Psyllid ID: psy12129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MDKGSRPSEELGYQSGNMAGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAIQNQMQSKGGYEADLGVRVSARQTHTRSQRRYRKEDPNGSDSSGDVELGNSRLRAIQNQMQSKGGYEADLGVR
Secondary Structure (PSIPRED)
cccccccccccHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHccccccccccHHHHEEHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHEEEEHHHccccccccccccccccccccccccccccccccEEEEEEcccccHHcccHHHHHHHHHHHHccccccccccEEEEEEEEcHHHHHHEEEcccccccccccEcccHHHHHHHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
mdkgsrpseelgyqsgnmaGEMWLQWFSccinqptapqrkrhqvrrpmridrsmigeptnfqhtghigsgdveLGNSRLRAIQNQMqskggyeadlGVRVsarqthtrsqrryrkedpngsdssgdvelGNSRLRAIQNQMqskggyeadlgvr
Flexible Loop (DISEMBL)
mdkgsrpseelGYQSGNMAGEMWLQWFSCCINQPtapqrkrhqvrrPMRIDRSMIgeptnfqhtghigSGDVELGNSRLRAIQNQMQSkggyeadlgvrvsarqthtrsqrryrkedpngsdssgdvelGNSRLRAIQnqmqskggyeadlgvr
Low Complexity Region (SEG)
MDKGSRPSEELGYQSGNMAGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAIQNQMQSKGGYEADLGVRVSARQTHTRSQRRYRKEDPNGSDSSGDVELGNSRLRAIQNQMQSKGGYEADLGVR
Disordered region (IsUnstruct)
*****************MAGEMWLQWFSCCIN**************************************************************************************************************************
Disordered Region (DISOPRED)
*****************MAGEMWLQWFSCC**********************SMIGEPTNFQHTGHIGSGD***************************RVSARQT********************************************DLGV*
Disordered Region (DISEMBL)
**********LGYQSGNMAGEMWLQWFSCCINQPT***********PMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAIQNQMQSKGGYEADLGVRVS**************************ELGNSRLRAIQNQMQSKGGYEADLGVR
Disordered Region (DISPRO)
**************SGNMAGEMWLQWFSCCINQ***************RIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAIQNQMQSKGGYEADLGVRVSARQTHTRSQRRYRKEDPNGSDSSGDVELGNSRLRAIQNQMQSKG*YE*****R
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKGSRPSEELGYQSGNMAGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAIQNQMQSKGGYEADLGVRVSARQTHTRSQRRYRKEDPNGSDSSGDVELGNSRLRAIQNQMQSKGGYEADLGVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9VNE7	85	CDC42 small effector prot	yes	N/A	0.480	0.870	0.662	4e-24
Q5FVD7	84	CDC42 small effector prot	N/A	N/A	0.525	0.964	0.505	3e-18
Q28EW5	84	CDC42 small effector prot	yes	N/A	0.525	0.964	0.494	1e-17
Q5R4F8	84	CDC42 small effector prot	yes	N/A	0.525	0.964	0.505	1e-17
A6QLJ4	84	CDC42 small effector prot	yes	N/A	0.525	0.964	0.494	2e-17
A9JR56	85	CDC42 small effector prot	yes	N/A	0.525	0.952	0.5	5e-17
Q8BGH7	84	CDC42 small effector prot	yes	N/A	0.525	0.964	0.494	5e-17
Q9NRR3	84	CDC42 small effector prot	yes	N/A	0.525	0.964	0.494	5e-17
A1L1K4	83	CDC42 small effector prot	yes	N/A	0.519	0.963	0.483	4e-16
Q4V853	75	CDC42 small effector prot	N/A	N/A	0.409	0.84	0.528	5e-14

>sp|Q9VNE7|C42ES_DROME CDC42 small effector protein homolog OS=Drosophila melanogaster GN=Spec2 PE=1 SV=2

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEAD 95
          L AI  QMQSKGGYE +
Sbjct: 61 LNAISTQMQSKGGYETN 77

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly.
Drosophila melanogaster (taxid: 7227)

>sp|Q5FVD7|C4S2A_XENLA CDC42 small effector protein 2-A OS=Xenopus laevis GN=cdc42se2-a PE=3 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 8/89 (8%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGYE ++   V  +   T++
Sbjct: 55  SIQNQMQSKGGYEGNISSNVQMQLVDTKA 83

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly.

Xenopus laevis (taxid: 8355)

>sp|Q28EW5|C4S2A_XENTR CDC42 small effector protein 2-A OS=Xenopus tropicalis GN=cdc42se2-A PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 8/89 (8%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGY  ++   V  +   T++
Sbjct: 55  SIQNQMQSKGGYGGNMSANVQMQLVDTKA 83

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly.

