphon pisum]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 63/71 (88%)

Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           +F E    +G+PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQ
Sbjct: 252 VFNETFQFKGIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQ 311

Query: 162 SVEGEGGQIGK 172
           SVEGEGGQ  K
Sbjct: 312 SVEGEGGQDNK 322

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288869516|ref|NP_001165865.1| synaptotagmin 1 [Nasonia vitripennis]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 62/70 (88%)

Query: 103 FIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           F E    +GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQS
Sbjct: 240 FNETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQS 299

Query: 163 VEGEGGQIGK 172
           VEGEGGQ  K
Sbjct: 300 VEGEGGQDNK 309

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006365|gb|EFA02813.1| synaptotagmin [Tribolium castaneum]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 72/96 (75%), Gaps = 6/96 (6%)

Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K   KV  +T  P      +F E  + + +PYADAMNKTLVFAIFDFDRFSKHD
Sbjct: 211 LPDKKKKFETKVHRKTLSP------VFNETFVFKNIPYADAMNKTLVFAIFDFDRFSKHD 264

Query: 137 QIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172
           QIGEVKV LCQIDLAQTIEEWRELQSVEGEGGQ  K
Sbjct: 265 QIGEVKVPLCQIDLAQTIEEWRELQSVEGEGGQENK 300

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626340|gb|EHJ76466.1| synaptotagmin I [Danaus plexippus]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 72/96 (75%), Gaps = 6/96 (6%)

Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K   KV  +T  P      +F E  + + VPYADAMNKTLVFAIFDFDRFSKHD
Sbjct: 185 LPDKKKKFETKVHRKTLNP------VFNETFVFKSVPYADAMNKTLVFAIFDFDRFSKHD 238

Query: 137 QIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172
           QIGEVKV LCQ+DLAQTIEEWRELQSVEGEGGQ  K
Sbjct: 239 QIGEVKVPLCQVDLAQTIEEWRELQSVEGEGGQDNK 274

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225543472|ref|NP_001139384.1| synaptotagmin 1 [Tribolium castaneum] gi|223702450|gb|ACN21656.1| synaptotagmin I isoform A [Tribolium castaneum]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 72/96 (75%), Gaps = 6/96 (6%)

Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K   KV  +T  P      +F E  + + +PYADAMNKTLVFAIFDFDRFSKHD
Sbjct: 211 LPDKKKKFETKVHRKTLSP------VFNETFVFKNIPYADAMNKTLVFAIFDFDRFSKHD 264

Query: 137 QIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172
           QIGEVKV LCQIDLAQTIEEWRELQSVEGEGGQ  K
Sbjct: 265 QIGEVKVPLCQIDLAQTIEEWRELQSVEGEGGQENK 300

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237648990|ref|NP_001153672.1| synaptotagmin I [Bombyx mori] gi|223702452|gb|ACN21657.1| synaptotagmin I isoform A [Bombyx mori]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 72/96 (75%), Gaps = 6/96 (6%)

Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K   KV  +T  P      +F E  + + VPYADAMNKTLVFAIFDFDRFSKHD
Sbjct: 197 LPDKKKKFETKVHRKTLSP------VFNETFVFKNVPYADAMNKTLVFAIFDFDRFSKHD 250

Query: 137 QIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172
           QIGEVKV LCQ+DLAQTIEEWRELQSVEGEGGQ  K
Sbjct: 251 QIGEVKVPLCQVDLAQTIEEWRELQSVEGEGGQDNK 286

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
FB|FBgn0004242	474	Syt1 "Synaptotagmin 1" [Drosop	0.497	0.181	0.678	1.2e-24
UNIPROTKB|Q8N9I0	419	SYT2 "Synaptotagmin-2" [Homo s	0.317	0.131	0.654	7.5e-16
MGI|MGI:99666	422	Syt2 "synaptotagmin II" [Mus m	0.317	0.130	0.654	1.5e-15
UNIPROTKB|P47191	424	SYT1 "Synaptotagmin-1" [Gallus	0.369	0.150	0.553	1.7e-15
RGD|3804	422	Syt2 "synaptotagmin II" [Rattu	0.317	0.130	0.654	2e-15
UNIPROTKB|P29101	422	Syt2 "Synaptotagmin-2" [Rattus	0.317	0.130	0.654	2e-15
UNIPROTKB|F1S5A0	362	SYT2 "Uncharacterized protein"	0.317	0.151	0.654	2.3e-15
ZFIN|ZDB-GENE-060503-315	430	syt2a "synaptotagmin IIa" [Dan	0.317	0.127	0.563	2.4e-15
UNIPROTKB|G5E6N8	417	SYT2 "Uncharacterized protein"	0.317	0.131	0.654	3.1e-15
UNIPROTKB|J3KQA0	419	SYT1 "Synaptotagmin I, isoform	0.369	0.152	0.538	1.9e-14

FB|FBgn0004242 Syt1 "Synaptotagmin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/87 (67%), Positives = 67/87 (77%)

Query:    84 IADKVAE-ETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 142
             + DK  + ET +    +  +F E    + +PYADAMNKTLVFAIFDFDRFSKHDQIGEVK
Sbjct:   237 LPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 296

Query:   143 VALCQIDLAQTIEEWRELQSVEGEGGQ 169
             V LC IDLAQTIEEWR+L SVEGEGGQ
Sbjct:   297 VPLCTIDLAQTIEEWRDLVSVEGEGGQ 323

GO:0007269 "neurotransmitter secretion" evidence=NAS;IMP

GO:0016192 "vesicle-mediated transport" evidence=IMP;TAS

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0030285 "integral to synaptic vesicle membrane" evidence=NAS

GO:0005509 "calcium ion binding" evidence=ISS;IDA

GO:0006887 "exocytosis" evidence=NAS

GO:0005544 "calcium-dependent phospholipid binding" evidence=TAS

GO:0048489 "synaptic vesicle transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=ISS;IDA;NAS

GO:0016020 "membrane" evidence=IEA;NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0048488 "synaptic vesicle endocytosis" evidence=IDA;IMP

GO:0005215 "transporter activity" evidence=IEA

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IDA

GO:0060024 "rhythmic synaptic transmission" evidence=IDA

UNIPROTKB|Q8N9I0 SYT2 "Synaptotagmin-2" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct:   212 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 266

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:99666 Syt2 "synaptotagmin II" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct:   215 VPYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 269

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P47191 SYT1 "Synaptotagmin-1" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query:   102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
             +F E Q    VPY++   KTLV A++DFDRFSKHD IGE KVA+  +D     EEWR+LQ
Sbjct:   208 VFNE-QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTVDFGHVTEEWRDLQ 266

Query:   162 SVEGE 166
             S E E
Sbjct:   267 SAEKE 271

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

RGD|3804 Syt2 "synaptotagmin II" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct:   215 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 269

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA;ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA;ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0019905 "syntaxin binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=TAS

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|P29101 Syt2 "Synaptotagmin-2" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct:   215 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 269

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1S5A0 SYT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct:   155 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 209

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ZFIN|ZDB-GENE-060503-315 syt2a "synaptotagmin IIa" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             +P+ +   KTLV +++DFDRFSKHD IGEVK+ +  +DLAQ IE+WR+L S E E
Sbjct:   220 IPFTEMGGKTLVMSVYDFDRFSKHDVIGEVKIPMNTLDLAQPIEQWRDLDSAEKE 274

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|G5E6N8 SYT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query:   112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
             VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E E
Sbjct:   210 VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKE 264

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|J3KQA0 SYT1 "Synaptotagmin I, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query:   102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
             +F E Q    VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQ
Sbjct:   203 VFNE-QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 261

Query:   162 SVEGE 166
             S E E
Sbjct:   262 SAEKE 266

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P21521	SY65_DROME	No assigned EC number	0.6451	0.5028	0.1835	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	5e-25
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-13
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-08
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	5e-08
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-06
cd00030	102	cd00030, C2, C2 domain	7e-05
smart00239	101	smart00239, C2, Protein kinase C conserved region	6e-04
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	0.001

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 93.1 bits (232), Expect = 5e-25
 Identities = 32/51 (62%), Positives = 41/51 (80%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           VPY++  NKTLVF+++DFDRFSKHD IGEV+V L  +DL    EEWR+L+S
Sbjct: 74  VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           EG PY     + L   + D+DRFS++D IGEV + L ++DL +    W++L+
Sbjct: 73  EGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           V + +   +TL  +++D DRFS+H  IG V   L  +DL +    WR+L+
Sbjct: 73  VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 19/52 (36%), Positives = 36/52 (69%)

Query: 111 GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
            VP  +   +TL   ++DFD+FS+ + IG V++ L ++DL++ ++ WR++QS
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 111 GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQS 162
           G+PY    + +L FA+  FDR+S+ D IGEV   L   DL     +   RE+Q 
Sbjct: 75  GIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 113 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-DLAQTIEEWREL 160
           P  D  + TL   ++D DRFSK D +GEV++ L ++ D  +  E W  L
Sbjct: 54  PVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 157
                     L   ++D DRF + D IG+V + L  + L    E+ 
Sbjct: 56  FEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           + ++    +TL  +++ +DRF ++  +GEV++ L   +     EE   L 
Sbjct: 76  ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.94
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.9
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.89
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.88
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.88
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.88
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.88
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.87
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.86
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.86
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.86
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.85
KOG1028|consensus	421		99.85
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.84
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.84
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.83
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.83
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.82
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.82
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.81
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.81
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.81
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.8
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.8
KOG1028|consensus	421		99.79
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.79
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.78
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.78
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.78
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.78
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.77
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.77
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.75
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.73
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.73
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.72
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.72
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.72
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.71
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.7
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.7
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.69
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.69
KOG0905|consensus	1639		99.68
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.68
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.68
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.67
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.67
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.66
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.65
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.65
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.65
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.64
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.64
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.64
KOG1030|consensus	168		99.64
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.63
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.63
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.63
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.63
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.63
KOG0696|consensus	683		99.62
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.62
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.62
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.61
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.6
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.6
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.59
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.58
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.58
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.58
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.57
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.55
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.55
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.53
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.53
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.51
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.51
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.5
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.5
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.5
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.5
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.47
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.46
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.45
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.45
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.44
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.43
PLN03008	868	Phospholipase D delta	99.41
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.34
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.32
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.24
PLN02223	537	phosphoinositide phospholipase C	99.2
PLN02952	599	phosphoinositide phospholipase C	99.18
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.16
KOG2059|consensus	800		99.15
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.11
KOG1013|consensus	362		99.09
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.08
PLN02230	598	phosphoinositide phospholipase C 4	99.06
KOG1011|consensus	1283		99.04
PLN02222	581	phosphoinositide phospholipase C 2	99.02
KOG2059|consensus	800		98.97
KOG1328|consensus	1103		98.93
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.89
PLN02228	567	Phosphoinositide phospholipase C	98.89
KOG0169|consensus	746		98.88
KOG1328|consensus	1103		98.86
KOG1264|consensus	1267		98.67
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.59
KOG1013|consensus	362		98.55
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.4
KOG1031|consensus	1169		98.4
PLN02270	808	phospholipase D alpha	98.36
KOG1011|consensus	1283		98.36
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.24
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.01
KOG2060|consensus	405		97.98
PLN02964	644	phosphatidylserine decarboxylase	97.65
PLN02352	758	phospholipase D epsilon	97.53
KOG1326|consensus	1105		97.46
KOG1327|consensus	529		97.32
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.53
KOG1265|consensus	1189		96.14
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.98
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.95
KOG1326|consensus	1105		95.83
KOG3837|consensus	523		95.46
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.28
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.26
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.21
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	95.11
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.18
PF15627	156	CEP76-C2: CEP76 C2 domain	94.07
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.0
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.67
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	92.54
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	91.02
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	90.75
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.48
KOG1327|consensus	529		87.08
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	86.95
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	82.99

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.94  E-value=1.9e-26  Score=170.93  Aligned_cols=109  Identities=17%  Similarity=0.364  Sum_probs=97.1

Q ss_pred             cceecchheecccccceeeEEeeec----cCCCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCcccCCCCE
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK----EIANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKT  121 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~----~~~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~  121 (173)
                      ++|++++.|.....+|.+.++.++.    +.+|||||++     ++.+++|+++++|+||+|||+|.|. |+.+++.+.+
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~t   79 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEESLDGT   79 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHhCCcE
Confidence            4689999999999999877765532    3479999998     3358899999999999999999999 9999999999


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096        122 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus       122 L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      |.|+|||+|++++|++||++.++|++++...+..+|.+|
T Consensus        80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          80 LTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            999999999999999999999999998777788999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.90  E-value=2.5e-23  Score=154.87  Aligned_cols=111  Identities=20%  Similarity=0.307  Sum_probs=97.8

Q ss_pred             ccceecchheecccccceeeEEeee--------ccCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      +|+|++++.|......|.+.|+.++        .+..||||+++   .   ..++||+++++++||+|||+|.|. ++.+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~   79 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VERE   79 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHH
Confidence            4899999999998888887776653        14579999998   1   346899999999999999999999 9888


Q ss_pred             cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCc
Q psy12096        116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  161 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~  161 (173)
                      ++....|.|+|||+|.++++++||++.++|..+...+....||+|+
T Consensus        80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            8888899999999999999999999999999998887778999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.89  E-value=8.6e-23  Score=152.21  Aligned_cols=110  Identities=17%  Similarity=0.315  Sum_probs=97.4

Q ss_pred             cceecchheecccccceeeEEeee--------ccCCCccEEEe----c--CeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA----D--KVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~----~--~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      |+|++++.|......|.+.|+.++        .+..||||+++    .  ..++||+++++++||+|||+|.|. |+.++
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~   80 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQ   80 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHH
Confidence            889999999988888887776553        13579999998    1  347899999999999999999999 98888


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  161 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~  161 (173)
                      +....|.|.|||+|.++++++||++.++|.++...+..+.|++|+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            878899999999999999999999999999999888889999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=2e-22  Score=154.60  Aligned_cols=113  Identities=17%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             ccceecchheecccccceeeEEeeec--------cCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      .|+|++++.|.  ...|.+.|+.++.        +..|||||++   .+   .++||+++++|+||+|||+|.|. |+  
T Consensus        17 ~G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v~--   91 (146)
T cd04028          17 MGDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-VS--   91 (146)
T ss_pred             cceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-Ec--
Confidence            49999999994  4567666655421        2369999999   22   48999999999999999999999 87  


Q ss_pred             cCCCCEEEEEEE-EcCCCCCCceeEEEEEeCCccccccccceeEeCccCCcccc
Q psy12096        116 DAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG  168 (173)
Q Consensus       116 ~l~~~~L~~~V~-D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~~  168 (173)
                       +.+..|.|+|| |+++++++++||++.|+|+++...+....||+|.+...+.+
T Consensus        92 -l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~~~  144 (146)
T cd04028          92 -PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSLVD  144 (146)
T ss_pred             -CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccccC
Confidence             56779999999 69999999999999999999988888889999998866543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.88  E-value=1.2e-22  Score=151.79  Aligned_cols=108  Identities=13%  Similarity=0.211  Sum_probs=94.9

Q ss_pred             ceecchheecccccceeeEEeeec-------cCCCccEEEe----c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         52 DLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----D---KVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        52 ~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      +|++++.|....++|.+.|..++.       +..|||||++    .   +.++||+++++++||+|||+|.|+ |+.+++
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L   80 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKL   80 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHh
Confidence            688999999999998877766532       3469999999    2   358999999999999999999999 999999


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc-ccceeEeC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWREL  160 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~-~~~~W~~L  160 (173)
                      .+++|.|+|||+++++++++||++.|+|.+++... ....||+|
T Consensus        81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999999999999997664 46789986

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.88  E-value=2.2e-22  Score=149.74  Aligned_cols=112  Identities=21%  Similarity=0.318  Sum_probs=99.0

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      .|+|++++.|.....+|.+.|+.++.       +..||||+++    .+.++||+++++ +||+|||+|.|++++.+++.
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~   80 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELN   80 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhc
Confidence            48999999999999999887776542       3468999987    456899999988 99999999999867778888


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      +.+|.|+|||++.++++++||++.++|+.+........|++|+|
T Consensus        81 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          81 NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            89999999999999999999999999999988888899999986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.88  E-value=2.5e-22  Score=149.09  Aligned_cols=108  Identities=19%  Similarity=0.304  Sum_probs=91.9

Q ss_pred             ccceecchheecccccceeeEEeeec------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEeccc-Cccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGV-PYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV-~~~~  116 (173)
                      +|+|++++.|.  ...|.+.|+.++.      +..||||+++      ...++||+++++++||.|||+|.|+ + +..+
T Consensus         1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~-~~~~~~   77 (122)
T cd08381           1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYD-GLPVED   77 (122)
T ss_pred             CCeEEEEEEEe--CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEe-cCChHH
Confidence            37899999999  4556666555432      3579999998      2357999999999999999999999 6 7677


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      +....|.|.|||+|.++++++||++.++|.++...+..+.||+|
T Consensus        78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            77889999999999999999999999999999877777899998

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.88  E-value=2.2e-22  Score=150.86  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=95.5

Q ss_pred             cceecchheecccccceeeEEeeec--------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      |+|++++.|....++|.+.|..++.        +..|||||++      ...++||+++++++||+|||+|.|. |+..+
T Consensus         2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~~   80 (128)
T cd08392           2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEADL   80 (128)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHHH
Confidence            7899999999988888877765531        4569999998      2347899999999999999999999 99888


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc---ccceeEeCc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ---TIEEWRELQ  161 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~---~~~~W~~L~  161 (173)
                      +....|.|+|||++.++++++||++.|+|.++....   ....||+|.
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            888899999999999999999999999999997653   456899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.87  E-value=2.4e-22  Score=152.79  Aligned_cols=109  Identities=13%  Similarity=0.208  Sum_probs=94.0

Q ss_pred             cceecchheecccccceeeEEeeec---------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK---------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~---------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      |+|++++.|....++|.+.|..++.         ...|||||++      +..|+||+++++++||+|||+|.|. |+.+
T Consensus         2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~~~   80 (138)
T cd08407           2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LPSE   80 (138)
T ss_pred             CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CCHH
Confidence            8999999999999998877765532         2269999998      2247899999999999999999999 9999


Q ss_pred             cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      ++.+.+|.|+|||+|.++++++||++.+++..  .+.+.++|.++..
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~  125 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD  125 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence            99999999999999999999999999999975  3556789988744

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.86  E-value=2.4e-21  Score=144.93  Aligned_cols=113  Identities=23%  Similarity=0.345  Sum_probs=96.8

Q ss_pred             ccceecchheecccccceeeEEeeec--------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      .|+|++++.|......|.+.|+.++.        +..||||+++    .+++.||+++++++||.|||+|.|..++..++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~   81 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQL   81 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHh
Confidence            48999999999988888877776532        4469999997    35578999999999999999999943777777


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc--cccceeEeCcc
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS  162 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~--~~~~~W~~L~p  162 (173)
                      .+..|.|.|||+|+++++++||++.++|.++...  ++..+|.+|||
T Consensus        82 ~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          82 QDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            7778999999999999999999999999999766  56789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.86  E-value=2.5e-21  Score=142.89  Aligned_cols=112  Identities=37%  Similarity=0.593  Sum_probs=97.4

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      .|+|++++.|......|.+.|+..+.       +..||||+++    .+.++||++++++.||.|||+|.|. ++..++.
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~   80 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSELG   80 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHHhC
Confidence            47899999999888888877776542       3469999998    3457899999999999999999999 9877777


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      ...|.|.|||+|+++++++||++.++|+++..+...++|++|++
T Consensus        81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~~  124 (124)
T cd08385          81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES  124 (124)
T ss_pred             CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEccC
Confidence            77999999999999999999999999999987777899999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.86  E-value=2.6e-21  Score=142.93  Aligned_cols=112  Identities=23%  Similarity=0.444  Sum_probs=98.0

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      +|+|++++.|......|.+.|+..+.       +..||||+++    ...++||+++++++||.|||+|.|. ++..++.
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~   80 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQELP   80 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHhC
Confidence            48999999999988888877765532       3579999998    2457899999999999999999999 9887777


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      ...|.|.|||++.++++++||++.++|+++..++..+.||+|++
T Consensus        81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~  124 (124)
T cd08387          81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS  124 (124)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence            78999999999999999999999999999987888899999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.85  E-value=1.1e-21  Score=148.62  Aligned_cols=110  Identities=16%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|++++.|....++|.+.|..++.       +.+|||||++   .   ..++||+++++++||+|||+|.|. |+.+++
T Consensus         2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~l   80 (136)
T cd08406           2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIVL   80 (136)
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHHh
Confidence            7899999999988888877766542       3479999998   2   237799999999999999999999 999889


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      .+..|.|+|||+|.++++++||++.|+...  .+++..+|.++...
T Consensus        81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~  124 (136)
T cd08406          81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS  124 (136)
T ss_pred             CCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence            999999999999999999999999998764  35667899887554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>KOG1028|consensus

Probab=99.85  E-value=1.7e-21  Score=171.82  Aligned_cols=147  Identities=16%  Similarity=0.314  Sum_probs=117.4

Q ss_pred             CCChhhhheeeeeee-eeecCCCCchhhhhhhhccCCcccCCCCCCCcccceecchheecccccceeeEEeeec------
Q psy12096          3 PFDKREVVQEVLNVI-SFNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKK------   75 (173)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~------   75 (173)
                      ||||+++||||.+|| ++|...+..+-++....+...        .+..|+|.+++.|.....+|...|...+.      
T Consensus       244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~--------~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~  315 (421)
T KOG1028|consen  244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS--------EELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDV  315 (421)
T ss_pred             CcccccEEEEEEecCccccccccceeeeccccccCCc--------ccccceEEEEEEeecCCCeEEEEEEEecCCCcccC
Confidence            799999999999999 799988744555555544321        12227999999999999998866554432      


Q ss_pred             -cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 -EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 -~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                       ...|||||++      ...|+||.+.++++||+|||+|.|. |+.+.+.+..|.|+|||+|.++++++||.+.++... 
T Consensus       316 ~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~-  393 (421)
T KOG1028|consen  316 GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS-  393 (421)
T ss_pred             CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHhheeEEEEEEEEcccccccceeeEEEecCCC-
Confidence             3468999998      3458999999999999999999998 999999988999999999999999999999988765 


Q ss_pred             ccccccceeEeC
Q psy12096        149 DLAQTIEEWREL  160 (173)
Q Consensus       149 ~~~~~~~~W~~L  160 (173)
                       .+.+..+|.++
T Consensus       394 -~~~~~~hW~~m  404 (421)
T KOG1028|consen  394 -TGEEVRHWQEM  404 (421)
T ss_pred             -CchHHHHHHHH
Confidence             23335566664

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.84  E-value=1.6e-20  Score=138.61  Aligned_cols=113  Identities=24%  Similarity=0.433  Sum_probs=95.6

Q ss_pred             ccceecchheecccccceeeEEeee-------ccCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      .|+|++++.|......+.+.+....       .+..||||+++    ...+.+|+++++++||.|||+|.|..++.+.+.
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~   81 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQ   81 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhC
Confidence            4889999999988778877766543       23579999997    345789999999999999999999834445566


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      ...|.|.|||+|+++++++||++.++|.++...+..+.|++|+|
T Consensus        82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            67899999999999999999999999999988888899999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.84  E-value=2e-20  Score=138.24  Aligned_cols=111  Identities=18%  Similarity=0.327  Sum_probs=96.8

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      .|+|++++.|.....+|.+.++..+.       +..||||+++      ...++||++++++.||.|||+|.|. ++..+
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~   80 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEE   80 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHH
Confidence            38999999999998888887776542       4579999998      1457999999999999999999999 98877


Q ss_pred             CCCCEEEEEEEEcCCC--CCCceeEEEEEeCCccccccccceeEeCc
Q psy12096        117 AMNKTLVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ  161 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~--~~~d~IG~v~l~L~~l~~~~~~~~W~~L~  161 (173)
                      +....|.|.|||++.+  +++++||++.++|.++...+....||+|+
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            7778999999999986  78999999999999998777778999985

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=2.9e-20  Score=136.55  Aligned_cols=109  Identities=20%  Similarity=0.370  Sum_probs=94.0

Q ss_pred             cceecchheecccccceeeEEeee--------ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      |+|++++.|......|.+.|+..+        .+..||||+++      ...+.||++++++.||.|||+|.|. ++..+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~   79 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ   79 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence            678999999988888887776542        13569999997      1247899999999999999999999 98877


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      +....|.|.|||++.++++++||++.++|+++..+...+.||.|
T Consensus        80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            77779999999999999999999999999999877778899987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.83  E-value=3.3e-20  Score=137.95  Aligned_cols=87  Identities=14%  Similarity=0.042  Sum_probs=76.2

Q ss_pred             cCCCccEEEe-c-------CeEEeecccCCCCCCeeecEEEecccCcc-cCCCCEEEEEEEEcCCCCCCceeEEEEEeCC
Q psy12096         76 EIANESMKIA-D-------KVAEETGMPPWVVVSIFIERQILEGVPYA-DAMNKTLVFAIFDFDRFSKHDQIGEVKVALC  146 (173)
Q Consensus        76 ~~~dPyVkv~-~-------~~k~kTkv~kktlnP~wnEtf~F~gV~~~-~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~  146 (173)
                      +.+||||+++ .       +++++|+++++++||+|||+|.|. |+.+ .+....|.|.|||+|..+++++||++.++|+
T Consensus        18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~   96 (120)
T cd08395          18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLR   96 (120)
T ss_pred             CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHH
Confidence            4679999998 1       236799999999999999999999 8764 4556789999999998889999999999999


Q ss_pred             ccccccccceeEeCccC
Q psy12096        147 QIDLAQTIEEWRELQSV  163 (173)
Q Consensus       147 ~l~~~~~~~~W~~L~p~  163 (173)
                      ++..++....|++|++.
T Consensus        97 ~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          97 DIAQAGSCACWLPLGRR  113 (120)
T ss_pred             HCcCCCcEEEEEECcCc
Confidence            99988888899999775

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.83  E-value=4.5e-20  Score=135.92  Aligned_cols=109  Identities=20%  Similarity=0.297  Sum_probs=91.0

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEeccc-Cccc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGV-PYAD  116 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV-~~~~  116 (173)
                      |+|++++.|.....+|.+.++..+.       +..||||+++      ...++||+++++++||+|||+|.|. + +..+
T Consensus         3 G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~~   81 (125)
T cd04031           3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS-NVRRET   81 (125)
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEc-ccCHHH
Confidence            7899999999988888877776532       3579999998      1357899999999999999999998 5 3355


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  161 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~  161 (173)
                      +....|.|.|||++.++++++||++.++|.+. ......+||+|+
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~  125 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ  125 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence            66679999999999999999999999999984 344567999996

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.82  E-value=1.2e-20  Score=143.12  Aligned_cols=110  Identities=17%  Similarity=0.298  Sum_probs=93.1

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe----cC---eEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DK---VAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      ++|++++.|....++|.+.|..++.       +..|||||++    .+   .++||+++++++||+|||+|.|. |+.++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~   80 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQ   80 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHH
Confidence            5889999999999999877766532       3569999998    22   36799999999999999999999 99988


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      +...+|.|+|||+++++++++||++.+++.... ..+.++|+++..
T Consensus        81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~  125 (138)
T cd08408          81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKE  125 (138)
T ss_pred             hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHh
Confidence            988999999999999999999999999987554 234578988744

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.82  E-value=9.3e-20  Score=134.01  Aligned_cols=111  Identities=22%  Similarity=0.380  Sum_probs=95.3

Q ss_pred             cceecchheecccccceeeEEeee--------ccCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      |+|.+++.|.....+|.+.|+..+        .+..||||+++    .....+|+++++++||+|||+|.|. ++...+.
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~   79 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQ   79 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhc
Confidence            578899999988888887766542        13469999998    3346789999999999999999999 9887776


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      ...|.|.|||++..+++++||++.++|+++........|++|+|
T Consensus        80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            67999999999999999999999999999988777789999976

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.81  E-value=3.2e-20  Score=140.33  Aligned_cols=112  Identities=13%  Similarity=0.212  Sum_probs=95.6

Q ss_pred             cceecchheecccccceeeEEeeec------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      |+|++++.|....++|.+.|..++.      ...||||+++   .   ..++||+++++++||+|||+|.|. |+.+++.
T Consensus         2 G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~   80 (137)
T cd08409           2 GDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSRQLD   80 (137)
T ss_pred             cEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHHHhC
Confidence            7899999999988888877766532      3479999998   2   146799999999999999999999 9988898


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ...|.|.|||++.++++++||++.++......+.+.++|.+|...
T Consensus        81 ~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          81 TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence            889999999999999999999999997766666678899997543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.81  E-value=1.5e-19  Score=133.80  Aligned_cols=106  Identities=19%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             cceecchheecccccceeeEEeeec------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      |+|++++.|  ....|.+.|+.++.      +..||||+++      ...++||+++++++||.|||+|.|. ++.+++.
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~   77 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDYQ   77 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHhC
Confidence            567777777  34566666655432      3469999998      2347899999999999999999999 9877765


Q ss_pred             CCEEEEEEEEcCCCC-CCceeEEEEEeCCccccccccceeEeC
Q psy12096        119 NKTLVFAIFDFDRFS-KHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~-~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      . .|.|+|||++..+ ++++||++.|+|.++..++..+.||.|
T Consensus        78 ~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          78 K-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             C-EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            4 7899999999886 478999999999999867677899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.81  E-value=6.7e-20  Score=138.87  Aligned_cols=109  Identities=11%  Similarity=0.215  Sum_probs=88.6

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCC-CCeeecEEEecccCccc
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVV-VSIFIERQILEGVPYAD  116 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktl-nP~wnEtf~F~gV~~~~  116 (173)
                      .||.++|+|.+...+|.+.|...+.       ...|||||++      +..|+||+++++|+ ||.|||+|.|+ |+.+.
T Consensus         1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~   79 (135)
T cd08692           1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQE   79 (135)
T ss_pred             CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchh
Confidence            3788999999999998876655432       2347899998      33589999999995 69999999999 99865


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      . +..|.|.|||+++.+++++||++.++.++.. ..+.++|.++..
T Consensus        80 ~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~~  123 (135)
T cd08692          80 H-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTIA  123 (135)
T ss_pred             h-eeEEEEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHHh
Confidence            4 5799999999999999999999999997643 335689988743

