Psyllid ID: psy12132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG
Secondary Structure (PSIPRED)
ccEEccccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEccccccccccccEEcccEEEEEEEEcccccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEccccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEccEEEEEEEEccHccccEEEEEEEEcccccEEEEEEEEEccccccccccccEEcccEEEEEEEccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
MHSITAPDMRAEIICNvyanppakvewfrdgtaitlggridmhvSSEKHSLLVRHIkdtdfgnymcqasnnlgssqqfiqlsgipnipvfqkssrrlgpdgyrLVWQVDTYSAIIQYLLKFREREG
Flexible Loop (DISEMBL)
mhsitapdmraEIICNVYanppakvewFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG
Low Complexity Region (SEG)
MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG
Disordered region (IsUnstruct)
*********RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKF*****
Disordered Region (DISOPRED)
MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP******************LVWQVDTYSAIIQYLLKFRERE*
Disordered Region (DISEMBL)
MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG
Disordered Region (DISPRO)
*HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q15772	3267	Striated muscle preferent	yes	N/A	0.5	0.019	0.375	3e-10
Q63638	3259	Striated muscle-specific	yes	N/A	0.5	0.019	0.347	2e-08
Q62407	3262	Striated muscle-specific	no	N/A	0.5	0.019	0.347	2e-08
O01761	8081	Muscle M-line assembly pr	no	N/A	0.674	0.010	0.297	1e-07
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.674	0.016	0.336	6e-07
Q96JA1	1093	Leucine-rich repeats and	no	N/A	0.547	0.063	0.323	1e-06
P36335	1092	Neural cell adhesion mole	N/A	N/A	0.634	0.073	0.369	2e-06
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.523	0.012	0.338	2e-06
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.484	0.001	0.338	2e-06
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.460	0.001	0.354	2e-06

>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein kinase OS=Homo sapiens GN=SPEG PE=1 SV=4

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
           + AP     + C + ANPP +V W +DG+A+   GR+ +    E+H+LL+R  +  D G+
Sbjct: 732 VVAPGADVLLKCIITANPPPQVSWHKDGSALRSEGRLLLRAEGERHTLLLREARAADAGS 791

Query: 64  YMCQASNNLGSS 75
           YM  A+N LG +
Sbjct: 792 YMATATNELGQA 803

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
           + AP     + C + ANPP +V W +DG+ +   GR+ +    E+H+LL+R  +  D G+
Sbjct: 737 VVAPGADVLLKCIITANPPPQVSWKKDGSVLHSEGRLLIRAEGERHTLLLREAQAADAGS 796

Query: 64  YMCQASNNLGSS 75
           Y   A+N LG +
Sbjct: 797 YTATATNELGQA 808

Isoform 2 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q62407|SPEG_MOUSE Striated muscle-specific serine/threonine-protein kinase OS=Mus musculus GN=Speg PE=1 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
           + AP     + C + ANPP +V W +DG+ +   GR+ +    E+H+LL+R  +  D G+
Sbjct: 737 VVAPGADVLLKCIITANPPPQVSWKKDGSMLHSEGRLLIRAEGERHTLLLREAQAADAGS 796

Query: 64  YMCQASNNLGSS 75
           Y   A+N LG +
Sbjct: 797 YTATATNELGQA 808

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 11   AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-----HSLLVRHIKDTDFGNYM 65
            AE++  V   P  +V+WF+DG  I +    + HV  +K     H+L+++   + DFG Y 
Sbjct: 3597 AELVVRVEGKPEPEVKWFKDGVPIAID---NQHVIEKKGENGSHTLVIKDTNNADFGKYT 3653

Query: 66   CQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGP 99
            CQA+N  G  +   +L  IP     ++++  + P
Sbjct: 3654 CQATNKAGKDETVGELK-IPKYSFEKQTAEEVKP 3686

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 7/92 (7%)

Query: 15   CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
            C+V+A+P  +V W++D  A++LG  + +   +  H+L +   + +D G Y C+A N  G 
Sbjct: 2959 CDVHAHPNPEVTWYKDSQALSLGEEVFLLPGT--HTLQLGRARLSDSGMYTCEALNAAGR 3016

Query: 75   SQQFIQLSG-IPNIPVFQKSSRRLGPDGYRLV 105
             Q+ +QLS  +P  P F+++ R  GP    LV
Sbjct: 3017 DQKLVQLSVLVP--PAFRQAPR--GPQDAVLV 3044

Homo sapiens (taxid: 9606)

>sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
           C    NPP ++ WF+    ++L  R   H++ +   L+V+++   D G Y C+ SN LG+
Sbjct: 714 CKATGNPPPRITWFKGDRPLSLTER--HHLTPDNQLLVVQNVVAEDAGRYTCEMSNTLGT 771

Query: 75  SQQFIQLSGIP 85
            +   QLS +P
Sbjct: 772 ERAHSQLSVLP 782

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Homo sapiens (taxid: 9606)

>sp|P36335|NCA12_XENLA Neural cell adhesion molecule 1-B OS=Xenopus laevis GN=ncam1-b PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 13  IICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           I C+V A+P A V WFRDG  +       I ++      SL V    + DFGNY C A N
Sbjct: 418 ITCDVLAHPSAAVSWFRDGQLLPSSNFSNIKIYNGPTFSSLEVNPDSENDFGNYNCSAVN 477

Query: 71  NLG-SSQQFIQLSG-IPNIPVFQK 92
           ++G  S +FI +    P+ P  +K
Sbjct: 478 SIGHESSEFILVQADTPSSPAIRK 501

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.

Xenopus laevis (taxid: 8355)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 15   CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
            C VYA+P  +V W++DG  ++LG   +  +    H+L +   +  D G Y+C+A N  G 
Sbjct: 2993 CEVYAHPNPEVTWYKDGQPLSLGQ--EAFLLPGTHTLRLARAQPADSGTYLCEALNAAGR 3050

Query: 75   SQQFIQLS 82
             Q+ +QL+
Sbjct: 3051 DQKMVQLN 3058

Mus musculus (taxid: 10090)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 15   CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
            C VY +PP  V WF +G  I+ G +    ++    +L V  ++++D G+Y C A+N  GS
Sbjct: 8630 CKVYGSPPISVSWFHEGNEISSGRKYQTTLTDNTCALTVNMLEESDSGDYTCIATNMAGS 8689

Query: 75   SQ 76
             +
Sbjct: 8690 DE 8691

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 15   CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
            C VY +PP  V WF DG  I+ G +    ++    +L V  +++ D G+Y C A+N  GS
Sbjct: 8591 CKVYGSPPISVLWFHDGNEISSGRKYQTTLTDNTCALTVNMLEEADAGDYTCIATNVAGS 8650

Query: 75   SQ 76
             +
Sbjct: 8651 DE 8652

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
322799121	416	hypothetical protein SINV_01539 [Solenop	0.928	0.281	0.427	3e-24
340710447	471	PREDICTED: titin-like [Bombus terrestris	0.825	0.220	0.408	2e-22
350427297	471	PREDICTED: titin-like [Bombus impatiens]	0.825	0.220	0.408	2e-22
110751164	471	PREDICTED: hemicentin-1-like [Apis melli	0.825	0.220	0.408	1e-21
383852143	484	PREDICTED: hemicentin-1-like [Megachile	0.952	0.247	0.406	2e-20
307187752	477	Limbic system-associated membrane protei	0.928	0.245	0.367	1e-19
270004453	431	hypothetical protein TcasGA2_TC003806 [T	0.936	0.273	0.391	3e-19
189235691	469	PREDICTED: similar to lachesin, putative	0.936	0.251	0.391	4e-19
242018223	500	limbic system-associated membrane protei	0.912	0.23	0.382	4e-19
332016346	321	Hemicentin-1 [Acromyrmex echinatior]	0.920	0.361	0.396	4e-18

>gi|322799121|gb|EFZ20568.1| hypothetical protein SINV_01539 [Solenopsis invicta]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 76/117 (64%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
           P++R ++ C V A P AKVEW+ +   +    RI  H +   HSLL+RH+K TD+G Y+C
Sbjct: 170 PELRVQLDCTVNAWPEAKVEWYFNNETLKYTSRIVKHNAGNDHSLLIRHVKTTDYGAYLC 229

Query: 67  QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123
           +ASN+LG +++ ++LS I N  VF+K SR      Y  +W+VD+YS +I+Y   FR+
Sbjct: 230 RASNSLGITEKIVELSEIANPAVFKKESRSTSSTSYNFIWEVDSYSPVIEYQFWFRK 286

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710447|ref|XP_003393801.1| PREDICTED: titin-like [Bombus terrestris]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 76/115 (66%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           +R ++ C V A P A VEW+ +  ++    RI  H +   HSL++R+++ TD+G Y+C+A
Sbjct: 226 IRVQLHCGVTAWPEATVEWYFNNRSVKYSSRIVKHNAGSDHSLVIRNVRTTDYGFYLCRA 285

Query: 69  SNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123
           SN+LG ++  ++LSG+ N PVF+K+S  L    Y  VW+V +YS I+QY  +FR+
Sbjct: 286 SNSLGITEAAVELSGVANPPVFKKTSHSLSKTSYNFVWEVHSYSPIVQYEFRFRK 340

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427297|ref|XP_003494714.1| PREDICTED: titin-like [Bombus impatiens]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 76/115 (66%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           +R ++ C V A P A VEW+ +  ++    RI  H +   HSL++R+++ TD+G Y+C+A
Sbjct: 226 IRVQLHCGVTAWPEATVEWYFNNRSVKYSSRIVKHNAGSDHSLVIRNVRTTDYGFYLCRA 285

Query: 69  SNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123
           SN+LG ++  ++LSG+ N PVF+K+S  L    Y  VW+V +YS I+QY  +FR+
Sbjct: 286 SNSLGITEAAVELSGVANPPVFKKTSHSLSKTSYNFVWEVHSYSPIVQYEFRFRK 340

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110751164|ref|XP_392759.3| PREDICTED: hemicentin-1-like [Apis mellifera]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 75/115 (65%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           +R ++ C V A P A VEW+ +  ++    RI  H +   HSL++R+++ TD+G Y+C+A
Sbjct: 226 IRVQLHCGVTAWPEATVEWYFNNKSVKYSSRIVKHNAGSDHSLVIRNVRTTDYGFYLCRA 285

Query: 69  SNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123
           SN+LG ++  ++LSGI N  VF+K+S  L    Y  VW+V +Y+ I+QY  KFR+
Sbjct: 286 SNSLGITEAAVELSGIANPAVFKKTSHSLSKTSYNFVWEVHSYNRIVQYEFKFRK 340

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852143|ref|XP_003701588.1| PREDICTED: hemicentin-1-like [Megachile rotundata]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 3/123 (2%)

Query: 1   MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
           MH+   P +R ++ C V A P A VEW+ +  ++    RI  H S   HSL++R+++ TD
Sbjct: 220 MHA--PPGIRVQLHCAVTAWPEATVEWYFNNKSVKYSSRIVKHNSGSDHSLVIRNVRTTD 277

Query: 61  FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLK 120
           +G Y+C+ASN+LG ++  ++LSGI N  VF+K    L    Y  VW+V +YS I+QY  +
Sbjct: 278 YGFYLCRASNSLGITEAAVELSGIANPAVFKK-KHSLSKTSYNFVWEVYSYSPIVQYEFR 336

Query: 121 FRE 123
           FR+
Sbjct: 337 FRK 339

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187752|gb|EFN72724.1| Limbic system-associated membrane protein [Camponotus floridanus]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 74/117 (63%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
           P +RA++ C V A P AKV+W+     +    R+  +     + L++R++ ++D+G+Y+C
Sbjct: 229 PGIRAQLNCIVTAWPEAKVDWYFRNETLKYTSRVVKYSIGNDYRLMIRNVNESDYGSYLC 288

Query: 67  QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123
           +ASN+LG +++ I+LSGI N  +F+K SR      Y  +W+VD+Y  II+Y   FR+
Sbjct: 289 RASNSLGFTEKIIELSGIANQAIFKKESRSTSSTSYNFIWEVDSYYPIIEYQFWFRK 345

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004453|gb|EFA00901.1| hypothetical protein TcasGA2_TC003806 [Tribolium castaneum]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 2/120 (1%)

Query: 5   TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
           TAP  R ++ C + A+P A V W +    + L  R+   V  +K++LL+++++ +DFG Y
Sbjct: 192 TAPGHRVQLECKISADPQATVTWTKGDMPVPLDSRVLSLVDGDKYTLLIKNVQKSDFGIY 251