Xenopus tropicalis (taxid: 8364)

>sp|Q5R4F8|C42S2_PONAB CDC42 small effector protein 2 OS=Pongo abelii GN=CDC42SE2 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 8/89 (8%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  FSCCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFSCCIAEQPQPKRRR-------RIDRSMIGEPTNFAHTAHVGSGDLFSGMNSVS 54

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGY   +   V  +   T++
Sbjct: 55  SIQNQMQSKGGYGGGMPANVQMQLVDTKA 83

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly. Alters CDC42-induced cell shape changes. In activated T-cells, may play a role in CDC42-mediated F-actin accumulation at the immunological synapse. May play a role in early contractile events in phagocytosis in macrophages.

Pongo abelii (taxid: 9601)

>sp|A6QLJ4|C42S2_BOVIN CDC42 small effector protein 2 OS=Bos taurus GN=CDC42SE2 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 8/89 (8%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGY   +   V  +   T++
Sbjct: 55  SIQNQMQSKGGYGGGMAANVQMQLVDTKA 83

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly. Alters CDC42-induced cell shape changes. In activated T-cells, may play a role in CDC42-mediated F-actin accumulation at the immunological synapse. May play a role in early contractile events in phagocytosis in macrophages.

Bos taurus (taxid: 9913)

>sp|A9JR56|C42S2_DANRE CDC42 small effector protein 2 OS=Danio rerio GN=cdc42se2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 9/90 (10%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFTGMNSVN 54

Query: 81  AIQNQMQSKGGYEAD-LGVRVSARQTHTRS 109
           +IQNQMQSKGGY  + + V V  +   T++
Sbjct: 55  SIQNQMQSKGGYGGEAMSVNVQMQLVDTKA 84

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly.

Danio rerio (taxid: 7955)

>sp|Q8BGH7|C42S2_MOUSE CDC42 small effector protein 2 OS=Mus musculus GN=Cdc42se2 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 8/89 (8%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGY   +   V  +   T++
Sbjct: 55  SIQNQMQSKGGYGGGMPANVQMQLVDTKA 83

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly. Alters CDC42-induced cell shape changes. In activated T-cells, may play a role in CDC42-mediated F-actin accumulation at the immunological synapse. May play a role in early contractile events in phagocytosis in macrophages.

Mus musculus (taxid: 10090)

>sp|Q9NRR3|C42S2_HUMAN CDC42 small effector protein 2 OS=Homo sapiens GN=CDC42SE2 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 8/89 (8%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGY   +   V  +   T++
Sbjct: 55  SIQNQMQSKGGYGGGMPANVQMQLVDTKA 83

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly. Alters CDC42-induced cell shape changes. In activated T-cells, may play a role in CDC42-mediated F-actin accumulation at the immunological synapse. May play a role in early contractile events in phagocytosis in macrophages.

Homo sapiens (taxid: 9606)

>sp|A1L1K4|C42S2_RAT CDC42 small effector protein 2 OS=Rattus norvegicus GN=Cdc42se2 PE=3 SV=2

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 9/89 (10%)

Query: 21  EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
           E WL  F+CCI +   P+R+R        IDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct: 3   EFWL-CFNCCIAEQPQPRRRR--------IDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 53

Query: 81  AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
           +IQNQMQSKGGY   +   V  +   T++
Sbjct: 54  SIQNQMQSKGGYGGGMPANVQMQLVDTKA 82

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly. Alters CDC42-induced cell shape changes. In activated T-cells, may play a role in CDC42-mediated F-actin accumulation at the immunological synapse. May play a role in early contractile events in phagocytosis in macrophages.

Rattus norvegicus (taxid: 10116)

>sp|Q4V853|C4S2C_XENLA CDC42 small effector protein 2-C OS=Xenopus laevis GN=cdc42se2-c PE=3 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 7/70 (10%)

Query: 23 WLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAI 82
          +L  FSCCI +   P+R+R       RIDRSMIGEP NF HT H+GSGD   G +   + 
Sbjct: 4  FLFCFSCCIGEQPQPKRRR-------RIDRSMIGEPMNFVHTAHVGSGDANTGFAMGGSF 56

Query: 83 QNQMQSKGGY 92
          Q+QM+SKGGY
Sbjct: 57 QDQMKSKGGY 66

Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
328700007	88	PREDICTED: CDC42 small effector protein	0.532	0.931	0.705	7e-26
242018540	102	conserved hypothetical protein [Pediculu	0.577	0.872	0.630	8e-25
195395991	147	GJ10127 [Drosophila virilis] gi|19414332	0.577	0.605	0.602	7e-24
195568487	95	GD19599 [Drosophila simulans] gi|1941981	0.480	0.778	0.662	2e-22
194898815	85	GG10922 [Drosophila erecta] gi|195502025	0.480	0.870	0.662	2e-22
194745524	172	GF18659 [Drosophila ananassae] gi|190628	0.5	0.447	0.658	2e-22
24644325	85	Spec2 [Drosophila melanogaster] gi|19511	0.480	0.870	0.662	2e-22
195451715	85	GK18946 [Drosophila willistoni] gi|19416	0.480	0.870	0.662	3e-22
195146296	95	GL23024 [Drosophila persimilis] gi|19410	0.474	0.768	0.671	4e-22
390178443	85	GA13165 [Drosophila pseudoobscura pseudo	0.474	0.858	0.671	5e-22