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.80  E-value=2.6e-19  Score=139.25  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=89.6

Q ss_pred             ccceecchheeccc------------ccceeeEEeee-------ccCCCccEEEe------cCeEEeecccCCCCCCeee
Q psy12096         50 EEDLEMTEAFEDVS------------EELSSTVASIK-------KEIANESMKIA------DKVAEETGMPPWVVVSIFI  104 (173)
Q Consensus        50 ~~~l~~~~~~~~~~------------~~l~~lv~~ik-------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wn  104 (173)
                      +|+|.|++.|....            ..|.+.|+..+       .+..||||+++      ...++||+++++++||.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            37788888888744            34555555443       13579999987      2357899999999999999


Q ss_pred             cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        105 ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       105 Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      |+|.|..++..++.+..|.|.|||+|.++++++||++.+++..+......+.|++|..
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9999983345566667899999999999999999999999999877767788888754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.80  E-value=1.3e-19  Score=136.23  Aligned_cols=111  Identities=17%  Similarity=0.351  Sum_probs=93.0

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +|+|.+++.|......|.+.++..+.       +..||||+++   .+   .+.||+++++++||.|||+|.|. ++...
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~   79 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEE   79 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHH
Confidence            48899999999888888877766542       3469999997   22   36799999999999999999999 98877


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      +....|.|+|||+|.++++++||++.+++..  ...+..+|++|...
T Consensus        80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~  124 (136)
T cd08404          80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP  124 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence            7777899999999999999999999999987  35567899998543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>KOG1028|consensus

Probab=99.79  E-value=2.9e-19  Score=157.64  Aligned_cols=118  Identities=28%  Similarity=0.439  Sum_probs=102.3

Q ss_pred             cccceecchheecccccceeeEEeee-------ccCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      ..|.|++.+.|+...+.|.+.|....       .+..|||||++    ++.|++|+++++|+||+|||+|.|. |+..++
T Consensus       152 ~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l  230 (421)
T KOG1028|consen  152 AVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPYEEL  230 (421)
T ss_pred             eeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCHHHh
Confidence            34789999999988888877665442       23469999999    5579999999999999999999999 999999


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCccc
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  167 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~  167 (173)
                      ..++|.++|||+|+|++|++||++.++|..++.......|++|++....+
T Consensus       231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~  280 (421)
T KOG1028|consen  231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS  280 (421)
T ss_pred             ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc
Confidence            99999999999999999999999999999998776678899999874443

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.79  E-value=4.8e-19  Score=131.25  Aligned_cols=93  Identities=20%  Similarity=0.292  Sum_probs=81.0

Q ss_pred             cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||+++  .....||+++++|+||.|||+|.|. |+..   ...|.|.|||++.++++++||.+.++|+++..++.
T Consensus        20 g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~   95 (121)
T cd08401          20 KMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYG   95 (121)
T ss_pred             CCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCC
Confidence            3569999998  3346899999999999999999999 8742   35899999999999999999999999999977777


Q ss_pred             cceeEeCccCCccccccCC
Q psy12096        154 IEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       154 ~~~W~~L~p~~~~~~~~~~  172 (173)
                      .+.|++|++..+.++.+|+
T Consensus        96 ~~~w~~L~~~~~~~~~~G~  114 (121)
T cd08401          96 KDTWFPLQPVDADSEVQGK  114 (121)
T ss_pred             cEeeEEEEccCCCCcccEE
Confidence            7899999998877777775

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.78  E-value=9.4e-19  Score=129.83  Aligned_cols=95  Identities=17%  Similarity=0.264  Sum_probs=78.5

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc---ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc--
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY---ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID--  149 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~---~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~--  149 (173)
                      +..||||++. .+.++||+++++++||+|||+|.|. ++.   ++.....|.|.|||++.++++++||++.++|.++.  
T Consensus        18 g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (126)
T cd08682          18 GTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDED   96 (126)
T ss_pred             cCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhcc
Confidence            4579999998 6668899999999999999999999 875   23455689999999999999999999999999986  


Q ss_pred             cccccceeEeCccCC-ccccccC
Q psy12096        150 LAQTIEEWRELQSVE-GEGGQIG  171 (173)
Q Consensus       150 ~~~~~~~W~~L~p~~-~~~~~~~  171 (173)
                      .+.....||+|.+.. ++.+..|
T Consensus        97 ~~~~~~~W~~L~~~~~~~~~~~G  119 (126)
T cd08682          97 KGRRRTRWFKLESKPGKDDKERG  119 (126)
T ss_pred             CCCcccEEEECcCCCCCCccccc
Confidence            445567999998754 3344455

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.78  E-value=2.7e-19  Score=134.39  Aligned_cols=111  Identities=16%  Similarity=0.350  Sum_probs=92.4

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +|+|.+++.|......|.+.|+..+.       +..||||++.      ...+.||+++++++||.|||+|.|. ++.+.
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~   79 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLER   79 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHH
Confidence            38899999999988888887776542       3579999987      1236799999999999999999999 98777


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      +....|.|+|||++.++++++||++.+++...  +...++|++|...
T Consensus        80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~  124 (136)
T cd08405          80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK  124 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence            77778999999999999999999999999876  4456788887443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.78  E-value=3.7e-19  Score=134.03  Aligned_cols=111  Identities=17%  Similarity=0.283  Sum_probs=90.0

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe--c----CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA--D----KVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~--~----~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|.+++.|......|.+.|+..+.       +..||||+++  .    ..+++|+++++++||.|||+|.|. ++.+++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l   79 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEEL   79 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHh
Confidence            6789999998888788776665432       3479999988  1    236899999999999999999999 988888


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ....|.|+|||+|..+++++||++.|+..... ..+.++|+.|.+.
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~  124 (135)
T cd08410          80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS  124 (135)
T ss_pred             CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence            77789999999999999999999987764443 2246889998654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.78  E-value=4.3e-19  Score=132.52  Aligned_cols=109  Identities=15%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             ceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         52 DLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        52 ~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      .|++++.|......|.+.|+..+.       +..||||+++      ...+.||+++++++||.|||+|.|. ++..++.
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~   79 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLA   79 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhC
Confidence            378899999988888877776542       3469999998      1346899999999999999999999 9887777


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ...|.|.|||+|..+++++||++.+++...  +....+|+++...
T Consensus        80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~~  122 (133)
T cd08384          80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLKN  122 (133)
T ss_pred             CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHhC
Confidence            779999999999999999999999999853  4456899988654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.77  E-value=7.1e-19  Score=131.77  Aligned_cols=110  Identities=19%  Similarity=0.352  Sum_probs=91.7

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|.+++.|......|.+.|+..+.       +..||||+++   .   ..+++|+++++++||.|||+|.|. ++.+.+
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~   79 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENV   79 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHh
Confidence            6899999999988888888776542       3469999997   1   236899999999999999999999 987777


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ....|.|.|||++.++++++||++.+++..  .+++..+|++|...
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~  123 (134)
T cd08403          80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLAN  123 (134)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEECCCC--CCchHHHHHHHHHC
Confidence            767899999999999999999999999873  34566889887544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.77  E-value=7e-19  Score=132.12  Aligned_cols=110  Identities=18%  Similarity=0.363  Sum_probs=92.0

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEec------CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIAD------KVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~~------~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|.+++.|......+.+.|+..+.       +..||||+++.      ..+++|+++++++||.|||+|.|. ++..++
T Consensus         2 G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l   80 (136)
T cd08402           2 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQI   80 (136)
T ss_pred             cEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHHh
Confidence            7899999999988888877765542       34799999981      136789999999999999999999 988777


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ....|.|.|||++.++++++||++.+++...  +.+..+|++|...
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            7778999999999999999999999999764  4566888887544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.76  E-value=9.6e-18  Score=123.67  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=78.7

Q ss_pred             CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096         77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE  155 (173)
Q Consensus        77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~  155 (173)
                      ..||||+++ ...+.+|+++++++||.|||+|.|. +....  ...|.|.|||++.++++++||++.++|.++......+
T Consensus        20 ~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~   96 (123)
T cd04025          20 TSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEE   96 (123)
T ss_pred             CcCceEEEEECCEEEeceeecCCCCCccCcEEEEE-cCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCC
Confidence            569999999 5667899999999999999999999 76533  4589999999999999999999999999987666678


Q ss_pred             eeEeCccCCccccccCC
Q psy12096        156 EWRELQSVEGEGGQIGK  172 (173)
Q Consensus       156 ~W~~L~p~~~~~~~~~~  172 (173)
                      .|++|.+....+++-||
T Consensus        97 ~w~~L~~~~~~~~~~~~  113 (123)
T cd04025          97 GWFRLLPDPRAEEESGG  113 (123)
T ss_pred             CEEECCCCCCCCccccC
Confidence            99999987655555544

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=2.5e-18  Score=132.14  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=76.9

Q ss_pred             cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccC-------------cccCCCCEEEEEEEEcCCCCCCc
Q psy12096         76 EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVP-------------YADAMNKTLVFAIFDFDRFSKHD  136 (173)
Q Consensus        76 ~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~-------------~~~l~~~~L~~~V~D~d~~~~~d  136 (173)
                      +..||||+++      +..++||+++++|+||+|||+|.|. +.             .+++....|.|.|||++.+++++
T Consensus        17 g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~dd   95 (148)
T cd04010          17 GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDV   95 (148)
T ss_pred             CCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCc
Confidence            4679999998      1257899999999999999999999 74             34555568999999999999999


Q ss_pred             eeEEEEEeCCccccc-cccceeEeCccCCccc
Q psy12096        137 QIGEVKVALCQIDLA-QTIEEWRELQSVEGEG  167 (173)
Q Consensus       137 ~IG~v~l~L~~l~~~-~~~~~W~~L~p~~~~~  167 (173)
                      |||++.|+|..+... .....||+|+++..-+
T Consensus        96 fLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~  127 (148)
T cd04010          96 FLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS  127 (148)
T ss_pred             eeEEEEEecccccccCCcCcceeecCCccccc
Confidence            999999999999866 5678999999875444

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=6.5e-18  Score=125.46  Aligned_cols=95  Identities=13%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc-ccCCCCEEEEEEEEcCCCC-CCceeEEEEEeCCccc-cc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY-ADAMNKTLVFAIFDFDRFS-KHDQIGEVKVALCQID-LA  151 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~-~~l~~~~L~~~V~D~d~~~-~~d~IG~v~l~L~~l~-~~  151 (173)
                      +..||||+++ ...++||+++++++||.|||+|.|. +.. ..+....|.|.|||+++++ ++++||++.++|..+. .+
T Consensus        19 g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~   97 (127)
T cd04022          19 GSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPS   97 (127)
T ss_pred             CCcCcEEEEEECCEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCC
Confidence            4569999998 5668899999999999999999999 764 3344568999999999987 8999999999999886 34


Q ss_pred             cccceeEeCccCCccccccC
Q psy12096        152 QTIEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       152 ~~~~~W~~L~p~~~~~~~~~  171 (173)
                      .....||+|+.+...++++|
T Consensus        98 ~~~~~w~~L~~~~~~~~~~G  117 (127)
T cd04022          98 EAVVQRYPLEKRGLFSRVRG  117 (127)
T ss_pred             CccceEeEeeeCCCCCCccE
Confidence            55679999987655555666

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.73  E-value=7.3e-18  Score=125.15  Aligned_cols=111  Identities=18%  Similarity=0.324  Sum_probs=93.5

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|++++.|.....+|.+.|+..+.       +..||||+++   .   ..+++|++++++.||.|||+|.|. ++...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l   79 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQL   79 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHh
Confidence            6789999999888888877766532       3569999988   1   236799999999999999999999 988776


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  164 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~  164 (173)
                      ....|.|.|||++.++++++||++.+++++  .+...++|++|....
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            667999999999999999999999999998  466778999997664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=3.7e-17  Score=122.54  Aligned_cols=85  Identities=14%  Similarity=0.050  Sum_probs=73.6

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCC------CCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS------KHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~------~~d~IG~v~l~L~~l  148 (173)
                      +..||||.+. ...+.||+++++++||+|||+|.|. +...   ...|.|.|||++.++      .+++||++.++|..+
T Consensus        22 g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l   97 (126)
T cd08379          22 GSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTL   97 (126)
T ss_pred             CCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHc
Confidence            4579999998 6668899999999999999999999 7532   238999999999874      899999999999999


Q ss_pred             ccccccceeEeCccCC
Q psy12096        149 DLAQTIEEWRELQSVE  164 (173)
Q Consensus       149 ~~~~~~~~W~~L~p~~  164 (173)
                      ..+...+.||+|.+..
T Consensus        98 ~~~~~~~~~~~L~~~~  113 (126)
T cd08379          98 EDDRVYAHSYPLLSLN  113 (126)
T ss_pred             cCCCEEeeEEEeEeCC
Confidence            8777778999998654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.72  E-value=4.6e-17  Score=121.20  Aligned_cols=85  Identities=14%  Similarity=0.200  Sum_probs=72.6

Q ss_pred             cCCCccEEEe-cCeEEeecccCC-CCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCC-cccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPW-VVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC-QIDLAQ  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~-~l~~~~  152 (173)
                      +..||||++. .+.+.||+++.+ ++||.|||+|.|. ++..   ...|.|.|||+|.+++|++||.+.++|. .+..++
T Consensus        20 g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~   95 (121)
T cd04016          20 TRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGE   95 (121)
T ss_pred             CCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCC
Confidence            4579999999 666789999876 7999999999999 8642   2479999999999999999999999996 566666


Q ss_pred             ccceeEeCccCC
Q psy12096        153 TIEEWRELQSVE  164 (173)
Q Consensus       153 ~~~~W~~L~p~~  164 (173)
                      ..+.|++|++..
T Consensus        96 ~~~~W~~L~~~~  107 (121)
T cd04016          96 TLDDWYSLSGKQ  107 (121)
T ss_pred             CccccEeCcCcc
Confidence            679999998754

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.72  E-value=9e-17  Score=119.67  Aligned_cols=92  Identities=21%  Similarity=0.325  Sum_probs=74.5

Q ss_pred             cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ...||||+++ .. .+.||++. +++||.|||+|.|. +...++  ..+.|.|||++.++++++||++.++|..+..+..
T Consensus        20 ~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~   95 (126)
T cd08400          20 HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQE   95 (126)
T ss_pred             CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCc
Confidence            3579999998 33 45789874 68999999999998 655443  3688999999999999999999999999987777


Q ss_pred             cceeEeCccCCc-cccccC
Q psy12096        154 IEEWRELQSVEG-EGGQIG  171 (173)
Q Consensus       154 ~~~W~~L~p~~~-~~~~~~  171 (173)
                      .+.|+.|.+... ..+..|
T Consensus        96 ~~~W~~L~~~~~~~~~~~G  114 (126)
T cd08400          96 TDEWYPLSSASPLKGGEWG  114 (126)
T ss_pred             ccEeEEcccCCCCCCCcCc
Confidence            789999998754 334444

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.72  E-value=8.6e-17  Score=118.37  Aligned_cols=91  Identities=19%  Similarity=0.261  Sum_probs=76.6

Q ss_pred             cCCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||++. . +...+|+++++++||.|||+|.|. +..  . ...|.|.|||+|.++++++||++.++|.++..+..
T Consensus        19 g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~-v~~--~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~   94 (121)
T cd04042          19 GTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLP-IED--V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKP   94 (121)
T ss_pred             CCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEE-ecC--C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCC
Confidence            4579999998 3 357899999999999999999999 753  2 35899999999999999999999999999987777


Q ss_pred             cceeEeCccCCccccccC
Q psy12096        154 IEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       154 ~~~W~~L~p~~~~~~~~~  171 (173)
                      .+.|++|.+... .+..|
T Consensus        95 ~~~~~~L~~~~~-~~~~G  111 (121)
T cd04042          95 TEVKLKLEDPNS-DEDLG  111 (121)
T ss_pred             eEEEEECCCCCC-ccCce
Confidence            889999976554 34444

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.71  E-value=8.8e-17  Score=118.51  Aligned_cols=109  Identities=24%  Similarity=0.261  Sum_probs=88.4

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|++++.|......|.+.|+..+.       +..||||+++      ...+.+|++++++.||.|||+|.|..+...++
T Consensus         2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~   81 (123)
T cd04035           2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI   81 (123)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence            7899999999988888777665532       3569999987      23478999999999999999999962554556


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      ....|.|.|||++.+ .+++||++.++|+++......+.|++|
T Consensus        82 ~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          82 QRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             CCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence            567899999999998 889999999999999766555666654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.71  E-value=4.6e-17  Score=118.30  Aligned_cols=86  Identities=19%  Similarity=0.330  Sum_probs=75.2

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCee-ecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc---
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIF-IERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL---  150 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~w-nEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~---  150 (173)
                      +..||||+++ ...+.||+++++++||.| ||+|.|. ++...+....|.|.|||++.++++++||++.++|.++..   
T Consensus        19 ~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~   97 (110)
T cd08688          19 DLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDS   97 (110)
T ss_pred             CCCCceEEEEECCeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCC
Confidence            4569999999 557899999999999999 9999999 987766667999999999999999999999999999865   


Q ss_pred             ccccceeEeCcc
Q psy12096        151 AQTIEEWRELQS  162 (173)
Q Consensus       151 ~~~~~~W~~L~p  162 (173)
                      ....+.||+|..
T Consensus        98 ~~~~~~w~~l~~  109 (110)
T cd08688          98 VSQISGWFPIYD  109 (110)
T ss_pred             ccccCCeEEccc
Confidence            234678999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.70  E-value=1e-16  Score=116.78  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=75.2

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      +..||||+++ .+.+.||+++++|+||.|||+|.|. +...  ....|.|.|||++.++++++||++.++|+++..+...
T Consensus        19 ~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~   95 (116)
T cd08376          19 GLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTH   95 (116)
T ss_pred             CCCCcEEEEEECCEeEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCce
Confidence            3569999999 5668999999999999999999999 7643  2468999999999999999999999999998877777


Q ss_pred             ceeEeCccC
Q psy12096        155 EEWRELQSV  163 (173)
Q Consensus       155 ~~W~~L~p~  163 (173)
                      +.|++|++.
T Consensus        96 ~~w~~L~~~  104 (116)
T cd08376          96 SLELELEDG  104 (116)
T ss_pred             EEEEEccCC
Confidence            899999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.70  E-value=1.5e-16  Score=117.81  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=74.4

Q ss_pred             CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc---
Q psy12096         77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ---  152 (173)
Q Consensus        77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~---  152 (173)
                      ..||||+++ ...+.||+++++++||.|||+|.|. +..  +....|.|+|||+|.+ ++++||++.++|+.+....   
T Consensus        16 ~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~-~~~--~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~   91 (121)
T cd08378          16 SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFS-KDR--LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPD   91 (121)
T ss_pred             cCCCEEEEEECCccccccccCCCCCCccceEEEEE-cCC--CcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCC
Confidence            679999999 5568899999999999999999999 653  3456899999999987 7899999999999986532   


Q ss_pred             --ccceeEeCccCCccccccC
Q psy12096        153 --TIEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       153 --~~~~W~~L~p~~~~~~~~~  171 (173)
                        ..+.||+|++... ++..|
T Consensus        92 ~~~~~~W~~L~~~~~-~~~~G  111 (121)
T cd08378          92 SPLAPQWYRLEDKKG-GRVGG  111 (121)
T ss_pred             CCCCcceEEccCCCC-Cccce
Confidence              2468999998765 44444

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.69  E-value=1.9e-16  Score=117.57  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=77.1

Q ss_pred             cCCCccEEEe-c--CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096         76 EIANESMKIA-D--KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  152 (173)
Q Consensus        76 ~~~dPyVkv~-~--~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~  152 (173)
                      +..|||++++ .  ..+.||+++++++||.|||+|.|. +...   ...|.|.|||++..+++++||++.++++.+....
T Consensus        16 g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~   91 (126)
T cd08678          16 GSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNP   91 (126)
T ss_pred             CCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCC
Confidence            4789999998 2  457899999999999999999999 8532   4589999999999999999999999999987666


Q ss_pred             ccceeEeCccCCc-cccccC
Q psy12096        153 TIEEWRELQSVEG-EGGQIG  171 (173)
Q Consensus       153 ~~~~W~~L~p~~~-~~~~~~  171 (173)
                      ....|++|++... ..++.|
T Consensus        92 ~~~~~~~L~~~~~~~~~~~G  111 (126)
T cd08678          92 SGRQIFPLQGRPYEGDSVSG  111 (126)
T ss_pred             ceeEEEEecCCCCCCCCcce
Confidence            6789999998743 234454

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.69  E-value=1.3e-16  Score=123.57  Aligned_cols=87  Identities=15%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcc------cCCCCEEEEEEEEcCCC-CCCceeEEE
Q psy12096         75 KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYA------DAMNKTLVFAIFDFDRF-SKHDQIGEV  141 (173)
Q Consensus        75 ~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~------~l~~~~L~~~V~D~d~~-~~~d~IG~v  141 (173)
                      .+..||||+++      ...+.||+++++|+||+|||+|.|. |+..      .+....|.|.|||++.+ ++|++||++
T Consensus        22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~  100 (155)
T cd08690          22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTA  100 (155)
T ss_pred             CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEE
Confidence            34679999997      3458999999999999999999999 8765      35567899999999987 579999999


Q ss_pred             EEeCCccccccccceeEeCcc
Q psy12096        142 KVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       142 ~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      .++|..+........|++|..
T Consensus       101 ~i~L~~l~~~~~~~~~~~L~~  121 (155)
T cd08690         101 QVKLEPLETKCEIHESVDLMD  121 (155)
T ss_pred             EEEcccccccCcceEEEEhhh
Confidence            999999976667778999863

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>KOG0905|consensus

Probab=99.68  E-value=1.3e-17  Score=157.49  Aligned_cols=133  Identities=17%  Similarity=0.255  Sum_probs=112.1

Q ss_pred             hhhhhhccCCcccCCCCCCCccc----------------------ceecchheecccccceeeEEeee-------ccCCC
Q psy12096         29 ADSIKRKTQATTTTTPLPEDEEE----------------------DLEMTEAFEDVSEELSSTVASIK-------KEIAN   79 (173)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~~~~~~l~~lv~~ik-------~~~~d   79 (173)
                      -++|++.+.+||||||+++||..                      ++.+++.|.  ...|..+|..+|       .+..|
T Consensus      1469 s~EVa~cDlVyTFFhpllrDe~~~gsp~~~~~~~~ps~~p~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~ 1546 (1639)
T KOG0905|consen 1469 SDEVAHCDLVYTFFHPLLRDEKKEGSPAIKESKGMPSRNPGEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPD 1546 (1639)
T ss_pred             CchhhccceeeeeechhhhhhhhcCCccccccccCCCCCccccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCC
Confidence            36899999999999999999542                      344555555  344555554444       24579


Q ss_pred             ccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         80 ESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        80 PyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ||||.+      +..|+||+++++|+||.|||++.|+|++.+.+.++.|+++||..+.+..+.++|.+.++|.++++.++
T Consensus      1547 pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE 1626 (1639)
T KOG0905|consen 1547 PYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE 1626 (1639)
T ss_pred             cceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh
Confidence            999999      44589999999999999999999999999999989999999999999999999999999999999988


Q ss_pred             cceeEeCccC
Q psy12096        154 IEEWRELQSV  163 (173)
Q Consensus       154 ~~~W~~L~p~  163 (173)
                      ...||.|...
T Consensus      1627 ~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1627 SVGWYNLGAC 1636 (1639)
T ss_pred             hcceeecccc
Confidence            8899999754

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.68  E-value=2.6e-16  Score=115.47  Aligned_cols=84  Identities=12%  Similarity=0.170  Sum_probs=72.9

Q ss_pred             cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      +..||||++.    ...++||++++++.||.|||+|.|. +...  ....|.|.|||+|.+ ++++||++.+++..+..+
T Consensus        19 ~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g   94 (119)
T cd04036          19 STPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLG   94 (119)
T ss_pred             CCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCC
Confidence            3579999998    2457899999999999999999999 8654  234799999999998 899999999999999877


Q ss_pred             cccceeEeCccC
Q psy12096        152 QTIEEWRELQSV  163 (173)
Q Consensus       152 ~~~~~W~~L~p~  163 (173)
                      .....|++|.+.
T Consensus        95 ~~~~~~~~L~~~  106 (119)
T cd04036          95 EKVRVTFSLNPQ  106 (119)
T ss_pred             CcEEEEEECCCC
Confidence            778899999875

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.68  E-value=3.1e-16  Score=117.63  Aligned_cols=100  Identities=17%  Similarity=0.228  Sum_probs=83.0

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe----c----CeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----D----KVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~----~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      .|+|.+++.|....+.+.+.|+..+.       +..||||+++    .    ..++||+++++|+||+|||+|.|. +..
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~   80 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VPP   80 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-ech
Confidence            47899999999887788777765532       3579999998    1    347999999999999999999999 865


Q ss_pred             cc--CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096        115 AD--AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus       115 ~~--l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      .+  .....|.|.|||+++++++++||++.++|+++..
T Consensus        81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            32  3456899999999999999999999999998863

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.67  E-value=5.1e-16  Score=114.64  Aligned_cols=93  Identities=22%  Similarity=0.290  Sum_probs=76.4

Q ss_pred             cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc-c
Q psy12096         76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-Q  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~-~  152 (173)
                      +..||||++. .. ...||+++++++||.|||.|.|. ++..   ...|.|.|||++.++++++||++.++++.+... .
T Consensus        19 g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~   94 (121)
T cd04054          19 GSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPR   94 (121)
T ss_pred             CCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCC
Confidence            4569999998 33 34799999999999999999999 7642   358999999999999999999999998877533 2


Q ss_pred             ccceeEeCccCCccccccCC
Q psy12096        153 TIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       153 ~~~~W~~L~p~~~~~~~~~~  172 (173)
                      ..+.|++|++..+.+++.|+
T Consensus        95 ~~~~W~~L~~~~~~~~~~G~  114 (121)
T cd04054          95 GIDGWMNLTEVDPDEEVQGE  114 (121)
T ss_pred             CCCcEEECeeeCCCCccccE
Confidence            36799999987776666664

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.67  E-value=4.9e-16  Score=115.73  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=75.2

Q ss_pred             cCCCccEEEe--cC------eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096         76 EIANESMKIA--DK------VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ  147 (173)
Q Consensus        76 ~~~dPyVkv~--~~------~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~  147 (173)
                      +..||||+++  ..      .+.+|+++++++||.|||+|.|. +...   ...|.|.|||++.++++++||++.+++.+
T Consensus        19 ~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~   94 (133)
T cd04033          19 GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNN   94 (133)
T ss_pred             CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence            3579999998  21      25799999999999999999999 8642   35799999999999999999999999998


Q ss_pred             cccccc------cceeEeCccCCccccccC
Q psy12096        148 IDLAQT------IEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       148 l~~~~~------~~~W~~L~p~~~~~~~~~  171 (173)
                      +.....      ...||.|++....++..|
T Consensus        95 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G  124 (133)
T cd04033          95 LPTETPGNERRYTFKDYLLRPRSSKSRVKG  124 (133)
T ss_pred             CCCcCccccccccchheeeeecCCCCccee
Confidence            865432      248999998766666666

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.66  E-value=6e-16  Score=114.77  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=77.2

Q ss_pred             ccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         75 KEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        75 ~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      .+..||||+++ ...+++|++++++.||.|||+|.|. +.........|.|.|||++.++++++||++.++|+++..++.
T Consensus        12 ~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~   90 (127)
T cd08373          12 KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL   90 (127)
T ss_pred             CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCc
Confidence            35679999999 5567899999999999999999999 865434457899999999999999999999999999987777


Q ss_pred             cceeEeCccCCc
Q psy12096        154 IEEWRELQSVEG  165 (173)
Q Consensus       154 ~~~W~~L~p~~~  165 (173)
                      ...|++|.+...
T Consensus        91 ~~~~~~L~~~~~  102 (127)
T cd08373          91 LEVTEPLLDSNG  102 (127)
T ss_pred             eEEEEeCcCCCC
Confidence            788999976543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=6e-16  Score=117.09  Aligned_cols=91  Identities=20%  Similarity=0.259  Sum_probs=77.9

Q ss_pred             cCCCccEEEe-c----CeEEeecccCCCCCCeeecEEEecccCcc-------------cCCCCEEEEEEEEcCCCCCCce
Q psy12096         76 EIANESMKIA-D----KVAEETGMPPWVVVSIFIERQILEGVPYA-------------DAMNKTLVFAIFDFDRFSKHDQ  137 (173)
Q Consensus        76 ~~~dPyVkv~-~----~~k~kTkv~kktlnP~wnEtf~F~gV~~~-------------~l~~~~L~~~V~D~d~~~~~d~  137 (173)
                      +..||||+++ .    ..+.+|++++++.||.|||+|.|. +...             ++....|.|.|||++.++++++
T Consensus        17 g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~   95 (137)
T cd08675          17 GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF   95 (137)
T ss_pred             CCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence            4679999998 3    668999999999999999999999 7653             3456789999999999999999


Q ss_pred             eEEEEEeCCccccccccceeEeCccCCccc
Q psy12096        138 IGEVKVALCQIDLAQTIEEWRELQSVEGEG  167 (173)
Q Consensus       138 IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~  167 (173)
                      ||++.++|..+........||.|++....+
T Consensus        96 IG~~~i~l~~l~~~~~~~~W~~L~~~~~~~  125 (137)
T cd08675          96 LGEVRIPLQGLQQAGSHQAWYFLQPREAPG  125 (137)
T ss_pred             EEEEEEehhhccCCCcccceEecCCcCCCC
Confidence            999999999987666678999999986443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.65  E-value=6.3e-16  Score=114.00  Aligned_cols=94  Identities=19%  Similarity=0.218  Sum_probs=76.7

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc---c
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL---A  151 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~---~  151 (173)
                      +..||||++. ...+.+|+++++++||.|||+|.|. +..  .....|.|.|||++.++.+++||++.++|.++..   .
T Consensus        22 ~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~   98 (128)
T cd04024          22 GKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKT   98 (128)
T ss_pred             CCcCCeEEEEECCEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhccccc
Confidence            4569999998 5678999999999999999999999 764  3356899999999999999999999999998852   2