Query: 65  MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRR--LGPDGYRLVWQVDTYSAIIQYLLKFR 122
            C+A N LG  +  IQLSG+PN  VF+K+  +     D Y L+W+VD+Y+ II+Y L F+
Sbjct: 252 TCKAINELGQGELQIQLSGVPNPGVFKKTDDKNINSKDSYTLIWEVDSYTPIIEYNLWFQ 311

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235691|ref|XP_966538.2| PREDICTED: similar to lachesin, putative [Tribolium castaneum]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 2/120 (1%)

Query: 5   TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
           TAP  R ++ C + A+P A V W +    + L  R+   V  +K++LL+++++ +DFG Y
Sbjct: 230 TAPGHRVQLECKISADPQATVTWTKGDMPVPLDSRVLSLVDGDKYTLLIKNVQKSDFGIY 289

Query: 65  MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRR--LGPDGYRLVWQVDTYSAIIQYLLKFR 122
            C+A N LG  +  IQLSG+PN  VF+K+  +     D Y L+W+VD+Y+ II+Y L F+
Sbjct: 290 TCKAINELGQGELQIQLSGVPNPGVFKKTDDKNINSKDSYTLIWEVDSYTPIIEYNLWFQ 349

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             A+++C V++ PPA V W+RD   +    R  M V   +H+L++R ++ +DFGNY C A
Sbjct: 237 FEAQLVCIVHSEPPADVLWYRDTLRLDTTERRSMEVRGSRHTLIIRKVQASDFGNYSCVA 296

Query: 69  SNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE 123
            N LG  +Q++QLSG PN  VF+        D Y + W V++Y+ I ++ L FR+
Sbjct: 297 DNPLGKMRQYLQLSGKPNQVVFRSEPMGRYKDSYNITWAVNSYTPIEEFKLYFRK 351

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016346|gb|EGI57259.1| Hemicentin-1 [Acromyrmex echinatior]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 67/116 (57%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
           P +R  + C V A P AKVEW+ +   I    RI  + +   +SLL++++   D G+Y C
Sbjct: 105 PGIRITLDCTVSAWPEAKVEWYFNNKTINYTSRIVKYSTENNYSLLIKYVMSNDSGSYTC 164

Query: 67  QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFR 122
           +ASN++G +++ I+LS I N  VFQK S       Y  +W  D+YS IIQY   FR
Sbjct: 165 RASNSMGITEKIIELSQIANPAVFQKESCSASSTSYNFIWFADSYSPIIQYQFWFR 220

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.888	0.205	0.366	9.8e-18
FB|FBgn0025878	500	wrapper "wrapper" [Drosophila	0.904	0.228	0.299	7.4e-12
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.880	0.237	0.279	1.8e-11
UNIPROTKB|Q15772	3267	SPEG "Striated muscle preferen	0.571	0.022	0.375	6.8e-09
RGD|1303131	837	Ncam2 "neural cell adhesion mo	0.603	0.090	0.35	1.7e-08
UNIPROTKB|F1LPH9	709	Ncam2 "Protein Ncam2" [Rattus	0.603	0.107	0.337	2.9e-08
UNIPROTKB|G3N022	3281	SPEG "Uncharacterized protein"	0.595	0.022	0.346	3.8e-08
UNIPROTKB|F1M8G9	836	Ncam2 "Protein Ncam2" [Rattus	0.603	0.090	0.337	4.4e-08
MGI|MGI:97282	837	Ncam2 "neural cell adhesion mo	0.603	0.090	0.337	5.6e-08
UNIPROTKB|H9KV31	695	NCAM2 "Neural cell adhesion mo	0.603	0.109	0.337	5.7e-08

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 9.8e-18, P = 9.8e-18
 Identities = 41/112 (36%), Positives = 65/112 (58%)

Query:    11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             A+++C V+A+P A V W+++   I    R  M   + +H L +RHI+  DFGNY C A N
Sbjct:   305 AKLVCIVFADPVATVSWYQNSFPIQSTDRRIMATRANRHMLTIRHIQQEDFGNYSCVADN 364

Query:    71 NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFR 122
             +LG S+++++LSG P    F        PD Y L W++D+Y  + +  L +R
Sbjct:   365 SLGRSRKYMELSGRPGAAEFYSPKWGRSPDSYNLTWKIDSYPPLEEVRLLYR 416

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0025878 wrapper "wrapper" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 7.4e-12, P = 7.4e-12
 Identities = 38/127 (29%), Positives = 66/127 (51%)

Query:    10 RAEIICNVYANPPAKVEWFRDGTAITLGGR-------------IDMHVSSEKHSLLVRHI 56
             RA + C V A P A V+WF  G  + LG               +D +V++ +H L+V+ +
Sbjct:   238 RAHLECIVEAAPAATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSV 297

Query:    57 KDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQ 116
             ++ D G Y C+ASN +      ++L+G P   +F+ +        + LVWQ ++   I++
Sbjct:   298 RNADMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSSTSHVLVWQTESLLPIME 357

Query:   117 YLLKFRE 123
             + LKFR+
Sbjct:   358 FKLKFRQ 364

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0042063 "gliogenesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IEP

GO:0007409 "axonogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 31/111 (27%), Positives = 63/111 (56%)

Query:    12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
             E++C V+ +  +++ W+++   +    R  M+   +++SL++R+ + TDFGNY C A N 
Sbjct:   243 ELVCIVHGDVNSEMLWYQNSFLLDATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVADNA 302

Query:    72 LGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFR 122
             LG ++++I++SG P    F   +     D Y L W +++   + +  L +R
Sbjct:   303 LGRTKKYIEVSGRPGPADFISPALSGFLDHYNLTWTIESIPPLDEIKLLYR 353

GO:0005576 "extracellular region" evidence=ISS

UNIPROTKB|Q15772 SPEG "Striated muscle preferentially expressed protein kinase" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query:     4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
             + AP     + C + ANPP +V W +DG+A+   GR+ +    E+H+LL+R  +  D G+
Sbjct:   732 VVAPGADVLLKCIITANPPPQVSWHKDGSALRSEGRLLLRAEGERHTLLLREARAADAGS 791

Query:    64 YMCQASNNLGSS 75
             YM  A+N LG +
Sbjct:   792 YMATATNELGQA 803

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007517 "muscle organ development" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

RGD|1303131 Ncam2 "neural cell adhesion molecule 2" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query:    13 IICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C+V ANPPA + W R+   +       +  H    K  L +    D DFG Y C A+N
Sbjct:   420 ISCDVKANPPASIHWRREKLVLPAENTTHLKTHSVGRKMILEIARTSDNDFGRYNCTATN 479

Query:    71 NLGSS-QQFI-QLSGIPNIP 88
              LG+  Q++I +L+ +P+ P
Sbjct:   480 RLGTRFQEYILELADVPSSP 499

GO:0007413 "axonal fasciculation" evidence=IEP

GO:0007608 "sensory perception of smell" evidence=IEP

GO:0030424 "axon" evidence=ISO

UNIPROTKB|F1LPH9 Ncam2 "Protein Ncam2" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query:    13 IICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C+V ANPPA + W R+   +       +  H    K  L +    D DFG Y C A+N
Sbjct:   402 ISCDVKANPPASIHWRREKLVLPAKNTTHLKTHSVGRKMILEIAPTSDNDFGRYNCTATN 461

Query:    71 NLGSS-QQFI-QLSGIPNIP 88
              +G+  Q++I +L+ +P+ P
Sbjct:   462 RIGTRFQEYILELADVPSSP 481

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|G3N022 SPEG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 26/75 (34%), Positives = 45/75 (60%)

Query:     2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
             +++ AP +   + C V ANPP +V W +DG+ +   GR+ +    E+H+LL+R  +  D 
Sbjct:   731 NAVVAPGVDVLLKCIVTANPPPQVSWQKDGSPLRSDGRLLIRAEGERHTLLLREARAADA 790

Query:    62 GNYMCQASNNLGSSQ 76
             G+Y   A+N LG ++
Sbjct:   791 GSYAATATNELGQAR 805

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|F1M8G9 Ncam2 "Protein Ncam2" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query:    13 IICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C+V ANPPA + W R+   +       +  H    K  L +    D DFG Y C A+N
Sbjct:   419 ISCDVKANPPASIHWRREKLVLPAKNTTHLKTHSVGRKMILEIAPTSDNDFGRYNCTATN 478

Query:    71 NLGSS-QQFI-QLSGIPNIP 88
              +G+  Q++I +L+ +P+ P
Sbjct:   479 RIGTRFQEYILELADVPSSP 498

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

MGI|MGI:97282 Ncam2 "neural cell adhesion molecule 2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query:    13 IICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C+V ANPPA + W R+   +       +  H    K  L +    D DFG Y C A+N
Sbjct:   420 ISCDVTANPPASIHWRREKLLLPAKNTTHLKTHSVGRKMILEIAPTSDNDFGRYNCTATN 479

Query:    71 NLGSS-QQFI-QLSGIPNIP 88
              +G+  Q++I +L+ +P+ P
Sbjct:   480 RIGTRFQEYILELADVPSSP 499

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|H9KV31 NCAM2 "Neural cell adhesion molecule 2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query:    13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN 70
             I C+V +NPPA + W RD   +      ++   S   K  L +    D DFG Y C A+N
Sbjct:   278 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 337

Query:    71 NLGSS-QQFI-QLSGIPNIP 88
             ++G+  Q++I  L+ +P+ P
Sbjct:   338 HIGTRFQEYILALADVPSSP 357

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-12
smart00409	85	smart00409, IG, Immunoglobulin	2e-12
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	6e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-11
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	8e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-08
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	7e-08
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	1e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-06
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	6e-06
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	1e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	1e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	3e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	1e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	2e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	2e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	2e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	4e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	7e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	8e-04
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	8e-04
cd05871	91	cd05871, Ig_Semaphorin_classIII, Immunoglobulin (I	0.001
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	0.001
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	0.003
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.004
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.004
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             + C    +PP +V W++ G   +   GR  +  S    +L + ++   D G Y C A
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAA 70

Query: 69 SNNLGSSQQFIQLS 82
          +N+ GS+     L+
Sbjct: 71 TNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             + C    +PP +V W++ G   +   GR  +  S    +L + ++   D G Y C A
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAA 70

Query: 69 SNNLGSSQQFIQLS 82
          +N+ GS+     L+
Sbjct: 71 TNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 56.9 bits (138), Expect = 6e-12
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C V  +P   V WF+DG  +    R  +      ++L + +++  D G Y C A+N+ G 
Sbjct: 22 CTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGE 81

Query: 75 SQQFIQL 81
          ++   +L
Sbjct: 82 AEASAEL 88

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 53.6 bits (128), Expect = 9e-11
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
            + C     PP  + W ++G  +        R     SS   +L + ++   D G Y C
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 67 QASNNLGSSQQFIQ 80
           ASN+ G+    + 
Sbjct: 61 VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 48.9 bits (117), Expect = 8e-09
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 73
          C    NP   + W +DG       RI  +   +K  +L++  +  +D G Y C   N  G
Sbjct: 16 CPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG 75

Query: 74 S 74
          S
Sbjct: 76 S 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.9 bits (109), Expect = 7e-08
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            + C    NP   + W +DG  +    R     S    +L ++ +   D G Y C A N
Sbjct: 5  VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS----TLTIKSVSLEDSGLYTCVAEN 60

Query: 71 NLG 73
          + G
Sbjct: 61 SAG 63

Length = 63

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 45.9 bits (109), Expect = 7e-08
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           E  C V  +P   V W ++   +  G R ++    +  SL +R++   D G+Y C+A N
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 71 NLGSS 75
           +G  
Sbjct: 57 MVGKI 61

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 8  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
               I C   A P   + W +    +T   RI +       SL + ++  +D G Y C 
Sbjct: 1  GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI---WPDGSLEILNVTKSDEGKYTCF 57

Query: 68 ASNNLGSS 75
          A N  G +
Sbjct: 58 AENFFGKA 65

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL---VRHIKD--TDFGNYMCQAS 69
          C+    PP K+EW +DG  + L    +        SLL   V H K    D G Y C A 
Sbjct: 21 CSAEGEPPPKIEWKKDGVLLNLVSD-ERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ 79