>gi|328700007|ref|XP_003241121.1| PREDICTED: CDC42 small effector protein homolog [Acyrthosiphon pisum]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 68/85 (80%), Gaps = 3/85 (3%)

Query: 12 GYQSGNMAGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGD 71
          GY+SGNM GE+  QWFSCC+NQ T  Q KRH  R  +RIDRSMIG PTNF+HTGHIGS D
Sbjct: 4  GYRSGNMPGEVLFQWFSCCVNQRT-QQGKRHVSR--VRIDRSMIGAPTNFRHTGHIGSSD 60

Query: 72 VELGNSRLRAIQNQMQSKGGYEADL 96
          VE+G+SRL AI  QMQSKGGYEA +
Sbjct: 61 VEMGSSRLHAIHGQMQSKGGYEATI 85

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018540|ref|XP_002429732.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514744|gb|EEB16994.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 67/92 (72%), Gaps = 3/92 (3%)

Query: 12  GYQSGNMAGEMWLQWFSCCINQPTAPQRKRHQVRRP-MRIDRSMIGEPTNFQHTGHIGSG 70
           GYQS N AGE+WLQWF CC NQP   QRKR  V+R   RIDRSMIG P NFQHT HIGSG
Sbjct: 3   GYQSSNFAGEIWLQWFGCCTNQPA--QRKRQAVQRSRARIDRSMIGYPMNFQHTVHIGSG 60

Query: 71  DVELGNSRLRAIQNQMQSKGGYEADLGVRVSA 102
           D+E+ +S L A+Q QMQSKGGY     V+++ 
Sbjct: 61  DLEIESSHLDALQGQMQSKGGYGKAYIVKINV 92

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195395991|ref|XP_002056617.1| GJ10127 [Drosophila virilis] gi|194143326|gb|EDW59729.1| GJ10127 [Drosophila virilis]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 65/93 (69%), Gaps = 4/93 (4%)

Query: 3   KGSRPSEELGYQSGNMAGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQ 62
           K  RPS +L  +  +  GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF 
Sbjct: 51  KTERPSGQLAQKMAS-TGEIWLQWFSCCFQQQRSPSRRPHQR---LRIDRSMIGNPTNFV 106

Query: 63  HTGHIGSGDVELGNSRLRAIQNQMQSKGGYEAD 95
           HTGHIGS DVEL  +RL AI  QMQSKGGYE +
Sbjct: 107 HTGHIGSADVELSANRLNAISTQMQSKGGYETN 139

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195568487|ref|XP_002102246.1| GD19599 [Drosophila simulans] gi|194198173|gb|EDX11749.1| GD19599 [Drosophila simulans]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEAD 95
          L AI  QMQSKGGYE +
Sbjct: 61 LNAISTQMQSKGGYETN 77

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194898815|ref|XP_001978959.1| GG10922 [Drosophila erecta] gi|195502025|ref|XP_002098044.1| GE24155 [Drosophila yakuba] gi|190650662|gb|EDV47917.1| GG10922 [Drosophila erecta] gi|194184145|gb|EDW97756.1| GE24155 [Drosophila yakuba]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEAD 95
          L AI  QMQSKGGYE +
Sbjct: 61 LNAISTQMQSKGGYETN 77

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745524|ref|XP_001955237.1| GF18659 [Drosophila ananassae] gi|190628274|gb|EDV43798.1| GF18659 [Drosophila ananassae]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 60/82 (73%), Gaps = 5/82 (6%)

Query: 16  GNMA--GEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVE 73
           G MA  GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVE
Sbjct: 86  GKMASNGEIWLQWFSCCFQQQRSPSRRPHQR---LRIDRSMIGNPTNFVHTGHIGSADVE 142

Query: 74  LGNSRLRAIQNQMQSKGGYEAD 95
           L  +RL AI  QMQ KGGYEA+
Sbjct: 143 LSANRLNAISTQMQGKGGYEAN 164

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24644325|ref|NP_730968.1| Spec2 [Drosophila melanogaster] gi|195111765|ref|XP_002000448.1| GI22523 [Drosophila mojavensis] gi|195343727|ref|XP_002038443.1| GM10611 [Drosophila sechellia] gi|74870069|sp|Q9VNE7.2|C42ES_DROME RecName: Full=CDC42 small effector protein homolog; Short=Dspec gi|16648294|gb|AAL25412.1| LD24607p [Drosophila melanogaster] gi|23170387|gb|AAF51990.2| Spec2 [Drosophila melanogaster] gi|193917042|gb|EDW15909.1| GI22523 [Drosophila mojavensis] gi|194133464|gb|EDW54980.1| GM10611 [Drosophila sechellia] gi|220951462|gb|ACL88274.1| Spec2-PA [synthetic construct]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEAD 95
          L AI  QMQSKGGYE +
Sbjct: 61 LNAISTQMQSKGGYETN 77