Q ss_pred             cccceeEeCccCCcc--ccccCC
Q psy12096        152 QTIEEWRELQSVEGE--GGQIGK  172 (173)
Q Consensus       152 ~~~~~W~~L~p~~~~--~~~~~~  172 (173)
                      .....||.|.+....  +.++|.
T Consensus        99 ~~~~~w~~L~~~~~~~~~~~~G~  121 (128)
T cd04024          99 GQSDKWITLKSTRPGKTSVVSGE  121 (128)
T ss_pred             CccceeEEccCcccCccccccce
Confidence            335789999887433  345653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.65  E-value=1.2e-15  Score=113.49  Aligned_cols=109  Identities=16%  Similarity=0.330  Sum_probs=85.4

Q ss_pred             ccceecchheecccccceeeEEeee-------ccCCCccEEEe-c-----CeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA-D-----KVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~-~-----~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +|+|.+++.|..  ..+...++..+       ....||||++. .     ..+.+|++++++.||.|||+|.|. +...+
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~   77 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD   77 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence            377888888877  33444444432       13479999988 1     357999999999999999999999 87644


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      . ...|.|.|||++.++.+++||++.++|.++.. ...+.||+|...
T Consensus        78 ~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~w~~L~~~  122 (131)
T cd04026          78 K-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQ  122 (131)
T ss_pred             c-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCc-CccCceEECcCc
Confidence            3 35899999999999999999999999998863 367899999553

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.64  E-value=1e-15  Score=111.85  Aligned_cols=85  Identities=20%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             cCCCccEEEe-cCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||+++ ...+.+|+++. +++||.|||+|.|. ++..  ....|.|.|||++..+ +++||++.+++.++.....
T Consensus        20 ~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~   95 (118)
T cd08681          20 DKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGE   95 (118)
T ss_pred             CCCCceEEEEECCCccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCC
Confidence            3569999998 55678888875 47999999999999 8764  2458999999999877 8999999999998865666


Q ss_pred             cceeEeCccCC
Q psy12096        154 IEEWRELQSVE  164 (173)
Q Consensus       154 ~~~W~~L~p~~  164 (173)
                      ...|++|....
T Consensus        96 ~~~w~~L~~~~  106 (118)
T cd08681          96 FDDWYELTLKG  106 (118)
T ss_pred             CCCcEEeccCC
Confidence            78999997643

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.64  E-value=2e-15  Score=113.25  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc-
Q psy12096         77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-  154 (173)
Q Consensus        77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~-  154 (173)
                      ..||||++. .+.|.+|++.+++ ||.|||+|.|. +..  .. ..|.|.|||.|.+ .||+||++.++|+++..++.. 
T Consensus        19 ~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~-~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~   92 (127)
T cd08394          19 KFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFE-INR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEG   92 (127)
T ss_pred             CCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEE-EcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCC
Confidence            458999998 6678899999884 99999999999 743  33 3599999999865 899999999999998655544 


Q ss_pred             -ceeEeCccC--CccccccCC
Q psy12096        155 -EEWRELQSV--EGEGGQIGK  172 (173)
Q Consensus       155 -~~W~~L~p~--~~~~~~~~~  172 (173)
                       ..||.|+|.  .+.+.+.|+
T Consensus        93 ~~~Wy~L~~~~~~~~~~~~~~  113 (127)
T cd08394          93 PGEWLTLDSEVNMKNGQIVGT  113 (127)
T ss_pred             CCccEecChHHhccCCeEecc
Confidence             689999875  455555554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.64  E-value=2.3e-15  Score=115.79  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=71.6

Q ss_pred             cCCCccEEEe-cCeEEeecccCC-CCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc--
Q psy12096         76 EIANESMKIA-DKVAEETGMPPW-VVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--  151 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~--  151 (173)
                      +..||||++. ...+.||++..+ ++||+|||+|.|. ++..  ....|.|.|||++..+++++||++.++|+++...  
T Consensus        19 g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~-v~~~--~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~   95 (150)
T cd04019          19 RVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFV-AAEP--FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVD   95 (150)
T ss_pred             CCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEE-ecCc--cCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCC
Confidence            4579999999 567889998876 6999999999999 8642  2358999999999999999999999999998532  


Q ss_pred             --cccceeEeCccCC
Q psy12096        152 --QTIEEWRELQSVE  164 (173)
Q Consensus       152 --~~~~~W~~L~p~~  164 (173)
                        ...+.||+|+...
T Consensus        96 ~~~~~~~W~~L~~~~  110 (150)
T cd04019          96 DRPVPSRWFSLERPG  110 (150)
T ss_pred             CCccCCceEECcCCC
Confidence              3357999998765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1030|consensus

Probab=99.64  E-value=3.5e-16  Score=121.50  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=64.7

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      +..||||.+. .+++.||+++.+++||.|||.|.|. |+..   ...|.++|||+|.++++|+||.+.|+|..+...
T Consensus        25 ~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~-v~d~---~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   25 GSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFT-VKDP---NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA   97 (168)
T ss_pred             cCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEE-ecCC---CceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence            5679999998 7889999999999999999999999 8753   358999999999999999999999999988543

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.63  E-value=2.1e-15  Score=108.57  Aligned_cols=83  Identities=12%  Similarity=0.167  Sum_probs=69.7

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc--
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~--  152 (173)
                      +..||||++. .+.++||++++++.||.|||+|.|. +....  ...|.|.|||++.   +++||++.++|.++...+  
T Consensus        19 ~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~   92 (105)
T cd04050          19 KEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFL-VRNPE--NQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDL   92 (105)
T ss_pred             CCCCcEEEEEECCEEEeCccccCCCCCcccceEEEE-eCCCC--CCEEEEEEEECCC---CCccEEEEEEHHHhhccccc
Confidence            4679999998 5678999999999999999999999 87533  3479999999886   789999999999886443  


Q ss_pred             ccceeEeCccCC
Q psy12096        153 TIEEWRELQSVE  164 (173)
Q Consensus       153 ~~~~W~~L~p~~  164 (173)
                      ..+.||+|+...
T Consensus        93 ~~~~w~~L~~~g  104 (105)
T cd04050          93 TLDQPFPLDNSG  104 (105)
T ss_pred             eeeeeEecCCCC
Confidence            457999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.63  E-value=1.4e-15  Score=113.13  Aligned_cols=91  Identities=13%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----------CCCceeEEEEE
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----------SKHDQIGEVKV  143 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----------~~~d~IG~v~l  143 (173)
                      +..||||+++ ...+.+|+++++++||.|||+|.|. +...   ...|.|.|||+|..           +.+++||++.+
T Consensus        20 g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i   95 (127)
T cd04027          20 GTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTII   95 (127)
T ss_pred             CCcCcEEEEEECCEeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEE
Confidence            3469999998 5567899999999999999999998 6432   34799999999853           46899999999


Q ss_pred             eCCccccccccceeEeCccCCccccccCC
Q psy12096        144 ALCQIDLAQTIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       144 ~L~~l~~~~~~~~W~~L~p~~~~~~~~~~  172 (173)
                      ++..+.  .....||.|++....++++|+
T Consensus        96 ~l~~~~--~~~~~w~~L~~~~~~~~~~G~  122 (127)
T cd04027          96 EVRTLS--GEMDVWYNLEKRTDKSAVSGA  122 (127)
T ss_pred             EhHHcc--CCCCeEEECccCCCCCcEeEE
Confidence            998774  346799999999888889885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.63  E-value=1.8e-15  Score=116.69  Aligned_cols=93  Identities=16%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             ccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         75 KEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        75 ~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ....||||++. ...+.||+++++++||+|||+|.|. +..+... ..|.|+|||+|..+++++||++.++|.++...+.
T Consensus        32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~  109 (151)
T cd04018          32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFP-EMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD  109 (151)
T ss_pred             CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEE-eeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence            45679999999 5667899999999999999999999 7654443 4899999999999999999999999998864432


Q ss_pred             -------cceeEeCccCCccccc
Q psy12096        154 -------IEEWRELQSVEGEGGQ  169 (173)
Q Consensus       154 -------~~~W~~L~p~~~~~~~  169 (173)
                             ...|+.|....+...-
T Consensus       110 ~~~lp~~~p~W~~lyg~~~~~~~  132 (151)
T cd04018         110 EGFLPTFGPSFVNLYGSPREYSL  132 (151)
T ss_pred             cccCCccCceEEEeecCcccccc
Confidence                   1479998665554443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.63  E-value=1e-15  Score=111.51  Aligned_cols=72  Identities=21%  Similarity=0.242  Sum_probs=63.4

Q ss_pred             CCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         78 ANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        78 ~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      .||||+++ .++++||+++++++||+|||+|.|. +...+. ...|.|.|||+|.++++++||++.++|+.+..+
T Consensus        26 ~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          26 MDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             cCceEEEEECCEeEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence            69999999 5667899999999999999999999 865443 358999999999999999999999999988533

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.63  E-value=9.8e-16  Score=111.22  Aligned_cols=87  Identities=11%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             ccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc--ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         75 KEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY--ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        75 ~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~--~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      .+..||||++. ...+++|+++++++||.|||+|.|. +..  .++....|.|+|||++.++++++||++.++|+.+...
T Consensus        18 ~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~   96 (111)
T cd04011          18 GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQ   96 (111)
T ss_pred             CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCC
Confidence            45679999998 5667899999999999999999998 643  3344568999999999999999999999999988544


Q ss_pred             c---ccceeEeCcc
Q psy12096        152 Q---TIEEWRELQS  162 (173)
Q Consensus       152 ~---~~~~W~~L~p  162 (173)
                      .   -...|+.|..
T Consensus        97 ~~~~~~~~w~~L~~  110 (111)
T cd04011          97 PDHAFLRKWLLLTD  110 (111)
T ss_pred             CCCcceEEEEEeeC
Confidence            2   2367999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>KOG0696|consensus

Probab=99.62  E-value=1.7e-16  Score=138.80  Aligned_cols=86  Identities=16%  Similarity=0.373  Sum_probs=75.0

Q ss_pred             ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         75 KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        75 ~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      ++.+||||++.      ...|+||++++.++||+|||+|.|. +...+.. +.|.|.|||||+.++|||+|...+.++.+
T Consensus       198 NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl  275 (683)
T KOG0696|consen  198 NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISEL  275 (683)
T ss_pred             CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHH
Confidence            35679999987      4468999999999999999999999 8776654 68999999999999999999999999988


Q ss_pred             ccccccceeEeCccC
Q psy12096        149 DLAQTIEEWRELQSV  163 (173)
Q Consensus       149 ~~~~~~~~W~~L~p~  163 (173)
                      . ....+.||.|...
T Consensus       276 ~-K~p~~GWyKlLsq  289 (683)
T KOG0696|consen  276 Q-KAPVDGWYKLLSQ  289 (683)
T ss_pred             h-hcchhhHHHHhhh
Confidence            6 4467899998654

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.62  E-value=2.9e-15  Score=109.31  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      +..||||+++ .+...+|++++++.||.|||+|.|. +...  ....|.|.|||++.. ++++||++.++|.++......
T Consensus        26 g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~  101 (121)
T cd08391          26 GKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFI  101 (121)
T ss_pred             CCcCCEEEEEECCEeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCcc
Confidence            4579999999 5578999999999999999999998 7542  346899999999988 889999999999998766566


Q ss_pred             ceeEeCccC
Q psy12096        155 EEWRELQSV  163 (173)
Q Consensus       155 ~~W~~L~p~  163 (173)
                      +.|++|.+.
T Consensus       102 ~~w~~L~~~  110 (121)
T cd08391         102 DEWLPLEDV  110 (121)
T ss_pred             ceEEECcCC
Confidence            899999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.62  E-value=3.3e-15  Score=110.60  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             cCCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCC--CceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~--~d~IG~v~l~L~~l~~~  151 (173)
                      +..|||++++ . ..++||+++++++||.|||+|.|. ++.    ...|.|.|||++.++.  +++||++.+++.++...
T Consensus        19 ~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~   93 (123)
T cd08382          19 RLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPL   93 (123)
T ss_pred             CCCCcEEEEEECCccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHcccc
Confidence            3569999999 3 567899999999999999999999 864    4589999999999876  47999999999998533


Q ss_pred             c-ccceeEeCccCCc--cccccC
Q psy12096        152 Q-TIEEWRELQSVEG--EGGQIG  171 (173)
Q Consensus       152 ~-~~~~W~~L~p~~~--~~~~~~  171 (173)
                      . ....|++|.+...  .+.+.|
T Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~G  116 (123)
T cd08382          94 KDTGYQRLDLRKLKKSDNLSVRG  116 (123)
T ss_pred             CCCccceeEeecCCCCCCceEee
Confidence            3 3478999976654  334444

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.61  E-value=4.7e-15  Score=108.17  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096         77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE  155 (173)
Q Consensus        77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~  155 (173)
                      ..||||+++ ...+.+|++++++.||.|||+|.|. +..  + ...|.|.|||++.++++++||++.+++..+..+  ..
T Consensus        21 ~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~   94 (119)
T cd08377          21 KSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG--ER   94 (119)
T ss_pred             CCCcEEEEEECCEeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC--Cc
Confidence            469999998 5557899999999999999999999 753  2 358999999999999999999999999887533  46


Q ss_pred             eeEeCccCCccccccCC
Q psy12096        156 EWRELQSVEGEGGQIGK  172 (173)
Q Consensus       156 ~W~~L~p~~~~~~~~~~  172 (173)
                      .|+.|.+....++..|+
T Consensus        95 ~~~~l~~~~~~~~~~G~  111 (119)
T cd08377          95 KWYALKDKKLRTRAKGS  111 (119)
T ss_pred             eEEECcccCCCCceeeE
Confidence            89999887766666664

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.60  E-value=1.7e-15  Score=110.21  Aligned_cols=82  Identities=17%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccC-CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         76 EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADA-MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        76 ~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      +..||||+++    .+...+|+++++++||.|||+|.|. +...++ ....|.|.|||+|+++++++||++.+++.++. 
T Consensus        21 ~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~-   98 (111)
T cd04041          21 GSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI-   98 (111)
T ss_pred             CCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh-
Confidence            4579999997    2346899999999999999999998 765443 34689999999999999999999999999886 


Q ss_pred             ccccceeEeCc
Q psy12096        151 AQTIEEWRELQ  161 (173)
Q Consensus       151 ~~~~~~W~~L~  161 (173)
                        ....|+++.
T Consensus        99 --~~~~~~~~~  107 (111)
T cd04041          99 --EDRNWMGRR  107 (111)
T ss_pred             --cCCCCCccc
Confidence              235688774

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.60  E-value=4.7e-15  Score=110.71  Aligned_cols=82  Identities=15%  Similarity=0.267  Sum_probs=70.3

Q ss_pred             CCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc--cc
Q psy12096         77 IANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL--AQ  152 (173)
Q Consensus        77 ~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~--~~  152 (173)
                      ..||||+++ .. ...+|++++++.||.|||+|.|. ++.    ...|.|.|||++.++.+++||++.++|.++..  ..
T Consensus        34 ~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~  108 (132)
T cd04014          34 LLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTE-VHN----GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSG  108 (132)
T ss_pred             CcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEE-cCC----CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCC
Confidence            569999999 33 34799999999999999999999 862    46899999999999999999999999998875  45


Q ss_pred             ccceeEeCccC
Q psy12096        153 TIEEWRELQSV  163 (173)
Q Consensus       153 ~~~~W~~L~p~  163 (173)
                      ..+.|++|++.
T Consensus       109 ~~~~w~~L~~~  119 (132)
T cd04014         109 SFDLWVDLEPQ  119 (132)
T ss_pred             cccEEEEccCC
Confidence            56899999853

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=7.4e-15  Score=106.68  Aligned_cols=93  Identities=22%  Similarity=0.247  Sum_probs=74.0

Q ss_pred             cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||+++ .+ ...+|+++++ .||.|||+|.|. ++..++....|.|.+||.+....+.++|.+.|..  +..+..
T Consensus        16 ~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~--~~~~~~   91 (117)
T cd08383          16 GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSK--LDLGQG   91 (117)
T ss_pred             CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecC--cCCCCc
Confidence            5679999998 33 3579999989 999999999999 8876666568899999988777777777766554  444556


Q ss_pred             cceeEeCccCCccccccCC
Q psy12096        154 IEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       154 ~~~W~~L~p~~~~~~~~~~  172 (173)
                      .+.|++|++....+++.|+
T Consensus        92 ~~~w~~L~~~~~~~~~~G~  110 (117)
T cd08383          92 KDEWFPLTPVDPDSEVQGS  110 (117)
T ss_pred             ceeEEECccCCCCCCcCce
Confidence            7899999998877777775

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.59  E-value=5.8e-15  Score=108.55  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=70.4

Q ss_pred             cCCCccEEEe--cC------eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCC----CCCCceeEEEEE
Q psy12096         76 EIANESMKIA--DK------VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDR----FSKHDQIGEVKV  143 (173)
Q Consensus        76 ~~~dPyVkv~--~~------~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~----~~~~d~IG~v~l  143 (173)
                      +..||||+++  ..      .+.||+++++++||+|||+|.|. +..+..  ..|.|.|||+|.    ++++++||++.+
T Consensus        19 g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~~--~~l~~~V~d~d~~~~~~~~~d~iG~~~i   95 (120)
T cd04048          19 SKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEEV--QKLRFEVYDVDSKSKDLSDHDFLGEAEC   95 (120)
T ss_pred             CCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEee--eEEEEEEEEecCCcCCCCCCcEEEEEEE
Confidence            4569999998  21      25899999999999999999998 654443  379999999997    889999999999


Q ss_pred             eCCccccccccceeEeCcc
Q psy12096        144 ALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       144 ~L~~l~~~~~~~~W~~L~p  162 (173)
                      ++.++........|+.|.+
T Consensus        96 ~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          96 TLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             EHHHHhcCCCcEEEEEccC
Confidence            9999976666778999944

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.58  E-value=1.2e-14  Score=107.22  Aligned_cols=85  Identities=18%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             cCCCccEEEe-c---CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA-D---KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~-~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      +..||||+++ .   ....||+++++++||.|||+|.|. +...  ....|.|.|||++.++++++||++.++|......
T Consensus        20 ~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~   96 (126)
T cd04043          20 GLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPKRFG   96 (126)
T ss_pred             CCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHHHcC
Confidence            4579999997 2   346899999999999999999999 8754  2458999999999999999999999999876432


Q ss_pred             ---cccceeEeCccC
Q psy12096        152 ---QTIEEWRELQSV  163 (173)
Q Consensus       152 ---~~~~~W~~L~p~  163 (173)
                         ...+.|++|.+.
T Consensus        97 ~~~~~~~~w~~l~~~  111 (126)
T cd04043          97 DDGLPREIWLDLDTQ  111 (126)
T ss_pred             CCCCCceEEEEcCCC
Confidence               245689999863

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.58  E-value=1.6e-14  Score=111.91  Aligned_cols=85  Identities=12%  Similarity=0.114  Sum_probs=71.4

Q ss_pred             eccCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         74 KKEIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        74 k~~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      ..+..||||+++ .+ ...||++++++.||.|||+|.|. +...   ...|.|.|||+|.++ +++||++.++++++..+
T Consensus        54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g  128 (158)
T cd04015          54 GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIY-CAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG  128 (158)
T ss_pred             CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEE-ccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC
Confidence            346679999998 33 34699999999999999999998 7532   247999999999886 58999999999999777


Q ss_pred             cccceeEeCccC
Q psy12096        152 QTIEEWRELQSV  163 (173)
Q Consensus       152 ~~~~~W~~L~p~  163 (173)
                      ...+.|++|...
T Consensus       129 ~~~~~w~~L~~~  140 (158)
T cd04015         129 EPVEGWLPILDS  140 (158)
T ss_pred             CCcceEEECcCC
Confidence            777899999764

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.58  E-value=1.7e-14  Score=106.34  Aligned_cols=87  Identities=20%  Similarity=0.157  Sum_probs=73.7

Q ss_pred             cCCCccEEEe-cCeEEeecccCC-CCCCeeecEEEecccCcccC-CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPW-VVVSIFIERQILEGVPYADA-MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l-~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~  152 (173)
                      ...||||++. ....++|++.++ +.||.|||+|.|. ++.... ....|.|.|||.+.++++++||++.++|.++...+
T Consensus        20 ~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~   98 (124)
T cd04049          20 GKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG   98 (124)
T ss_pred             CCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCC
Confidence            3569999998 555678888874 8999999999999 876532 23589999999999999999999999999997677


Q ss_pred             ccceeEeCccC
Q psy12096        153 TIEEWRELQSV  163 (173)
Q Consensus       153 ~~~~W~~L~p~  163 (173)
                      ....|+.|.|.
T Consensus        99 ~~~~~~~l~p~  109 (124)
T cd04049          99 VEPGTAELVPA  109 (124)
T ss_pred             CCcCceEeecc
Confidence            77899999885

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.57  E-value=9.4e-15  Score=106.34  Aligned_cols=84  Identities=10%  Similarity=0.080  Sum_probs=69.6

Q ss_pred             ccCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc-cc
Q psy12096         75 KEIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-LA  151 (173)
Q Consensus        75 ~~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~-~~  151 (173)
                      .+..||||++. .. ...+|++++++.||.|||+|.|. +...  ....|.|.|||++.+ ++++||++.++|+++. ..
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFL-VTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEE-ecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            35679999998 33 46799999999999999999999 7642  345899999999999 8999999999999883 23


Q ss_pred             cccceeEeCcc
Q psy12096        152 QTIEEWRELQS  162 (173)
Q Consensus       152 ~~~~~W~~L~p  162 (173)
                      ...+.|+.|+.
T Consensus        86 ~~~~~w~~L~~   96 (111)
T cd04052          86 SVGQQWFPLSG   96 (111)
T ss_pred             hccceeEECCC
Confidence            34579999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.55  E-value=4.1e-14  Score=106.32  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=67.1

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc----ccCC--CCEEEEEEEEcCCCCCCceeEEEEE-eCCc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY----ADAM--NKTLVFAIFDFDRFSKHDQIGEVKV-ALCQ  147 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~----~~l~--~~~L~~~V~D~d~~~~~d~IG~v~l-~L~~  147 (173)
                      +..||||++. ...+.||+++++|+||.|||+|.|..+..    +++.  ...|.|.|||+|..+++++||++.+ ++..
T Consensus        20 g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~   99 (135)
T cd04017          20 GLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVK   99 (135)
T ss_pred             CCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeee
Confidence            4579999998 66688999999999999999999972221    1111  2479999999999999999999986 4444


Q ss_pred             ccc---ccccceeEeCccC
Q psy12096        148 IDL---AQTIEEWRELQSV  163 (173)
Q Consensus       148 l~~---~~~~~~W~~L~p~  163 (173)
                      +..   ......|++|...
T Consensus       100 ~~~~~~~~~~~~W~~L~~~  118 (135)
T cd04017         100 LDLEEDFPPKLQWFPIYKG  118 (135)
T ss_pred             cccCCCCCCCceEEEeecC
Confidence            432   3455799999643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.55  E-value=2.9e-14  Score=103.49  Aligned_cols=87  Identities=20%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||++.  .....+|+++.++.||.|||+|.|. ++..  ....+.|.|||++.++++++||++.+++.++..+..
T Consensus        18 ~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~   94 (115)
T cd04040          18 GKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEET   94 (115)
T ss_pred             CCCCCeEEEEECCCcceeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCc
Confidence            3569999998  3345799999999999999999999 7643  346899999999999999999999999999876666


Q ss_pred             cceeEeCccCCc
Q psy12096        154 IEEWRELQSVEG  165 (173)
Q Consensus       154 ~~~W~~L~p~~~  165 (173)
                      .+.|++|.+..+
T Consensus        95 ~~~~~~L~~~g~  106 (115)
T cd04040          95 TELTLPLDGQGG  106 (115)
T ss_pred             EEEEEECcCCCC
Confidence            789999987643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.53  E-value=4.8e-14  Score=103.98  Aligned_cols=88  Identities=13%  Similarity=-0.047  Sum_probs=71.9

Q ss_pred             cCCCccEEEe-cC-eEEeecccC-CCCCCeeecEEEecccCcccC--CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         76 EIANESMKIA-DK-VAEETGMPP-WVVVSIFIERQILEGVPYADA--MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        76 ~~~dPyVkv~-~~-~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l--~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      ...||||.++ .. .+++|++++ ++.||.|||+|.|. ++...+  ....|.|.|||++.++.+++||++.++|.++..
T Consensus        19 ~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~   97 (125)
T cd04051          19 GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD   97 (125)
T ss_pred             cCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence            4579999998 44 678999975 58999999999999 876532  245899999999999999999999999999865


Q ss_pred             cccc-----ceeEeCccCC
Q psy12096        151 AQTI-----EEWRELQSVE  164 (173)
Q Consensus       151 ~~~~-----~~W~~L~p~~  164 (173)
                      ....     ..||.|....
T Consensus        98 ~~~~~~~~~~~~~~l~~~~  116 (125)
T cd04051          98 GASPAGELRFLSYQLRRPS  116 (125)
T ss_pred             ccCCCCcceeEEEEeECCC
Confidence            5442     5899997543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.53  E-value=5e-14  Score=106.94  Aligned_cols=92  Identities=12%  Similarity=0.038  Sum_probs=74.7

Q ss_pred             cCCCccEEEe----c----------CeEEeecccCCCCCCee-ecEEEecccCcccCCCCEEEEEEEEcCCCCC---Cce
Q psy12096         76 EIANESMKIA----D----------KVAEETGMPPWVVVSIF-IERQILEGVPYADAMNKTLVFAIFDFDRFSK---HDQ  137 (173)
Q Consensus        76 ~~~dPyVkv~----~----------~~k~kTkv~kktlnP~w-nEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~---~d~  137 (173)
                      +..||||+++    .          ..++||+++++++||+| ||+|.|. +..    +..|.|.|||++..++   +++
T Consensus        19 g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L~v~V~D~~~~~~~~~~d~   93 (137)
T cd08691          19 FNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLP----TDVLEIEVKDKFAKSRPIIRRF   93 (137)
T ss_pred             CCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCC----CCEEEEEEEecCCCCCccCCce
Confidence            4579999998    1          23799999999999999 9999999 753    3479999999876544   699


Q ss_pred             eEEEEEeCCcccccc---ccceeEeCccCCccccccCC
Q psy12096        138 IGEVKVALCQIDLAQ---TIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       138 IG~v~l~L~~l~~~~---~~~~W~~L~p~~~~~~~~~~  172 (173)
                      ||++.+++.++....   ....||.|..+..-+.|+|.
T Consensus        94 lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~  131 (137)
T cd08691          94 LGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQ  131 (137)
T ss_pred             EEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEE
Confidence            999999999985332   24579999988888888874

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.51  E-value=8.8e-14  Score=105.14  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      +..||||+++ ...+.||+++++++||.|||+|.|. +..  .....|.|.|||+|.++++++||++.++|.++..
T Consensus        34 g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          34 GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK  106 (136)
T ss_pred             CCcCcEEEEEECCEeeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence            4579999998 6668999999999999999999999 754  3345899999999999999999999999988854

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.51  E-value=1.8e-13  Score=101.71  Aligned_cols=89  Identities=10%  Similarity=0.097  Sum_probs=71.4

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      +..|||+++. ...+.+|++++++.||.|||+|.|. +...   ...|.|.|||++.++ +++||++.++++.+.  ...
T Consensus        22 g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~--~~~   94 (126)
T cd04046          22 GGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSNLLC-DEFLGQATLSADPND--SQT   94 (126)
T ss_pred             CCcCccEEEEECCEEEEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECCCCC-CCceEEEEEecccCC--CcC
Confidence            3579999998 5668999999999999999999998 6532   458999999999875 799999999998753  344


Q ss_pred             ceeEeCccC--CccccccC
Q psy12096        155 EEWRELQSV--EGEGGQIG  171 (173)
Q Consensus       155 ~~W~~L~p~--~~~~~~~~  171 (173)
                      ..|+.|+..  ...+++.|
T Consensus        95 ~~~~~l~~~~~~~~~~~~G  113 (126)
T cd04046          95 LRTLPLRKRGRDAAGEVPG  113 (126)
T ss_pred             ceEEEcccCCCCCCCCCCC
Confidence            688899643  35556655

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.50  E-value=1.4e-13  Score=102.27  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             cCCCccEEEe-cCe-EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-DKV-AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~~-k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ...||||+++ ... +.+|+++++++||.|||+|.|. +..    ...|.|.|||++..+.+++||++.++|.++...+.
T Consensus        20 ~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~   94 (125)
T cd04021          20 FKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHN   94 (125)
T ss_pred             CCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcC
Confidence            3479999998 333 7899999999999999999999 753    35899999999999999999999999988753322


Q ss_pred             -----cceeEeCccCCc-cccccC
Q psy12096        154 -----IEEWRELQSVEG-EGGQIG  171 (173)
Q Consensus       154 -----~~~W~~L~p~~~-~~~~~~  171 (173)
                           ...|++|..... -+++.|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~G  118 (125)
T cd04021          95 GKLENVKLTLNLSSENKGSSVKVG  118 (125)
T ss_pred             CCccceEEEEEEEccCCCcceeee
Confidence                 235888874442 335555

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.50  E-value=1.2e-13  Score=102.42  Aligned_cols=68  Identities=15%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEc-------CCCCCCceeEEEE
Q psy12096         76 EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDF-------DRFSKHDQIGEVK  142 (173)
Q Consensus        76 ~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~-------d~~~~~d~IG~v~  142 (173)
                      +..||||+++   .   ..+.||+++++|+||+|||+|.|. ++.    ...|.+.|||+       |..+.|+++|.+.
T Consensus        13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~   87 (118)
T cd08686          13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQ   87 (118)
T ss_pred             CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEcccccccccccCcccEEEEEE
Confidence            4579999997   1   357999999999999999999999 862    45999999998       5778899999988


Q ss_pred             EeCCcc
Q psy12096        143 VALCQI  148 (173)
Q Consensus       143 l~L~~l  148 (173)
                      +.|+.-
T Consensus        88 i~Ld~~   93 (118)
T cd08686          88 IQLDPQ   93 (118)
T ss_pred             EEECHH
Confidence            887643

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.50  E-value=8e-14  Score=104.60  Aligned_cols=72  Identities=13%  Similarity=-0.042  Sum_probs=60.6