Query: 70 N-NLGS 74
          N +LGS
Sbjct: 80 NDSLGS 85

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF---GNYMC 66
             + C+V   P   V WF++G  +     +    +      L   I +      G Y C
Sbjct: 3  SVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITL--TISNVTPEDSGTYTC 60

Query: 67 QA 68
            
Sbjct: 61 VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80
          P   V W +DG  + L GR+ +  ++   SL++++ + +D G Y     N  G     I 
Sbjct: 12 PTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71

Query: 81 L 81
          +
Sbjct: 72 V 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 73
          C    NP   + W ++G       RI  +    +H SL++  +  +D GNY C   N  G
Sbjct: 16 CPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 75

Query: 74 SSQQFIQL 81
          S      L
Sbjct: 76 SINHTYHL 83

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 15 CNVYANPPAKVEW-FRDGTA-------ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
          C+    PP  + W    G           L GRI +  +    SLL++H+ + D G Y+C
Sbjct: 5  CSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLC 61

Query: 67 QASNNLGSSQQ 77
          + SN++G+   
Sbjct: 62 KVSNDVGADAS 72

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
          +I C+   +P   + W +DG  +T  G+   H+S E + L +R +   D G Y C A N 
Sbjct: 2  QIPCSAQGDPEPTITWNKDGVQVTESGK--FHISPEGY-LAIRDVGVADQGRYECVARNT 58

Query: 72 LGSSQQFIQLS 82
          +G +   + LS
Sbjct: 59 IGYASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C++  +P    +WFRDGT ++  G+ +  VSS++ +L +R     D G Y C A N  GS
Sbjct: 5  CHIDGHPRPTYQWFRDGTPLS-DGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGS 63

Query: 75 --SQQFIQLS 82
            S Q   LS
Sbjct: 64 VCSSQNFTLS 73

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
          A ++C    NP  ++ WF+D   +  T  GRI    S    +L + + +++D G Y C A
Sbjct: 1  ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVA 57

Query: 69 SNNLGS 74
          +N+ G+
Sbjct: 58 TNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAI-----TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
          +  + C    +P  ++ W R          +L GRI +   +   SL ++ ++ TD G Y
Sbjct: 18 QITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77

Query: 65 MCQASNNLGSSQQ 77
           C+ASN +G  QQ
Sbjct: 78 DCEASNRIGGDQQ 90

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
          + C+   NPP    W++DG  ++                   ++   D G Y C ASN  
Sbjct: 19 LTCSAPGNPPPNYTWYKDGVPLSSSQNG----------FFTPNVSAEDSGTYTCVASNGG 68

Query: 73 GSSQ 76
          G   
Sbjct: 69 GGKT 72

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 10 RAEIICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFG 62
           A + C     P  ++ W R  DG   + G     GRI++     + SL ++ +K +D G
Sbjct: 18 AATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77

Query: 63 NYMCQASNNLGSSQQFIQL 81
           Y C+A++ +G  Q+ + L
Sbjct: 78 RYDCEAASRIGGHQKSMYL 96

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 14/70 (20%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR----HIKDTDF---GN 63
          A + C+    P  ++ W ++G  IT          S++ +L+      HI +  +   G 
Sbjct: 1  ASLRCHAEGIPLPRLTWLKNGMDIT-------PKLSKQLTLIANGSELHISNVRYEDTGA 53

Query: 64 YMCQASNNLG 73
          Y C A N  G
Sbjct: 54 YTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL----LVRH--IKDTDFGNYMCQA 68
          C    +PP    W  +GT I             ++SL    LV     K  D G Y C A
Sbjct: 26 CRARGSPPPTYRWLMNGTEIDDE-------PDSRYSLVGGNLVISNPSKAKDAGRYQCLA 78

Query: 69 SNNLGS 74
          SN +G+
Sbjct: 79 SNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 5  TAPDMRAEII--CNVYANPPAKVEWFRDGT------AITLGGRIDMHVSSEKHSLLVRHI 56
          TA ++  +I   C    +P   + W R  T        TL G I +   +   SL +++I
Sbjct: 12 TAMELEEQITLTCEASGDPIPSITW-RTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYI 70

Query: 57 KDTDFGNYMCQASNNLGSSQQFIQL 81
          + TD G Y+C ASN +G   Q + L
Sbjct: 71 QYTDAGEYLCTASNTIGQDSQSMYL 95

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 20 NPPAKVEWFRDGTAITLGGRIDMHV--SSEKHS-LLVRHIKDTDFGNYMCQASNNLG 73
           P  + +WF+DG  +    +       + +K+S L +   K  D G Y C   N LG
Sbjct: 11 YPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG 67

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C V   P   V+W ++G  +      D     ++H+L V  +  +D G Y C A N++G+
Sbjct: 6  CEVTGKPTPTVKWVKNGDMVIPS---DYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN 62

Query: 75 SQQFIQL 81
           Q   QL
Sbjct: 63 VQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C     P   + W + G+ +++  R   H+     +L +  +   D G Y CQA N +GS
Sbjct: 9  CEAQGYPQPVIAWTKGGSQLSVDRR---HLVLSSGTLRISRVALHDQGQYECQAVNIVGS 65

Query: 75 SQQFIQLS 82
           +   QL+
Sbjct: 66 QRTVAQLT 73

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 73
          C V+ +P  +V W ++  A+ L    ++ V   K+ SL ++ +   D G Y     N  G
Sbjct: 23 CTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82

Query: 74 S 74
           
Sbjct: 83 G 83

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 11 AEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
          A + C    +P  ++ W +DG T         MHV  E     +  +K  D G Y C A 
Sbjct: 1  ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ 60

Query: 70 NNLGS 74
          N  GS
Sbjct: 61 NTAGS 65

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain of class III semaphorin

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 21 PPAKVEWF--RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
          P A V+W   R G       + +  +   +  LL+R ++ +D G Y C A  +
Sbjct: 23 PQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEH 75

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascular endothelial growth factor receptor (VEGF)-induced angiogenesis and induces microvascular permeability. This group also includes Sema3B, -C, -D, -E, -G. Length = 91

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 17 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
          V A PP +++W+++G  I+             HSL ++ + + D GNY    +N     +
Sbjct: 7  VKAYPPPEIQWYKNGKLISEKN----RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE 62

Query: 77 QFIQLS 82
          + +  +
Sbjct: 63 KRLTFT 68

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 12 EIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           + C+    P P  + W+R+G+     G +     S   +L +  +   D G Y C ASN
Sbjct: 19 TLTCSAEGGPPPPTISWYRNGSISGGSGGL----GSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQASNNLG 73
          C    NP     W R+GT I      D   S    +L++ +  +  D G Y C A+N++G
Sbjct: 26 CEARGNPVPTYRWLRNGTEIDT--ESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIG 83

Query: 74 S 74
          S
Sbjct: 84 S 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 6  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNY 64
          +P+ +  + C   A+PPA   W  +GT I      +   +    +L++ +  K  D G+Y
Sbjct: 17 SPEEKVTLGCRARASPPATYRWKMNGTEIKFAP--ESRYTLVAGNLVINNPQKARDAGSY 74

Query: 65 MCQASNNLGS 74
           C A N  G+
Sbjct: 75 QCLAINRCGT 84

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNN 71
          + C V+ NP  +V WF++   I L     + +   K+ SL ++ +   D G Y     N 
Sbjct: 21 LTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNK 80

Query: 72 LG 73
           G
Sbjct: 81 YG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKD----TDF-GNYMC 66
          I C    NPP    W R+GT        D  V+ +  S  LV    +     D+ G Y C
Sbjct: 3  IKCEAKGNPPPTFSWTRNGTHFDPEK--DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60

Query: 67 QASNNLGS 74
           ASN LG+
Sbjct: 61 YASNELGT 68

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.85
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.83
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.82
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.82
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.82
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.81
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.8
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.8
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.8
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.79
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.79
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.79
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.79
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.78
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.77
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.76
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.76
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.76
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.76
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.76
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.76
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.76
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.76
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.75
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.75
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.75
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.75
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.74
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.74
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.74
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.74
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.74
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.73
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.73
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.72
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.72
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.72
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.71
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.71
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.7
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.7
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.7
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.7
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.69
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.69
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.69
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.69
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.69
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.69
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.68
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.68
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.68
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.68
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.67
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.67
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.67
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.66
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.65
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.65
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.65
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.65
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.65
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.65
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.64
KOG3513|consensus	1051		99.64
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.64
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.63
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.62
KOG3513|consensus	1051		99.61
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.6
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.6
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.6
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.6
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.59
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.59
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.58
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.57
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.56
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.56
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.56
KOG4194|consensus	873		99.56
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.54
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.54
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.54
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.53
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.51
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.5
KOG4221|consensus	1381		99.48
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.48
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.47
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.46
smart00409	86	IG Immunoglobulin.	99.44
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.44
PHA02826	227	IL-1 receptor-like protein; Provisional	99.43
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.42
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.41
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.4
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.4
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.4
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.39
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.39
PHA02785	326	IL-beta-binding protein; Provisional	99.37
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.35
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.34
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.33
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.33
PHA02826	227	IL-1 receptor-like protein; Provisional	99.32
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.28
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.26
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.25
PHA02785	326	IL-beta-binding protein; Provisional	99.2
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.18
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.13
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.12
KOG4221|consensus	1381		99.08
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.08
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	99.06
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.06
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.06
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.04
KOG4222|consensus	1281		99.03
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.03
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.0
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.98
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.97
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.97
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.96
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.95
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.95
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.94
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.94
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.92
PHA03376	221	BARF1; Provisional	98.92
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.9
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.89
KOG4222|consensus	1281		98.87
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.83
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.81
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.79
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.78
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.77
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.75
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.74
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.73
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.73
KOG4194|consensus	873		98.72
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.72
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.69
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.66
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.64
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.63
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.63
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.62
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.61
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.58
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.56
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.55
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.51
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.49
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.46
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.45
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.37
smart00406	81	IGv Immunoglobulin V-Type.	98.36
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.35
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.27
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.26
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.24
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.24
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.13
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.12
smart00407	75	IGc1 Immunoglobulin C-Type.	98.08
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.0
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.0
KOG3515|consensus	741		97.99
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.9
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.81
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.75
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.68
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.65
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.61
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.53
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.47
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.45
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.45
PHA02633	63	hypothetical protein; Provisional	97.43
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.41
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.35
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.34
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.26
PHA02982	251	hypothetical protein; Provisional	97.1
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.89
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.89
PHA03042	286	CD47-like protein; Provisional	96.83
KOG4597|consensus	560		96.66
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.64
KOG1480|consensus	909		96.58
PHA03269	566	envelope glycoprotein C; Provisional	96.42
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.42
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.94
KOG3515|consensus	741		95.74
PHA03270	466	envelope glycoprotein C; Provisional	95.25
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.13
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.09
PHA03273	486	envelope glycoprotein C; Provisional	94.99
PHA02865	338	MHC-like TNF binding protein; Provisional	94.16
PHA03271	490	envelope glycoprotein C; Provisional	93.95
PHA03052	69	Hypothetical protein; Provisional	93.22
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	91.86
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	91.79
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.29
PHA02914	500	Immunoglobulin-like domain protein; Provisional	86.8
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	85.14
PHA03112	141	IL-18 binding protein; Provisional	80.69
PHA03269	566	envelope glycoprotein C; Provisional	80.52

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.85  E-value=7.7e-20  Score=95.31  Aligned_cols=84  Identities=20%  Similarity=0.364  Sum_probs=74.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+.+.|.|.+.|.|.+++.|+|++..+....++........+.|.|.++.+.|.|.|+|.+.|..|...+.+.|
T Consensus         9 ~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l   88 (98)
T cd05762           9 DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL   88 (98)
T ss_pred             CEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence            46788999999999999999999999999999877777766655556789999999999999999999999999999888


Q ss_pred             EecC
Q psy12132         82 SGIP   85 (126)
Q Consensus        82 ~~~~   85 (126)
                      .|..
T Consensus        89 ~V~~   92 (98)
T cd05762          89 TVVD   92 (98)
T ss_pred             EEec
Confidence            8753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.83  E-value=8.1e-19  Score=89.42  Aligned_cols=82  Identities=17%  Similarity=0.309  Sum_probs=70.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++..........|.|.++.+.|+|.|+|.+.|..|...+.+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            467889999999999999999999999999888653 4565555445578999999999999999999999999988887