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451715|ref|XP_002073045.1| GK18946 [Drosophila willistoni] gi|194169130|gb|EDW84031.1| GK18946 [Drosophila willistoni]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEAD 95
          L AI  QMQ KGGYEA+
Sbjct: 61 LNAISTQMQGKGGYEAN 77

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195146296|ref|XP_002014123.1| GL23024 [Drosophila persimilis] gi|194103066|gb|EDW25109.1| GL23024 [Drosophila persimilis]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEA 94
          L AI  QMQ KGGYEA
Sbjct: 61 LNAISTQMQGKGGYEA 76

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178443|ref|XP_001359033.3| GA13165 [Drosophila pseudoobscura pseudoobscura] gi|388859449|gb|EAL28176.3| GA13165 [Drosophila pseudoobscura pseudoobscura]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 19 AGEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR 78
           GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +R
Sbjct: 4  TGEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANR 60

Query: 79 LRAIQNQMQSKGGYEA 94
          L AI  QMQ KGGYEA
Sbjct: 61 LNAISTQMQGKGGYEA 76

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
FB|FBgn0044823	85	Spec2 "Spec2" [Drosophila mela	0.474	0.858	0.671	8.7e-24
UNIPROTKB|Q5FVD7	84	cdc42se2-a "CDC42 small effect	0.525	0.964	0.505	3.6e-18
UNIPROTKB|E2R0M0	110	CDC42SE2 "Uncharacterized prot	0.422	0.590	0.538	1.1e-17
UNIPROTKB|Q28EW5	84	cdc42se2-A "CDC42 small effect	0.525	0.964	0.494	1.2e-17
UNIPROTKB|Q5R4F8	84	CDC42SE2 "CDC42 small effector	0.525	0.964	0.505	1.2e-17
UNIPROTKB|A6QLJ4	84	CDC42SE2 "CDC42 small effector	0.525	0.964	0.494	2e-17
ZFIN|ZDB-GENE-080204-45	85	zgc:172116 "zgc:172116" [Danio	0.525	0.952	0.5	2e-17
UNIPROTKB|E1C6D3	84	CDC42SE2 "Uncharacterized prot	0.525	0.964	0.494	2.5e-17
UNIPROTKB|Q9NRR3	84	CDC42SE2 "CDC42 small effector	0.525	0.964	0.494	3.2e-17
MGI|MGI:1919979	84	Cdc42se2 "CDC42 small effector	0.525	0.964	0.494	3.2e-17

FB|FBgn0044823 Spec2 "Spec2" [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/76 (67%), Positives = 57/76 (75%)

Query:    20 GEMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRL 79
             GE+WLQWFSCC  Q  +P R+ HQ    +RIDRSMIG PTNF HTGHIGS DVEL  +RL
Sbjct:     5 GEIWLQWFSCCFQQQRSPSRRPHQ---RLRIDRSMIGNPTNFVHTGHIGSADVELSANRL 61

Query:    80 RAIQNQMQSKGGYEAD 95
              AI  QMQSKGGYE +
Sbjct:    62 NAISTQMQSKGGYETN 77

GO:0035023 "regulation of Rho protein signal transduction" evidence=ISS

GO:0005938 "cell cortex" evidence=ISS

GO:0017048 "Rho GTPase binding" evidence=ISS

UNIPROTKB|Q5FVD7 cdc42se2-a "CDC42 small effector protein 2-A" [Xenopus laevis (taxid:8355)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 45/89 (50%), Positives = 59/89 (66%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGYE ++   V  +   T++
Sbjct:    55 SIQNQMQSKGGYEGNISSNVQMQLVDTKA 83

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0009966 "regulation of signal transduction" evidence=ISS

UNIPROTKB|E2R0M0 CDC42SE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 35/65 (53%), Positives = 45/65 (69%)

Query:    45 RRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLRAIQNQMQSKGGYEADLGVRVSARQ 104
             +R  RIDRSMIGEPTNF HT H+GSGD+  G + + +IQNQMQSKGGY   +   V  + 
Sbjct:    45 KRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGMSASVQMQL 104

Query:   105 THTRS 109
               T++
Sbjct:   105 VDTKA 109

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q28EW5 cdc42se2-A "CDC42 small effector protein 2-A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 44/89 (49%), Positives = 58/89 (65%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGY  ++   V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGNMSANVQMQLVDTKA 83