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      ...||||+++ ...+.||++++++.||+|||+|.|. ..... ....|.|.|||+|.++++++||++.++|....
T Consensus        46 g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~-~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          46 TSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG-SVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCeEEEEEECCccccCceecCCCCCcCCCEEEEe-cccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence            3569999999 5558999999999999999999997 32211 34589999999999999999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.50  E-value=8e-14  Score=103.07  Aligned_cols=87  Identities=13%  Similarity=0.173  Sum_probs=72.5

Q ss_pred             cCCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ...||||+++ . ..+.+|++++++.||.|||+|.|. +...   ...|.|.|||++.++++++||++.++|.++... .
T Consensus        20 g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~   94 (120)
T cd04045          20 GKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-N   94 (120)
T ss_pred             CCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-C
Confidence            4579999998 3 346899999999999999999998 7543   358999999999999999999999999988644 6


Q ss_pred             cceeEeCccCCccc
Q psy12096        154 IEEWRELQSVEGEG  167 (173)
Q Consensus       154 ~~~W~~L~p~~~~~  167 (173)
                      .+.||.|.......
T Consensus        95 ~~~~~~~~~~~~~~  108 (120)
T cd04045          95 EDGKYVEYDDEEER  108 (120)
T ss_pred             CCceEEecCCCcce
Confidence            68899987765443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.47  E-value=2.7e-13  Score=104.76  Aligned_cols=63  Identities=25%  Similarity=0.418  Sum_probs=55.2

Q ss_pred             EeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096         90 EETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus        90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      .+|+++++++||.|||+|.|. +..  +....|.|.|||++    +++||++.++++++. ..+.++||+|
T Consensus        91 ~kT~v~~~tlnP~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676          91 KVTEVKPQTLNPVWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             EecceecCCCCCccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            789999999999999999999 753  34568999999998    889999999999987 4567999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.46  E-value=2.8e-13  Score=99.18  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             CCCccEEEe-cC--eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         77 IANESMKIA-DK--VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        77 ~~dPyVkv~-~~--~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ..||||++. ..  .+.+|++++++.||.|||+|.|. +..   ....|.|.|||++.++++++||++.++|.++...+.
T Consensus        23 ~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~   98 (124)
T cd04044          23 TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE   98 (124)
T ss_pred             CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence            469999998 33  68999999999999999999999 862   245899999999999999999999999999875555


Q ss_pred             cc-eeEeCc
Q psy12096        154 IE-EWRELQ  161 (173)
Q Consensus       154 ~~-~W~~L~  161 (173)
                      .. .|+.|.
T Consensus        99 ~~~~~~~~~  107 (124)
T cd04044          99 QENLTKNLL  107 (124)
T ss_pred             ccCcchhhh
Confidence            54 355554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.45  E-value=2.6e-13  Score=103.90  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=62.8

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      ...||||++. ...+.||+++++++||.|||+|.|. ++..   ...|.|.|||+|.++++++||++.+++..+..
T Consensus        20 ~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~   91 (145)
T cd04038          20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVE   91 (145)
T ss_pred             CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhh
Confidence            4579999998 6678999999999999999999999 8653   45899999999999999999999999888743

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.45  E-value=9.9e-13  Score=100.95  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=74.0

Q ss_pred             CCCccEEEe-cCeE-EeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCC-CC---CCceeEEEEEeCCcccc
Q psy12096         77 IANESMKIA-DKVA-EETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDR-FS---KHDQIGEVKVALCQIDL  150 (173)
Q Consensus        77 ~~dPyVkv~-~~~k-~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~-~~---~~d~IG~v~l~L~~l~~  150 (173)
                      ..+||+.++ .+.+ .||+++.++.||.|+|.|.|. .... .  ..+.|.||+.+. .+   .+++||.+.||+..+..
T Consensus        26 ~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~-~~~~-~--~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~  101 (146)
T cd04013          26 KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFS-NLPP-V--SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS  101 (146)
T ss_pred             cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEec-CCCc-c--cEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC
Confidence            458999999 4444 699999999999999999998 4321 2  479999986543 32   57899999999999987


Q ss_pred             ccccceeEeCccCCccccccCC
Q psy12096        151 AQTIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       151 ~~~~~~W~~L~p~~~~~~~~~~  172 (173)
                      +...+.||+|++..+.+++||+
T Consensus       102 ~~~ve~Wfpl~~~~~~~~~~~~  123 (146)
T cd04013         102 RQFVEKWYPVSTPKGNGKSGGK  123 (146)
T ss_pred             CCcccEEEEeecCCCCCccccc
Confidence            7788999999998888766654

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.44  E-value=3.6e-13  Score=99.95  Aligned_cols=72  Identities=22%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             cCCCccEEEe-cC--eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         76 EIANESMKIA-DK--VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        76 ~~~dPyVkv~-~~--~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      +..||||++. ..  .+.||+++++++||.|||+|.|. +...  ....|.|+|||+|.++++++||++.++|.+...
T Consensus        19 g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          19 GKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence            4579999998 22  24678889999999999999998 6543  245899999999999999999999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.43  E-value=2.8e-13  Score=102.47  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             CCCccEEEe----cCeEEeecccCCCCC--CeeecEEEecccCc---------------------ccCCCCEEEEEEEEc
Q psy12096         77 IANESMKIA----DKVAEETGMPPWVVV--SIFIERQILEGVPY---------------------ADAMNKTLVFAIFDF  129 (173)
Q Consensus        77 ~~dPyVkv~----~~~k~kTkv~kktln--P~wnEtf~F~gV~~---------------------~~l~~~~L~~~V~D~  129 (173)
                      .+|||||+.    ...+++|.++++++|  |.||+.|.|+ ++.                     +.+....|.++|||+
T Consensus        24 ~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~  102 (133)
T cd08374          24 MSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDN  102 (133)
T ss_pred             ccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEEC
Confidence            379999998    356899999999999  9999999999 877                     566678999999999


Q ss_pred             CCCCCCceeEEEEEeCCccccc
Q psy12096        130 DRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus       130 d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      |.+++||+||++.++|..+...
T Consensus       103 D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374         103 DKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             cccCCCCcceEEEEEhhhcccc
Confidence            9999999999999999987543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.41  E-value=7.8e-13  Score=123.62  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             ccCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096         75 KEIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  152 (173)
Q Consensus        75 ~~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~  152 (173)
                      ...+||||++.  .+++.||+++++++||+|||+|.|. +...   ...|.|+|||+|.++. ++||++.|||+++..++
T Consensus        74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge  148 (868)
T PLN03008         74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGE  148 (868)
T ss_pred             cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCC
Confidence            35679999999  4556799999999999999999999 8752   3489999999999984 89999999999998888


Q ss_pred             ccceeEeCccCC
Q psy12096        153 TIEEWRELQSVE  164 (173)
Q Consensus       153 ~~~~W~~L~p~~  164 (173)
                      ..+.|++|....
T Consensus       149 ~vd~Wl~Ll~~~  160 (868)
T PLN03008        149 RISGWFPVLGAS  160 (868)
T ss_pred             ceEEEEEccccC
Confidence            889999996653

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.34  E-value=2.3e-12  Score=92.98  Aligned_cols=70  Identities=16%  Similarity=0.305  Sum_probs=57.9

Q ss_pred             cCCCccEEEe--cC-----eEEeecccCCCCCCeeecEEEecccCcccCC----CCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096         76 EIANESMKIA--DK-----VAEETGMPPWVVVSIFIERQILEGVPYADAM----NKTLVFAIFDFDRFSKHDQIGEVKVA  144 (173)
Q Consensus        76 ~~~dPyVkv~--~~-----~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~----~~~L~~~V~D~d~~~~~d~IG~v~l~  144 (173)
                      +..|||++++  ..     .+++|+++++++||.|| +|.|. +.  .+.    ...|.|.|||++.++++++||++.++
T Consensus        19 ~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~-~~--~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~   94 (110)
T cd04047          19 GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP-LQ--KLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETT   94 (110)
T ss_pred             CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE-HH--HhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEE
Confidence            3579999998  11     25899999999999999 67766 32  222    45899999999999999999999999


Q ss_pred             CCccc
Q psy12096        145 LCQID  149 (173)
Q Consensus       145 L~~l~  149 (173)
                      +..+.
T Consensus        95 l~~l~   99 (110)
T cd04047          95 LDELL   99 (110)
T ss_pred             HHHHh
Confidence            99886

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.32  E-value=8.6e-12  Score=91.70  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             cCCCccEEEe----c---CeEEeecccCCCC-CCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096         76 EIANESMKIA----D---KVAEETGMPPWVV-VSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ  147 (173)
Q Consensus        76 ~~~dPyVkv~----~---~~k~kTkv~kktl-nP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~  147 (173)
                      ...||||+++    .   ..+.||++++++. ||.|||+|.|. +...+.  ..|.|.|||++.. ++++||++.++|.+
T Consensus        23 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~~--~~l~~~V~d~~~~-~~~~iG~~~~~l~~   98 (128)
T cd00275          23 SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPEL--AFLRFVVYDEDSG-DDDFLGQACLPLDS   98 (128)
T ss_pred             CccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCCe--EEEEEEEEeCCCC-CCcEeEEEEEEhHH
Confidence            4569999987    1   3468999988775 99999999999 764432  3799999999988 89999999999998


Q ss_pred             cccccccceeEeCccCCcc
Q psy12096        148 IDLAQTIEEWRELQSVEGE  166 (173)
Q Consensus       148 l~~~~~~~~W~~L~p~~~~  166 (173)
                      +..+   ..|+.|....+.
T Consensus        99 l~~g---~~~~~l~~~~~~  114 (128)
T cd00275          99 LRQG---YRHVPLLDSKGE  114 (128)
T ss_pred             hcCc---eEEEEecCCCCC
Confidence            8532   468888765554

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.24  E-value=1.2e-11  Score=124.26  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=71.1

Q ss_pred             CCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096         77 IANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus        77 ~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      ..||||.+. . +.++||+++++++||.|||.|.|. +..+.. +..|.|.|||+|.|+++ .+|.+.++|.++-.++..
T Consensus      1998 ~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~-~~~p~~-~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv~~~~~ 2074 (2102)
T PLN03200       1998 NTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWA-FDSPPK-GQKLHISCKSKNTFGKS-SLGKVTIQIDRVVMEGTY 2074 (2102)
T ss_pred             CCCCeEEEEECCCCcccccccCCCCCCCcccceeee-ecCCCC-CCceEEEEEecCccCCC-CCceEEEEHHHHhcCcee
Confidence            459999998 4 448899999999999999999977 544332 34699999999999655 999999999999878888


Q ss_pred             ceeEeCccC
Q psy12096        155 EEWRELQSV  163 (173)
Q Consensus       155 ~~W~~L~p~  163 (173)
                      +.||.|.+.
T Consensus      2075 ~~~~~L~~~ 2083 (2102)
T PLN03200       2075 SGEYSLNPE 2083 (2102)
T ss_pred             eeeeecCcc
Confidence            999999864

>PLN02223 phosphoinositide phospholipase C

Probab=99.20  E-value=5.2e-11  Score=107.34  Aligned_cols=82  Identities=12%  Similarity=0.145  Sum_probs=68.3

Q ss_pred             CCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         77 IANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        77 ~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      ..||||++.      +..+++|.+..++.||+|||+|.|. |...+++  .|+|.|+|+|..+.++|+|+..+|+.++..
T Consensus       434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSELIE  510 (537)
T ss_pred             CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCce--EEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence            468999998      4456788888889999999999999 9887776  799999999999999999999999999875


Q ss_pred             ccccceeEeCccCC
Q psy12096        151 AQTIEEWRELQSVE  164 (173)
Q Consensus       151 ~~~~~~W~~L~p~~  164 (173)
                      +   -.+.+|....
T Consensus       511 G---yR~VpL~~~~  521 (537)
T PLN02223        511 G---IRAVPLYDER  521 (537)
T ss_pred             C---ceeEeccCCC
Confidence            5   3455665443

>PLN02952 phosphoinositide phospholipase C

Probab=99.18  E-value=7e-11  Score=108.05  Aligned_cols=82  Identities=13%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         78 ANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        78 ~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      .||||++.      +..+++|+++.++.||+|||+|.|. +..++++  .|+|.|||+|..+.++++|+..+|+.++..+
T Consensus       497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G  573 (599)
T PLN02952        497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSELRPG  573 (599)
T ss_pred             CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHhcCC
Confidence            48999987      4567899999999999999999999 8877765  7999999999999999999999999999755


Q ss_pred             cccceeEeCccCCc
Q psy12096        152 QTIEEWRELQSVEG  165 (173)
Q Consensus       152 ~~~~~W~~L~p~~~  165 (173)
                      .   .|++|....+
T Consensus       574 y---R~VpL~~~~G  584 (599)
T PLN02952        574 I---RSVPLHDKKG  584 (599)
T ss_pred             c---eeEeCcCCCC
Confidence            3   4888865443

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.16  E-value=1.8e-10  Score=77.68  Aligned_cols=64  Identities=22%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             cCCCccEEEe--c--CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEE
Q psy12096         76 EIANESMKIA--D--KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK  142 (173)
Q Consensus        76 ~~~dPyVkv~--~--~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~  142 (173)
                      +..+||+++.  .  ..+++|++++++.+|.|||+|.|. +...+..  .|.|.|||++.++++++||++.
T Consensus        18 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   18 GKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPDLD--SLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             SSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred             Ccccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence            3568999998  2  257999999999999999999999 8877665  4999999999999999999973

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059|consensus

Probab=99.15  E-value=5.4e-11  Score=108.79  Aligned_cols=92  Identities=21%  Similarity=0.325  Sum_probs=82.7

Q ss_pred             cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +.+|||.-+.  .....+|.++-+++.|.|.|.|.|. ||..   -+.|.|.|||.| +++|+.||.+.|.-.++....+
T Consensus        24 g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~---F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~   98 (800)
T KOG2059|consen   24 GMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFE-IPRT---FRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPG   98 (800)
T ss_pred             CCcCcceEEeecchhhhhhhhhhhhcCCccccceEEe-cCcc---eeeEEEEEeccc-cccccccceeeeeHHHHhhCCC
Confidence            4579998887  5557899999999999999999999 8752   358999999999 9999999999999888887778


Q ss_pred             cceeEeCccCCccccccCC
Q psy12096        154 IEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       154 ~~~W~~L~p~~~~~~~~~~  172 (173)
                      .+.|+.|++...+++||||
T Consensus        99 ~d~W~~L~~VD~dsEVQG~  117 (800)
T KOG2059|consen   99 KDTWFSLQPVDPDSEVQGK  117 (800)
T ss_pred             CccceeccccCCChhhcee
Confidence            8999999999999999997

>cd00030 C2 C2 domain

Probab=99.11  E-value=5e-10  Score=76.11  Aligned_cols=82  Identities=24%  Similarity=0.311  Sum_probs=68.7

Q ss_pred             cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc-ccc
Q psy12096         76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-LAQ  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~-~~~  152 (173)
                      ...+|||.+. .. ...+|.+..++.||.|||.|.|. +...  ....|.|.||+.+..+.+.+||.+.+++..+. ...
T Consensus        18 ~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~   94 (102)
T cd00030          18 GKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK   94 (102)
T ss_pred             CCCCcEEEEEeccCceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCC
Confidence            3578999998 43 67899999999999999999999 7642  34589999999999888899999999999886 555


Q ss_pred             ccceeEeC
Q psy12096        153 TIEEWREL  160 (173)
Q Consensus       153 ~~~~W~~L  160 (173)
                      ....|++|
T Consensus        95 ~~~~~~~l  102 (102)
T cd00030          95 EGELWLPL  102 (102)
T ss_pred             cCcceecC
Confidence            66789875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1013|consensus

Probab=99.09  E-value=1.2e-10  Score=98.84  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=103.1

Q ss_pred             CChhhhheeeeeeee-eecCCCCchhhhhhhhccCCcccCCCCCC-CcccceecchheecccccceeeEEee-------e
Q psy12096          4 FDKREVVQEVLNVIS-FNASTLPPLVADSIKRKTQATTTTTPLPE-DEEEDLEMTEAFEDVSEELSSTVASI-------K   74 (173)
Q Consensus         4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~lv~~i-------k   74 (173)
                      |.+-|-+||.=++|. +++.-++- ..--+++...  .-....++ ++++.+.+.+.|......+.+.++..       .
T Consensus       174 ~~~~~sqGq~r~~lkKl~p~q~k~-f~~cl~~~lp--~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDs  250 (362)
T KOG1013|consen  174 KTHNESQGQSRVSLKKLKPLQRKS-FNICLEKSLP--SERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDS  250 (362)
T ss_pred             cccccCcccchhhhhccChhhcch-hhhhhhccCC--cccccccchhhccceeeeeccCcCCCceEEEEEEeeeeecccc
Confidence            455566777666663 55555532 1111222221  11123334 56788999999999999998887653       3


Q ss_pred             ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCC
Q psy12096         75 KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC  146 (173)
Q Consensus        75 ~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~  146 (173)
                      ++.+||||+..      .+.|+||.+.++++||.||+.|.|. +...+|....+.|+|||++..+.++++|...+.+.
T Consensus       251 ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  251 NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             CCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence            45679999987      4558999999999999999999999 99999999999999999999989999998776643

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.08  E-value=5.8e-10  Score=76.46  Aligned_cols=73  Identities=23%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             cCCCccEEEe--cC--eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA--DK--VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~--~~--~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      ...+|||++.  ..  ...+|++..++.||.|||+|.|. +....  ...|.|.|||.+..+.+.++|.+.+++.++...
T Consensus        19 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       19 GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence            3579999998  22  47999999999999999999999 76543  568999999999888889999999999887544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.06  E-value=3.7e-10  Score=103.30  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             CCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         77 IANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        77 ~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      ..||||++.      +..+++|++..++.||+|||+|.|. +..++++  .|+|.|+|+|....++|+|+..||+..+..
T Consensus       495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~  571 (598)
T PLN02230        495 PPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEIRQ  571 (598)
T ss_pred             CCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHhhC
Confidence            369999997      4456799999999999999999999 8887776  899999999999999999999999999865


Q ss_pred             ccccceeEeCccCC
Q psy12096        151 AQTIEEWRELQSVE  164 (173)
Q Consensus       151 ~~~~~~W~~L~p~~  164 (173)
                      +-   ....|....
T Consensus       572 Gy---R~V~L~~~~  582 (598)
T PLN02230        572 GI---HAVPLFNRK  582 (598)
T ss_pred             cc---ceEeccCCC
Confidence            42   244554443

>KOG1011|consensus

Probab=99.04  E-value=1.4e-10  Score=105.78  Aligned_cols=92  Identities=13%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             eccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----------CCCceeEEE
Q psy12096         74 KKEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----------SKHDQIGEV  141 (173)
Q Consensus        74 k~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----------~~~d~IG~v  141 (173)
                      +.+.+||||... .+.|++|+++...+||+|||.|+|. ..+.   ...+.++|||.|.-           -.+||+|+.
T Consensus       312 ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfe-chns---tdrikvrvwded~dlksklrqkl~resddflgqt  387 (1283)
T KOG1011|consen  312 KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFE-CHNS---TDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQT  387 (1283)
T ss_pred             cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeee-ecCC---CceeEEEEecCcccHHHHHHHHhhhcccccccce
Confidence            457789999988 7789999999999999999999999 6542   34799999998853           357999999


Q ss_pred             EEeCCccccccccceeEeCccCCccccccC
Q psy12096        142 KVALCQIDLAQTIEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       142 ~l~L~~l~~~~~~~~W~~L~p~~~~~~~~~  171 (173)
                      .|.+..+  .++.+.||.|+-+.-.+-|-|
T Consensus       388 vievrtl--sgemdvwynlekrtdksavsg  415 (1283)
T KOG1011|consen  388 VIEVRTL--SGEMDVWYNLEKRTDKSAVSG  415 (1283)
T ss_pred             eEEEEec--ccchhhhcchhhccchhhccc
Confidence            9998776  456899999988766666555

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.02  E-value=4.9e-10  Score=102.28  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             CCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         77 IANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        77 ~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      ..||||++.      +..+++|+++.++.||+|||+|.|. +..++++  .|+|.|||+|..+.++|||+..+|+..+..
T Consensus       478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~Lr~  554 (581)
T PLN02222        478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWELSQ  554 (581)
T ss_pred             CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhhhC
Confidence            468999987      4567899999999999999999999 8877775  899999999998999999999999999865


Q ss_pred             c
Q psy12096        151 A  151 (173)
Q Consensus       151 ~  151 (173)
                      +
T Consensus       555 G  555 (581)
T PLN02222        555 G  555 (581)
T ss_pred             c
Confidence            4

>KOG2059|consensus

Probab=98.97  E-value=7.2e-10  Score=101.56  Aligned_cols=147  Identities=15%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             CChhhhheeeeeeeeeecCCCCchhhhhhhhccCCcccC--CCCCCCcc--cceecchheec--ccccceeeEE------
Q psy12096          4 FDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTT--TPLPEDEE--EDLEMTEAFED--VSEELSSTVA------   71 (173)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~l~~~~~~~~--~~~~l~~lv~------   71 (173)
                      +.||++||-|-            +.+|.|..-...-|-+  .|+-.|.+  |++++.+.+..  +...+.|.+.      
T Consensus        77 ~~~D~~IGKva------------i~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~  144 (800)
T KOG2059|consen   77 LKRDDIIGKVA------------IKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGL  144 (800)
T ss_pred             cccccccceee------------eeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccC
Confidence            56777776442            6777777666666655  34444433  56666666653  2222222221      


Q ss_pred             eeeccCCCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCcccC-------------CCCEEEEEEEE-cCCC
Q psy12096         72 SIKKEIANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPYADA-------------MNKTLVFAIFD-FDRF  132 (173)
Q Consensus        72 ~ik~~~~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-------------~~~~L~~~V~D-~d~~  132 (173)
                      -+.++..|||+.+.     .....+|++.++|.+|.|||.|.|. +..+.-             .-..|.+.+|+ ++..
T Consensus       145 P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~  223 (800)
T KOG2059|consen  145 PIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLV  223 (800)
T ss_pred             ceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-eccccccccchhcCcccCCceeeEEEeeccchhhh
Confidence            12345589999887     2123799999999999999999999 765410             12358889998 6677


Q ss_pred             CCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        133 SKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       133 ~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ..++|+|++.+++...........||.|+|.
T Consensus       224 ~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~  254 (800)
T KOG2059|consen  224 INDVFLGEVRVPVDVLRQKSSPAAWYYLQPR  254 (800)
T ss_pred             hhhhhceeEEeehhhhhhccCccceEEEecC
Confidence            7799999999999888755566899999997

>KOG1328|consensus

Probab=98.93  E-value=4.2e-10  Score=103.54  Aligned_cols=79  Identities=18%  Similarity=0.346  Sum_probs=68.0

Q ss_pred             EeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC---------------------------------CC--
Q psy12096         90 EETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF---------------------------------SK--  134 (173)
Q Consensus        90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~---------------------------------~~--  134 (173)
                      +-|.+.++|+||.|+|.|.|. |  +++....+.+-|||+|.-                                 +.  
T Consensus       179 katsvk~~TLnPkW~EkF~F~-I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~  255 (1103)
T KOG1328|consen  179 KATSVKKKTLNPKWSEKFQFT-I--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDC  255 (1103)
T ss_pred             hhcccccccCCcchhhheeee-h--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcc
Confidence            347788999999999999999 7  467677899999998841                                 22  


Q ss_pred             -CceeEEEEEeCCccccccccceeEeCccCCccccccCC
Q psy12096        135 -HDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       135 -~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~~~~~~  172 (173)
                       |||+|.+.+||..+.. .+.+.||.|+|++..++|||.
T Consensus       256 tDDFLGciNipl~EiP~-~Gld~WFkLepRS~~S~VqG~  293 (1103)
T KOG1328|consen  256 TDDFLGCINIPLAEIPP-DGLDQWFKLEPRSDKSKVQGQ  293 (1103)
T ss_pred             ccccccccccchhcCCc-chHHHHhccCcccccccccce
Confidence             7899999999999964 478999999999999999994

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.89  E-value=2.3e-09  Score=102.60  Aligned_cols=77  Identities=18%  Similarity=0.245  Sum_probs=65.5

Q ss_pred             cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||++.  .+.-+||+++++|+||+|||++..+ |.....  ..+.+.|+|||...+++.||.+.++|..+..+..
T Consensus      1059 g~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~-v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038        1059 GYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE-VLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred             CCCCceEEEEecceecccccchhccCCCCccccceEe-eecccc--ceEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence            4479999998  4557999999999999999999988 875443  4799999999999999999999999999876544


Q ss_pred             cc
Q psy12096        154 IE  155 (173)
Q Consensus       154 ~~  155 (173)
                      .+
T Consensus      1136 ~n 1137 (1227)
T COG5038        1136 TN 1137 (1227)
T ss_pred             cc
Confidence            33

>PLN02228 Phosphoinositide phospholipase C

Probab=98.89  E-value=5.3e-09  Score=95.34  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             CCCccEEEe------cCeEEeecccCCCCCCee-ecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         77 IANESMKIA------DKVAEETGMPPWVVVSIF-IERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        77 ~~dPyVkv~------~~~k~kTkv~kktlnP~w-nEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      ..||||++.      +..+.+|++++++.||+| ||+|.|. +...++.  .|+|.|+|+|..+.+++||+..+|+..+.
T Consensus       457 ~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~Lr  533 (567)
T PLN02228        457 PPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPELK  533 (567)
T ss_pred             CCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHhh
Confidence            368999987      445789999999999999 9999999 8877776  89999999999999999999999999986


Q ss_pred             cc
Q psy12096        150 LA  151 (173)
Q Consensus       150 ~~  151 (173)
                      .+
T Consensus       534 ~G  535 (567)
T PLN02228        534 SG  535 (567)
T ss_pred             CC
Confidence            44

>KOG0169|consensus

Probab=98.88  E-value=1.6e-09  Score=100.06  Aligned_cols=73  Identities=18%  Similarity=0.314  Sum_probs=64.1

Q ss_pred             cCCCccEEEe------cCeEEeec-ccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA------DKVAEETG-MPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~------~~~k~kTk-v~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      ...||||.+.      +..+.+|+ +..++.||.|+|+|.|. +..++++  .|+|.|+|+|..++|||+|+..+|+.++
T Consensus       639 ~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L  715 (746)
T KOG0169|consen  639 EISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSEL  715 (746)
T ss_pred             ccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEEEEecCCCCcccccceeeccHHHh
Confidence            4568998877      44578999 66688999999999999 9988887  8999999999999999999999999988


Q ss_pred             ccc
Q psy12096        149 DLA  151 (173)
Q Consensus       149 ~~~  151 (173)
                      ..+
T Consensus       716 ~~G  718 (746)
T KOG0169|consen  716 RQG  718 (746)
T ss_pred             hCc
Confidence            654

>KOG1328|consensus

Probab=98.86  E-value=7.6e-10  Score=101.89  Aligned_cols=74  Identities=19%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             ccCCCccEEEe--------cCeEEeecccCCCCCCeeecEEEecccCcccCC--CCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096         75 KEIANESMKIA--------DKVAEETGMPPWVVVSIFIERQILEGVPYADAM--NKTLVFAIFDFDRFSKHDQIGEVKVA  144 (173)
Q Consensus        75 ~~~~dPyVkv~--------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~--~~~L~~~V~D~d~~~~~d~IG~v~l~  144 (173)
                      ++.+||||.+.        .-...||+|+.+|+||+|+|+|.|. |+.+...  ..++.|+|.|+|-++.|||-|++.+.
T Consensus       965 NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~ 1043 (1103)
T KOG1328|consen  965 NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLE 1043 (1103)
T ss_pred             CCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCccccccccceEEEEeeccceecccccchHHHHh
Confidence            35679999988        1235899999999999999999999 9987665  46899999999999999999999999


Q ss_pred             CCccc
Q psy12096        145 LCQID  149 (173)
Q Consensus       145 L~~l~  149 (173)
                      |+.+.
T Consensus      1044 Lg~vp 1048 (1103)
T KOG1328|consen 1044 LGDVP 1048 (1103)
T ss_pred             hCCCC
Confidence            98874

>KOG1264|consensus

Probab=98.67  E-value=3.6e-08  Score=91.92  Aligned_cols=114  Identities=16%  Similarity=0.199  Sum_probs=77.0

Q ss_pred             hhhccCCcccCCCCCC-CcccceecchheecccccceeeEEeeeccCCCccEEEe------cCeEEee-cccCCCCCCee
Q psy12096         32 IKRKTQATTTTTPLPE-DEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIA------DKVAEET-GMPPWVVVSIF  103 (173)
Q Consensus        32 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~lv~~ik~~~~dPyVkv~------~~~k~kT-kv~kktlnP~w  103 (173)
                      ++.++-++..|-|.+. ..++-++|++...-.--+-   +....++.+.|||.+.      +..+++| .|..+.+||+|
T Consensus      1041 LqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRH---L~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiW 1117 (1267)
T KOG1264|consen 1041 LQPSSMRTEKFDPMNPESQRGLLPMTLSVKVLGARH---LPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIW 1117 (1267)
T ss_pred             ecchhcccccCCCCChHHhccccceEEEEEEeeccc---cccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCC
Confidence            4555555555555554 3444444554222100000   0011235667999987      4445554 56778999999


Q ss_pred             e-cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096        104 I-ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus       104 n-Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      | |+|+|. |..++++  .|+|.|+|.|+++...|||++..|+..+..+
T Consensus      1118 n~e~ftFe-I~nPe~A--~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1118 NPEKFTFE-IYNPEFA--FLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             CCcceEEE-eeCCceE--EEEEEEecccccCCcceeeeeecchhhhhcc
Confidence            9 999999 9888776  8999999999999999999999999887543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.59  E-value=2.5e-08  Score=70.49  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096         86 DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  160 (173)
Q Consensus        86 ~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L  160 (173)
                      +.-.+||.+.+...||.|+|||.|. |...+++..+|-|+|+.  ...+.+.||.+.+.|+++. .++.++|.++
T Consensus        33 kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~  103 (103)
T cd08684          33 KPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLEI  103 (103)
T ss_pred             CCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence            4557999999999999999999999 99999999999999997  5678899999999999886 4577899764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1013|consensus

Probab=98.55  E-value=1.4e-08  Score=86.39  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=86.9