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.82  E-value=1e-18  Score=90.26  Aligned_cols=81  Identities=20%  Similarity=0.429  Sum_probs=69.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|+|.|+|.+.|..|.....+.+
T Consensus        11 v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05737          11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV   90 (92)
T ss_pred             EEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence            5678999999999999999999999999988876666655433 334689999999999999999999999988888776


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        91 ~v   92 (92)
T cd05737          91 SV   92 (92)
T ss_pred             eC
Confidence            53

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.82  E-value=3.8e-19  Score=88.34  Aligned_cols=74  Identities=24%  Similarity=0.475  Sum_probs=63.1

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +|+++.|.|.+.|.|.|.+.|++++..+....+......+   .|.|.++...|.|.|+|.+.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5899999999999999999999999887655554443333   8999999999999999999999999888877753

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.82  E-value=5e-19  Score=87.47  Aligned_cols=73  Identities=30%  Similarity=0.399  Sum_probs=63.8

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |+++.|.|.+.|.|.|.+.|+|++..+....++.+..++   .|.|.+++..|.|.|+|.+.|..|.......|.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            678999999999999999999999877666777665554   7999999999999999999999999888877753

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.81  E-value=4e-18  Score=88.05  Aligned_cols=80  Identities=23%  Similarity=0.414  Sum_probs=69.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.+.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus        12 ~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          12 SLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             cEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            46788999999999999999999999999988776666666554445689999999999999999999999988887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.80  E-value=4.1e-18  Score=89.03  Aligned_cols=82  Identities=20%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEecC-----CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      .+.+.+|+++.|.|.+.| .|.|.+.|+|+|..+............     ....|.|.++...|.|.|+|.+.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            467788999999999999 899999999999988754433222211     13589999999999999999999999998


Q ss_pred             EEEEEEEe
Q psy12132         76 QQFIQLSG   83 (126)
Q Consensus        76 ~~~~~l~~   83 (126)
                      ...+.|.|
T Consensus        92 ~~t~~L~V   99 (101)
T cd04975          92 SLTFELYV   99 (101)
T ss_pred             EEEEEEEE
Confidence            88888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.80  E-value=9.1e-18  Score=83.39  Aligned_cols=74  Identities=22%  Similarity=0.483  Sum_probs=63.9

Q ss_pred             cEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        10 ~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      .+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|...+.+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            37899999999999999999999886666666655555678999999999999999999999999888887753

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.80  E-value=8.6e-18  Score=86.48  Aligned_cols=82  Identities=26%  Similarity=0.541  Sum_probs=74.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....++..........|.|.++...|.|.|+|.+.+..|...+.+.|
T Consensus         9 ~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l   88 (90)
T PF07679_consen    9 DVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL   88 (90)
T ss_dssp             EEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            56788999999999999999999999999999988888888777778899999999999999999999999988888877


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        89 ~V   90 (90)
T PF07679_consen   89 TV   90 (90)
T ss_dssp             EE
T ss_pred             EC
Confidence            64

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.79  E-value=7.8e-18  Score=82.93  Aligned_cols=71  Identities=25%  Similarity=0.427  Sum_probs=60.4

Q ss_pred             cEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        10 ~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      ++.|.|.+.|.|.|.+.|++++..+....++.....+   .+.|.++...|.|.|+|.+.|..|...+...|.+
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999887666666655444   5888899999999999999999999988887753

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.79  E-value=2.1e-17  Score=85.00  Aligned_cols=81  Identities=20%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|.|.+.|..|...+.+.|
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L   88 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV   88 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence            34578899999999999999999999999987754433322222334589999999999999999999999998888776


Q ss_pred             E
Q psy12132         82 S   82 (126)
Q Consensus        82 ~   82 (126)
                      .
T Consensus        89 ~   89 (90)
T cd04972          89 T   89 (90)
T ss_pred             e
Confidence            5

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.79  E-value=6.7e-18  Score=83.63  Aligned_cols=73  Identities=26%  Similarity=0.379  Sum_probs=63.3

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |+++.|.|.+.+.|.|.+.|++++..+....++.....+   .|.|.++...|.|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999887766666655444   7999999999999999999999999888887753

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.79  E-value=8.7e-18  Score=83.33  Aligned_cols=73  Identities=25%  Similarity=0.486  Sum_probs=60.7

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|+|++..+.. ..++.+.... +..+|.|.++...|.|.|+|.+.|..|...+...|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47899999999999999999988764 3566654432 3358999999999999999999999999988877753

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.78  E-value=5.6e-18  Score=86.74  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=64.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++..  .  ...|.|.++...|.|.|+|.+.|..|...+...|
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   85 (88)
T cd05851          10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--S--GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV   85 (88)
T ss_pred             cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--C--CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence            46678999999999999999999999998876654433322  1  2379999999999999999999999998888877


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        86 ~V   87 (88)
T cd05851          86 YV   87 (88)
T ss_pred             EE
Confidence            65

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.77  E-value=3e-17  Score=83.55  Aligned_cols=78  Identities=21%  Similarity=0.401  Sum_probs=66.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+....++... ++   .|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~-~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE-AG---DLRITKLSLSDSGMYQCVAENKHGTIYASAEL   83 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe-CC---EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence            456788999999999999999999999999888665555432 22   79999999999999999999999988888777


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus        84 ~V   85 (85)
T cd05728          84 AV   85 (85)
T ss_pred             EC
Confidence            53

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.76  E-value=6.6e-17  Score=83.41  Aligned_cols=82  Identities=21%  Similarity=0.422  Sum_probs=68.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+.+.+|+++.|.|.+.+.|.|.+.|++++..+....++.... .+....|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT   89 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence            4678899999999999999999999999998876655554432 222357999999999999999999999999988887


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      +.+
T Consensus        90 v~~   92 (92)
T cd05891          90 VSV   92 (92)
T ss_pred             EEC
Confidence            763

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.76  E-value=4.2e-17  Score=80.93  Aligned_cols=73  Identities=23%  Similarity=0.393  Sum_probs=59.9

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|+|++..+... .++.+.... +...|.|.++...|.|.|+|.+.|..|...+...|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            478999999999999999999887643 455554433 3347999999999999999999999999988877753

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.76  E-value=3.9e-17  Score=85.45  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=65.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec------CCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS------SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+..|+.+.|.|.+.|.|.|++.|+|++.++....+......      .....|.|.++...|.|.|+|.+.|..|...
T Consensus        13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~   92 (101)
T cd05859          13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS   92 (101)
T ss_pred             EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence            4567789999999999999999999999998875543222111      1124899999999999999999999999998


Q ss_pred             EEEEEEe
Q psy12132         77 QFIQLSG   83 (126)
Q Consensus        77 ~~~~l~~   83 (126)
                      .++.|.+
T Consensus        93 ~t~~l~V   99 (101)
T cd05859          93 YTFALQI   99 (101)
T ss_pred             EEEEEEE
Confidence            8887775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.76  E-value=8.6e-17  Score=82.31  Aligned_cols=78  Identities=22%  Similarity=0.350  Sum_probs=64.3

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEe--cC--CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHV--SS--EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~--~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++.+..  .+  ....|.|.++...|.|.|+|.+.|..|...+.+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            788999999999999999999999877543 3554432  11  235799999999999999999999999999999888


Q ss_pred             ecC
Q psy12132         83 GIP   85 (126)
Q Consensus        83 ~~~   85 (126)
                      +..
T Consensus        81 V~~   83 (88)
T cd05735          81 VQE   83 (88)
T ss_pred             EeC
Confidence            754

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.76  E-value=6e-17  Score=84.15  Aligned_cols=80  Identities=19%  Similarity=0.400  Sum_probs=66.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+++.|.|.+.|.|.|.+.|++++..+... .++.....  ...|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus        13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L   90 (95)
T cd05730          13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNED--GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL   90 (95)
T ss_pred             eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCC--CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            45778999999999999999999999999887654 34433322  2479999999999999999999999998888888


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus        91 ~V~   93 (95)
T cd05730          91 KVF   93 (95)
T ss_pred             EEE
Confidence            764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.76  E-value=4.9e-17  Score=81.51  Aligned_cols=72  Identities=21%  Similarity=0.381  Sum_probs=60.6

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      |+++.|.|.+.|.|.|.+.|++++..+....++..........|.|.++...|.|.|+|.+.|..|......
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            678999999999999999999998777665666655555556899999999999999999999988775543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.76  E-value=7.1e-17  Score=80.26  Aligned_cols=73  Identities=25%  Similarity=0.428  Sum_probs=59.9

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|+|++..+... .++.+.... ....|.|.+++..|.|.|+|.+.|..|...+...|.+
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            468999999999999999999887643 455554432 3347999999999999999999999999888877653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.76  E-value=1.3e-16  Score=82.07  Aligned_cols=80  Identities=19%  Similarity=0.395  Sum_probs=65.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~   79 (126)
                      ++.+..|+++.|.|.+.|.|. .+.|++ ++..+....++.....+....|.|.++...|.|.|+|.+.|..|.. .+.+
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i   87 (92)
T cd05866           9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV   87 (92)
T ss_pred             ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence            567889999999999999987 899998 5666666667776666656789999999999999999999998875 4555


Q ss_pred             EEE
Q psy12132         80 QLS   82 (126)
Q Consensus        80 ~l~   82 (126)
                      .|.
T Consensus        88 ~l~   90 (92)
T cd05866          88 VLE   90 (92)
T ss_pred             EEE
Confidence            554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.75  E-value=2.2e-17  Score=80.87  Aligned_cols=68  Identities=26%  Similarity=0.573  Sum_probs=58.2

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.|.|.+.|.|.|.+.|++++..+....++.+...+   .|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            478999999999999999999887766666554443   89999999999999999999999988877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.75  E-value=1.2e-16  Score=79.65  Aligned_cols=72  Identities=22%  Similarity=0.369  Sum_probs=59.8

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |+++.|.|.+.|.|.|.+.|++++..+....   ++. ...   ..|.|.+++..|.|.|+|.+.|..|...+.+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSS---GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeC---CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999999999999998775432   222 222   37999999999999999999999999888877765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.75  E-value=1.4e-16  Score=81.14  Aligned_cols=81  Identities=23%  Similarity=0.474  Sum_probs=64.9

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+.+.|.|.+.|.|.|.+.|++++..+....+.. .........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            457789999999999999999999999998876543321 1111223478999999999999999999999999888877


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            53

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.75  E-value=1.2e-16  Score=83.38  Aligned_cols=81  Identities=26%  Similarity=0.520  Sum_probs=63.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEEecc-----CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTAITL-----GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++.  +..+..     ..++..........|.|.++...|.|.|+|.+.|..|.
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   89 (98)
T cd05870          10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG   89 (98)
T ss_pred             cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence            56788999999999999999999999994  433321     23454443334468999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy12132         75 SQQFIQLS   82 (126)
Q Consensus        75 ~~~~~~l~   82 (126)
                      ....+.|.
T Consensus        90 ~~~~~~l~   97 (98)
T cd05870          90 HQKSMYLD   97 (98)
T ss_pred             ceeEEEEe
Confidence            88777664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.74  E-value=1.4e-16  Score=82.57  Aligned_cols=81  Identities=21%  Similarity=0.353  Sum_probs=63.7

Q ss_pred             eeccCCccEEEEEEeeecCC-CeeEEEE-CCEEecc-CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCC-ceeEE
Q psy12132          3 SITAPDMRAEIICNVYANPP-AKVEWFR-DGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNL-GSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~   77 (126)
                      ..+..|+++.|.|.+.|.|. |.+.|++ ++..+.. ..++..... .....|.|.+++..|.|.|+|.+.|.. |...+
T Consensus        10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~   89 (96)
T cd05865          10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA   89 (96)
T ss_pred             cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence            45778999999999999985 7999998 6765544 335444322 224689999999999999999999986 88888


Q ss_pred             EEEEEe
Q psy12132         78 FIQLSG   83 (126)
Q Consensus        78 ~~~l~~   83 (126)
                      .+.|.+
T Consensus        90 s~~l~v   95 (96)
T cd05865          90 TVNVKI   95 (96)
T ss_pred             EEEEEE
Confidence            887764

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.74  E-value=1.4e-16  Score=81.63  Aligned_cols=78  Identities=18%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+....... ..   ...|.|.+++..|+|.|.|.+.|..|...+...|
T Consensus        10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   85 (88)
T cd04968          10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MS---GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI   85 (88)
T ss_pred             ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-Ee---CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence            4567889999999999999999999999876554333322 22   2389999999999999999999999988887777