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0009966 "regulation of signal transduction" evidence=ISS

UNIPROTKB|Q5R4F8 CDC42SE2 "CDC42 small effector protein 2" [Pongo abelii (taxid:9601)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 45/89 (50%), Positives = 57/89 (64%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  FSCCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFSCCIAEQPQPKRRR-------RIDRSMIGEPTNFAHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGY   +   V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGGMPANVQMQLVDTKA 83

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0009966 "regulation of signal transduction" evidence=ISS

UNIPROTKB|A6QLJ4 CDC42SE2 "CDC42 small effector protein 2" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGY   +   V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGGMAANVQMQLVDTKA 83

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-080204-45 zgc:172116 "zgc:172116" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/90 (50%), Positives = 59/90 (65%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFTGMNSVN 54

Query:    81 AIQNQMQSKGGYEAD-LGVRVSARQTHTRS 109
             +IQNQMQSKGGY  + + V V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGEAMSVNVQMQLVDTKA 84

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0005198 "structural molecule activity" evidence=ISS

GO:0009966 "regulation of signal transduction" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1C6D3 CDC42SE2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDR+MIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRNMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGY   L   V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGGLSANVQMQLVDTKA 83

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

UNIPROTKB|Q9NRR3 CDC42SE2 "CDC42 small effector protein 2" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGY   +   V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGGMPANVQMQLVDTKA 83

GO:0005737 "cytoplasm" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IDA

GO:0009966 "regulation of signal transduction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1919979 Cdc42se2 "CDC42 small effector 2" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query:    21 EMWLQWFSCCINQPTAPQRKRHQVRRPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSRLR 80
             E WL  F+CCI +   P+R+R       RIDRSMIGEPTNF HT H+GSGD+  G + + 
Sbjct:     3 EFWL-CFNCCIAEQPQPKRRR-------RIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVS 54

Query:    81 AIQNQMQSKGGYEADLGVRVSARQTHTRS 109
             +IQNQMQSKGGY   +   V  +   T++
Sbjct:    55 SIQNQMQSKGGYGGGMPANVQMQLVDTKA 83

GO:0005198 "structural molecule activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006909 "phagocytosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VNE7	C42ES_DROME	No assigned EC number	0.6623	0.4805	0.8705	yes	N/A
Q5R4F8	C42S2_PONAB	No assigned EC number	0.5056	0.5259	0.9642	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
cd00132	42	cd00132, CRIB, PAK (p21 activated kinase) Binding	1e-06
pfam00786	59	pfam00786, PBD, P21-Rho-binding domain	6e-04
smart00285	36	smart00285, PBD, P21-Rho-binding domain	0.003

>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 53 SMIGEPTNFQHTGHIGSGDVEL-GNSRLRAIQNQMQSKGGYE 93
            I  PT+F+H  H+G   V   G +    +Q+  Q+ G   
Sbjct: 1  MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTAGISA 42

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules. Length = 42

>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 54 MIGEPTNFQHTGHIG 68
           I  PTNF+H  H+G
Sbjct: 1  EISTPTNFKHVVHVG 15

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 59

>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 55 IGEPTNFQHTGHIG 68
          I  PTNF+H  H+G
Sbjct: 1  ISTPTNFKHIAHVG 14

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
cd00132	42	CRIB PAK (p21 activated kinase) Binding Domain (PB	98.62
PF00786	59	PBD: P21-Rho-binding domain; InterPro: IPR000095 T	98.13
cd01093	46	CRIB_PAK_like PAK (p21 activated kinase) Binding D	97.79
smart00285	36	PBD P21-Rho-binding domain. Small domains that bin	97.73
KOG3671|consensus	569		91.17
KOG0578|consensus	550		89.58
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	82.65

>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=98.62  E-value=2.2e-08  Score=63.86  Aligned_cols=36  Identities=36%  Similarity=0.575  Sum_probs=26.0

Q ss_pred             cccCCCccceeeecccCCCccccchh--H-HHHHHHHHhcC
Q psy12129         53 SMIGEPTNFQHTGHIGSGDVELGNSR--L-RAIQNQMQSKG   90 (154)
Q Consensus        53 SMIG~PTNF~HtaHIGSgD~~~g~~~--~-~~lq~QM~SKG   90 (154)
                      +|||.||||+|++|||. |.+ |+..  + ..++..++++|
T Consensus         1 ~~IS~Ptnf~H~~HvG~-d~~-g~~~~~~p~~w~~l~~~~~   39 (42)
T cd00132           1 MEISTPTDFKHISHVGW-DGV-GFDGANLPPDLQSLFQTAG   39 (42)
T ss_pred             CcccCCCCcCcccccCC-CCC-CccccCCCHHHHHHHHHcc
Confidence            58999999999999999 444 4431  2 26666676655

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.