Q ss_pred             cceecchheecccccceeeEEeee-------ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      +.+.+.+.|+.....+.+++...+       ...+|||+++.      +..+++|++..+++||.|||+..+.+|..+++
T Consensus        80 g~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~  159 (362)
T KOG1013|consen   80 GALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT  159 (362)
T ss_pred             cchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence            457788899988888887765432       35579999987      33469999999999999999999998888888


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      ....+++.|+|.+.+.+++++|+..++|..+.+.+..
T Consensus       160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k  196 (362)
T KOG1013|consen  160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRK  196 (362)
T ss_pred             hhhhhheeeccCcccccccCcccchhhhhccChhhcc
Confidence            7788999999999999999999999999888766544

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.40  E-value=1e-06  Score=84.97  Aligned_cols=71  Identities=14%  Similarity=0.322  Sum_probs=59.5

Q ss_pred             CCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         77 IANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        77 ~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      ..|||+.+.  ....-||+++++++||+|||+|... +  ..+. ..|.+.+||.+.+..+.++|.++++|..+...
T Consensus       458 ~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~-l--ns~~-d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~  530 (1227)
T COG5038         458 TVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL-L--NSFT-DPLNLSLYDFNSFKSDKVVGSTQLDLALLHQN  530 (1227)
T ss_pred             CCCceEEEEeccccCCccceeeccCCccccceEEEE-e--cccC-CceeEEEEeccccCCcceeeeEEechHHhhhc
Confidence            469999987  5556799999999999999998765 4  3444 48999999999999999999999998877533

>KOG1031|consensus

Probab=98.40  E-value=2.6e-07  Score=84.06  Aligned_cols=84  Identities=20%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             CccEEEe-cCeEEeecccCCCCCCeee-cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc----
Q psy12096         79 NESMKIA-DKVAEETGMPPWVVVSIFI-ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ----  152 (173)
Q Consensus        79 dPyVkv~-~~~k~kTkv~kktlnP~wn-Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~----  152 (173)
                      |-||++. ....+||.+..+++||.|| +.|.|. |...++++..|++++.|+|..+.||-||.+.+.++.+....    
T Consensus        26 dafveik~~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqa  104 (1169)
T KOG1031|consen   26 DAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQA  104 (1169)
T ss_pred             hheeEEEecccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhh
Confidence            6788887 6668999999999999999 889999 99999999999999999999999999999999988764331    


Q ss_pred             ------ccceeEeCccC
Q psy12096        153 ------TIEEWRELQSV  163 (173)
Q Consensus       153 ------~~~~W~~L~p~  163 (173)
                            ....|+++...
T Consensus       105 vhgkgtvisgw~pifdt  121 (1169)
T KOG1031|consen  105 VHGKGTVISGWFPIFDT  121 (1169)
T ss_pred             hcCCceEEeeeeeccee
Confidence                  22579998653

>PLN02270 phospholipase D alpha

Probab=98.36  E-value=1.5e-06  Score=81.83  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             eccCCCccEEEe--cCeEEeecccCCC-CCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         74 KKEIANESMKIA--DKVAEETGMPPWV-VVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        74 k~~~~dPyVkv~--~~~k~kTkv~kkt-lnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      .+...+|||.+.  ..+..||+++.+. .||.|||+|... +..  .. ..+.|+|.|.|.++. .+||.+.||...+..
T Consensus        43 ~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~-~ah--~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~  117 (808)
T PLN02270         43 GKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY-CAH--MA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILD  117 (808)
T ss_pred             CCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe-ecc--Cc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcC
Confidence            345679999998  5667899999884 699999999877 543  22 479999999999987 499999999999977


Q ss_pred             ccccceeEeCccCC
Q psy12096        151 AQTIEEWRELQSVE  164 (173)
Q Consensus       151 ~~~~~~W~~L~p~~  164 (173)
                      +...+.|++|....
T Consensus       118 g~~i~~~~~~~~~~  131 (808)
T PLN02270        118 GEEVDRWVEILDND  131 (808)
T ss_pred             CCccccEEeccCCC
Confidence            77889999996654

>KOG1011|consensus

Probab=98.36  E-value=9.3e-07  Score=81.31  Aligned_cols=86  Identities=12%  Similarity=0.050  Sum_probs=72.1

Q ss_pred             CCCccEEEe--------cCeEEeecccCCCCCCeeecEEEecccCccc-CCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096         77 IANESMKIA--------DKVAEETGMPPWVVVSIFIERQILEGVPYAD-AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ  147 (173)
Q Consensus        77 ~~dPyVkv~--------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~-l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~  147 (173)
                      .--|||.++        +++|+.|+...++..|.|||+|.|- +..+. .....|.|+|.||.-...+..+|.+.+.|.+
T Consensus      1144 mFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~-Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~ 1222 (1283)
T KOG1011|consen 1144 MFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFF-LGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRS 1222 (1283)
T ss_pred             ccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEE-eccCCCCceEEEEEeehhheeecccceeeeeeeehhh
Confidence            346999987        5678889999999999999999998 76543 3346899999999988888899999999999


Q ss_pred             cccccccceeEeCccC
Q psy12096        148 IDLAQTIEEWRELQSV  163 (173)
Q Consensus       148 l~~~~~~~~W~~L~p~  163 (173)
                      +...+....|++|..+
T Consensus      1223 va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1223 VADKGSCACWVPLGRR 1238 (1283)
T ss_pred             HhhcCceeEeeecccc
Confidence            9877777899999654

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.24  E-value=2.2e-06  Score=64.66  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             CCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCc-------------ccCCCCEEEEEEEEcCCC-------
Q psy12096         78 ANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPY-------------ADAMNKTLVFAIFDFDRF-------  132 (173)
Q Consensus        78 ~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~-------------~~l~~~~L~~~V~D~d~~-------  132 (173)
                      .|+||++.     ++.+++|+++.++..|.|+.+++|. ++.             +-+....+.|.||....-       
T Consensus        33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            58999987     6678999999999999999999999 661             123345689999975533       


Q ss_pred             ---CCCceeEEEEEeCCccc-cccccceeEeC
Q psy12096        133 ---SKHDQIGEVKVALCQID-LAQTIEEWREL  160 (173)
Q Consensus       133 ---~~~d~IG~v~l~L~~l~-~~~~~~~W~~L  160 (173)
                         ..|-.||.+.+|+.++- ...+...||++
T Consensus       112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683         112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence               23458999999999884 34467899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.01  E-value=2.3e-05  Score=57.19  Aligned_cols=64  Identities=16%  Similarity=0.101  Sum_probs=49.5

Q ss_pred             CCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         77 IANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        77 ~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      ..+|||.+.  ...+.||+.-   .||.|||+|.|+ |..    ...+++.|||... .+.-.||...+.++++.
T Consensus        22 ~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~-Vdk----~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          22 RPETYVSIKVEDVERARTKPS---RNDRWNEDFEIP-VEK----NNEEEVIVYDKGG-DQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             CCCcEEEEEECCEEEEeccCC---CCCcccceEEEE-ecC----CcEEEEEEEeCCC-CeecceeeehhhHHHHH
Confidence            359999988  4447888874   799999999999 832    4589999999643 33457999999888774

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2060|consensus

Probab=97.98  E-value=2e-06  Score=74.55  Aligned_cols=86  Identities=13%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEE-EcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~-D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      ...+||||++      ...|.||+..++|++|.|-..+.|. -   ....+.|.++|| ||.++-+..|+|.+++-|.++
T Consensus       289 ~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~---sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL  364 (405)
T KOG2060|consen  289 SLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-Q---SPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDEL  364 (405)
T ss_pred             cccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-c---CCCccEEEEEEeccccccchHHHhhHHHHHhhhh
Confidence            3568999999      3348999999999999999998998 3   345679999999 699998999999999999999


Q ss_pred             cccc-ccceeEeCccCCc
Q psy12096        149 DLAQ-TIEEWRELQSVEG  165 (173)
Q Consensus       149 ~~~~-~~~~W~~L~p~~~  165 (173)
                      .+.. ....||+|.+...
T Consensus       365 ~ls~~~~igwyKlfgsss  382 (405)
T KOG2060|consen  365 NLSSSPVIGWYKLFGSSS  382 (405)
T ss_pred             ccccccceeeeeccCCcc
Confidence            8765 5679999987643

>PLN02964 phosphatidylserine decarboxylase

Probab=97.65  E-value=3.3e-05  Score=71.82  Aligned_cols=87  Identities=10%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             CCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096         78 ANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE  155 (173)
Q Consensus        78 ~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~  155 (173)
                      .|||..+-  ..+.+||.+.++|+||+|||...|. |....+.  ..+|.|||+++++.|+++|.+.++|..+...+..+
T Consensus        68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~e  144 (644)
T PLN02964         68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLL-LEKNGPH--LARISVFETNRLSKNTLVGYCELDLFDFVTQEPES  144 (644)
T ss_pred             CCcEEEEEEecceeeeeccccccCCcccchhhceE-eccCCcc--eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHH
Confidence            48876654  6778999999999999999988888 7665543  56999999999999999999999988776443323


Q ss_pred             ee--EeCccCCccc
Q psy12096        156 EW--RELQSVEGEG  167 (173)
Q Consensus       156 ~W--~~L~p~~~~~  167 (173)
                      .|  |.+..+.+.+
T Consensus       145 lkeaF~lfD~dgdG  158 (644)
T PLN02964        145 ACESFDLLDPSSSN  158 (644)
T ss_pred             HHHHHHHHCCCCCC
Confidence            22  4444444443

>PLN02352 phospholipase D epsilon

Probab=97.53  E-value=0.0002  Score=67.51  Aligned_cols=75  Identities=13%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             CccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc-cc
Q psy12096         79 NESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-IE  155 (173)
Q Consensus        79 dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~-~~  155 (173)
                      +|||.+.  ..+..||   .+.-||.|||+|... +..  .....+.|+|.|     ...+||.+.+|...+..+.. .+
T Consensus        37 ~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~-~ah--~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~  105 (758)
T PLN02352         37 ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQIL-CAH--PLDSTITITLKT-----KCSILGRFHIQAHQIVTEASFIN  105 (758)
T ss_pred             CceEEEEeCCcEEecC---CCCCCCccccceeEE-eee--ecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccc
Confidence            9999998  5556778   555699999999877 543  222469999988     25799999999999866655 78


Q ss_pred             eeEeCccCC
Q psy12096        156 EWRELQSVE  164 (173)
Q Consensus       156 ~W~~L~p~~  164 (173)
                      .|++|....
T Consensus       106 ~~~~~~~~~  114 (758)
T PLN02352        106 GFFPLIMEN  114 (758)
T ss_pred             eEEEcccCC
Confidence            999986643

>KOG1326|consensus

Probab=97.46  E-value=3.5e-05  Score=73.60  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=57.2

Q ss_pred             ccCCCccEEEec-Ce--EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096         75 KEIANESMKIAD-KV--AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ  147 (173)
Q Consensus        75 ~~~~dPyVkv~~-~~--k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~  147 (173)
                      ++.+||||++.. ++  .-+...+.+|+||+|++.|.+. ....  ..+.|.+.|||+|.++.++.||+..+.|+.
T Consensus       631 ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~-~~lp--~ek~l~v~vyd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  631 NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELE-CLLP--FEKDLIVEVYDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhh-cccc--hhhcceeEEEEeecccccchhhceehhhhh
Confidence            356899999983 32  3677889999999999999877 4332  246899999999999999999999998765

>KOG1327|consensus

Probab=97.32  E-value=0.00045  Score=62.68  Aligned_cols=90  Identities=12%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             cCCCccEEEe----c---CeEEeecccCCCCCCeeecEEEecccCcccCC----CCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096         76 EIANESMKIA----D---KVAEETGMPPWVVVSIFIERQILEGVPYADAM----NKTLVFAIFDFDRFSKHDQIGEVKVA  144 (173)
Q Consensus        76 ~~~dPyVkv~----~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~----~~~L~~~V~D~d~~~~~d~IG~v~l~  144 (173)
                      ...|||..++    .   ..-.+|.++++++||.|-+   |. |+...++    ++.+.+.+||++..+++++||++.-+
T Consensus       155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt  230 (529)
T KOG1327|consen  155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTT  230 (529)
T ss_pred             ccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEeccc
Confidence            3468998887    1   1258999999999999995   34 4444444    36788999999999999999999999


Q ss_pred             CCccccccccceeEeCccCCccccc
Q psy12096        145 LCQIDLAQTIEEWRELQSVEGEGGQ  169 (173)
Q Consensus       145 L~~l~~~~~~~~W~~L~p~~~~~~~  169 (173)
                      +..+........|....+..+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~k  255 (529)
T KOG1327|consen  231 LSELQEPGSPNQIMLINPKKKAKKK  255 (529)
T ss_pred             HHHhcccCCcccccccChhhhhhhh
Confidence            8887543334578777777666553

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.53  E-value=0.0073  Score=46.91  Aligned_cols=57  Identities=23%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      .|..+.-+..+.|||.+.|+ |...++. +..|.|+||+++..++...+|.+.++|-+.
T Consensus        50 ~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          50 QTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             EccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45444445678899999999 9988886 468999999988766677999999998765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1265|consensus

Probab=96.14  E-value=0.0095  Score=57.04  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             eecCCCCchhhhhhhhccCCcccCCCCCCCcccceecchheecccccceeeEEe---eeccCCCccEEEe--------cC
Q psy12096         19 FNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVAS---IKKEIANESMKIA--------DK   87 (173)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~lv~~---ik~~~~dPyVkv~--------~~   87 (173)
                      .|...|=.+-.|-+.|.+..--+|+.-|-|      ..+++.     +.+.|++   +.......||.+.        .+
T Consensus       669 yNG~sGYllKPdfmRrpDr~fdPFse~~Vd------gvIA~t-----~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~R  737 (1189)
T KOG1265|consen  669 YNGGSGYLLKPDFMRRPDRQFDPFSESPVD------GVIAAT-----LSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIR  737 (1189)
T ss_pred             ecCCccceeChHHhhCCCcCcCCcccCccc------ceEEee-----EEEEEEeeeeccccccCceEEEEecCCCchhhh
Confidence            455666666667777776655555332211      111111     1111221   2233456898876        34


Q ss_pred             eEEeecccC-CCCCCeee-cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         88 VAEETGMPP-WVVVSIFI-ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        88 ~k~kTkv~k-ktlnP~wn-Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      +.++|++.. +++||+|+ |.|.|..|-.++++  .|+|.||+..    +.+||+-.+|+..+..+
T Consensus       738 k~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  738 KEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILPVDGLNAG  797 (1189)
T ss_pred             hhhhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----CceeeeeccchhcccCc
Confidence            568888776 67999999 57899987778886  6999999865    36999999999877644

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.98  E-value=0.032  Score=42.05  Aligned_cols=58  Identities=21%  Similarity=0.321  Sum_probs=44.3

Q ss_pred             eecccCCC-CCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCCCC----ceeEEEEEeCCccc
Q psy12096         91 ETGMPPWV-VVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFSKH----DQIGEVKVALCQID  149 (173)
Q Consensus        91 kTkv~kkt-lnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~~~----d~IG~v~l~L~~l~  149 (173)
                      .|+...-+ .++.|||.+.|+ |...++. +..|.|+||..+.....    ..||.+.++|-+..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred             eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence            45555444 799999999999 9888876 46799999998876655    69999999987763

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.95  E-value=0.062  Score=41.01  Aligned_cols=58  Identities=19%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC--CCceeEEEEEeCCccc
Q psy12096         91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS--KHDQIGEVKVALCQID  149 (173)
Q Consensus        91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~--~~d~IG~v~l~L~~l~  149 (173)
                      .|.......++.|||.+.|+ +...++. +..|.|+||+.+..+  ....||.+.++|-+..
T Consensus        48 ~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          48 STKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             eccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEccc
Confidence            34333334679999999999 8887775 468999999987654  4579999999987753

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1326|consensus

Probab=95.83  E-value=0.0079  Score=58.03  Aligned_cols=85  Identities=16%  Similarity=0.232  Sum_probs=61.4

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc-ccC-----CCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY-ADA-----MNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~-~~l-----~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      ...|||..+. ....+.|-++..|+||.||.+..|..+.. .+.     .--.+.|.+||.|+.+.++++|+......-.
T Consensus       225 ~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~  304 (1105)
T KOG1326|consen  225 DESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVM  304 (1105)
T ss_pred             cCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEE
Confidence            4568998887 66678899999999999999999983321 000     0125789999999999999999976643222


Q ss_pred             ccccccceeEeCc
Q psy12096        149 DLAQTIEEWRELQ  161 (173)
Q Consensus       149 ~~~~~~~~W~~L~  161 (173)
                       .....-.|+++.
T Consensus       305 -~~~p~lkw~p~~  316 (1105)
T KOG1326|consen  305 -VQCPALKWVPTM  316 (1105)
T ss_pred             -ecCCccceEEee
Confidence             123446788764

>KOG3837|consensus

Probab=95.46  E-value=0.013  Score=52.06  Aligned_cols=84  Identities=15%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             CCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc---------CCCCEEEEEEEEcCCCC-CCceeEEE
Q psy12096         78 ANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD---------AMNKTLVFAIFDFDRFS-KHDQIGEV  141 (173)
Q Consensus        78 ~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~---------l~~~~L~~~V~D~d~~~-~~d~IG~v  141 (173)
                      .|-||++.      ...+.||.+++.|-+|.|+|.|-.. |....         .....+.|.+|....|- +|.++|.+
T Consensus       388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~  466 (523)
T KOG3837|consen  388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTG  466 (523)
T ss_pred             HHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceecee
Confidence            35677776      3458899999999999999999988 65411         11346899999877664 56699999


Q ss_pred             EEeCCccccccccceeEeCcc
Q psy12096        142 KVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       142 ~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      .+.|.-+...-+....++|..
T Consensus       467 nikle~Len~cei~e~~~l~D  487 (523)
T KOG3837|consen  467 NIKLEILENMCEICEYLPLKD  487 (523)
T ss_pred             eeeehhhhcccchhhceeccc
Confidence            999987765545567777744

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.28  E-value=0.073  Score=41.84  Aligned_cols=58  Identities=10%  Similarity=0.087  Sum_probs=38.9

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCC---ceeEEEEEeCCc
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKH---DQIGEVKVALCQ  147 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~---d~IG~v~l~L~~  147 (173)
                      ...|.+...+.+|.|+|+|..+ +|.....+..|.|++++...-...   ..+|-+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            5788888888999999999999 998777788999999986543322   699999999977

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.26  E-value=0.15  Score=39.53  Aligned_cols=50  Identities=12%  Similarity=0.067  Sum_probs=39.4

Q ss_pred             CCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC----CCceeEEEEEeCCccc
Q psy12096         99 VVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS----KHDQIGEVKVALCQID  149 (173)
Q Consensus        99 lnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~----~~d~IG~v~l~L~~l~  149 (173)
                      .++.|||.+.|+ |...++. ...|.|+||+...-.    ....+|.+.++|-+..
T Consensus        53 ~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          53 SNPRWNEWLDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             CCCccceeEEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCC
Confidence            579999999999 9888876 468999999976422    2247999999987753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.21  E-value=0.16  Score=39.91  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             EeecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC----------------CCceeEEEEEeCCccc
Q psy12096         90 EETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS----------------KHDQIGEVKVALCQID  149 (173)
Q Consensus        90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~----------------~~d~IG~v~l~L~~l~  149 (173)
                      ..|+...-+-++.|||.+.|+ |...++. ...|.|+||+.....                ....||.+.++|-+..
T Consensus        46 ~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~  121 (173)
T cd08693          46 VKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK  121 (173)
T ss_pred             eEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence            355555445679999999999 9888886 457999999975422                2369999999987753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=95.11  E-value=0.19  Score=40.44  Aligned_cols=57  Identities=14%  Similarity=0.046  Sum_probs=46.0

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCC----CCceeEEEEEeCC
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS----KHDQIGEVKVALC  146 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~----~~d~IG~v~l~L~  146 (173)
                      ..+|-|...+-+|.|+|++... ||.+...+..|.|+++......    ....+|-+.+||-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            6788888888899999999999 9999999999999997643221    1247898889884

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.18  E-value=0.13  Score=41.25  Aligned_cols=58  Identities=14%  Similarity=0.014  Sum_probs=46.4

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCC-C-CceeEEEEEeCCc
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS-K-HDQIGEVKVALCQ  147 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~-~-~d~IG~v~l~L~~  147 (173)
                      ..+|-|...+-+|.|||++... ||.+...+..|.|+++....-. . ...+|-+.+||-.
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            5788899888999999999999 9999998889999887633221 1 2579999999843

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.07  E-value=0.32  Score=37.78  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             cCeEEeecccCCCCCCeeecEEEecccCcccCC-----------CCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         86 DKVAEETGMPPWVVVSIFIERQILEGVPYADAM-----------NKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        86 ~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~-----------~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      .+++++|+.+..+++|.|+|.|-|+ ++.+...           ...+.+.|.-.|..+...++|.-.+....+-
T Consensus        43 ~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL  116 (156)
T PF15627_consen   43 RGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVL  116 (156)
T ss_pred             cCceEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHh
Confidence            7789999999999999999999999 8765422           1357788887888777788888888766553

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.00  E-value=0.39  Score=38.05  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=42.2

Q ss_pred             eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC----------------CCceeEEEEEeCCcc
Q psy12096         91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS----------------KHDQIGEVKVALCQI  148 (173)
Q Consensus        91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~----------------~~d~IG~v~l~L~~l  148 (173)
                      +|....-+-++.|||.+.|+ |...++. ...|.|+||++...+                .+..||-+.+.|-+.
T Consensus        49 ~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          49 RTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             eeeccCCCCCccccccEECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence            45555555679999999999 9988886 457999999973221                245788888887665

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.67  E-value=0.21  Score=38.97  Aligned_cols=48  Identities=15%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC---------CCceeEEEEEeCCcc
Q psy12096        100 VSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS---------KHDQIGEVKVALCQI  148 (173)
Q Consensus       100 nP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~---------~~d~IG~v~l~L~~l  148 (173)
                      .+.|||.+.|+ +...++. +..|.|++|+....+         ....||.+.++|-+.
T Consensus        62 ~~~Wnewl~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          62 RVVWDEWIEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             cccccceEECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            57799999999 8877775 468999999977554         346999999998776

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=92.54  E-value=0.45  Score=37.27  Aligned_cols=57  Identities=11%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----CCCceeEEEEEeCCc
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----SKHDQIGEVKVALCQ  147 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----~~~d~IG~v~l~L~~  147 (173)
                      ...|-+..+ -+|.|+|++... +|.....+..|.|++++...-     .....+|-+.+||-.
T Consensus        54 ~~~sv~~~~-k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYH-KNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcC-CCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            344545555 899999999999 987666778999999986532     235689999999975

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=91.02  E-value=1.2  Score=38.75  Aligned_cols=79  Identities=19%  Similarity=0.204  Sum_probs=60.9

Q ss_pred             cCeEEeecccCCCCCCeeecEEEecccCcccC-----CCCEEEEEEEEcC-CCCCCceeEEEEEeCCcc---ccc--ccc
Q psy12096         86 DKVAEETGMPPWVVVSIFIERQILEGVPYADA-----MNKTLVFAIFDFD-RFSKHDQIGEVKVALCQI---DLA--QTI  154 (173)
Q Consensus        86 ~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-----~~~~L~~~V~D~d-~~~~~d~IG~v~l~L~~l---~~~--~~~  154 (173)
                      .....-|-.+..+-.|.||-.+.+. +....+     .+.-+++.+|-.| .-+..+.||.+.++|.+.   ..+  ...
T Consensus        27 ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~  105 (340)
T PF12416_consen   27 NGESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQK  105 (340)
T ss_pred             CCceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccC
Confidence            6678889888899999999988888 543333     3456889999888 567788999999999988   433  344


Q ss_pred             ceeEeCccCCc
Q psy12096        155 EEWRELQSVEG  165 (173)
Q Consensus       155 ~~W~~L~p~~~  165 (173)
                      ..||.|...+.
T Consensus       106 ~~W~~LL~~~~  116 (340)
T PF12416_consen  106 PKWYKLLSSSS  116 (340)
T ss_pred             CCeeEcccccc
Confidence            68999977643

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.75  E-value=0.99  Score=35.81  Aligned_cols=58  Identities=17%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCC------CceeEEEEEeCCc
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSK------HDQIGEVKVALCQ  147 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~------~d~IG~v~l~L~~  147 (173)
                      ...|.|...+-+|.|+|++... +|..-..+..|.|+.++.+.-.+      ...+|-+.+||-.
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            5778888888999999999999 99877777899999998443221      2469999999743

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.48  E-value=2.4  Score=33.78  Aligned_cols=58  Identities=12%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC--C-------CCceeEEEEEeCCc
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF--S-------KHDQIGEVKVALCQ  147 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~--~-------~~d~IG~v~l~L~~  147 (173)
                      ...|.|...+-+|.|+|++... +|..-..+..|.|+.++....  .       ....+|-+.+||-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            5778888888999999999999 998777788999999986521  1       12469999999854

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1327|consensus

Probab=87.08  E-value=0.67  Score=42.52  Aligned_cols=60  Identities=23%  Similarity=0.356  Sum_probs=48.3

Q ss_pred             EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC----CCCceeEEEEEeCCccccc
Q psy12096         89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~----~~~d~IG~v~l~L~~l~~~  151 (173)
                      ..+|.++++.+||.|-+.|... ...+..+  .|+|.++|.+..    ...+|+|++...+..+-..
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~-y~fE~vQ--~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQ-YRFEKVQ--LLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             ccceeeeeccCCccceeeechh-heeeeee--eEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            3589999999999999999877 6666654  799999997754    4578999999988876533

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=86.95  E-value=1.2  Score=31.57  Aligned_cols=39  Identities=15%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcC
Q psy12096         91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFD  130 (173)
Q Consensus        91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d  130 (173)
                      .|..+.-...+.|||.+.|+ |...++. ...|.|++|+..
T Consensus        52 ~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       52 STSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVK   91 (100)
T ss_pred             EecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEee
Confidence            44444444568999999999 9888876 457999999864

Outlier of C2 family.