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus        86 ~V   87 (88)
T cd04968          86 YV   87 (88)
T ss_pred             EE
Confidence            64

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.74  E-value=1.6e-16  Score=82.66  Aligned_cols=81  Identities=27%  Similarity=0.484  Sum_probs=64.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +..+.+|+++.|.|.+.+.|.|.+.|++++..+...     .++..........|.|.+++..|.|.|+|.+.|..|...
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            456788999999999999999999999987555422     233333333446899999999999999999999999888


Q ss_pred             EEEEEE
Q psy12132         77 QFIQLS   82 (126)
Q Consensus        77 ~~~~l~   82 (126)
                      ..+.|.
T Consensus        90 ~s~~l~   95 (96)
T cd05732          90 QSMYLE   95 (96)
T ss_pred             EEEEEe
Confidence            877765

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.74  E-value=1.7e-16  Score=79.11  Aligned_cols=74  Identities=19%  Similarity=0.430  Sum_probs=59.6

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCc-EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGR-IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |+++.|.|.+.|.|.|.+.|++++..+..... .....++  ..|.+.+++..|.|.|+|.+.|..|...+.+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            67899999999999999999999988753221 1111222  27889999999999999999999999998888765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.74  E-value=9.7e-17  Score=80.06  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=60.4

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |+++.|.|.+.|.|.|.+.|++++..+....... ........|.|.+++..|.|.|+|.+.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            6889999999999999999999998776443221 11112248999999999999999999999999888887765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.73  E-value=1.1e-16  Score=78.83  Aligned_cols=70  Identities=20%  Similarity=0.389  Sum_probs=56.1

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|++++..+.... ....  .....|.|.+++..|.|.|+|.+.|..|...+.+.|.+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4689999999999999999887654332 2221  12348999999999999999999999999888887764

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.73  E-value=1e-16  Score=77.62  Aligned_cols=65  Identities=25%  Similarity=0.463  Sum_probs=53.8

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|+|+|..+....        ....|.|.++...|.|.|+|.+.|..|...+.+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            4689999999999999999998875221        2237999999999999999999999997766666553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.72  E-value=3.4e-16  Score=77.70  Aligned_cols=73  Identities=25%  Similarity=0.431  Sum_probs=59.4

Q ss_pred             CccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+......+   .|.|..+...|.|.|+|.+.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 56665544444444443   7999999999999999999999998888777653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.72  E-value=5.4e-16  Score=80.82  Aligned_cols=78  Identities=26%  Similarity=0.468  Sum_probs=61.9

Q ss_pred             cCCccEEEEEEeeecCCCeeEEEECCEEeccC-----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          6 APDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ..|+.+.|.|.+.|.|.|.+.|++++..+...     .++..........|.|.+++..|.|.|+|.+.|..|...+.+.
T Consensus        15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   94 (97)
T cd05869          15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMY   94 (97)
T ss_pred             EcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEE
Confidence            34799999999999999999999987665422     2333333333468999999999999999999999999888877


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.|
T Consensus        95 l~v   97 (97)
T cd05869          95 LEV   97 (97)
T ss_pred             EEC
Confidence            753

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.72  E-value=7.6e-16  Score=78.30  Aligned_cols=77  Identities=19%  Similarity=0.311  Sum_probs=60.7

Q ss_pred             ccEEEEEEeeecCCC--eeEEEECCEEeccC---CcEEE-EecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          9 MRAEIICNVYANPPA--KVEWFRDGTAITLG---GRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         9 ~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +++.|.|.+.|.|.|  .+.|++++..+...   .++.. ........|.|.+++..|.|.|+|.+.|..|...+.+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            478999999999987  58999999877532   23322 2222235899999999999999999999999999998888


Q ss_pred             ecC
Q psy12132         83 GIP   85 (126)
Q Consensus        83 ~~~   85 (126)
                      |..
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            753

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.71  E-value=5e-16  Score=78.17  Aligned_cols=70  Identities=23%  Similarity=0.376  Sum_probs=56.6

Q ss_pred             EEEEeeecCCCeeEEEECCEEeccCCcEEEE--e-----cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132         13 IICNVYANPPAKVEWFRDGTAITLGGRIDMH--V-----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus        13 l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~--~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.|.+.|.|.|+++|+|++..+.........  .     ......|.|.++...|.|.|+|.+.|..|...+.+.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            6899999999999999999988765433221  1     12245799999999999999999999999998887765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.71  E-value=5.6e-16  Score=75.75  Aligned_cols=68  Identities=22%  Similarity=0.442  Sum_probs=54.0

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      |+++.|.|.+.|.|.|++.|++++..+....++..    ....|.|.++  .|.|.|+|.+.|..|...+...|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999987754443321    1236888887  47899999999999988777655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.70  E-value=4.2e-16  Score=80.17  Aligned_cols=74  Identities=22%  Similarity=0.424  Sum_probs=60.0

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEe--------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      |+++.|.|.+.+.|.|.+.|++++..+        ....++.....+   .|.|.+++..|.|.|+|.+.|..|...+.+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            678999999999999999999987532        123344443333   799999999999999999999999988888


Q ss_pred             EEEec
Q psy12132         80 QLSGI   84 (126)
Q Consensus        80 ~l~~~   84 (126)
                      .|.|.
T Consensus        78 ~l~V~   82 (90)
T cd05726          78 YLEVT   82 (90)
T ss_pred             EEEEe
Confidence            88764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.70  E-value=6.7e-16  Score=77.02  Aligned_cols=74  Identities=22%  Similarity=0.417  Sum_probs=58.8

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      +.|.|.+.|.|.|.+.|++++..+....+..+........|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            36899999999999999999988764432222222223479999999999999999999999999888888764

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.70  E-value=4e-16  Score=76.77  Aligned_cols=69  Identities=23%  Similarity=0.515  Sum_probs=55.9

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|+|++..+....++. .   ....|.|.++...|.|.|+|.+.|..|.....+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~-~---~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK-K---SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE-c---CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            3689999999999999999998886554332 1   1247999999999999999999999987766666553

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.70  E-value=5.8e-16  Score=78.28  Aligned_cols=79  Identities=20%  Similarity=0.400  Sum_probs=62.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      .+....|+++.|.|.+.+.|.|.+.|++++..+.......  .......|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            3556789999999999999999999999987664332221  11223589999999999999999999999988877776


Q ss_pred             E
Q psy12132         82 S   82 (126)
Q Consensus        82 ~   82 (126)
                      .
T Consensus        81 ~   81 (82)
T cd05856          81 D   81 (82)
T ss_pred             e
Confidence            5

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.69  E-value=9e-16  Score=77.05  Aligned_cols=76  Identities=17%  Similarity=0.405  Sum_probs=62.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +..+.+|+.+.|.|.+.+. .+.+.|+|++..+....++.+. ..   .|.|.+++..|+|.|+|.+.|..|.....+.+
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~---~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GE---EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CC---EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            4667899999999999875 5789999999888766565443 22   79999999999999999999988877766655


Q ss_pred             E
Q psy12132         82 S   82 (126)
Q Consensus        82 ~   82 (126)
                      .
T Consensus        78 ~   78 (79)
T cd04973          78 N   78 (79)
T ss_pred             e
Confidence            4

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.69  E-value=8.7e-16  Score=75.22  Aligned_cols=69  Identities=28%  Similarity=0.516  Sum_probs=56.0

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|++++..+.. .++......   .|.|.++...|.|.|+|.+.|..|...+...|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47899999999999999998765533 344444333   7999999999999999999999998888777653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.69  E-value=1.5e-15  Score=75.78  Aligned_cols=70  Identities=23%  Similarity=0.379  Sum_probs=56.0

Q ss_pred             EEEEeeecCCCeeEEEECCEEeccCCcEEE--Ee--c-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132         13 IICNVYANPPAKVEWFRDGTAITLGGRIDM--HV--S-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus        13 l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~--~~--~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.|.+.|.|.|+++|+|++..+....+...  ..  . .....|.|..+...|.|.|+|.+.|..|+....+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            678999999999999999998875544321  11  1 1235799999999999999999999999888877664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.69  E-value=1.7e-15  Score=77.93  Aligned_cols=78  Identities=17%  Similarity=0.387  Sum_probs=61.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      ++.+.+|+++.|.|.+.|. .|.+.|++++..+.. .++.+...  ...|.|.++++.|.|.|.|.+.|..|... ..+.
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence            4578899999999999999 999999999987654 33433322  24799999999999999999999988653 3555


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.|
T Consensus        88 L~V   90 (91)
T cd05740          88 LNV   90 (91)
T ss_pred             EEe
Confidence            543

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.69  E-value=3e-15  Score=79.46  Aligned_cols=80  Identities=21%  Similarity=0.449  Sum_probs=63.2

Q ss_pred             cCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEE--ecC--CeEEEEEecCC-CCCCEEEEEEEecCCceeEEEE
Q psy12132          6 APDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMH--VSS--EKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~--~~~--~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ..|.++.|.|.+.|.|.+.+.|++++..+.. ..++...  ..+  ....|.|.++. ..|.|.|+|.+.|..|.....+
T Consensus        21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            3567899999999999999999999988763 2344322  111  13579999987 5899999999999999999888


Q ss_pred             EEEecC
Q psy12132         80 QLSGIP   85 (126)
Q Consensus        80 ~l~~~~   85 (126)
                      .|.+..
T Consensus       101 ~L~~~~  106 (109)
T cd05773         101 QLVSTS  106 (109)
T ss_pred             EEEecC
Confidence            888753

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.69  E-value=7.4e-16  Score=75.39  Aligned_cols=67  Identities=24%  Similarity=0.491  Sum_probs=53.3

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.|.|.+.|.|.|.+.|+|++..+....++  ..   ...|.|.++...|.|.|+|.+.|..|.......+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            368999999999999999999988654332  22   23799999999999999999999988665544443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.68  E-value=2.2e-15  Score=76.86  Aligned_cols=72  Identities=26%  Similarity=0.516  Sum_probs=59.2

Q ss_pred             ceeccCCccEEEEEEe-eecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          2 HSITAPDMRAEIICNV-YANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ++.+.+|+++.|.|.+ .+.|.|.+.|++++..+.. ..++.....   ..|.|.++...|.|.|+|.+.|..|...
T Consensus         5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDD---GNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccC---CEEEEeECCcccCEEEEEEEEeccCcee
Confidence            4677899999999998 7889999999999988765 334444333   3799999999999999999999888653

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.68  E-value=2.8e-15  Score=76.33  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=59.2

Q ss_pred             ccEEEEEEeeecCCC--eeEEEECCEEeccCC---cEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          9 MRAEIICNVYANPPA--KVEWFRDGTAITLGG---RID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         9 ~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +++.|.|.+.+.|.|  ++.|++++..+....   ++. .........|.|.+++..|.|.|+|.+.|..|...+...|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999887  679999998775321   221 11112234899999999999999999999999888888887


Q ss_pred             ecC
Q psy12132         83 GIP   85 (126)
Q Consensus        83 ~~~   85 (126)
                      |..
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            753

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.68  E-value=1.7e-15  Score=75.10  Aligned_cols=69  Identities=29%  Similarity=0.583  Sum_probs=54.1

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEec--cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEEE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLS   82 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~   82 (126)
                      +.|.|.+.|.|.|.+.|++++..+.  ...++.....+   .|.|.++...|.|.|+|.+.|..|.. .....|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            4789999999999999999998775  33455443333   79999999999999999999998864 3444443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.68  E-value=1.9e-15  Score=76.42  Aligned_cols=76  Identities=17%  Similarity=0.292  Sum_probs=59.4

Q ss_pred             ccEEEEEEeee--cCCCeeEEEECCEEecc---CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          9 MRAEIICNVYA--NPPAKVEWFRDGTAITL---GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         9 ~~~~l~C~~~~--~p~~~~~w~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +++.|.|.+.+  .+.+.+.|+++++.|..   ..++..... .....|.|.+++..|.|+|+|.+.+..+...+...|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46899999976  44778999999998863   234433211 1234799999999999999999999999998888888


Q ss_pred             ec
Q psy12132         83 GI   84 (126)
Q Consensus        83 ~~   84 (126)
                      |.
T Consensus        81 V~   82 (85)
T cd05853          81 VR   82 (85)
T ss_pred             Ee
Confidence            75

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.67  E-value=4.5e-15  Score=77.46  Aligned_cols=80  Identities=21%  Similarity=0.496  Sum_probs=63.6