>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown

Probab=98.13  E-value=1.2e-06  Score=58.76  Aligned_cols=21  Identities=48%  Similarity=0.836  Sum_probs=15.5

Q ss_pred             ccCCCccceeeecccCCCcccc
Q psy12129         54 MIGEPTNFQHTGHIGSGDVELG   75 (154)
Q Consensus        54 MIG~PTNF~HtaHIGSgD~~~g   75 (154)
                      |||.|+||+|++|||. |.+.|
T Consensus         1 ~Is~P~nf~H~~HVg~-d~~~g   21 (59)
T PF00786_consen    1 DISNPTNFKHVAHVGW-DPNTG   21 (59)
T ss_dssp             TB---EEEEEEEEEEE-ETTTT
T ss_pred             CCCCCCCCcceeeecc-CCCcc
Confidence            7999999999999999 66554

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....

>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=97.79  E-value=1.7e-05  Score=51.39  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=24.4

Q ss_pred             cccCCCccceeeecccCCCccc-cch----hHHHHHHH
Q psy12129         53 SMIGEPTNFQHTGHIGSGDVEL-GNS----RLRAIQNQ   85 (154)
Q Consensus        53 SMIG~PTNF~HtaHIGSgD~~~-g~~----~~~~lq~Q   85 (154)
                      ++|+.|+||+|..|||. |... +|.    .|..+..+
T Consensus         1 ~~IS~P~n~~H~~Hv~~-d~~~g~f~glP~eW~~ll~~   37 (46)
T cd01093           1 PEISSPTNFKHRVHVGF-DPQTGEFTGLPEEWQRLLKS   37 (46)
T ss_pred             CccCCCCCceeeeEeeE-CCCCCcccCCCHHHHHHHHH
Confidence            57999999999999999 5533 244    77777665

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.

>smart00285 PBD P21-Rho-binding domain

Probab=97.73  E-value=2.2e-05  Score=48.80  Aligned_cols=17  Identities=47%  Similarity=0.888  Sum_probs=15.4

Q ss_pred             cCCCccceeeecccCCCc
Q psy12129         55 IGEPTNFQHTGHIGSGDV   72 (154)
Q Consensus        55 IG~PTNF~HtaHIGSgD~   72 (154)
                      |+.|+||+|++|+|. |.
T Consensus         1 IS~P~nf~H~~HVg~-d~   17 (36)
T smart00285        1 ISTPTDFKHIAHVGF-DG   17 (36)
T ss_pred             CCCCCCCcEEEEeeE-CC
Confidence            899999999999997 44

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).

>KOG3671|consensus

Probab=91.17  E-value=0.12  Score=49.02  Aligned_cols=45  Identities=31%  Similarity=0.493  Sum_probs=36.6

Q ss_pred             CCccccccccCCCccceeeecccCCCccccchh------HHHHHHHHHhcCC
Q psy12129         46 RPMRIDRSMIGEPTNFQHTGHIGSGDVELGNSR------LRAIQNQMQSKGG   91 (154)
Q Consensus        46 ~R~rIDRSMIG~PTNF~HtaHIGSgD~~~g~~~------~~~lq~QM~SKGG   91 (154)
                      ++.+|-+-=|++||||+|+.|+|- |-..||++      ++..++.+-|+-|
T Consensus       227 kksk~tk~disaPtnf~h~~hVgw-d~~~gf~~~~~p~~~dp~~nn~~s~ag  277 (569)
T KOG3671|consen  227 KKSKITKADISAPTNFPHIPHVGW-DEQVGFDSAPAPNNNDPPLNNLFSSAG  277 (569)
T ss_pred             cccccccccCCCCCCCccccccCC-CcCCCcccCCCCCCCChhhhcccccCC
Confidence            467889999999999999999999 88888764      5566666666665

>KOG0578|consensus

Probab=89.58  E-value=0.24  Score=46.85  Aligned_cols=32  Identities=31%  Similarity=0.545  Sum_probs=24.7

Q ss_pred             cccccCCCccceeeecccCCCcccc-ch----hHHHHH
Q psy12129         51 DRSMIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQ   83 (154)
Q Consensus        51 DRSMIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq   83 (154)
                      -+|=|+.|+||.|+-|.|. |..-| |+    .|..|+
T Consensus        24 ~~s~iS~P~nf~h~vHvGf-d~~tg~ftGlP~~W~~Ll   60 (550)
T KOG0578|consen   24 GKSEISSPSNFEHRVHVGF-DPVTGEFTGLPKQWQRLL   60 (550)
T ss_pred             CCCccCCCCCccceeeccc-CCCcccccCCcHHHHHHh
Confidence            3789999999999999999 66444 33    676663

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=82.65  E-value=0.55  Score=35.79  Aligned_cols=27  Identities=56%  Similarity=1.098  Sum_probs=21.9