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=82.99  E-value=3.5  Score=30.43  Aligned_cols=54  Identities=19%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             CCCCCeeecEEEecccCcc------cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         97 WVVVSIFIERQILEGVPYA------DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        97 ktlnP~wnEtf~F~gV~~~------~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      .+-.-.|||+|.+. +..-      .+....+.|.|+....-++...+|.+.|.|.++...
T Consensus        48 ~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   48 KNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             cccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence            44567899999888 5431      245567999999875434436999999999988643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		4e-14
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		1e-13
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		1e-13
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-13
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-13
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-09
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		3e-09
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		9e-05
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-04

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E E
Sbjct: 77  VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 131

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E
Sbjct: 75  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 127

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E
Sbjct: 100 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 77  IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
           + ++  K+  KV  +   P W    +F      EG PY   + + L   + D+DRFS++D
Sbjct: 56  LPDKKHKLETKVKRKNLNPHWNETFLF------EGFPYEKVVQRILYLQVLDYDRFSRND 109
Query: 137 QIGEVKVALCQIDLAQTIEEWRELQ 161
            IGEV + L ++DL Q    W++L+
Sbjct: 110 PIGEVSIPLNKVDLTQMQTFWKDLK 134

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 78  ANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS 133
           +N  +KI      K +++TG+       +F ER   E +P+ +A  +TL+  + DFD+FS
Sbjct: 54  SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFS 112
Query: 134 KHDQIGEVKVALCQIDLAQTIEEWREL 160
           +H  IG+V V LC++DL +    W+ L
Sbjct: 113 RHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 103 FIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 152
           F E     G+PY       L F I  FDRFS+ D IGEV + L  I+L++
Sbjct: 73  FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE---WRELQSVEGEGG 168
           VP A+   + L F+++DFDRFS+HD IG+V V    ++LA+   +   WR++     E  
Sbjct: 78  VPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAEQPPDRPLWRDILEGGSEKA 136
Query: 169 QIG 171
            +G
Sbjct: 137 DLG 139

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE---WRELQSVEGEGG 168
           VP A+   + L F+++DFDRFS+HD IG+V V    ++LA+   +   WR++     E  
Sbjct: 79  VPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAEQPPDRPLWRDILEGGSEKA 137
Query: 169 QIG 171
            +G
Sbjct: 138 DLG 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	5e-18
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	6e-17
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	8e-17
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	8e-17
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	9e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	3e-16
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-16
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-16
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-15
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-15
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-14
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-12
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-11
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-11
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-11
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-11
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	5e-11
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-10
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-10
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-09
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-09
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-07
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-06
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-06
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-06
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-06
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-06
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-05
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-04
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	7e-04

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 75.1 bits (185), Expect = 5e-18
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168
           +   +    TL   +   DRFS+H   GE+++ L    +     +W EL++     G
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 72.5 bits (178), Expect = 6e-17
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E
Sbjct: 100 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 71.5 bits (176), Expect = 8e-17
 Identities = 7/53 (13%), Positives = 22/53 (41%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
            G        + L  ++   +   ++  +G + + L   +L++   +W +L +
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 72.0 bits (177), Expect = 8e-17
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168
           EG PY   + + L   + D+DRFS++D IGEV + L ++DL Q    W++L+      G
Sbjct: 83  EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 71.6 bits (176), Expect = 9e-17
 Identities = 30/51 (58%), Positives = 37/51 (72%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 70.5 bits (173), Expect = 3e-16
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
           +P+ +A  +TL+  + DFD+FS+H  IG+V V LC++DL +    W+ L 
Sbjct: 91  IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 70.5 bits (173), Expect = 4e-16
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ---SVEGEG 167
           +P +    +TL F+++   RF ++  +GE ++ +    L + ++    L    S E EG
Sbjct: 84  IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 69.7 bits (171), Expect = 5e-16
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
           + +     M KTL   ++D+DRFS +D +GEV + L           W  L+   
Sbjct: 86  KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163
            G+   D   KTL  ++ D D+F  ++ IGE + +L ++   Q       L+ V
Sbjct: 88  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWREL 160
            F E     G+PY       L F I  FDRFS+ D IGEV + L  I+L++  +   RE+
Sbjct: 72  AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131

Query: 161 QS 162
            S
Sbjct: 132 IS 133

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRELQSVEG 165
           V   +   +TL  A+ +   F   D+  +G+V VAL   +LA+   +W +L    G
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E E
Sbjct: 77  VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 131

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 111 GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWRELQS 162
            + Y     KTL   +   DR    + +G  +++L ++  +      W  L S
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRELQS 162
             V   +   + L   ++D  R  +   + +GE+ + L    L      W +LQ+
Sbjct: 80  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
           +  +D  ++ L   I+D+D  S++D +G +   + ++  A   + W +L S E
Sbjct: 91  LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQE 141

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRELQ 161
             V   +   + L   ++D  R  +   + +GE+ + L    L      W +LQ
Sbjct: 77  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV--ALCQIDLAQTIEEWRELQSVEGEGGQ 169
           VP A+   + L F+++DFDRFS+HD IG+V +   L   +       WR++     E   
Sbjct: 78  VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKAD 137

Query: 170 IGK 172
           +G+
Sbjct: 138 LGE 140

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 118 MNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
             K L   ++ D+ R      +G  ++ L ++DL+  +  W +L    
Sbjct: 94  QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS 141

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 108 ILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 167
             +        + +L   + DF+   ++  IG   VAL  +   Q+     +L S+  E 
Sbjct: 58  EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEK 117

Query: 168 GQ 169
           GQ
Sbjct: 118 GQ 119

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI-DLAQTIEEWRELQSVEGEG 167
           V   D   K L+  +++    S+    IG +   +  +    + I  W  L   E  G
Sbjct: 86  VQEED-DQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG-EHLG 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
               L+F +FD +R ++ D +G+V V L  +       E    
Sbjct: 84  QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQI 170
              L   IFD D  ++ D +GE  + L  + +  +I      +   E   G+I
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
                 L   + D + +   + +G     +  + + +  E       V 
Sbjct: 66  PNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 113

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
           + ++D   K+L  +++D+D    +D IG  ++ +         + W E    + +
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL--KHWYECLKNKDK 149

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG---GQI 170
           ++  L   +FD D     D +G+V + L  I   Q       L++ + E    G I
Sbjct: 71  IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVI 124

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
              ++F +FD +R ++ D +G+V V L  +       E    
Sbjct: 73  RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYT 114

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
           +P       T++  + D D+ S++D IG++ ++          + W+++
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV--KHWKDM 122

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           +P       ++ F + D +R S+++ IG + +             W+E+  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG--GHWKEICD 138

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 41/175 (23%)

Query: 2   PPFDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTTTPL-----PEDEEEDLEMT 56
                 EV   +L  +      LP           +   TT P       E   + L   
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPR----------EV-LTTNPRRLSIIAESIRDGLATW 344

Query: 57  EAFEDV-SEELSSTV-ASIKKEIANESMKIADKVA---EETGMPP------WVVVSIFIE 105
           + ++ V  ++L++ + +S+      E  K+ D+++       +P       W  V     
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 106 RQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
             ++  +        +LV         S              ++L   +E    L
Sbjct: 405 MVVVNKL-----HKYSLVEKQPKESTISIPS---------IYLELKVKLENEYAL 445

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
           VP+       +V  + D+D+  K+D IG+V V             W ++
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 121 TLVFAIFDFDRFSKHDQIGEVKVALCQI----DLAQTIEEWRELQ 161
            L  A+F          +    +   ++      + T E W +L+
Sbjct: 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 120 KTLVFAIFDFDRFSKHDQIGEVKVALCQI--DLAQTIEEWRELQSVEGE 166
           + +  A+F        D +    +   ++  + ++  E+W +L+  EG+
Sbjct: 77  RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-PEGK 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.91
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.88
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.87
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.86
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.86
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.86
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.85
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.85
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.84
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.83
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.83
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.83
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.82
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.82
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.82
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.82
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.81
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.81
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.81
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.8
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.8
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.8
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.79
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.77
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.77
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.75
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.75
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.74
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.72
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.72
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.71
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.71
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.71
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.7
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.7
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.68
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.68
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.6
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.54
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.5
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.46
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.43
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.41
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.37
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.37
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.32
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.03
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.02
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.0
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.72
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.63
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.57
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.79
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	86.08
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	82.89

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.91  E-value=1.3e-23  Score=156.72  Aligned_cols=121  Identities=17%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             CCCcccceecchheecccccceeeEEeeec----cCCCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         46 PEDEEEDLEMTEAFEDVSEELSSTVASIKK----EIANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        46 ~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~----~~~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      .....|+|++++.|.....+|.+.|+..+.    +..||||+++     .+.++||+++++|+||+|||+|.|. ++..+
T Consensus         8 s~~~~G~l~~sl~y~~~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~-v~~~~   86 (138)
T 1wfm_A            8 SWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LAEEE   86 (138)
T ss_dssp             CCSSCCEEEEEEEEETTTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CCTTS
T ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEE-ecHHH
Confidence            345569999999999988888877776653    3479999998     1236899999999999999999999 99888


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCccc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  167 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~  167 (173)
                      +....|.|.|||+|+++++++||++.++|.++.......+|++|++..+++
T Consensus        87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~~~  137 (138)
T 1wfm_A           87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSS  137 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSCCC
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCCcCC
Confidence            877899999999999999999999999999998777778999999976654

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.88  E-value=5.1e-22  Score=148.02  Aligned_cols=115  Identities=33%  Similarity=0.538  Sum_probs=100.4

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +..|+|.+++.|......|.+.|+..+.       +..||||+++    .+.++||+++++++||.|||+|.|. ++..+
T Consensus        18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~   96 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSE   96 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEEC-CCHHH
T ss_pred             cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEe-ecHhh
Confidence            4458999999999988888877766532       3579999998    3458999999999999999999999 98877


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      +....|.|.|||+|.++++++||++.++|..+......++|++|+|+
T Consensus        97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  143 (143)
T 3f04_A           97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBCC
T ss_pred             cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcCC
Confidence            77789999999999999999999999999999877778899999874

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=9.8e-23  Score=155.76  Aligned_cols=113  Identities=13%  Similarity=0.224  Sum_probs=96.8

Q ss_pred             cccceecchheecccccceeeEEeeec-------cCCCccEEEe--c-----CeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA--D-----KVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~--~-----~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      +.|+|++++.|......|.+.|+..+.       +..||||+++  .     ..++||+++++|+||+|||+|.|. |+.
T Consensus        28 ~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~-v~~  106 (155)
T 2z0u_A           28 GATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS-MSY  106 (155)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEE-CCH
T ss_pred             CcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEE-cCH
Confidence            458999999999888888877766542       4579999998  2     138999999999999999999999 988


Q ss_pred             ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc-cccccceeEeCcc
Q psy12096        115 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-LAQTIEEWRELQS  162 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~-~~~~~~~W~~L~p  162 (173)
                      .++....|.|+|||+|+++++++||++.++|.++. ......+||+|+|
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            77766799999999999999999999999999985 3556789999975

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.86  E-value=5.1e-22  Score=149.19  Aligned_cols=121  Identities=16%  Similarity=0.246  Sum_probs=100.2

Q ss_pred             CcccceecchheecccccceeeEEeeec--------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccC
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVP  113 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~  113 (173)
                      +..|+|.+++.|......|.+.|+..+.        +..||||+++      ...++||+++++|+||+|||+|.|. |+
T Consensus         7 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~   85 (148)
T 3fdw_A            7 FVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE-IP   85 (148)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEE-CC
T ss_pred             ccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEE-eC
Confidence            3458999999999988888877776531        3469999998      1348999999999999999999999 98


Q ss_pred             cccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCccccc
Q psy12096        114 YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ  169 (173)
Q Consensus       114 ~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~~~  169 (173)
                      ..++....|.|.|||+|.++++++||++.++|..+...+....|++|+++......
T Consensus        86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~~~~  141 (148)
T 3fdw_A           86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE  141 (148)
T ss_dssp             STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC------
T ss_pred             hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCccccccc
Confidence            88777779999999999999999999999999999877777899999998665543

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=2.1e-21  Score=146.61  Aligned_cols=115  Identities=33%  Similarity=0.538  Sum_probs=99.2

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      ...|+|.+++.|......|.+.|+..+.       +..||||+++    .+.++||+++++++||+|||+|.|. ++..+
T Consensus        26 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~  104 (152)
T 1rsy_A           26 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSE  104 (152)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CCHHH
T ss_pred             CCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEe-ecHHH
Confidence            3458999999999888888877766532       3469999998    3457899999999999999999999 98777


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      +....|.|.|||+|.++++++||++.++|..+..+...++|++|++.
T Consensus       105 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          105 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            76779999999999999999999999999999877777899999875

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=146.35  Aligned_cols=121  Identities=27%  Similarity=0.492  Sum_probs=102.1

Q ss_pred             CCCcccceecchheecccccceeeEEeee---c-----------cCCCccEEEe----cCeEEeecccCCCCCCeeecEE
Q psy12096         46 PEDEEEDLEMTEAFEDVSEELSSTVASIK---K-----------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQ  107 (173)
Q Consensus        46 ~~~~~~~l~~~~~~~~~~~~l~~lv~~ik---~-----------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf  107 (173)
                      ..+..|+|.+++.|......|.+.|+..+   .           +..||||+++    .+.++||+++++++||+|||+|
T Consensus         8 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f   87 (147)
T 2enp_A            8 SKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY   87 (147)
T ss_dssp             SCCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCC
T ss_pred             CCCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeE
Confidence            34556899999999998888887776653   2           1479999998    2468899999999999999999


Q ss_pred             EecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCccc
Q psy12096        108 ILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  167 (173)
Q Consensus       108 ~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~  167 (173)
                      .|. ++..++....|.|.|||+|.++++++||++.++|..+........|+.|+++...+
T Consensus        88 ~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  146 (147)
T 2enp_A           88 TFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSS  146 (147)
T ss_dssp             EEC-CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCCCC
T ss_pred             EEE-eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCCCCC
Confidence            999 98766666799999999999999999999999999997766678999999876543

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=8.1e-21  Score=141.33  Aligned_cols=119  Identities=23%  Similarity=0.410  Sum_probs=99.2

Q ss_pred             CCcccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEeccc-Cc
Q psy12096         47 EDEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGV-PY  114 (173)
Q Consensus        47 ~~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV-~~  114 (173)
                      .+..|+|.+++.|......|.+.|+..+.       +..||||+++    ...++||+++++++||.|||+|.|. + +.
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~   87 (141)
T 2d8k_A            9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE-GFPY   87 (141)
T ss_dssp             CCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEEC-SCCH
T ss_pred             CceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEEC-ccCH
Confidence            33458999999999888888777765532       3469999998    3468999999999999999999998 5 44


Q ss_pred             ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCcc
Q psy12096        115 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  166 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~  166 (173)
                      +++....|.|.|||+|.++++++||++.++|..+........|++|.+...-
T Consensus        88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  139 (141)
T 2d8k_A           88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPS  139 (141)
T ss_dssp             HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCCC
T ss_pred             HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCCC
Confidence            4555679999999999999999999999999999877677899999987543

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=4.6e-21  Score=142.64  Aligned_cols=119  Identities=17%  Similarity=0.244  Sum_probs=98.8

Q ss_pred             CCCcccceecchheecccccceeeEEeeec-------cCCCccEEEe----c--CeEEeecccCCCCCCeeecEEEeccc
Q psy12096         46 PEDEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----D--KVAEETGMPPWVVVSIFIERQILEGV  112 (173)
Q Consensus        46 ~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~--~~k~kTkv~kktlnP~wnEtf~F~gV  112 (173)
                      +....|+|++++.|......|.+.|+..+.       + .||||+++    .  ..++||+++++|+||+|||+|.|. +
T Consensus         6 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   83 (142)
T 2dmg_A            6 SGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS-V   83 (142)
T ss_dssp             CSCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEEC-C
T ss_pred             CCCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEE-e
Confidence            344568999999999888888877766532       3 79999998    1  257999999999999999999999 9


Q ss_pred             CcccCCCCEEEEEEEEcCCCCC--CceeEEEEEeCCccccccccceeEeCccCCcc
Q psy12096        113 PYADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  166 (173)
Q Consensus       113 ~~~~l~~~~L~~~V~D~d~~~~--~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~  166 (173)
                      +..++....|.|.|||+|.+++  +++||++.++|..+.......+|++|.+..+.
T Consensus        84 ~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~~  139 (142)
T 2dmg_A           84 SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGP  139 (142)
T ss_dssp             CHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCSC
T ss_pred             cHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCCC
Confidence            8776666799999999999864  57999999999998777777899999887543

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.84  E-value=4e-20  Score=137.12  Aligned_cols=117  Identities=24%  Similarity=0.314  Sum_probs=97.5

Q ss_pred             cccceecchheecccccceeeEEeeec--------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      ..|+|.+++.|......|.+.++..+.        +..||||+++    .+.++||+++++++||+|||+|.|..++.++
T Consensus         7 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~   86 (138)
T 1ugk_A            7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ   86 (138)
T ss_dssp             CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred             ccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHH
Confidence            348999999999888888877766531        3469999998    2468999999999999999999994377777


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc-ceeEeCccCCc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWRELQSVEG  165 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~-~~W~~L~p~~~  165 (173)
                      +....|.|.|||+|.++++++||++.++|.++....+. ..|++|++...
T Consensus        87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS  136 (138)
T ss_dssp             GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSS
T ss_pred             hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCC
Confidence            76679999999999999999999999999999765444 56899988654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.83  E-value=1.6e-20  Score=142.06  Aligned_cols=115  Identities=15%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             cccceecchheecccccceeeEEeeec------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      ..|++++++.|......|.+.|+..+.      +..||||+++      ...++||+++++++||.|||+|.|. ++..+
T Consensus        12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~   90 (153)
T 3fbk_A           12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP-VQEED   90 (153)
T ss_dssp             -CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEE-CCGGG
T ss_pred             CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEe-cccHH
Confidence            458999999999999998887776542      3469999997      2357999999999999999999999 97777


Q ss_pred             CCCCEEEEEEEEcCCCCC-CceeEEEEEeCCcccc-ccccceeEeCccCCc
Q psy12096        117 AMNKTLVFAIFDFDRFSK-HDQIGEVKVALCQIDL-AQTIEEWRELQSVEG  165 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~-~d~IG~v~l~L~~l~~-~~~~~~W~~L~p~~~  165 (173)
                      +.. .|.|.|||+|.+++ +++||++.++|.++.. ......||.|++...
T Consensus        91 ~~~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           91 DQK-RLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             TTS-EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred             hCC-EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence            764 69999999999987 9999999999999863 566789999988644

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.83  E-value=4.1e-20  Score=136.12  Aligned_cols=98  Identities=14%  Similarity=0.263  Sum_probs=84.9

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +|+|.+++.|......|.+.++..+.       +..||||+++   .   ..+++|+++++++||.|||+|.|. ++..+
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~~   80 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD-IPTEK   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEE-CCGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEE-CChhh
Confidence            48999999999888888877766542       3469999998   1   247899999999999999999999 98887


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      +....|.|.|||+|.++++++||++.++|.++
T Consensus        81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             GGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred             cCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence            77778999999999999999999999999865

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.83  E-value=4.9e-20  Score=151.09  Aligned_cols=154  Identities=18%  Similarity=0.312  Sum_probs=112.7

Q ss_pred             CCChhhhheeeeeee-eeecCCCCchhhhhhhhccCCcccCCCCCCCcccceecchheecccccceeeEEeeec------
Q psy12096          3 PFDKREVVQEVLNVI-SFNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKK------   75 (173)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~------   75 (173)
                      +|++|++||++.+|| .+........-.+......        -.....|++.+.+.|......+.+.+...+.      
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--------~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~  167 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--------EEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV  167 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--------CCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCST
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeecccc--------ccccccccEEEEEEecCcCCceEEEEEEeECCCCcCC
Confidence            478899999999999 4654321111001111000        0122347889999998877777766665432      


Q ss_pred             -cCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 -EIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 -~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                       +..||||+++   ..   .++||+++++++||.|||+|.|. ++.+++....|.|.|||+|.++++++||++.++++.+
T Consensus       168 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEe-CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence             3469999998   12   47899999999999999999999 9888877778999999999999999999999999763


Q ss_pred             c------------cccccceeEeCccCCc
Q psy12096        149 D------------LAQTIEEWRELQSVEG  165 (173)
Q Consensus       149 ~------------~~~~~~~W~~L~p~~~  165 (173)
                      .            +......||.|++...
T Consensus       247 ~~~~~~w~~~~~~~~~~~~~W~~L~~~~~  275 (284)
T 2r83_A          247 GAELRHWSDMLANPRRPIAQWHTLQVEEE  275 (284)
T ss_dssp             HHHHHHHHHHHHSTTSCEEEEEECBCHHH
T ss_pred             CcHHHHHHHHHHCCCCchheeeecCCccc
Confidence            2            2334568999988643

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.82  E-value=3.8e-20  Score=140.43  Aligned_cols=117  Identities=21%  Similarity=0.356  Sum_probs=96.5

Q ss_pred             cccceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      ..|+|.+++.|......|.+.|+..+.       +..||||+++   .   ..++||+++++++||.|||+|.|. |+..
T Consensus        10 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~   88 (159)
T 1tjx_A           10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFE   88 (159)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCGG
T ss_pred             cCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEE-cCHH
Confidence            458999999999888888877766542       3469999998   1   247899999999999999999999 9887


Q ss_pred             cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc------------ccccccceeEeCccCCcc
Q psy12096        116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI------------DLAQTIEEWRELQSVEGE  166 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l------------~~~~~~~~W~~L~p~~~~  166 (173)
                      ++....|.|.|||+|.++++++||++.++|..+            ........||.|.+....
T Consensus        89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~~~  151 (159)
T 1tjx_A           89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEV  151 (159)
T ss_dssp             GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHHHH
T ss_pred             HhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcccc
Confidence            777678999999999999999999999999853            223455789999886543

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=6.6e-20  Score=133.95  Aligned_cols=110  Identities=21%  Similarity=0.252  Sum_probs=87.6

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEeccc-Ccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGV-PYA  115 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV-~~~  115 (173)
                      .|+|.+++.|......|.+.+...+.       +..||||+++      ...++||+++++++||.|||+|.|. + +.+
T Consensus         4 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~   82 (129)
T 2bwq_A            4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS-PVHRR   82 (129)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEEC-SCCGG
T ss_pred             eEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEc-cCCHH
Confidence            38899999999888888877766532       3469999998      2468999999999999999999999 5 445


Q ss_pred             cCCCCEEEEEEEEcCCCCC--CceeEEEEEeCCccccccccceeEeCc
Q psy12096        116 DAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQ  161 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~--~d~IG~v~l~L~~l~~~~~~~~W~~L~  161 (173)
                      ++....|.|.|||+|.+++  +++||++.++|.++... +..+||+|+
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~-~~~~W~~Lq  129 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLD-DEPHWYKLQ  129 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCS-SCEEEEECC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCC-cCCccEECc
Confidence            5556799999999999987  99999999999998654 478999985

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.82  E-value=7.7e-20  Score=135.69  Aligned_cols=108  Identities=15%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             hheecccccceeeEEeeec------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEE
Q psy12096         57 EAFEDVSEELSSTVASIKK------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVF  124 (173)
Q Consensus        57 ~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~  124 (173)
                      +.|......|.+.|+..+.      +..||||+++      ...++||+++++|+||+|||+|.|..++..++....|.|
T Consensus        13 ~~~~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~   92 (134)
T 2b3r_A           13 LSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQL   92 (134)
T ss_dssp             EEEEEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEE
T ss_pred             EEEeecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEE
Confidence            3344445556655554432      3569999998      235799999999999999999999856666666779999


Q ss_pred             EEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCC
Q psy12096        125 AIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  164 (173)
Q Consensus       125 ~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~  164 (173)
                      .|||+|.++++++||++.++|..+..++....||+|++..
T Consensus        93 ~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           93 SVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             EEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             EEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence            9999999999999999999999998777778999998754

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=5.6e-20  Score=136.05  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=96.3

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      +..|+|.+++.|......|.+.|+..+.       +..||||+++      ...++||+++++++||+|||+|.|..++.
T Consensus         5 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~   84 (141)
T 1v27_A            5 SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   84 (141)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence            3458999999999888888877766542       3469999998      24589999999999999999999983344


Q ss_pred             ccCCCCEEEEEEEEcCCCCC--CceeEEEEEeCCccccccccceeEeCccCCc
Q psy12096        115 ADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQSVEG  165 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~--~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~  165 (173)
                      +++....|.|.|||+|.+++  +++||++.++|..+... ....||+|++...
T Consensus        85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~-~~~~W~~L~~~~~  136 (141)
T 1v27_A           85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLD-DEPHWYKLQTHDS  136 (141)
T ss_dssp             TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS-SEEEEEECBCCSS
T ss_pred             HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCC-CCCceEECccccc
Confidence            56666799999999999987  89999999999998644 4789999988643

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=2.7e-20  Score=138.33  Aligned_cols=114  Identities=18%  Similarity=0.317  Sum_probs=92.9

Q ss_pred             cccceecchheecccccceeeEEeeec-------cCCCccEEEe--c-C------------eEEeecccCCCCCCeeecE
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA--D-K------------VAEETGMPPWVVVSIFIER  106 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~--~-~------------~k~kTkv~kktlnP~wnEt  106 (173)
                      ..|+|++++.|.  ...|.+.++..+.       +..||||+++  . .            .++||+++++|+||+|||+
T Consensus         5 ~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~   82 (142)
T 1rh8_A            5 ITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT   82 (142)
T ss_dssp             CCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred             cceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCE
Confidence            468999999998  4556655555432       3469999998  1 1            3589999999999999999


Q ss_pred             EEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCC
Q psy12096        107 QILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  164 (173)
Q Consensus       107 f~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~  164 (173)
                      |.|..++.+++....|.|.|||+|.++++++||++.++|..+........||+|++..
T Consensus        83 f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            9996466666666799999999999999999999999999987666678999998764

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.81  E-value=2.4e-19  Score=137.02  Aligned_cols=117  Identities=17%  Similarity=0.271  Sum_probs=94.5

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe--c----CeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA--D----KVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~--~----~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      ...|+|.+++.|......|.+.++..+.       +..||||+++  .    ..++||+++++++||+|||+|.|. ++.
T Consensus        21 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~   99 (166)
T 2cm5_A           21 EERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKH   99 (166)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCG
T ss_pred             CccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEE-cch
Confidence            3458999999999888888877766542       3479999998  1    368999999999999999999999 988


Q ss_pred             ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc------------cccccceeEeCccCCc
Q psy12096        115 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID------------LAQTIEEWRELQSVEG  165 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~------------~~~~~~~W~~L~p~~~  165 (173)
                      .++....|.|.|||+|.++++++||++.++|..+.            .+.....|+.|.++..
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~~  162 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENH  162 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC---
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCccc
Confidence            77777799999999999999999999999998742            2334467888876543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.81  E-value=1.5e-19  Score=134.46  Aligned_cols=114  Identities=21%  Similarity=0.228  Sum_probs=95.3

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe-c-----CeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA-D-----KVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~-~-----~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      .|+|.+++.|......|.+.|+..+.       +..||||+++ .     ..++||+++++++||.|||+|.|..++..+
T Consensus        15 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   94 (142)
T 2chd_A           15 LGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED   94 (142)
T ss_dssp             CCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHH
T ss_pred             cceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHH
Confidence            48899999999888888877766532       3469999998 1     368999999999999999999998455555


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      +....|.|.|||+|.++++++||++.++|..+..++....|+.|+.+
T Consensus        95 ~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           95 MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             HHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             ccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            54468999999999999999999999999999877777889988754

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.80  E-value=6.1e-20  Score=138.33  Aligned_cols=111  Identities=15%  Similarity=0.311  Sum_probs=90.5

Q ss_pred             cccceecchheecccccceeeEEeeec-------cCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      ..|+|.+++.|......|.+.|+..+.       +..||||+++   ..   .++||+++++++||+|||+|.|. ++..
T Consensus        15 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~   93 (153)
T 1w15_A           15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPCE   93 (153)
T ss_dssp             -CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCSS
T ss_pred             cccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEE-CCHH
Confidence            458999999999888888877766532       3469999998   22   27899999999999999999999 9888


Q ss_pred             cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      ++....|.|.|||+|.++++++||++.++|...  ..+..+|++|..
T Consensus        94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~l~~  138 (153)
T 1w15_A           94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD  138 (153)
T ss_dssp             SSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred             HhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence            777779999999999999999999999999872  334456666543

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.80  E-value=2.2e-19  Score=138.44  Aligned_cols=112  Identities=14%  Similarity=0.258  Sum_probs=91.5

Q ss_pred             cccceecchheecccccceeeEEeee--------ccCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      ..|+|.+.+.|  ....|.+.|+..+        .+..||||+++   ..   .++||+++++|+||+|||+|.|. +..
T Consensus        17 ~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~   93 (171)
T 2q3x_A           17 AMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD-ESP   93 (171)
T ss_dssp             CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECS-SCC
T ss_pred             CccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEE-ecC
Confidence            34999999999  3455665555442        24468999998   22   38899999999999999999999 864


Q ss_pred             ccCCCCEEEEEEE-EcCCCCCCceeEEEEEeCCccccccccceeEeCccCCcc
Q psy12096        115 ADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  166 (173)
Q Consensus       115 ~~l~~~~L~~~V~-D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~  166 (173)
                      .   ...|.|.|| |+|.++++++||++.++|..+..++....||+|++....
T Consensus        94 ~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  143 (171)
T 2q3x_A           94 Q---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSL  143 (171)
T ss_dssp             T---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGGG
T ss_pred             C---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcccc
Confidence            2   468999999 999999999999999999999877778899999887653

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=7e-19  Score=144.19  Aligned_cols=117  Identities=33%  Similarity=0.544  Sum_probs=100.9

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +..|+|++++.|......|.+.|+..+.       +..||||+++    ...+++|+++++++||.|||+|.|. ++.++
T Consensus         3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~-v~~~~   81 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSE   81 (284)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEEC-CCGGG
T ss_pred             cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEE-echHH
Confidence            3458999999999888888877765542       3579999998    2457899999999999999999999 98888


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  165 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~  165 (173)
                      +....|.|.|||+|.++++++||++.++|..+..++....|++|.+..+
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  130 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK  130 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc
Confidence            7778999999999999999999999999999987777789999988654

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=2.4e-18  Score=129.13  Aligned_cols=111  Identities=18%  Similarity=0.281  Sum_probs=89.1

Q ss_pred             cccceecchheecccccceeeEEeeec-------cCCCccEEEe-c-----CeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA-D-----KVAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~-~-----~~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      ..|+|.+++.|..  ..|.+.|+..+.       +..||||+++ .     ..++||+++++++||.|||+|.|. +...
T Consensus        18 ~~G~l~~~l~~~~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~   94 (149)
T 1a25_A           18 RRGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKES   94 (149)
T ss_dssp             TTCEEEEEEEESS--SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCSG
T ss_pred             cceEEEEEEEecC--CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEE-eccc
Confidence            4588998888853  445555444431       3469999998 1     458999999999999999999999 8765


Q ss_pred             cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCC
Q psy12096        116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  164 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~  164 (173)
                      ++. ..|.|.|||+|.++++++||++.++|..+... ..+.||+|.+..
T Consensus        95 ~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~  141 (149)
T 1a25_A           95 DKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQE  141 (149)
T ss_dssp             GGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHH
T ss_pred             cCC-CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCC
Confidence            553 58999999999999999999999999998644 578999998763

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.77  E-value=2.8e-19  Score=148.38  Aligned_cols=152  Identities=16%  Similarity=0.265  Sum_probs=107.9

Q ss_pred             CCChhhhheeeeee-e-e-eecCCCCchhhhhhhhccCCcccCCCCCCCcccceecchheecccccceeeEEeeec----
Q psy12096          3 PFDKREVVQEVLNV-I-S-FNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKK----   75 (173)
Q Consensus         3 ~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~----   75 (173)
                      +|++|++|||+.++ | . .+.......-.+ |....+        .....|+|.+.+.|......+.+.++..+.    
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~-L~~~~~--------~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~  167 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRD-ILEGGS--------EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAM  167 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEE-CBCCSS--------CCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeec-cccccc--------cccccceEEEEEEeccccceeEEEEEEeecCCcc
Confidence            57899999999986 2 2 222211111111 111111        112348899999998877777766655432    


Q ss_pred             ---cCCCccEEEec------CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCC
Q psy12096         76 ---EIANESMKIAD------KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC  146 (173)
Q Consensus        76 ---~~~dPyVkv~~------~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~  146 (173)
                         +..||||+++-      ..++||+++++++||.|||+|.|. |+.+++....|.|.|||+|.++++++||++.+++.
T Consensus       168 d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~  246 (296)
T 1dqv_A          168 DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE  246 (296)
T ss_dssp             SSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSC
T ss_pred             CCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE-cCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCc
Confidence               34699999981      257899999999999999999999 98887777789999999999999999999999998


Q ss_pred             cccc-------------ccccceeEeCccCC
Q psy12096        147 QIDL-------------AQTIEEWRELQSVE  164 (173)
Q Consensus       147 ~l~~-------------~~~~~~W~~L~p~~  164 (173)
                      .+..             +.....|+.|++..
T Consensus       247 ~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~  277 (296)
T 1dqv_A          247 AADPHGREHWAEMLANPRKPVEHWHQLVEEK  277 (296)
T ss_dssp             TTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred             cCCchhHHHHHHHHhCCCCceeEeeeccCcc
Confidence            7642             22345677776543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.75  E-value=4.5e-18  Score=141.08  Aligned_cols=121  Identities=25%  Similarity=0.397  Sum_probs=98.7

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      .|+|++++.|......|.+.++..+.       +..||||+++    .+.++||+++++++||.|||+|.|. ++.+++.
T Consensus         6 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~   84 (296)
T 1dqv_A            6 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAELA   84 (296)
T ss_dssp             SCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGGGS
T ss_pred             eeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEE-ecHHHhc
Confidence            48999999999888888877766542       3479999998    3568899999999999999999999 9888887