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccC--CcEEEEec----CCeEEEEEecCCCCC-CEEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~C~~~~~~~   73 (126)
                      .+.+..|+++.|.|.+.|.|.| .+.|++++..+...  .++.+...    +..+.|.|.+++..| .|.|.|.+.|..|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            3567889999999999999999 69999999877643  45555432    223589999999844 8999999999999


Q ss_pred             eeEEEEEE
Q psy12132         74 SSQQFIQL   81 (126)
Q Consensus        74 ~~~~~~~l   81 (126)
                      ...+.+.|
T Consensus        90 ~~~~~~~L   97 (98)
T cd05758          90 SGTAIISL   97 (98)
T ss_pred             cccEEEEe
Confidence            88877665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.67  E-value=1.5e-15  Score=75.51  Aligned_cols=71  Identities=24%  Similarity=0.442  Sum_probs=54.9

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEe-c--cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAI-T--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~-~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|++++... .  ...++.....  ...|.|.+++..|.|.|+|.+.|..|...+...|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            468999999999999999987532 2  1223333222  237999999999999999999999998888877765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.67  E-value=1.7e-15  Score=74.61  Aligned_cols=70  Identities=24%  Similarity=0.501  Sum_probs=55.6

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|++++..+... +....  .....|.|.++...|.|.|+|.+.|..|...+.+.+.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            468999999999999999988765432 22221  12247999999999999999999999998888877765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.66  E-value=5.1e-15  Score=73.96  Aligned_cols=71  Identities=31%  Similarity=0.548  Sum_probs=54.6

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE--EEEEEEe
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLSG   83 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~--~~~~l~~   83 (126)
                      +.|.|.+.|.|.|.+.|+|++..+.... ++.....  ...|.|.++...|.|.|.|.+.|..|...  +.+.|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            4789999999999999999998875443 3333222  23799999999999999999999988763  3444443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.65  E-value=7.9e-15  Score=76.15  Aligned_cols=78  Identities=28%  Similarity=0.508  Sum_probs=57.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc--EEEEecCCeEEEEEecC-----CCCCCEEEEEEEecC-Cc
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHI-----KDTDFGNYMCQASNN-LG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~~~-~~   73 (126)
                      +..+..|+++.|.|.+.+.|.|.+.|+|++..+.....  .....++   .+.+..+     .+.|.|.|+|.+.|. .|
T Consensus         8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G   84 (95)
T cd05722           8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQNDSLG   84 (95)
T ss_pred             CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence            45667899999999999999999999999988764332  3333333   4555554     588999999999999 88


Q ss_pred             ee-EEEEEEE
Q psy12132         74 SS-QQFIQLS   82 (126)
Q Consensus        74 ~~-~~~~~l~   82 (126)
                      .. +..+.|.
T Consensus        85 ~~~s~~~~l~   94 (95)
T cd05722          85 SIVSRTARLT   94 (95)
T ss_pred             cEEEeeeEEe
Confidence            66 4444443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.65  E-value=1.4e-15  Score=78.59  Aligned_cols=80  Identities=21%  Similarity=0.311  Sum_probs=61.2

Q ss_pred             ceeccCCccEEEEEEeee-----cCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      +..+.+|+.+.|.|.+.+     .|.+.+.|+|++..+...  ....+...  ...|.|.++...|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            456788999999999988     688899999988653221  11222221  237999999999999999999999988


Q ss_pred             eEEEEEEEe
Q psy12132         75 SQQFIQLSG   83 (126)
Q Consensus        75 ~~~~~~l~~   83 (126)
                      ....+.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            887776653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.65  E-value=1e-14  Score=76.32  Aligned_cols=81  Identities=22%  Similarity=0.372  Sum_probs=57.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-----CcEEEEecCCeEEEEEe--cCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVR--HIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+...     .+......+....+.+.  .+...|.|.|+|.+.|..|.
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~   89 (100)
T cd07693          10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE   89 (100)
T ss_pred             eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence            456788999999999999999999999999887641     12222333322233332  33689999999999999987


Q ss_pred             -eEEEEEEE
Q psy12132         75 -SQQFIQLS   82 (126)
Q Consensus        75 -~~~~~~l~   82 (126)
                       ....+.|.
T Consensus        90 ~~s~~~~l~   98 (100)
T cd07693          90 AVSRNASLE   98 (100)
T ss_pred             eecceEEEE
Confidence             44555544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.65  E-value=9.4e-15  Score=75.65  Aligned_cols=67  Identities=25%  Similarity=0.532  Sum_probs=53.1

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCC-CCCCEEEEEEEecCCceeE
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~   76 (126)
                      +|+++.|.|.+.|.|.|.+.|++++..+......... .++   .|.|.++. ..|.|.|+|.+.|..|...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g---~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG---NLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC---eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            4789999999999999999999999887643322222 223   68888874 6899999999999998764

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.65  E-value=3.6e-15  Score=74.16  Aligned_cols=70  Identities=21%  Similarity=0.471  Sum_probs=55.0

Q ss_pred             EEEEEEeee-cCCCeeEEEECCEEeccCCcEE---EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132         11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRID---MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus        11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +.|.|.+.+ .|.|.+.|++++..+....+..   +........|.|.++...|.|.|+|.+.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            468999999 8999999999998876543322   223334568999999999999999999999988766543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.65  E-value=2.1e-14  Score=74.08  Aligned_cols=80  Identities=20%  Similarity=0.428  Sum_probs=60.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCc-eeEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLG-SSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~   78 (126)
                      +..+..|+++.|.|.+.|.| +.+.|++ ++..+....++..... .....|.|.++...|.|.|+|.+.|..| ...++
T Consensus         9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s   87 (92)
T cd04977           9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT   87 (92)
T ss_pred             cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence            45678899999999999986 4999998 5655554444443332 2446899999999999999999999854 44666


Q ss_pred             EEEE
Q psy12132         79 IQLS   82 (126)
Q Consensus        79 ~~l~   82 (126)
                      +.|.
T Consensus        88 v~l~   91 (92)
T cd04977          88 VNLK   91 (92)
T ss_pred             EEEE
Confidence            6554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.64  E-value=6.7e-15  Score=75.68  Aligned_cols=76  Identities=25%  Similarity=0.542  Sum_probs=56.6

Q ss_pred             CccEEEEEEeeecCCCeeEEEEC----CEEeccCCc--EEEEec-------CCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRD----GTAITLGGR--IDMHVS-------SEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      |+++.|.|.+.+.|.|.+.|++.    +..+.....  ......       .....|.|.+++..|.|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    333332211  111111       11247999999999999999999999998


Q ss_pred             eEEEEEEEe
Q psy12132         75 SQQFIQLSG   83 (126)
Q Consensus        75 ~~~~~~l~~   83 (126)
                      ..+...|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888777765

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>KOG3513|consensus

Probab=99.64  E-value=1.5e-14  Score=98.83  Aligned_cols=116  Identities=16%  Similarity=0.325  Sum_probs=91.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc---EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      +..+..|+++.|-|.+.|.|.|+++|++|+..+....+   ..+.. +   .|.|.+++..|+|+|+|.+.|..|...+.
T Consensus       340 d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~-g---~L~is~v~~~dsg~YQC~A~Nk~G~i~an  415 (1051)
T KOG3513|consen  340 DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD-G---TLIISNVQESDSGVYQCIAENKYGTIYAN  415 (1051)
T ss_pred             eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC-C---EEEEEecccccCeEEEeeeecccceEeee
Confidence            45678899999999999999999999999998875554   44433 3   79999999999999999999999999999


Q ss_pred             EEEEecCCCCeeccCcc-----eeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         79 IQLSGIPNIPVFQKSSR-----RLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        79 ~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      ..|.|...+|.+...+.     ...+..+.+-|.+.+.+.   ..+.|.+.
T Consensus       416 A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~---p~~~W~k~  463 (1051)
T KOG3513|consen  416 AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPK---PKVSWLKG  463 (1051)
T ss_pred             eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCc---ceEEEEcC
Confidence            99999888777665333     235667888888865543   24455553

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.64  E-value=7.3e-15  Score=74.10  Aligned_cols=73  Identities=23%  Similarity=0.384  Sum_probs=55.9

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCE----Ee-ccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGT----AI-TLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~----~~-~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      |+++.|.|.+.+.|.|.+.|++++.    .+ ....   ++...   ....|.|.++...|.|.|.|.+.|..|...+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT---NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc---cccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            6789999999999999999999631    11 1111   11111   124799999999999999999999999998888


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .|.|
T Consensus        78 ~l~v   81 (81)
T cd05765          78 PLSV   81 (81)
T ss_pred             EEeC
Confidence            7764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=5.6e-15  Score=75.93  Aligned_cols=76  Identities=24%  Similarity=0.493  Sum_probs=56.0

Q ss_pred             CccEEEEEEeeecCCCeeEEEECC----EEeccCC--cEEEEe-------cCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDG----TAITLGG--RIDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~----~~~~~~~--~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      |+++.|.|.+.|.|.|++.|+|++    ..+....  ......       ......|.|.++...|.|.|+|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999853    2222111  111111       112247999999999999999999999998


Q ss_pred             eEEEEEEEe
Q psy12132         75 SQQFIQLSG   83 (126)
Q Consensus        75 ~~~~~~l~~   83 (126)
                      ..+.+.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888777765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.62  E-value=1.6e-14  Score=70.86  Aligned_cols=62  Identities=23%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +.|.|.+.|.|.|++.|+|++..+... .++.  .++  ..|.|.++...|.|.|+|.+.+......
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~   63 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VDG--YSLVIKDVTEEDAGIYTILLGIKQYNLF   63 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eCC--CEEEECcCCHHHCEEEEEEEEccccceE
Confidence            368999999999999999999887654 3332  222  3799999999999999999998744333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG3513|consensus

Probab=99.61  E-value=2.7e-14  Score=97.70  Aligned_cols=106  Identities=21%  Similarity=0.358  Sum_probs=88.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|.++.+.|.+.+.|.|.+.|.+.+..+..++++.+..+|   +|.|.++.++|.|.|+|.+.|..|.......|.
T Consensus       436 ~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~  512 (1051)
T KOG3513|consen  436 VMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLI  512 (1051)
T ss_pred             EEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEE
Confidence            45667999999999999999999999988877788899888888   899999999999999999999999999999998


Q ss_pred             ecCCCCeecc--CcceeCCCeeEEEEEEccC
Q psy12132         83 GIPNIPVFQK--SSRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~  111 (126)
                      +...+.+...  ......+..+.|.|+....
T Consensus       513 Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD  543 (1051)
T KOG3513|consen  513 VKDATRITLAPSNTDVKVGESVTLTCEASHD  543 (1051)
T ss_pred             EecCceEEeccchhhhccCceEEEEeecccC
Confidence            8755444332  2233457789999988533

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.60  E-value=1.3e-14  Score=72.49  Aligned_cols=64  Identities=31%  Similarity=0.617  Sum_probs=48.4

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCC----CCCEEEEEEEecCCceeE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~   76 (126)
                      +.|.|.+.|.|.|++.|++++..+...  .++....  ....|.|..+..    .|.|.|+|.+.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~--~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP--DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC--CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            478999999999999999999877533  2333322  233788888753    689999999999988654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.60  E-value=8.7e-14  Score=72.04  Aligned_cols=66  Identities=27%  Similarity=0.562  Sum_probs=51.9

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCceeEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~   77 (126)
                      |+++.|.|.+.|.|.|+++|++++..+...  .++.+. .+   .|.|.++. ..|.|.|+|.+.|..|....
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AG---NLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-CC---eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            468999999999999999999999887533  233332 23   68887755 58999999999999886643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.60  E-value=2.3e-14  Score=71.52  Aligned_cols=65  Identities=25%  Similarity=0.543  Sum_probs=48.0

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCC----CCCEEEEEEEecCCceeEE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~   77 (126)
                      +.|.|.+.|.|.|++.|++++..+...  .++....  ....|.|..+..    .|.|.|+|.+.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            478999999999999999999876432  2333322  223677777654    3789999999999987654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.60  E-value=3.3e-14  Score=71.45  Aligned_cols=68  Identities=15%  Similarity=0.368  Sum_probs=53.8

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ++.+..|+++.|.|.+.|.|.| .+.|++++..+...  .    ......|.|..+  .|.|.|.|.+.|..|....
T Consensus         7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            5678899999999999999999 79999999877531  1    112236888777  4789999999999886543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.59  E-value=5e-14  Score=72.74  Aligned_cols=66  Identities=27%  Similarity=0.519  Sum_probs=52.4