Q ss_pred             hhhccccCCCccccccccccCCccccccccC-CCccce
Q psy12129         26 WFSCCINQPTAPQRKRHQVRRPMRIDRSMIG-EPTNFQ   62 (154)
Q Consensus        26 ~f~CCi~~~~~p~rk~~~~~~R~rIDRSMIG-~PTNF~   62 (154)
                      ||.||..      ||    |.|+.|=|-.|| +|.|-+
T Consensus        51 wfvCC~k------Rk----rsRrPIYrPvI~~~P~~~~   78 (94)
T PF05393_consen   51 WFVCCKK------RK----RSRRPIYRPVIGLEPQNLQ   78 (94)
T ss_pred             HHHHHHH------hh----hccCCccccccccCCCccc
Confidence            7899975      22    368999999999 999965

; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	1e-04

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens} Length = 59

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 49 RIDRSMIGEPTNFQHTGHIG 68
          +I ++ IG P+ F+H  H+G
Sbjct: 3  KISKADIGAPSGFKHVSHVG 22

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	98.87
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	98.12
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	97.9
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	97.75
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	97.55
2lnh_A	65	N-WAsp, neural wiskott-aldrich syndrome protein; p	96.41
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	95.89
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	95.38

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}

Probab=98.87  E-value=8.4e-10  Score=73.83  Aligned_cols=38  Identities=32%  Similarity=0.624  Sum_probs=31.7

Q ss_pred             CccccccccCCCccceeeecccCCCccccch------hHHHHHHH
Q psy12129         47 PMRIDRSMIGEPTNFQHTGHIGSGDVELGNS------RLRAIQNQ   85 (154)
Q Consensus        47 R~rIDRSMIG~PTNF~HtaHIGSgD~~~g~~------~~~~lq~Q   85 (154)
                      |+||++.+|+.||||.|++|||. |.+.||+      +|..|+..
T Consensus         1 ~~k~~k~~Is~Ptnf~Hv~HvG~-d~~~gf~~~g~pp~W~~ll~~   44 (59)
T 1cee_B            1 KKKISKADIGAPSGFKHVSHVGW-DPQNGFDVNNLDPDLRSLFSR   44 (59)
T ss_dssp             CCCCCTTTSCCCCCCEEEEEECC-CTTTCCCCSSCCHHHHHHHTT
T ss_pred             CCCCCCCcccCCCCCCCcceecc-CCCCCcccCCCCHHHHHHHHH
Confidence            46899999999999999999999 8777764      67766643

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}

Probab=98.12  E-value=7.9e-07  Score=54.48  Aligned_cols=29  Identities=31%  Similarity=0.506  Sum_probs=19.5

Q ss_pred             ccCCCccceeeecccCCCcccc-ch----hHHHHH
Q psy12129         54 MIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQ   83 (154)
Q Consensus        54 MIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq   83 (154)
                      .||.||||+|..|||. |...| |.    .|..|.
T Consensus         1 ~Is~Ptnf~H~~Hvg~-d~~tG~~~glp~~W~~ll   34 (36)
T 2qme_I            1 EISLPSDFEHTIHVGF-DAVTGEFTGMPEQWARLL   34 (36)
T ss_dssp             CBCCCEEEEEEEEECC-BTTTTBCC----------
T ss_pred             CCcCCCCCCCeeEccc-CCCCCcccCCCHHHHHHH
Confidence            4999999999999999 77666 33    555554

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}

Probab=97.90  E-value=3.4e-06  Score=51.25  Aligned_cols=22  Identities=41%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             cCCCccceeeecccCCCcccc-ch
Q psy12129         55 IGEPTNFQHTGHIGSGDVELG-NS   77 (154)
Q Consensus        55 IG~PTNF~HtaHIGSgD~~~g-~~   77 (154)
                      |+.||||+|..|+|. |.+.| |+
T Consensus         2 Is~Ptnf~H~~Hvg~-d~~tG~f~   24 (35)
T 2odb_B            2 ISAPQNFQHRVHTSF-DPKEGKFV   24 (35)
T ss_dssp             BCCCEEEEEEEEEEE-ETTTTEEE
T ss_pred             CcCCCCCcCeeeeeE-CCCCCccc
Confidence            899999999999999 77666 44

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B

Probab=97.75  E-value=8.3e-06  Score=57.48  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             cccccCCCccceeeecccCCCcccc-ch----hHHHHHH
Q psy12129         51 DRSMIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQN   84 (154)
Q Consensus        51 DRSMIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq~   84 (154)
                      ++..||.||||+|++|+|. |...| |+    .|..|+.
T Consensus         2 ~~~~Is~Ptnf~H~~HVg~-D~~tG~~~GlP~eW~~ll~   39 (80)
T 1f3m_A            2 ERPEISLPSDFEHTIHVGF-DAVTGEFTGMPEQWARLLQ   39 (80)
T ss_dssp             -------CCSSEEEEEEEE-ETTTTEEESCCHHHHHHHH
T ss_pred             CCCccCCCCCCCCeeeccc-CCCCCccCCCCHHHHHHHH
Confidence            4568999999999999998 76666 33    7777764