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEe-CCcc-ccccccceeEeCccCCccccccC
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVA-LCQI-DLAQTIEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~-L~~l-~~~~~~~~W~~L~p~~~~~~~~~  171 (173)
                      ...|.|.|||+|+++++++||++.++ +..+ ........|++|.+..+.....|
T Consensus        85 ~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G  139 (296)
T 1dqv_A           85 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG  139 (296)
T ss_dssp             SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCC
T ss_pred             CCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccc
Confidence            77999999999999999999999996 4333 33345578999988765555444

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.75  E-value=2.1e-17  Score=123.49  Aligned_cols=91  Identities=12%  Similarity=0.194  Sum_probs=78.1

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----------CCCceeEEEEE
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----------SKHDQIGEVKV  143 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----------~~~d~IG~v~l  143 (173)
                      +..||||+++ ...+++|+++++++||.|||+|.|. +...   ...|.|.|||+|.+           +++++||++.+
T Consensus        36 g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i  111 (148)
T 3kwu_A           36 GSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFE-CHNS---SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTII  111 (148)
T ss_dssp             SCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEE-ECST---TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEE
T ss_pred             CCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEE-ecCC---CCEEEEEEEECCCCccccccccccCCCCccEEEEEE
Confidence            3579999999 6678999999999999999999999 8653   25899999999986           88999999999


Q ss_pred             eCCccccccccceeEeCccCCccccccCC
Q psy12096        144 ALCQIDLAQTIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       144 ~L~~l~~~~~~~~W~~L~p~~~~~~~~~~  172 (173)
                      +|..+.  .....|+.|.+....++.+|.
T Consensus       112 ~l~~l~--~~~~~w~~L~~~~~~~~~~G~  138 (148)
T 3kwu_A          112 EVRTLS--GEMDVWYNLDKRTDKSAVSGA  138 (148)
T ss_dssp             EGGGCC--SEEEEEEECBCSSTTCCCCCE
T ss_pred             EHHHCc--CCCCEEEEcccCCCCCCCceE
Confidence            999883  456899999988777767763

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=4.7e-18  Score=125.14  Aligned_cols=91  Identities=14%  Similarity=0.049  Sum_probs=77.1

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      +..||||++. ...++||+++++++||.|||+|.|. +..  . ...|.|.|||+|.++++++||++.++|..+..+  .
T Consensus        32 g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~-~~~--~-~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~--~  105 (133)
T 2ep6_A           32 GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP-IKD--I-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG--Q  105 (133)
T ss_dssp             SCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEE-ESC--T-TCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS--C
T ss_pred             CCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEE-ecC--C-CCEEEEEEEECCCCCCCCeeEEEEEEHHHccCC--C
Confidence            3579999999 5668899999999999999999999 864  2 358999999999999999999999999998543  4


Q ss_pred             ceeEeCccCCccccccCC
Q psy12096        155 EEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       155 ~~W~~L~p~~~~~~~~~~  172 (173)
                      ..|+.|......+...|.
T Consensus       106 ~~w~~L~~~~~~~~~~G~  123 (133)
T 2ep6_A          106 PNCYVLKNKDLEQAFKGV  123 (133)
T ss_dssp             CEECCCBCSCTTSCCSSE
T ss_pred             ceEEEeecCCCCCccceE
Confidence            689999887666666663

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.72  E-value=6.5e-17  Score=121.47  Aligned_cols=92  Identities=16%  Similarity=0.205  Sum_probs=75.8

Q ss_pred             cCCCccEEEe-c------CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA-D------KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~-~------~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      +..||||+++ .      ..++||+++++++||.|||+|.|. +...   ...|.|.|||+|.++++++||++.++|.++
T Consensus        39 g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l  114 (153)
T 3b7y_A           39 GASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFEVFDENRLTRDDFLGQVDVPLYPL  114 (153)
T ss_dssp             --CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEEEEECCSSSCCEEEEEEEEECCSC
T ss_pred             CCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEEEEECCCCcCCCeeEEEEEEHHHc
Confidence            3579999998 1      257899999999999999999999 8753   358999999999999999999999999998


Q ss_pred             cccccc------ceeEeCccCCccccccC
Q psy12096        149 DLAQTI------EEWRELQSVEGEGGQIG  171 (173)
Q Consensus       149 ~~~~~~------~~W~~L~p~~~~~~~~~  171 (173)
                      ......      ..|+.|.+....++..|
T Consensus       115 ~~~~~~~~~~~~~~w~~L~~~~~~~~~~G  143 (153)
T 3b7y_A          115 PTENPRLERPYTFKDFVLHPRSHKSRVKG  143 (153)
T ss_dssp             CBCCTTSCCCCCCEEEECBCSSTTCCCCS
T ss_pred             ccCCCcccccccccccccccccCCCCcce
Confidence            655432      48999988765555566

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.72  E-value=5.9e-18  Score=129.99  Aligned_cols=81  Identities=14%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             CCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc---
Q psy12096         77 IANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA---  151 (173)
Q Consensus        77 ~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~---  151 (173)
                      ..||||++. .. ...||+++++|+||.|||+|.|. |..    ...|.|.|||+|.++++|+||++.|+|.++..+   
T Consensus        59 ~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~-v~~----~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~  133 (157)
T 2fk9_A           59 LLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCAN-VTD----GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGA  133 (157)
T ss_dssp             CCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEE-EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTT
T ss_pred             CCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEE-cCC----CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCC
Confidence            479999998 33 34799999999999999999999 864    248999999999999999999999999988644   


Q ss_pred             -cccceeEeCcc
Q psy12096        152 -QTIEEWRELQS  162 (173)
Q Consensus       152 -~~~~~W~~L~p  162 (173)
                       ...+.|++|++
T Consensus       134 ~~~~~~W~~L~~  145 (157)
T 2fk9_A          134 SDTFEGWVDLEP  145 (157)
T ss_dssp             CSEEEEEEECBS
T ss_pred             CCcccEEEECCC
Confidence             45689999976

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=5.7e-17  Score=119.96  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=73.0

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccC-CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADA-MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      +..||||+++ ...++||+++++++||+|||+|.|. +....+ ....|.|.|||+|.++++++||++.++|..+.....
T Consensus        25 g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~  103 (140)
T 2dmh_A           25 GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQS  103 (140)
T ss_dssp             SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSC
T ss_pred             CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCC
Confidence            3579999999 5668999999999999999999999 876443 346899999999999999999999999999976766


Q ss_pred             cceeEe
Q psy12096        154 IEEWRE  159 (173)
Q Consensus       154 ~~~W~~  159 (173)
                      ...|+.
T Consensus       104 ~~~w~~  109 (140)
T 2dmh_A          104 RSLPYK  109 (140)
T ss_dssp             EEEEEE
T ss_pred             ceeEEe
Confidence            789998

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.71  E-value=9e-17  Score=116.71  Aligned_cols=83  Identities=7%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             cCCCccEEEe-c---CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA-D---KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~-~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      +..||||++. .   ..++||+++++++||+|||+|.|. +....  ...|.|.|||+|.++ +++||++.++|..+..+
T Consensus        25 g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~--~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~~  100 (126)
T 1rlw_A           25 DTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMKVG  100 (126)
T ss_dssp             CCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCEEEEEEEECCSSC-CEEEEEEEEEGGGSCTT
T ss_pred             CCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEE-ecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHccCC
Confidence            4579999998 2   468999999999999999999999 85433  458999999999885 89999999999999877


Q ss_pred             cccceeEeCcc
Q psy12096        152 QTIEEWRELQS  162 (173)
Q Consensus       152 ~~~~~W~~L~p  162 (173)
                      .....|++|.+
T Consensus       101 ~~~~~~~~L~~  111 (126)
T 1rlw_A          101 EKKEVPFIFNQ  111 (126)
T ss_dssp             CEEEEEEEETT
T ss_pred             CcEEEEEEcCC
Confidence            77789999986

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.71  E-value=1.1e-16  Score=123.42  Aligned_cols=93  Identities=16%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             cCCCccEEEe-c--C----eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA-D--K----VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~-~--~----~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      +..||||+++ .  .    .++||+++++++||.|||+|.|. +...   ...|.|.|||+|.++++++||++.++|..+
T Consensus        27 g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l  102 (176)
T 3m7f_B           27 GASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFEVFDENRLTRDDFLGQVDVPLYPL  102 (176)
T ss_dssp             CCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEEEEECC----CEEEEEEEEESCSC
T ss_pred             CCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEE-EcCC---CCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence            4579999998 1  1    57899999999999999999999 8643   358999999999999999999999999999


Q ss_pred             cccccc-c-----eeEeCccCCccccccCC
Q psy12096        149 DLAQTI-E-----EWRELQSVEGEGGQIGK  172 (173)
Q Consensus       149 ~~~~~~-~-----~W~~L~p~~~~~~~~~~  172 (173)
                      ...... +     .||.|.++...++..|.
T Consensus       103 ~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~  132 (176)
T 3m7f_B          103 PTENPRMERPYTFKDFVLHPRSHKSRVKGY  132 (176)
T ss_dssp             CBC------CCCCEEEECBCSSTTCCCCSE
T ss_pred             cccCCcccccccccEEEccccCCCCccCEE
Confidence            755432 1     79999998777777663

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.70  E-value=7.8e-17  Score=119.25  Aligned_cols=80  Identities=11%  Similarity=0.222  Sum_probs=69.0

Q ss_pred             CCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc--c
Q psy12096         78 ANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--T  153 (173)
Q Consensus        78 ~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~--~  153 (173)
                      .||||++. . ....+|+++++|+||.|||+|.|. +...    ..|.|.|||+|.++++++||++.++|.++....  .
T Consensus        38 ~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~-v~~~----~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~  112 (136)
T 1gmi_A           38 LDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTD-VCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRH  112 (136)
T ss_dssp             CCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEE-EEEE----CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSE
T ss_pred             cCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEE-ecCC----CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCC
Confidence            79999998 3 335799999999999999999999 8643    589999999999999999999999999886543  2


Q ss_pred             cceeEeCcc
Q psy12096        154 IEEWRELQS  162 (173)
Q Consensus       154 ~~~W~~L~p  162 (173)
                      .+.|++|++
T Consensus       113 ~~~w~~L~~  121 (136)
T 1gmi_A          113 FEDWIDLEP  121 (136)
T ss_dssp             EEEEEECBS
T ss_pred             ccEEEEcCC
Confidence            378999986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.70  E-value=9.5e-17  Score=117.94  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             CCCccEEEe---cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCC---CceeEEEEEeCCcc-c
Q psy12096         77 IANESMKIA---DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSK---HDQIGEVKVALCQI-D  149 (173)
Q Consensus        77 ~~dPyVkv~---~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~---~d~IG~v~l~L~~l-~  149 (173)
                      ..||||+++   ...++||+++++|+||.|||+|.|. +...    ..|.|.|||+|.+++   +++||++.+++..+ .
T Consensus        25 ~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~   99 (132)
T 3pyc_A           25 LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISR   99 (132)
T ss_dssp             CCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEE-EETT----CCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHH
T ss_pred             CcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEE-eCCC----CEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhc
Confidence            469999998   2478999999999999999999999 7542    259999999999987   79999999999888 4


Q ss_pred             cccccceeEeCccC--CccccccC
Q psy12096        150 LAQTIEEWRELQSV--EGEGGQIG  171 (173)
Q Consensus       150 ~~~~~~~W~~L~p~--~~~~~~~~  171 (173)
                      .......|++|...  ....+++|
T Consensus       100 ~~~~~~~~~~L~~~~~~~~~~~~G  123 (132)
T 3pyc_A          100 LKDTGYQRLDLCKLNPSDTDAVRG  123 (132)
T ss_dssp             HTTSCCEEEECBCSSTTCCCCCCS
T ss_pred             ccccCcEEEeeeecCCCCCCceeE
Confidence            44445789999876  33344565

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.68  E-value=7.5e-17  Score=118.74  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=70.3

Q ss_pred             cCCCccEEEe-cCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc-cccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-DLAQ  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l-~~~~  152 (173)
                      +..||||++. ...++||++++ +++||.|||+|.|. +..   ....|.|.|||+|.++++++||++.++|..+ ....
T Consensus        29 g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~  104 (136)
T 1wfj_A           29 NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS  104 (136)
T ss_dssp             CSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSE
T ss_pred             CCcCceEEEEECCccceeEeccCCCCCCccCcEEEEE-ECC---CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCC
Confidence            3579999999 55578999998 89999999999999 864   3468999999999999999999999999988 3333


Q ss_pred             ccceeEeCc
Q psy12096        153 TIEEWRELQ  161 (173)
Q Consensus       153 ~~~~W~~L~  161 (173)
                      ....|++|.
T Consensus       105 ~~~~w~~L~  113 (136)
T 1wfj_A          105 IPPTAYNVV  113 (136)
T ss_dssp             EEEEEEEEE
T ss_pred             CCcEEEEee
Confidence            457899997

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.68  E-value=1.4e-16  Score=123.54  Aligned_cols=90  Identities=10%  Similarity=0.095  Sum_probs=74.2

Q ss_pred             CCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc----
Q psy12096         78 ANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ----  152 (173)
Q Consensus        78 ~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~----  152 (173)
                      .||||+++ ...++||+++++++||+|||+|.|. +..    ...|.|.|||+|.++++++||++.++|..+....    
T Consensus        57 sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~  131 (173)
T 2nq3_A           57 PSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKL  131 (173)
T ss_dssp             CCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEE
T ss_pred             CCeEEEEEECCEEeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCc
Confidence            79999998 5578999999999999999999999 852    4689999999999999999999999999875322    


Q ss_pred             -ccceeEeCccCCccccccCC
Q psy12096        153 -TIEEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       153 -~~~~W~~L~p~~~~~~~~~~  172 (173)
                       ....|++|.......++.|+
T Consensus       132 ~~~~~~~~L~~~~~~~~~~G~  152 (173)
T 2nq3_A          132 EEVVVTLQLGGDKEPTETIGD  152 (173)
T ss_dssp             SSEEEEEEEEESSCTTSEEEE
T ss_pred             ceeEEEEECccCCCCCcccEE
Confidence             12569999876444445553

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.60  E-value=6.8e-15  Score=109.04  Aligned_cols=91  Identities=14%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             cCCCccEEEecCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc--
Q psy12096         76 EIANESMKIADKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--  152 (173)
Q Consensus        76 ~~~dPyVkv~~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~--  152 (173)
                      +..||||++. ..+.||++++ +++||.|||+|.|. +...   ...|.|.|||+| +++|++||++.++|.++....  
T Consensus        21 g~~DPYv~v~-~~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~   94 (131)
T 2cjt_A           21 EKFNTYVTLK-VQNVKSTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEE   94 (131)
T ss_dssp             GGCEEEEEEE-ETTEEEECCCEESSSCEEEEEEEEE-ECCC---SSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSC
T ss_pred             CCcCeEEEEE-ecCEEEeEecCCCCCceECCEEEEE-EeCC---CCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCC
Confidence            4579999999 3334555554 79999999999999 8742   347999999999 899999999999999885332  


Q ss_pred             ccceeEeCccC--CccccccCC
Q psy12096        153 TIEEWRELQSV--EGEGGQIGK  172 (173)
Q Consensus       153 ~~~~W~~L~p~--~~~~~~~~~  172 (173)
                      +...|+++...  ...++..|.
T Consensus        95 ~~~~~~~~~~~~~~~~g~~~G~  116 (131)
T 2cjt_A           95 GPGEWLTLDSQAIMADSEICGT  116 (131)
T ss_dssp             CCCEEEECBC----------CC
T ss_pred             CccccEEcccccccCCCcCcce
Confidence            11256666432  244555554

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.54  E-value=1.8e-14  Score=108.91  Aligned_cols=87  Identities=17%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             cCCCccEEEe-cCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~  153 (173)
                      ...|||+++. ++.++||++++ ++.||+|||+|.|+ +......+..|.|.|+||+++++|.+||++.++|.++...+.
T Consensus        35 g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~  113 (144)
T 3l9b_A           35 GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENR  113 (144)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSE
T ss_pred             CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCe
Confidence            4679999999 88899999998 69999999999999 887666778999999999999999999999999999976666


Q ss_pred             cceeEeCccC
Q psy12096        154 IEEWRELQSV  163 (173)
Q Consensus       154 ~~~W~~L~p~  163 (173)
                      ...+..|...
T Consensus       114 l~l~~~LvD~  123 (144)
T 3l9b_A          114 VEVSDTLIDD  123 (144)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEeecccCC
Confidence            6666666543

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.50  E-value=6.3e-14  Score=108.18  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=57.3

Q ss_pred             cCCCccEEEecCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096         76 EIANESMKIADKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  150 (173)
Q Consensus        76 ~~~dPyVkv~~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~  150 (173)
                      +..||||++. ....||++++ +++||.|||+|.|. +...   ...|.|.|||+| +++|++||++.++|..+..
T Consensus        30 g~~DPYV~v~-~~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           30 EKFNTYVTLK-VQNVESTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             GGCEEEEEEE-ETTEEEECCCEESSSCEEEEEEEEE-CCCT---TSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred             CCCCeEEEEE-ecceEEEEecCCCCCCCCCCEEEEE-eeCC---CCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence            4579999999 3345666665 69999999999999 8742   347999999999 8999999999999998853

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.46  E-value=2.2e-13  Score=119.77  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc-
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-  153 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~-  153 (173)
                      +..||||+++ ...+++|+++++|+||.|||+|.|. +..  .....|.|.|||+|.++++++||++.++|..+..++. 
T Consensus       406 ~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~-~~~--~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~  482 (510)
T 3jzy_A          406 GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFF-IKD--LYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES  482 (510)
T ss_dssp             SCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEE-ESC--TTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHH
T ss_pred             CCCCeEEEEEECCeeccCCccCCCCCCccCceEEEE-ecC--CCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCC
Confidence            3479999999 6678999999999999999999999 754  3345899999999999999999999999999865443 


Q ss_pred             ---cceeEeCccC
Q psy12096        154 ---IEEWRELQSV  163 (173)
Q Consensus       154 ---~~~W~~L~p~  163 (173)
                         ...|+.|...
T Consensus       483 ~~~~~~~~~l~~~  495 (510)
T 3jzy_A          483 KGPMTRRLLLHEV  495 (510)
T ss_dssp             HCSCCEEEECBSS
T ss_pred             CCceeeeecCCCC
Confidence               5789999765

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.43  E-value=3.6e-13  Score=124.93  Aligned_cols=84  Identities=8%  Similarity=0.103  Sum_probs=73.5

Q ss_pred             cCCCccEEEe-c---CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096         76 EIANESMKIA-D---KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  151 (173)
Q Consensus        76 ~~~dPyVkv~-~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~  151 (173)
                      +..||||+++ .   ..++||+++++++||+|||+|.|. +....  ...|.|.|||+|.++ +++||++.++|.++..+
T Consensus        40 g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~-v~~~~--~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g  115 (749)
T 1cjy_A           40 DTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMKVG  115 (749)
T ss_dssp             CCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCBCEEEEEECCSSS-CEEEEEECCBSTTSCTT
T ss_pred             CCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEE-ecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHcCCC
Confidence            3579999998 2   468999999999999999999999 87532  358999999999999 99999999999999777


Q ss_pred             cccceeEeCccC
Q psy12096        152 QTIEEWRELQSV  163 (173)
Q Consensus       152 ~~~~~W~~L~p~  163 (173)
                      .....|++|++.
T Consensus       116 ~~~~~w~~L~~~  127 (749)
T 1cjy_A          116 EKKEVPFIFNQV  127 (749)
T ss_dssp             CCCCEEEEETTT
T ss_pred             CceEEEEecCCC
Confidence            677899999875

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.41  E-value=5.7e-13  Score=121.52  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             cCCCccEEEe------cCeEEeecccCCC-CCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA------DKVAEETGMPPWV-VVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~------~~~k~kTkv~kkt-lnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      +..||||++.      +..++||++++++ +||+|||+|.|. |..+++.  .|.|.|||+|.++++++||++.++|..+
T Consensus       518 ~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~-v~~~el~--~L~~~V~D~D~~~~dd~iG~~~ipl~~L  594 (624)
T 1djx_A          518 SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSL  594 (624)
T ss_dssp             SCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEE-ESCGGGC--EEEEEEEECCSSSCCEEEEEEEEEGGGB
T ss_pred             CCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEE-EecCCCC--EEEEEEEEcCCCCCCceeEEEEEEHHHc
Confidence            4579999998      2368999999998 999999999999 9877664  8999999999999999999999999998


Q ss_pred             ccccccceeEeCccCCc
Q psy12096        149 DLAQTIEEWRELQSVEG  165 (173)
Q Consensus       149 ~~~~~~~~W~~L~p~~~  165 (173)
                      ..+   ..|++|....+
T Consensus       595 ~~G---~r~v~L~d~~g  608 (624)
T 1djx_A          595 KQG---YRHVHLLSKNG  608 (624)
T ss_dssp             CCE---EEEEEEECTTS
T ss_pred             CCC---cEEEeCCCCCc
Confidence            644   35888866543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.37  E-value=1e-12  Score=120.14  Aligned_cols=108  Identities=18%  Similarity=0.298  Sum_probs=82.3

Q ss_pred             cceecchheecccccceeeEEeee-------ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      +.|.++..+.  ...|.+.+....       .+..||||++.      ...+.||+++++++||.|||+|.|. +...+.
T Consensus       161 g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~-~~~~~~  237 (674)
T 3pfq_A          161 GRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ-LKESDK  237 (674)
T ss_dssp             CEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEE-CCSTTT
T ss_pred             ccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeee-cccCCc
Confidence            4555555444  333444333332       23579999998      2347899999999999999999999 876554


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                       ...|.|.|||+|.++++++||++.++|..+... ....|+.|.+.
T Consensus       238 -~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls~  281 (674)
T 3pfq_A          238 -DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  281 (674)
T ss_dssp             -TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBCT
T ss_pred             -cceeeeEEeecccccccccccccccchhhhccC-Ccccceeeccc
Confidence             357999999999999999999999999998644 45899998654

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.37  E-value=1.2e-12  Score=117.65  Aligned_cols=79  Identities=15%  Similarity=0.045  Sum_probs=65.3

Q ss_pred             CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096         77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE  155 (173)
Q Consensus        77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~  155 (173)
                      ..||||++. ...+.||+++++++||.|||+|.|. +.... ....|.|.|||+|.+++||+||++.++|..    +...
T Consensus       413 ~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~-~~~~~-~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~----g~~~  486 (540)
T 3nsj_A          413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFE-NVLLS-TGGPLRVQVWDADYGWDDDLLGSCDRSPHS----GFHE  486 (540)
T ss_dssp             CCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEE-EEETT-TCCCEEEEEEECCSSSCCEEEEEEEECCCS----EEEE
T ss_pred             CcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEE-EecCC-CCCEEEEEEEECCCCCCCCEEEEEEEEeeC----CcEE
Confidence            469999998 5567999999999999999999998 53211 245899999999999999999999999972    2346


Q ss_pred             eeEeCc
Q psy12096        156 EWRELQ  161 (173)
Q Consensus       156 ~W~~L~  161 (173)
                      .|+.|.
T Consensus       487 ~~~~l~  492 (540)
T 3nsj_A          487 VTCELN  492 (540)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            788775

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.32  E-value=1.6e-13  Score=121.54  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=11.2

Q ss_pred             CccEEEe--cCeEEeecccCCC---CCCeeecEEEecccCcccCCCCEEEEEEEE-cC---CCCCCceeEEEEEeCCccc
Q psy12096         79 NESMKIA--DKVAEETGMPPWV---VVSIFIERQILEGVPYADAMNKTLVFAIFD-FD---RFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        79 dPyVkv~--~~~k~kTkv~kkt---lnP~wnEtf~F~gV~~~~l~~~~L~~~V~D-~d---~~~~~d~IG~v~l~L~~l~  149 (173)
                      ||||+++  ...+.||+++++|   +||.|||+|.|. +... .  ..|.|.||| +|   +++++++||++.+++..+.
T Consensus        28 dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~-~~~~-~--~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~  103 (483)
T 3bxj_A           28 RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN-NLPA-V--RALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLA  103 (483)
T ss_dssp             -------------------------------CCEECC-------------------------------------------
T ss_pred             CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEe-cCCC-c--cEEEEEEEecCCccccCCCCceEEEEEEEHHHhc
Confidence            9999998  3346799999999   999999999999 6432 2  589999999 45   4788999999999999998


Q ss_pred             cccccceeEeCccCC
Q psy12096        150 LAQTIEEWRELQSVE  164 (173)
Q Consensus       150 ~~~~~~~W~~L~p~~  164 (173)
                      .+...+.||+|....
T Consensus       104 ~~~~~~~W~~L~~~~  118 (483)
T 3bxj_A          104 GRHFTEQWYPVTLPT  118 (483)
T ss_dssp             ---CCEECC------
T ss_pred             CCCCCCeEEECCCCC
Confidence            767778999996543

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.03  E-value=5.2e-10  Score=105.42  Aligned_cols=81  Identities=11%  Similarity=0.041  Sum_probs=62.4

Q ss_pred             cCCCccEEEe-c------CeEEeecccCC-CCCCeeec-EEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCC
Q psy12096         76 EIANESMKIA-D------KVAEETGMPPW-VVVSIFIE-RQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC  146 (173)
Q Consensus        76 ~~~dPyVkv~-~------~~k~kTkv~kk-tlnP~wnE-tf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~  146 (173)
                      ...||||++. .      ..++||+++++ ++||+||| +|.|..|...++.  .|+|.|||+|    +++||++.+||.
T Consensus       740 ~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela--~Lrf~V~D~d----ddfiG~~~lpL~  813 (885)
T 3ohm_B          740 RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLA--SLRIAAFEEG----GKFVGHRILPVS  813 (885)
T ss_dssp             SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGC--EEEEEEEETT----TEEEEEEEEETT
T ss_pred             cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcC--EEEEEEEcCC----ccEEeeEEEEHH
Confidence            3579999997 1      23689999986 59999999 6999745555654  7999999997    799999999999


Q ss_pred             ccccccccceeEeCccCCc
Q psy12096        147 QIDLAQTIEEWRELQSVEG  165 (173)
Q Consensus       147 ~l~~~~~~~~W~~L~p~~~  165 (173)
                      .+..+   -.+.+|....+
T Consensus       814 ~L~~G---yR~vpL~~~~g  829 (885)
T 3ohm_B          814 AIRSG---YHYVCLRNEAN  829 (885)
T ss_dssp             TCCCE---EEEEEEECTTS
T ss_pred             HcCCC---ceEEEecCCCC
Confidence            98654   23556654433

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.02  E-value=1e-09  Score=102.79  Aligned_cols=79  Identities=13%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             cCCCccEEEe------cC--eEEeecccCC-CCCCeeecE-EEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeC
Q psy12096         76 EIANESMKIA------DK--VAEETGMPPW-VVVSIFIER-QILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL  145 (173)
Q Consensus        76 ~~~dPyVkv~------~~--~k~kTkv~kk-tlnP~wnEt-f~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L  145 (173)
                      ...||||++.      +.  .++||+++++ ++||+|||+ |.|..|..+++.  .|+|.|||++    +++||++.+||
T Consensus       665 ~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela--~Lrf~V~D~d----ddfiG~~~ipL  738 (816)
T 3qr0_A          665 KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRIIVSEEN----GKFIGHRVMPL  738 (816)
T ss_dssp             SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGC--EEEEEEEETT----SCEEEEEEEES
T ss_pred             CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCcc--EEEEEEEecC----CCeeeEEEEEH
Confidence            4579999997      12  5789999886 599999998 999745666664  8999999985    79999999999


Q ss_pred             CccccccccceeEeCccC
Q psy12096        146 CQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       146 ~~l~~~~~~~~W~~L~p~  163 (173)
                      +.+..+   -.|.+|...
T Consensus       739 ~~L~~G---yR~vpL~~~  753 (816)
T 3qr0_A          739 DGIKPG---YRHVPLRNE  753 (816)
T ss_dssp             TTCCCE---EEEEEEECT
T ss_pred             HHcCCc---ceEEEEeCC
Confidence            998754   235556444

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.00  E-value=6.3e-10  Score=103.99  Aligned_cols=78  Identities=12%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             cCCCccEEEe--c-----CeEEeec-ccC-CCCCCeeec-EEEe-cccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096         76 EIANESMKIA--D-----KVAEETG-MPP-WVVVSIFIE-RQIL-EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA  144 (173)
Q Consensus        76 ~~~dPyVkv~--~-----~~k~kTk-v~k-ktlnP~wnE-tf~F-~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~  144 (173)
                      ...||||++.  .     .+++||+ +++ +++||+||| +|.| . |..+++.  .|+|.|||+|    +++||++.+|
T Consensus       693 ~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~-v~~~el~--~Lr~~V~D~d----~d~iG~~~ip  765 (799)
T 2zkm_X          693 RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK-ILMPELA--SLRVAVMEEG----NKFLGHRIIP  765 (799)
T ss_dssp             SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEE-ESSGGGC--EEEEEEEETT----TEEEEEEEEE
T ss_pred             cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEE-EccCCcc--EEEEEEEEeC----CCccceEeee
Confidence            4579999998  1     1368999 776 469999999 7999 7 8877776  7999999997    7999999999


Q ss_pred             CCccccccccceeEeCccC
Q psy12096        145 LCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       145 L~~l~~~~~~~~W~~L~p~  163 (173)
                      |..+..+   -.|.+|...
T Consensus       766 l~~L~~G---~r~v~L~~~  781 (799)
T 2zkm_X          766 INALNSG---YHHLCLHSE  781 (799)
T ss_dssp             GGGBCCE---EEEEEEECT
T ss_pred             hhhcCCC---cEEEeccCC
Confidence            9998654   346667544

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.72  E-value=3.9e-08  Score=72.47  Aligned_cols=80  Identities=13%  Similarity=0.100  Sum_probs=62.1

Q ss_pred             cCCCccEEEecCe-----EEee-cccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         76 EIANESMKIADKV-----AEET-GMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        76 ~~~dPyVkv~~~~-----k~kT-kv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      ...|||+.+.-+.     +.+| ...++|..|.|||+|... |..    .+.|+|.|+.-..    +|+..+.+++.++.
T Consensus        25 ~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh~a~----~fvAn~tV~~edL~   95 (126)
T 1yrk_A           25 EANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAAE----EPVSEVTVGVSVLA   95 (126)
T ss_dssp             SSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEETT----EEEEEEEEEHHHHH
T ss_pred             ccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEee-eeC----CEEEEEEEEcCCC----CeeeEEEEEHHHHH
Confidence            3469999888211     2355 778899999999999998 764    5799999996443    99999999999886