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCceeEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~   77 (126)
                      +..+.|.|.+.|.|.|.+.|++++..+.. ..++.. .++   .|.|.++. ..|.|.|.|.+.|..|....
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            44799999999999999999999987753 344433 233   78998875 58999999999999886643

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.59  E-value=3.9e-14  Score=70.67  Aligned_cols=65  Identities=28%  Similarity=0.500  Sum_probs=48.5

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEec--cCCcEEEEecCCeEEEEEecCCC----CCCEEEEEEEecCCceeEE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~   77 (126)
                      +.|.|.+.|.|.|.+.|++++..+.  ...++.+..  ....|.|..+..    .|.|.|+|.+.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4689999999999999999998653  334444322  224788887642    4689999999999986644

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.58  E-value=5.9e-14  Score=70.47  Aligned_cols=68  Identities=29%  Similarity=0.631  Sum_probs=50.1

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEec--------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEE
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQL   81 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l   81 (126)
                      +.|.|.+.|.|.|.+.|++++....        ...++....+   ..|.|.++...|.|.|.|.+.|..|.. ...+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4789999999999999999642211        2234443333   379999999999999999999998865 344443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.57  E-value=3.5e-13  Score=68.43  Aligned_cols=80  Identities=23%  Similarity=0.473  Sum_probs=62.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+++.|.|.+.+.|.+.+.|++++..+......... .......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            45678999999999999999999999998776543323221 12233579999999999999999999998888777766


Q ss_pred             E
Q psy12132         82 S   82 (126)
Q Consensus        82 ~   82 (126)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            5

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.56  E-value=4e-13  Score=69.51  Aligned_cols=70  Identities=16%  Similarity=0.303  Sum_probs=54.1

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEECCEEe--------ccCCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEec
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +++.+.+|+++.|.|.+.+.|.|.+.|++.+..+        ....++...... ....|.|.++...|.|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            3678899999999999999999999999876432        122344432222 246899999999999999999876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.56  E-value=1.1e-13  Score=68.99  Aligned_cols=70  Identities=21%  Similarity=0.492  Sum_probs=52.7

Q ss_pred             EEEEEEeee-cCCCeeEEEECCEEeccC----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132         11 AEIICNVYA-NPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus        11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +.|.|.+.+ .|.+.+.|++++..+...    .++..........|.|.++...|+|.|+|.+.|..|...+.+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999864 677899999999877532    2233333334468999999999999999999999887776553

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.56  E-value=9.2e-14  Score=70.54  Aligned_cols=76  Identities=17%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             CccEEEEEEeeec--CCCeeEEEECCEEeccCC----cEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          8 DMRAEIICNVYAN--PPAKVEWFRDGTAITLGG----RID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         8 g~~~~l~C~~~~~--p~~~~~w~~~~~~~~~~~----~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      |+++.|.|.+.+.  |.+.+.|.+.+..+....    +.. .........|.|.+++..|.|.|+|.+.|..+...+...
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999999  788999988765432111    000 111122458999999999999999999999888877776


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      +.+
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            653

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG4194|consensus

Probab=99.56  E-value=4.5e-14  Score=92.00  Aligned_cols=110  Identities=16%  Similarity=0.248  Sum_probs=85.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEE-ecc--CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTA-ITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~-~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      ++....|+.+.|.|.+.|.|.|.+.|.|+|.. ++.  ..++..+++.  ..+-|.+++.+|.|.|+|.+.|..|+..+.
T Consensus       621 dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isan  698 (873)
T KOG4194|consen  621 DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISAN  698 (873)
T ss_pred             cceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCC--CEEEEecccccccceeEEeeeccccceeec
Confidence            46677899999999999999999999997654 543  3455555443  379999999999999999999999999888


Q ss_pred             EEEEecCCCCe--eccCcceeCCCeeEEEEEEccCCc
Q psy12132         79 IQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        79 ~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ..+.|...|..  .........++...+.|...+.++
T Consensus       699 AtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a  735 (873)
T KOG4194|consen  699 ATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA  735 (873)
T ss_pred             eEEEEecCCcccccccceEEEecceEEEEEecCCCCC
Confidence            88887554332  223344456888999999877654

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.54  E-value=3.3e-13  Score=69.95  Aligned_cols=71  Identities=17%  Similarity=0.293  Sum_probs=54.0

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEECCEE--------eccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTA--------ITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~--------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +++.+.+|+++.|.|.+.+.|.+.+.|++.+..        .....++..... .....|.|.+++..|.|.|.|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            367889999999999999999999999863221        122345554322 24468999999999999999998864

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.54  E-value=3.1e-13  Score=68.61  Aligned_cols=66  Identities=23%  Similarity=0.364  Sum_probs=53.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +..+..|+++.|.|.+. .+.+++.|.+++..+... .++.+. ++   .|.|.+++..|.|.|+|.+.+..
T Consensus         5 ~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           5 QRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             eEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence            46788999999999986 467899999999988755 344433 33   69999999999999999988753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.54  E-value=3.7e-13  Score=68.27  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCC----cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc--eeEEEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL   81 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l   81 (126)
                      |+++.|.|.+.+.|.+.+.|++.+.......    +.........+.|.|.+++..|+|.|.|.+.+..+  .....+.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998765322111    11111111245899999999999999999998654  45666666


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            55

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.53  E-value=5.1e-13  Score=68.78  Aligned_cols=66  Identities=27%  Similarity=0.569  Sum_probs=51.2

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCC-CCCEEEEEEEecCCceeE
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~   76 (126)
                      .+.++.|.|.+.|.|.|.+.|++++..+...  .++.. ..+   .|.|.++.. .|.|.|+|.+.|..|...
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~~---~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-VGG---NLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-ECC---EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            3467999999999999999999999887432  23322 222   688887764 899999999999988654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.51  E-value=4.7e-13  Score=68.66  Aligned_cols=78  Identities=19%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC-CceeE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN-LGSSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~   76 (126)
                      .+.+.+|+++.|.|.+.+ |.+.+.|++++..+...    .++....    ..|.|.+++..|.|.|.|.+.+. .+...
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE----DGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC----CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            456788999999999976 88899999998765433    2332221    25889999999999999999865 45556


Q ss_pred             EEEEEEec
Q psy12132         77 QFIQLSGI   84 (126)
Q Consensus        77 ~~~~l~~~   84 (126)
                      +.+.|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            66777654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.50  E-value=1.6e-12  Score=67.42  Aligned_cols=80  Identities=24%  Similarity=0.469  Sum_probs=63.3

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccC--CcEEEEec----CCeEEEEEecCCCCC-CEEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~C~~~~~~~   73 (126)
                      .+.+..|+++.|.|.+.+.|.| .+.|..++..+...  .++.+...    +..+.|.|.++...| .|.|.|.+.|..|
T Consensus        10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            3567889999999999888877 67898877766543  46655432    356799999998877 6899999999999


Q ss_pred             eeEEEEEE
Q psy12132         74 SSQQFIQL   81 (126)
Q Consensus        74 ~~~~~~~l   81 (126)
                      .....+.|
T Consensus        90 ~d~~~i~L   97 (98)
T cd05898          90 SGTAIIQL   97 (98)
T ss_pred             cceEEEEe
Confidence            98877765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>KOG4221|consensus

Probab=99.48  E-value=1.3e-12  Score=90.25  Aligned_cols=110  Identities=24%  Similarity=0.377  Sum_probs=77.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +..+..|+++.|.|.+.+.|.|.+.|.+++..+...+ ++....   ...|.|.++...|+|.|+|.+.|......+...
T Consensus       246 ~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g---~~slliS~a~~~dSg~YtC~Atn~~D~idasae  322 (1381)
T KOG4221|consen  246 NAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVG---GSSLLISNATDDDSGKYTCRATNTNDSIDASAE  322 (1381)
T ss_pred             ccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEec---ccceEEeccccccCceEEEEecCCCcccccceE
Confidence            3567789999999999999999999999998887654 332222   237999999999999999999995545555555


Q ss_pred             EEecCCCCeeccCc---ceeCCCeeEEEEEEccCCccee
Q psy12132         81 LSGIPNIPVFQKSS---RRLGPDGYRLVWQVDTYSAIIQ  116 (126)
Q Consensus        81 l~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  116 (126)
                      +.|... |-++..+   ....+..+.+.|...+. |+..
T Consensus       323 v~V~a~-P~~~~~p~~l~A~e~~die~ec~~~g~-p~p~  359 (1381)
T KOG4221|consen  323 VTVLAP-PGFTKAPTTLVAHESMDIEFECPVSGK-PIPT  359 (1381)
T ss_pred             EEEEcC-CCCCCCCcceeeeeccceeEeCCCCCC-Ccce
Confidence            555433 3333322   23445566777766666 4443

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.48  E-value=9.2e-13  Score=67.00  Aligned_cols=74  Identities=24%  Similarity=0.454  Sum_probs=57.4

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+.+.+|++++|.|.+.+ .|.+.+.|++++..+...  . ..   ....|.|.+++..|.|.|.|.+.|..|...+...
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~-~~---~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~   83 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A-MD---FNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT   83 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c-cc---cCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence            356788999999999864 678899999987554321  1 11   1237999999999999999999999888877655


Q ss_pred             E
Q psy12132         81 L   81 (126)
Q Consensus        81 l   81 (126)
                      |
T Consensus        84 l   84 (85)
T cd05754          84 L   84 (85)
T ss_pred             E
Confidence            4

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.47  E-value=9.2e-13  Score=67.77  Aligned_cols=75  Identities=20%  Similarity=0.389  Sum_probs=56.8

Q ss_pred             eeccCCccEEEEEEeee-----cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          3 SITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      +.+..|.++.|.|...+     +|.|.+.|+|++..+...... ...   ...|.|.++...|.|.|+|.+.+..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~~---~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FVK---GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Eec---CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            46778999999998643     256799999999988754433 222   238999999999999999999987665554


Q ss_pred             EEEE
Q psy12132         78 FIQL   81 (126)
Q Consensus        78 ~~~l   81 (126)
                      .+..
T Consensus        81 ~~t~   84 (92)
T cd05757          81 NVTR   84 (92)
T ss_pred             EEEE
Confidence            4433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.46  E-value=1e-12  Score=65.64  Aligned_cols=58  Identities=21%  Similarity=0.558  Sum_probs=47.3

Q ss_pred             eeccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..+.+|++++|.|.+.+.|. ..+.|++++..+...          ...|.|.++ ..|+|.|+|.+.+.
T Consensus        10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC
Confidence            45778999999999988775 479999999876321          126889999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00409 IG Immunoglobulin

Probab=99.44  E-value=2.7e-11  Score=61.03  Aligned_cols=82  Identities=24%  Similarity=0.533  Sum_probs=63.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            46778899999999998877889999997 77665455555554443568999999999999999999987766655555


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.+
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            543

>smart00410 IG_like Immunoglobulin like

Probab=99.44  E-value=2.7e-11  Score=61.03  Aligned_cols=82  Identities=24%  Similarity=0.533  Sum_probs=63.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            46778899999999998877889999997 77665455555554443568999999999999999999987766655555


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.+
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.43  E-value=1.2e-11  Score=73.46  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=71.6

Q ss_pred             ceeccCCccEEEEEEeeecC-----------CCeeEEEECCEEe--cc-CCc--E---EEEe-cCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP-----------PAKVEWFRDGTAI--TL-GGR--I---DMHV-SSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-----------~~~~~w~~~~~~~--~~-~~~--~---~~~~-~~~~~~l~i~~~~~~d~   61 (126)
                      ++.+.+|+++.|.|.+.+.|           .+.+.|+|.+...  .. +.+  .   .... ......|.|.++...|+
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE  110 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence            56788999999999986643           4589999987542  11 111  0   0000 01124899999999999


Q ss_pred             EEEEEEEecCCceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEc
Q psy12132         62 GNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD  109 (126)
Q Consensus        62 g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  109 (126)
                      |.|+|.+.|..+.....+.|.+...+.    ......+..+.|+|...
T Consensus       111 G~Y~C~a~N~~~~~~~~i~L~V~~~~~----~~~~~~G~~v~L~C~~~  154 (227)
T PHA02826        111 GIYICTISSGNICEESTIRLTFDSGTI----NYQFNSGKDSKLHCYGT  154 (227)
T ss_pred             EEEEEEEEECCcceEEEEEEEEecCCc----cceEecCCCEEEEeeCC
Confidence            999999999888777888777743221    12234677899999874