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}

Probab=97.55  E-value=1.5e-05  Score=48.32  Aligned_cols=20  Identities=40%  Similarity=0.625  Sum_probs=17.6

Q ss_pred             cCCCccceeeecccCCCcccc
Q psy12129         55 IGEPTNFQHTGHIGSGDVELG   75 (154)
Q Consensus        55 IG~PTNF~HtaHIGSgD~~~g   75 (154)
                      |+.|+||+|..|+|. |.+.|
T Consensus         2 IS~Ptnf~H~~Hvg~-d~~tg   21 (35)
T 2ov2_I            2 ISAPSNFEHRVHTGF-DQHEQ   21 (35)
T ss_dssp             BCCCEEEEEEEEEEE-ETTTT
T ss_pred             CcCCCCCcCeeeeee-CCCCC
Confidence            899999999999999 76555

>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}

Probab=96.41  E-value=0.00087  Score=45.83  Aligned_cols=25  Identities=40%  Similarity=0.735  Sum_probs=21.3

Q ss_pred             ccceeeecccCCCccccch------hHHHHHH
Q psy12129         59 TNFQHTGHIGSGDVELGNS------RLRAIQN   84 (154)
Q Consensus        59 TNF~HtaHIGSgD~~~g~~------~~~~lq~   84 (154)
                      |||+|++|+|. |.+.||+      .|..|+.
T Consensus         2 tnF~Hv~HVG~-D~~tGf~~~glp~eW~~ll~   32 (65)
T 2lnh_A            2 SNFQHIGHVGW-DPNTGFDLNNLDPELKNLFD   32 (65)
T ss_dssp             CCCSSCCSCCE-ETTTEECGGGCCTTHHHHHH
T ss_pred             CCCEeeeeeee-CCCCCcCCcCCCHHHHHHHH
Confidence            89999999999 9888864      7877765

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A

Probab=95.89  E-value=0.0032  Score=46.59  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=21.4

Q ss_pred             ccceeeecccCCCccccch------hHHHHHH
Q psy12129         59 TNFQHTGHIGSGDVELGNS------RLRAIQN   84 (154)
Q Consensus        59 TNF~HtaHIGSgD~~~g~~------~~~~lq~   84 (154)
                      |||+|++|+|. |.+.||+      .|..|++
T Consensus         1 tnF~Hv~HVG~-D~~tGF~~~glppeWk~LL~   31 (107)
T 1ej5_A            1 SGFKHVSHVGW-DPQNGFDVNNLDPDLRSLFS   31 (107)
T ss_dssp             CCCCCCCCCCC-BTTTBCCTTTCCHHHHHHHH
T ss_pred             CCCCcceeccc-CCCCCcCCCCCCHHHHHHHH
Confidence            79999999999 8888887      6777764

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=95.38  E-value=0.0027  Score=54.44  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=0.0

Q ss_pred             ccCCCccceeeecccCCCcccc-ch----hHHHHH
Q psy12129         54 MIGEPTNFQHTGHIGSGDVELG-NS----RLRAIQ   83 (154)
Q Consensus        54 MIG~PTNF~HtaHIGSgD~~~g-~~----~~~~lq   83 (154)
                      =|+.|+||.|+.|+|. |...| |.    .|..|+
T Consensus         7 ~is~p~n~~h~~hvg~-d~~tg~f~glP~~W~~ll   40 (423)
T 4fie_A            7 EISAPSNFEHRVHTGF-DQHEQKFTGLPRQWQSLI   40 (423)
T ss_dssp             -----------------------------------
T ss_pred             cccCCCCCCceeecCc-cCCCCCcccCCHHHHHHH
Confidence            4999999999999999 76444 44    777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1ej5a_	107	Wiscott-Aldrich syndrome protein, WASP, C-terminal	96.71

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00071  Score=48.89  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=20.2

Q ss_pred             ccceeeecccCCCccccch------hHHHHHH
Q psy12129         59 TNFQHTGHIGSGDVELGNS------RLRAIQN   84 (154)
Q Consensus        59 TNF~HtaHIGSgD~~~g~~------~~~~lq~   84 (154)
                      |||+|+.|+|. |.+.||+      .|..|++
T Consensus         1 snF~Hv~HVG~-D~~tGf~~~glp~eW~~lL~   31 (107)
T d1ej5a_           1 SGFKHVSHVGW-DPQNGFDVNNLDPDLRSLFS   31 (107)
T ss_dssp             CCCCCCCCCCC-BTTTBCCTTTCCHHHHHHHH
T ss_pred             CCCeeeeeeee-cCCCCccccCCCHHHHHHHH
Confidence            79999999999 9998864      6655544