Q ss_pred             -----cccccceeEeCccCC
Q psy12096        150 -----LAQTIEEWRELQSVE  164 (173)
Q Consensus       150 -----~~~~~~~W~~L~p~~  164 (173)
                           .+...+.|.+|+|..
T Consensus        96 ~~c~~~~g~~e~WvdLeP~G  115 (126)
T 1yrk_A           96 ERCKKNNGKAEFWLDLQPQA  115 (126)
T ss_dssp             HHHHTTTTEEEEEEECBSSC
T ss_pred             hhhccCCCceEEEEecccCc
Confidence                 233457899999954

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.63  E-value=4.9e-08  Score=72.92  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=62.1

Q ss_pred             cCCCccEEEe--cC---eEEee-cccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         76 EIANESMKIA--DK---VAEET-GMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        76 ~~~dPyVkv~--~~---~k~kT-kv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      ...|||+.+.  ..   .+.+| ...++|..|+|||+|... |..    .+.|+|.|+.-..    +|+..+.+++.++.
T Consensus        30 ~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh~a~----~fVAn~tV~~edL~  100 (138)
T 2enj_A           30 EAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAH-INK----GRVMQIIVKGKNV----DLISETTVELYSLA  100 (138)
T ss_dssp             CCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEEC-CCS----SCEEEEEEECSSC----SCCEEEEEESHHHH
T ss_pred             ccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeee-EEC----CeEEEEEEEcCCC----CeeeEEEEEHHHHH
Confidence            3469999887  22   13667 667789999999999998 764    5799999994332    89999999999986


Q ss_pred             -----cccccceeEeCccCC
Q psy12096        150 -----LAQTIEEWRELQSVE  164 (173)
Q Consensus       150 -----~~~~~~~W~~L~p~~  164 (173)
                           .+...+.|.+|+|..
T Consensus       101 ~~ck~~~g~~e~WvdLeP~G  120 (138)
T 2enj_A          101 ERCRKNNGKTEIWLELKPQG  120 (138)
T ss_dssp             HHHHHTTTCEEEEEECBSSC
T ss_pred             hhhccCCCceEEEEecccCc
Confidence                 233457899999954

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.57  E-value=0.078  Score=42.26  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=48.3

Q ss_pred             eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC----CCCceeEEEEEeCCcc
Q psy12096         88 VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALCQI  148 (173)
Q Consensus        88 ~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~----~~~d~IG~v~l~L~~l  148 (173)
                      ...+|-|...+.+|.|+|++... ||.+...+.-|.|+++....-    .....+|-+.+||-.-
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             eeEEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            36888899889999999999999 999888888999999864322    1234789999998643

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=88.79  E-value=1.6  Score=41.54  Aligned_cols=88  Identities=10%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             cccccceeeEEeeecc----CCCccEEEe---cC----eEEeecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEE
Q psy12096         61 DVSEELSSTVASIKKE----IANESMKIA---DK----VAEETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFD  128 (173)
Q Consensus        61 ~~~~~l~~lv~~ik~~----~~dPyVkv~---~~----~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D  128 (173)
                      .....+...+.++..-    ..+-||.+.   ..    ....|..+.-..+|.|||.+.|+ +...+++ +..|.|+||+
T Consensus       214 ~~~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEEEEE
T ss_pred             hcCCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcc-cccccCCcccEEEEEEEE
Confidence            4445555555555432    223455544   11    12345444446789999999999 8888876 5689999999


Q ss_pred             cCCC--C----------CCceeEEEEEeCCccc
Q psy12096        129 FDRF--S----------KHDQIGEVKVALCQID  149 (173)
Q Consensus       129 ~d~~--~----------~~d~IG~v~l~L~~l~  149 (173)
                      ...-  +          ....||.+.++|-+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCc
Confidence            6432  1          2359999999987653

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=82.89  E-value=4.6  Score=39.04  Aligned_cols=87  Identities=11%  Similarity=0.078  Sum_probs=54.2

Q ss_pred             cccccceeeEEeeec------cCCCccEEEe--cC-----eEEeecccCCCCCCeeecEEEecccCcccCC-CCEEEEEE
Q psy12096         61 DVSEELSSTVASIKK------EIANESMKIA--DK-----VAEETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAI  126 (173)
Q Consensus        61 ~~~~~l~~lv~~ik~------~~~dPyVkv~--~~-----~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V  126 (173)
                      +....+...+.++..      ...+-||.+.  .+     ....|+.+. ..+|.|||.+.|+ |...+++ ...|.|+|
T Consensus       352 ~~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~-i~i~dLPr~arL~~tl  429 (1091)
T 3hhm_A          352 VINSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYD-IYIPDLPRAARLCLSI  429 (1091)
T ss_dssp             GCCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEE-EEGGGCCTTCEEEEEE
T ss_pred             hCCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEec-CccccCChhcEEEEEE
Confidence            344445555544421      1234577766  11     123444333 4578899999999 9888876 46799999


Q ss_pred             EEcCCC----CCCceeEEEEEeCCccc
Q psy12096        127 FDFDRF----SKHDQIGEVKVALCQID  149 (173)
Q Consensus       127 ~D~d~~----~~~d~IG~v~l~L~~l~  149 (173)
                      |+....    ..+..||.+.++|-+..
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBCTT
T ss_pred             EEecCccCcccccceeEEeeeeeEccC
Confidence            986642    12458999999987763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-10
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-09
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-07
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-07
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-07
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	5e-07
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	1e-06
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-05
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-05
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-04
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-04
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-04
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	5e-04
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	0.001

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 30/51 (58%), Positives = 37/51 (72%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 103 FIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQ 161
           F E     G+PY       L F I  FDRFS+ D IGEV + L  I+L++  +   RE+ 
Sbjct: 73  FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132

Query: 162 S 162
           S
Sbjct: 133 S 133

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 101 SIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
             + +  I + +     M KTL   ++D+DRFS +D +GEV + L           W  L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

Query: 161 QS 162
           + 
Sbjct: 137 KE 138

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 159
            + +  I   V   +   + L   ++D  R  +   + +GE+ + L    L      W +
Sbjct: 65  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYK 123

Query: 160 LQ 161
           LQ
Sbjct: 124 LQ 125

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168
           +   +    TL   +   DRFS+H   GE+++ L    +     +W EL++     G
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 5e-07
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV-EGE 166
            ++ L   I+D+D  S++D +G +   + ++  A  ++ W +L S  EGE
Sbjct: 80  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE--WRELQS 162
           VP A+   + L F+++DFDRFS+HD IG+V +        Q  +   WR++  
Sbjct: 76  VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           V      N  L  A+ D+D    ++ IG  +V     D     E W E+ +
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
           +P       ++ F + D +R S+++ IG + +             W+E+  
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT--AEGSGGGHWKEICD 123

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 19/90 (21%)

Query: 87  KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC 146
            + + T  P +     F        VP+       +V  + D+D+  K+D IG+V V   
Sbjct: 67  TIKKNTLNPYYNESFSFE-------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

Query: 147 QIDLA------------QTIEEWRELQSVE 164
                            + I +W  LQ  E
Sbjct: 120 STGAELRHWSDMLANPRRPIAQWHTLQVEE 149

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE-EWRELQSVEGEGGQI 170
               L   IFD D  ++ D +GE  + L  + +  +I      +   E   G+I
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 6/78 (7%), Positives = 15/78 (19%), Gaps = 1/78 (1%)

Query: 86  DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 145
               +           I                   L   + D +     + +G     +
Sbjct: 36  STTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTV 94

Query: 146 CQIDLAQTIEEWRELQSV 163
             + + +  E       V
Sbjct: 95  SSMKVGEKKEVPFIFNQV 112

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 83  KIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 142
           K   ++ ++T  P +     +        + ++D   K+L  +++D+D    +D IG  +
Sbjct: 53  KHKTQIKKKTLNPEFNEEFFYD-------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQ 105

Query: 143 VALCQIDLAQTIEEWRELQSVEGE 166
           + +      + ++ W E    + +
Sbjct: 106 LGIS--AKGERLKHWYECLKNKDK 127

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172
           ++  L   +FD D     D +G+V + L  I   Q       L++ + E    G 
Sbjct: 64  IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKDLEQAFKGV 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.88
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.88
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.84
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.84
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.83
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.82
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.82
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.82
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.82
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.81
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.79
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.72
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.7
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.65
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.65
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.62
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.61
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.55
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.52
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.29
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.33

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-22  Score=149.10  Aligned_cols=118  Identities=18%  Similarity=0.234  Sum_probs=103.1

Q ss_pred             CCcccceecchheecccccceeeEEeee----ccCCCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         47 EDEEEDLEMTEAFEDVSEELSSTVASIK----KEIANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        47 ~~~~~~l~~~~~~~~~~~~l~~lv~~ik----~~~~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      ..+..+|++++.|....++|.+.|+..+    .+..||||+++     ...++||++++++.||.|||+|.|. |+..++
T Consensus         9 ~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~-v~~~~l   87 (138)
T d1wfma_           9 WNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LAEEEL   87 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CCTTSS
T ss_pred             CCcCCEEEEEEEECCCCCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEE-eeehhc
Confidence            5667899999999999888887776654    24569999998     2236889999999999999999999 998888


Q ss_pred             CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCc
Q psy12096        118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  165 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~  165 (173)
                      ....|.|+|||+++++++++||++.|+|.++......+.|++|++...
T Consensus        88 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~  135 (138)
T d1wfma_          88 PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP  135 (138)
T ss_dssp             TTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred             cceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence            888999999999999999999999999999987778899999988654

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.7e-22  Score=150.00  Aligned_cols=117  Identities=33%  Similarity=0.538  Sum_probs=100.5

Q ss_pred             CCCcccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         46 PEDEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        46 ~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      +.+.-|+|++++.|....++|.+.|+.++.       +..||||+++    .+.+.+|++++++.||.|||+|.|. |+.
T Consensus        16 ~~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~-i~~   94 (143)
T d1rsya_          16 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPY   94 (143)
T ss_dssp             --CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CCH
T ss_pred             chhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEE-EEe
Confidence            344458999999999988899887776642       3469999998    4457899999999999999999999 988


Q ss_pred             ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        115 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      .++....|.|+|||++.++++++||++.|+|.++..++...+||+|+.+
T Consensus        95 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~sa  143 (143)
T d1rsya_          95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             eccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCCC
Confidence            7777789999999999999999999999999999878778899999763

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=137.16  Aligned_cols=110  Identities=22%  Similarity=0.265  Sum_probs=88.9

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADA  117 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l  117 (173)
                      |+|++++.|....++|.+.|+..+.       +..||||+++      ...++||++++++.||.|||+|.|..++.+++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            6789999999999999888776542       3468999997      34578999999999999999999975777778


Q ss_pred             CCCEEEEEEEEcCCCC--CCceeEEEEEeCCccccccccceeEeCc
Q psy12096        118 MNKTLVFAIFDFDRFS--KHDQIGEVKVALCQIDLAQTIEEWRELQ  161 (173)
Q Consensus       118 ~~~~L~~~V~D~d~~~--~~d~IG~v~l~L~~l~~~~~~~~W~~L~  161 (173)
                      ....|.|+|||++.++  ++++||++.++|+++...+ ..+||+|+
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            7789999999999864  4679999999999987554 46899995

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.1e-21  Score=144.63  Aligned_cols=113  Identities=18%  Similarity=0.326  Sum_probs=92.7

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe---c------------CeEEeecccCCCCCCeeecEE
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D------------KVAEETGMPPWVVVSIFIERQ  107 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~------------~~k~kTkv~kktlnP~wnEtf  107 (173)
                      .|+|++++.|.  ...|.+.|+..+.       +..||||+++   .            ..++||+++++++||.|||+|
T Consensus         6 ~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T d1rh8a_           6 TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             CCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             ceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEE
Confidence            38999999996  3556655554432       3469999997   1            124689999999999999999


Q ss_pred             EecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCC
Q psy12096        108 ILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  164 (173)
Q Consensus       108 ~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~  164 (173)
                      .|..++.+++....|.|+|||+|.++++++||++.|+|.++...+....||+|++++
T Consensus        84 ~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            998566667777899999999999999999999999999998777788999998875

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=9.5e-21  Score=138.42  Aligned_cols=112  Identities=24%  Similarity=0.333  Sum_probs=93.5

Q ss_pred             cceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCCC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMN  119 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~  119 (173)
                      |+|++++.|.....+|.+.|+.++.       +..||||+++    .+.++||++++++.||.|||+|.|. ++..++..
T Consensus         5 G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~~~~   83 (130)
T d1dqva1           5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAELAQ   83 (130)
T ss_dssp             CEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGGGSS
T ss_pred             EEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEE-EchHHcCC
Confidence            8999999999999899887776542       3468999998    3457999999999999999999999 98888887


Q ss_pred             CEEEEEEEEcCCCCCCceeEEEEEeCCccc--cccccceeEeCccC
Q psy12096        120 KTLVFAIFDFDRFSKHDQIGEVKVALCQID--LAQTIEEWRELQSV  163 (173)
Q Consensus       120 ~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~--~~~~~~~W~~L~p~  163 (173)
                      ..|.|+|||+|.++++++||++.|++....  .......|++|.+.
T Consensus        84 ~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          84 RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             CCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            889999999999999999999999864332  22234579999763

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.1e-20  Score=139.84  Aligned_cols=114  Identities=20%  Similarity=0.357  Sum_probs=95.5

Q ss_pred             cccceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096         49 EEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYA  115 (173)
Q Consensus        49 ~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~  115 (173)
                      +.|+|++++.|....++|.+.|..++.       ...||||+++   .   ..++||++++++.||+|||+|.|. |+.+
T Consensus        10 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~-v~~~   88 (157)
T d1uowa_          10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFE   88 (157)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCGG
T ss_pred             eeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE-ecHH
Confidence            458999999999999999888776642       3568999998   2   235789999999999999999999 9988


Q ss_pred             cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc------------cccccceeEeCccC
Q psy12096        116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID------------LAQTIEEWRELQSV  163 (173)
Q Consensus       116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~------------~~~~~~~W~~L~p~  163 (173)
                      ++....|.|+|||++.++++++||++.|++.+..            +......||.|++.
T Consensus        89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_          89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             HcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            8888899999999999999999999999997632            22344689999875

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=5e-20  Score=135.67  Aligned_cols=98  Identities=14%  Similarity=0.283  Sum_probs=85.2

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +|+|++++.|....++|.+.|..++.       +..||||+++      ...++||++++++.||.|||+|.|. ++..+
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~~~   79 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPCES   79 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEE-ecHHH
Confidence            48999999999999888877776543       3468999998      2246789999999999999999999 99888


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      +....|.|.|||+|.++++++||++.|++.+.
T Consensus        80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             STTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             hCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            88888999999999999999999999999764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.6e-20  Score=135.35  Aligned_cols=111  Identities=17%  Similarity=0.307  Sum_probs=88.9

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      +++|.|.+.+.|..  +.|.+.|+.++.       +..||||+++      ...++||+++++|.||+|||+|.|. ++.
T Consensus         1 ~~rG~i~l~~~~~~--~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~   77 (132)
T d1a25a_           1 ERRGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKE   77 (132)
T ss_dssp             CTTCEEEEEEEESS--SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCS
T ss_pred             CcccEEEEEEEecC--CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEE-eEc
Confidence            35688888887763  456655555432       3469999997      3457899999999999999999999 875


Q ss_pred             ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096        115 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~  163 (173)
                      ... ...|.|+|||+|.++++++||++.|+|.++... ..++||+|.+.
T Consensus        78 ~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~  124 (132)
T d1a25a_          78 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  124 (132)
T ss_dssp             GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             ccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCC
Confidence            443 348999999999999999999999999998643 56899999875

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.7e-20  Score=134.36  Aligned_cols=112  Identities=25%  Similarity=0.363  Sum_probs=93.2

Q ss_pred             cceecchheecccccceeeEEeeec--------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096         51 EDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM  118 (173)
Q Consensus        51 ~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~  118 (173)
                      |+|++++.|....++|.+.|+.++.        ...||||+++    ...++||++++++.||.|||+|.|..++..++.
T Consensus         9 G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~   88 (138)
T d1ugka_           9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQ   88 (138)
T ss_dssp             CEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGG
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcc
Confidence            8999999999999999877776542        1258999998    445789999999999999999999647777777


Q ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc-cceeEeCcc
Q psy12096        119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-IEEWRELQS  162 (173)
Q Consensus       119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~-~~~W~~L~p  162 (173)
                      ...|.|+|||+|+++++++||++.|+|.++...+. ...|..+..
T Consensus        89 ~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_          89 ELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             GCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             cceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            78999999999999999999999999999865543 346766643

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.6e-20  Score=137.43  Aligned_cols=110  Identities=15%  Similarity=0.243  Sum_probs=92.2

Q ss_pred             ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096         50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD  116 (173)
Q Consensus        50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~  116 (173)
                      +|+|++++.|.....+|.+.|..++.       +..||||+++      ...++||++++++.||.|||+|.|. |+..+
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~   79 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSD   79 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEE-eEHHH
Confidence            58999999999999898877776643       3468999997      3347899999999999999999999 99888


Q ss_pred             CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      +....|.|+|||++.++++++||++.+++..+.  .+..+|++|.+
T Consensus        80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~  123 (137)
T d2cm5a1          80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLK  123 (137)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHH
T ss_pred             ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhh
Confidence            888899999999999999999999999998653  23456666544

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.5e-20  Score=137.45  Aligned_cols=113  Identities=17%  Similarity=0.266  Sum_probs=93.4

Q ss_pred             CcccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCc
Q psy12096         48 DEEEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPY  114 (173)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~  114 (173)
                      .+-|+|++++.|.....+|.+.|..++.       +..||||+++      ...++||++++++.||.|||+|.|. |+.
T Consensus         4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~   82 (145)
T d1dqva2           4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAP   82 (145)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CCS
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEE-Eeh
Confidence            4568999999999988888887776642       3458999998      2236899999999999999999999 998


Q ss_pred             ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096        115 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  162 (173)
Q Consensus       115 ~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p  162 (173)
                      .++....|.|.|||++.++++++||++.|+|+.+.. .+..+|++|..
T Consensus        83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~  129 (145)
T d1dqva2          83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA  129 (145)
T ss_dssp             GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSS
T ss_pred             hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCc-hhhHHHHHHHh
Confidence            888888999999999999999999999999987642 23456666543

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.4e-18  Score=121.63  Aligned_cols=91  Identities=14%  Similarity=0.049  Sum_probs=78.3

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI  154 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~  154 (173)
                      +..||||++. ...+++|+++++|.||.|||+|.|. +...   ...|.|.|||++.++++++||++.++|..+..+  .
T Consensus        25 g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~--~   98 (126)
T d2ep6a1          25 GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP-IKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG--Q   98 (126)
T ss_dssp             SCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEE-ESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS--C
T ss_pred             CCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEE-Eecc---CceeEEEEEEccCCcCcceEEEEEEEHHHCCCC--C
Confidence            3569999999 6778999999999999999999999 8642   358999999999999999999999999988543  4


Q ss_pred             ceeEeCccCCccccccCC
Q psy12096        155 EEWRELQSVEGEGGQIGK  172 (173)
Q Consensus       155 ~~W~~L~p~~~~~~~~~~  172 (173)
                      ..|+.|.....+++++|.
T Consensus        99 ~~~~~l~~~~~~~~~~G~  116 (126)
T d2ep6a1          99 PNCYVLKNKDLEQAFKGV  116 (126)
T ss_dssp             CEECCCBCSCTTSCCSSE
T ss_pred             ceEEEccccCCCCceeEE
Confidence            689999888777877774

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.4e-17  Score=116.90  Aligned_cols=84  Identities=8%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             CCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096         77 IANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ  152 (173)
Q Consensus        77 ~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~  152 (173)
                      ..||||++.    ...++||++++++.||.|||+|.|. +..  .....|.|.|||+|.. ++++||++.++|..+..+.
T Consensus        26 ~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~-i~~--~~~~~L~v~V~d~d~~-~d~~lG~~~i~L~~l~~~~  101 (126)
T d1rlwa_          26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDP--NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGE  101 (126)
T ss_dssp             CCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECT--TSCCEEEEEEEECCSS-CCEEEEEEEEEGGGSCTTC
T ss_pred             CCCcEEEEEECCcccceeEeeecCCCccceeceeeeec-ccC--cccCcEEEEEEECCCC-CCCeEEEEEEEHHHccCCC
Confidence            469999998    2357899999999999999999999 753  3345899999999876 4789999999999998777


Q ss_pred             ccceeEeCccCC
Q psy12096        153 TIEEWRELQSVE  164 (173)
Q Consensus       153 ~~~~W~~L~p~~  164 (173)
                      ..+.|+.|.+..
T Consensus       102 ~~~~~~~L~~~~  113 (126)
T d1rlwa_         102 KKEVPFIFNQVT  113 (126)
T ss_dssp             EEEEEEEETTTE
T ss_pred             eEEEEEEccCCC
Confidence            778999997653

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.1e-16  Score=114.86  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=75.1

Q ss_pred             cceeeEEeeec-------cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCc
Q psy12096         65 ELSSTVASIKK-------EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD  136 (173)
Q Consensus        65 ~l~~lv~~ik~-------~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d  136 (173)
                      +|.+.|+.++.       ...||||++. ...+++|++++++.||.|||.|.|. +..    ...|.|.|||+|.+++|+
T Consensus         7 ~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~----~~~l~~~V~d~d~~~~d~   81 (133)
T d2nq3a1           7 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQTLKSDV   81 (133)
T ss_dssp             EEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECCSSSCCE
T ss_pred             EEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEE-EEe----cceeEEEEEEccCCCCCc
Confidence            45555555431       2469999999 6678999999999999999999999 864    348999999999999999


Q ss_pred             eeEEEEEeCCccccc---c--ccceeEeCccCCccccccC
Q psy12096        137 QIGEVKVALCQIDLA---Q--TIEEWRELQSVEGEGGQIG  171 (173)
Q Consensus       137 ~IG~v~l~L~~l~~~---~--~~~~W~~L~p~~~~~~~~~  171 (173)
                      +||++.++|..+...   .  ....|+.|....+..+.+|
T Consensus        82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G  121 (133)
T d2nq3a1          82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG  121 (133)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEE
T ss_pred             eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEE
Confidence            999999999876321   1  1234555544444444444

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=6.1e-16  Score=113.16  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc--c
Q psy12096         76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--Q  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~--~  152 (173)
                      ...||||.+. .+.+.+|++++ +.||.|||+|.|. +...   ...|.|.|||++.. .+++||++.|+|+++...  .
T Consensus        18 ~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~-v~~~---~~~L~v~V~d~~~~-~d~~lG~~~I~L~~l~~~~~~   91 (128)
T d2cjta1          18 EKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFE-INRL---DLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEE   91 (128)
T ss_dssp             GGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEE-ECCC---SSEEEEEEEECCSS-CEEEEEEEEEEGGGSCBCSSC
T ss_pred             CCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEe-eccc---cceEEEEEEeCCCc-CCcceEEEEEEehhhccCCCC
Confidence            4569999998 66788888886 5699999999999 8643   35899999999986 489999999999998533  3


Q ss_pred             ccceeEeCccC--CccccccCC
Q psy12096        153 TIEEWRELQSV--EGEGGQIGK  172 (173)
Q Consensus       153 ~~~~W~~L~p~--~~~~~~~~~  172 (173)
                      ....||.|.+.  ...++++|.
T Consensus        92 ~~~~W~~L~~~~~~~~gei~gt  113 (128)
T d2cjta1          92 GPGEWLTLDSQAIMADSEICGT  113 (128)
T ss_dssp             CCCEEEECBC----------CC
T ss_pred             CCCeeEECCccccCCCCEEEee
Confidence            34689999764  466777774

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1e-15  Score=111.50  Aligned_cols=83  Identities=19%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             cCCCccEEEe------cCeEEeecccCC-CCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096         76 EIANESMKIA------DKVAEETGMPPW-VVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  148 (173)
Q Consensus        76 ~~~dPyVkv~------~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l  148 (173)
                      +..||||++.      ...+++|+++++ ++||.|||+|.|. +...+.  ..|.|+|||+|.++++++||++.++|+.+
T Consensus        25 ~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~-~~~~~~--~~L~~~V~D~d~~~~d~~iG~~~i~l~~l  101 (131)
T d1qasa2          25 SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSL  101 (131)
T ss_dssp             -CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEE-ESCGGG--CEEEEEEEECCTTTCCEEEEEEEEEGGGB
T ss_pred             CCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEE-EEcchh--ceEEEEEEEecCCCCCcEEEEEEEEEecc
Confidence            3469999987      356889998765 5899999999998 766554  37999999999999999999999999988


Q ss_pred             ccccccceeEeCccCC
Q psy12096        149 DLAQTIEEWRELQSVE  164 (173)
Q Consensus       149 ~~~~~~~~W~~L~p~~  164 (173)
                      ..+   ..|++|....
T Consensus       102 ~~g---~~~~~L~~~~  114 (131)
T d1qasa2         102 KQG---YRHVHLLSKN  114 (131)
T ss_dssp             CCE---EEEEEEECTT
T ss_pred             CCC---CEEEECCCCC
Confidence            643   4588885543

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.61  E-value=6.8e-16  Score=113.26  Aligned_cols=83  Identities=11%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc-
Q psy12096         76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~-  152 (173)
                      ...||||++. .. ...+|++++++.||.|||+|.|. ++.    ...|.|.|||++.++++++||++.++|.++.... 
T Consensus        36 ~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~-v~~----~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~  110 (136)
T d1gmia_          36 FLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTD-VCN----GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS  110 (136)
T ss_dssp             CCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEE-EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC
T ss_pred             CCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEE-Eec----CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC
Confidence            4569999998 33 45789999999999999999999 864    2589999999999999999999999999885443 


Q ss_pred             -ccceeEeCccC
Q psy12096        153 -TIEEWRELQSV  163 (173)
Q Consensus       153 -~~~~W~~L~p~  163 (173)
                       ..+.|++|+|.
T Consensus       111 ~~~~~w~~L~p~  122 (136)
T d1gmia_         111 RHFEDWIDLEPE  122 (136)
T ss_dssp             SEEEEEEECBSS
T ss_pred             cceeEEEeCCCC
Confidence             34689999874

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=5.8e-15  Score=107.57  Aligned_cols=83  Identities=14%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             cCCCccEEEe-cCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc-c
Q psy12096         76 EIANESMKIA-DKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-Q  152 (173)
Q Consensus        76 ~~~dPyVkv~-~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~-~  152 (173)
                      +..||||++. ...+++|++++ ++.||.|||+|.|. +...   ...|.|.|||+|.++++++||++.|+|.++... .
T Consensus        29 g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~-v~~~---~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~  104 (136)
T d1wfja_          29 NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT-VSEG---TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS  104 (136)
T ss_dssp             CSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEE-EESS---CCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSE
T ss_pred             CCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEE-EcCc---cceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCC
Confidence            4579999999 55677888876 68999999999999 8642   347999999999999999999999999987433 2


Q ss_pred             ccceeEeCcc
Q psy12096        153 TIEEWRELQS  162 (173)
Q Consensus       153 ~~~~W~~L~p  162 (173)
                      ....|+.|..
T Consensus       105 ~~~~~~~l~~  114 (136)
T d1wfja_         105 IPPTAYNVVK  114 (136)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCcEEEEecC
Confidence            3367998853

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.5e-15  Score=107.08  Aligned_cols=79  Identities=10%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096         76 EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID  149 (173)
Q Consensus        76 ~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~  149 (173)
                      +..||||+++      .+++++|+++++|+||.|||+|.|. |..    ...|.|.|||+|    ++++|.+.+++..+.
T Consensus        22 ~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~d~d----d~~~g~~~i~l~~l~   92 (123)
T d1bdya_          22 DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAA----EDPMSEVTVGVSVLA   92 (123)
T ss_dssp             CSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEET----TEEEEEEEEEHHHHH
T ss_pred             CCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEEEcc----ccccCccEEehhhee
Confidence            5679999998      2235679999999999999999999 864    358999999987    689999999998874


Q ss_pred             c-----ccccceeEeCccC
Q psy12096        150 L-----AQTIEEWRELQSV  163 (173)
Q Consensus       150 ~-----~~~~~~W~~L~p~  163 (173)
                      .     +...+.|++|++.
T Consensus        93 ~~~~~~~~~~~~W~~L~~~  111 (123)
T d1bdya_          93 ERCKKNNGKAEFWLDLQPQ  111 (123)
T ss_dssp             HHHHTTTTEEEEEEECBSS
T ss_pred             eccccCCCcccEEEeCCCC
Confidence            3     3345689999753

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.8e-12  Score=90.33  Aligned_cols=80  Identities=11%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             ccCCCccEEEe-------cCeEEeecc--cCCCCCCeeecE-EEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096         75 KEIANESMKIA-------DKVAEETGM--PPWVVVSIFIER-QILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA  144 (173)
Q Consensus        75 ~~~~dPyVkv~-------~~~k~kTkv--~kktlnP~wnEt-f~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~  144 (173)
                      +...||||++.       ..++.+|++  ..+++||.|||. |.|..+...++.  .|.|.|||+|    +++||++.+|
T Consensus        15 ~~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~--~L~f~V~D~d----~~~lG~~~ip   88 (122)
T d2zkmx2          15 ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRVAVMEEG----NKFLGHRIIP   88 (122)
T ss_dssp             SSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEEEEEETT----TEEEEEEEEE
T ss_pred             CCCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCccc--EEEEEEECCC----CCEEEEEEEE
Confidence            45679999996       123344443  578899999975 444325555554  8999999986    7999999999


Q ss_pred             CCccccccccceeEeCccC
Q psy12096        145 LCQIDLAQTIEEWRELQSV  163 (173)
Q Consensus       145 L~~l~~~~~~~~W~~L~p~  163 (173)
                      |+.+..+   -.|.+|...
T Consensus        89 l~~l~~G---yR~vpL~~~  104 (122)
T d2zkmx2          89 INALNSG---YHHLCLHSE  104 (122)
T ss_dssp             GGGBCCE---EEEEEEECT
T ss_pred             cccCcCC---ceEEEccCC
Confidence            9988654   345566443