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.42  E-value=8.2e-13  Score=68.04  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=53.0

Q ss_pred             ceeccCCccEEEEEEe-eecCCCeeEEEECCEEe--ccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNV-YANPPAKVEWFRDGTAI--TLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~--~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+.+.+|+.+.|.|.. .+.|.+.+.|++++..+  ....+..+. .+|   .|.|.++...|.|.|+|.+.|...
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEeccc
Confidence            3567889999999975 78899999999997653  222332222 234   899999999999999999998653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.41  E-value=1.7e-11  Score=63.63  Aligned_cols=71  Identities=18%  Similarity=0.322  Sum_probs=52.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCE-Ee-------ccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT-AI-------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~-~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.+.+|+++.|.|.+.+.+.+.+.|++.+. .+       ....++.... ......|.|.+++..|.|.|.|.+.+..
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            5678899999999999888888999986322 11       1224554432 2234589999999999999999988754

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.40  E-value=8.7e-12  Score=59.39  Aligned_cols=62  Identities=19%  Similarity=0.500  Sum_probs=48.8

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +|+++.|.|.+.+.+.+.+.|++++..+..  .....  .....|.|.++...|.|.|.|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            478999999988888899999998877662  21111  123479999999999999999998764

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.40  E-value=1.4e-12  Score=67.07  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=55.9

Q ss_pred             ceeccCCccEEEEEE-eeecCCCeeEEEECCEE-eccCCcEEEEecCCeEEEEEecCCCCCCE-EEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICN-VYANPPAKVEWFRDGTA-ITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~-~~~~p~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~   72 (126)
                      .+.+.+|+.+.|.|. ..|.|.|.+.|.+++.. +....++.+..+|   .|.|.++...|.| .|.|.+.+..
T Consensus        12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             eeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEccc
Confidence            467889999999997 68999999999986543 4445666655555   8999999999999 7999999864

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.40  E-value=7.6e-12  Score=64.49  Aligned_cols=72  Identities=17%  Similarity=0.351  Sum_probs=53.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEe-c-------------cCCcEEEEe---cCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAI-T-------------LGGRIDMHV---SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+..|++++|.|...+.+.+.+.|+++++.. .             ...++....   ..+...|.|.+++..|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45778999999999988889999999765321 1             112222222   233568999999999999999


Q ss_pred             EEEecCCce
Q psy12132         66 CQASNNLGS   74 (126)
Q Consensus        66 C~~~~~~~~   74 (126)
                      |.+.+..++
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.39  E-value=1.5e-11  Score=63.26  Aligned_cols=77  Identities=21%  Similarity=0.337  Sum_probs=55.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--EEe----ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe-cCCcee
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--TAI----TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGSS   75 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~   75 (126)
                      +...+|+++.|.|.. +.|.|.+.|++..  ...    ....++... .   ..|.|.++.+.|+|.|+|.+. +..+..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-E---RGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-c---CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            567889999999997 4788999999832  111    122343332 2   269999999999999999997 455555


Q ss_pred             EEEEEEEec
Q psy12132         76 QQFIQLSGI   84 (126)
Q Consensus        76 ~~~~~l~~~   84 (126)
                      ...+.|.|.
T Consensus        81 ~~~~~l~v~   89 (91)
T cd05871          81 LAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEe
Confidence            666666653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.39  E-value=9.4e-12  Score=62.82  Aligned_cols=64  Identities=19%  Similarity=0.343  Sum_probs=53.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ++.+..|+++.|.|...+ +.+.+.|++++..+..+.++.....+    |.|..++..|+|.|.|.+..
T Consensus         5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence            567889999999999985 47799999999888766666655554    88999999999999998763

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.37  E-value=5.3e-11  Score=74.42  Aligned_cols=115  Identities=14%  Similarity=0.215  Sum_probs=73.3

Q ss_pred             eccCCccEEEEEE-----eeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE-
Q psy12132          4 ITAPDMRAEIICN-----VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-   77 (126)
Q Consensus         4 ~~~~g~~~~l~C~-----~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-   77 (126)
                      .+.+|..+.+.|.     ..+.|.+.+.|+++.. + ...++.....   ..|.|.++...|.|.|+|.+.+..+.... 
T Consensus       132 ~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~  206 (326)
T PHA02785        132 IVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKNDAGYYTCVLKYIYGDKTYN  206 (326)
T ss_pred             eecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEeecChhhCeEEEEEEEeccCCEEEe
Confidence            3557888999997     2357888999987642 2 2334433322   37999999999999999999987665432 


Q ss_pred             ---EEEEEec--CCCCeecc--CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         78 ---FIQLSGI--PNIPVFQK--SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        78 ---~~~l~~~--~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                         .+.+.+.  ..+|....  ......+..+.|.|.+.+.++.....++|.+
T Consensus       207 ~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k  259 (326)
T PHA02785        207 VTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS  259 (326)
T ss_pred             EEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEE
Confidence               2234332  23332222  2223347789999999877543222455544

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.35  E-value=1.3e-10  Score=59.90  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEECCEEe--------ccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +++.+.+|+++.|.|.+.+.....+.|++.+..+        ....|+.... .+...+|.|.+++..|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            3678899999999999988777778888755332        2446776655 345678999999999999999988753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.34  E-value=8.9e-11  Score=60.73  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCCc-EEEEec-C---CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGR-IDMHVS-S---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~~-~~~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +.+.+|+++.|.|.+.+.|.|+ +.|.+.+..+..... ...... .   -.+.|.+.+++..|.|.|+|.+.|..+..+
T Consensus        13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s   92 (101)
T cd05860          13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS   92 (101)
T ss_pred             EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence            5788999999999999999997 999998765532221 111111 1   236899999999999999999999988888


Q ss_pred             EEEEEEe
Q psy12132         77 QFIQLSG   83 (126)
Q Consensus        77 ~~~~l~~   83 (126)
                      ..+.|.+
T Consensus        93 ~tF~l~v   99 (101)
T cd05860          93 VTFNVYV   99 (101)
T ss_pred             EEEEEEE
Confidence            8888775

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.33  E-value=1.7e-11  Score=62.00  Aligned_cols=63  Identities=21%  Similarity=0.348  Sum_probs=49.4

Q ss_pred             eccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          4 ITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      .+.+|++++|.|.+.. .+.+.+.|++++..+....        ....|.|..+...|+|.|.|.+.+..+.
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence            5778999999999853 4566899999987653211        1237999999999999999999987653

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.33  E-value=1.3e-11  Score=59.38  Aligned_cols=61  Identities=23%  Similarity=0.549  Sum_probs=44.6

Q ss_pred             CccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCCe--EEEEEecCCCCCCEEEEEEE
Q psy12132          8 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         8 g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~   68 (126)
                      |+++.|.|.+ .+.+...+.|++++.................  ..|.|.++...|.|.|+|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 6677789999998765543333222222211  13999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.32  E-value=3.4e-11  Score=71.55  Aligned_cols=66  Identities=17%  Similarity=0.394  Sum_probs=53.1

Q ss_pred             eccCCccEEEEEEeee-----cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+|+++.|.|.+.+     .|.|++.|+|++..+....++....+  ...|.|.+++..|+|.|+|.+...
T Consensus       140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence            4567999999999752     35789999999998876666654433  238999999999999999998864

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.28  E-value=1.3e-10  Score=59.12  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEecc---CC--cE-EEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAITL---GG--RI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~---~~--~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      |+++.|.|.+.+.+.+  .+.|...+.....   ..  +. ........+.|.|.+++..|.|.|+|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            6889999999876644  7899876643211   11  11 011112345899999999999999999999887777666


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .|.|
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            6655

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.26  E-value=1.2e-10  Score=58.28  Aligned_cols=70  Identities=27%  Similarity=0.652  Sum_probs=52.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc-eeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG-SSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~l   81 (126)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++..+.....          .+.+..+...|.|.|.|.+.+..+ .....+.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            4567899999999999888899999998876652211          155677888999999999998554 33445554


Q ss_pred             E
Q psy12132         82 S   82 (126)
Q Consensus        82 ~   82 (126)
                      .
T Consensus        79 ~   79 (80)
T PF13895_consen   79 T   79 (80)
T ss_dssp             E
T ss_pred             e
Confidence            4

...

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.25  E-value=1.7e-10  Score=59.93  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=53.4

Q ss_pred             ceeccCCccEEEEEEee-----------ecCCCeeEEEECCEEeccCCc-----EEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVY-----------ANPPAKVEWFRDGTAITLGGR-----IDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-----------~~p~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      ...+.+|+.+.|.|...           ......+.|+|++..+.....     .++...+  ..|.|..+..+|+|.|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEEE
Confidence            35678999999999862           122347999998644332211     1222222  27999999999999999


Q ss_pred             EEEecCCceeEEEEEEE
Q psy12132         66 CQASNNLGSSQQFIQLS   82 (126)
Q Consensus        66 C~~~~~~~~~~~~~~l~   82 (126)
                      |.+.|........+.|.
T Consensus        87 C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          87 CVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEECCCCcceEEEEEEE
Confidence            99999765555555444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.20  E-value=8.8e-10  Score=69.05  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             eeccCCccEEEEEEe-----eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          3 SITAPDMRAEIICNV-----YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-----~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ..+.+|+.+.+.|.+     .|.|.+++.|+|++....   +.....++  ..|.|.++...|+|.|+|.+.|..+....
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g--~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~  110 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNG--SNMLILNPTQSDSGIYICITKNETYCDMM  110 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCC--ceEEEcccCcccCeEEEEEEECCCcceEE
Confidence            356789999999997     578889999999874311   11122222  25778999999999999999998877777


Q ss_pred             EEEEEecCCC-Cee---ccCcceeCCCeeEEEEE
Q psy12132         78 FIQLSGIPNI-PVF---QKSSRRLGPDGYRLVWQ  107 (126)
Q Consensus        78 ~~~l~~~~~~-~~~---~~~~~~~~~~~~~l~~~  107 (126)
                      .+.|.+.... +.+   ..+.....+..+.+.|.
T Consensus       111 s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~  144 (326)
T PHA02785        111 SLNLTIVSVSESNIDLISYPQIVNERSTGEMVCP  144 (326)
T ss_pred             EEEEEEEecCCCccceeeccceecccCcEEEECC
Confidence            7766653322 111   11122235566778885

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.18  E-value=3.6e-10  Score=58.29  Aligned_cols=71  Identities=13%  Similarity=0.301  Sum_probs=52.0

Q ss_pred             eeccCCccEEEEEEe-e----ecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          3 SITAPDMRAEIICNV-Y----ANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~----~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +.+..|.+..|.|.- .    ..+.+.+.|+|++..+.... ++....+  ...|.|.++...|.|.|+|.+.+..+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            456778899999973 2    34567999999998876433 3322122  2379999999999999999999875433

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.13  E-value=1.9e-09  Score=57.23  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=52.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCE---E---e--------ccCCcEEEEec--CCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT---A---I--------TLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~---~---~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.+...+.|++...   .   +        ....++.+...  .....|.|.+++..|+|.|.
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   86 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF   86 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence            4678899999999999877778999998431   1   1        01245544432  25679999999999999999


Q ss_pred             EEEecCC
Q psy12132         66 CQASNNL   72 (126)
Q Consensus        66 C~~~~~~   72 (126)
                      |.+.+..
T Consensus        87 C~~~~~~   93 (109)
T cd04983          87 CALSESG   93 (109)
T ss_pred             EEEecCC
Confidence            9988653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.12  E-value=2.9e-09  Score=56.69  Aligned_cols=77  Identities=12%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             CCccEEEEEEeeecC------------CCeeEEEECC--E---Eec-c----------CCcEEEEe---cCCeEEEEEec
Q psy12132          7 PDMRAEIICNVYANP------------PAKVEWFRDG--T---AIT-L----------GGRIDMHV---SSEKHSLLVRH   55 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p------------~~~~~w~~~~--~---~~~-~----------~~~~~~~~---~~~~~~l~i~~   55 (126)
                      .|++++|.|......            .+.+.|+|..  .   .+. .          ..|+.+..   ...++.|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            3589999842  1   110 0          12444432   22567999999


Q ss_pred             CCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         56 IKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      ++..|+|.|.|.+.+........+.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999876555555555554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG4221|consensus

Probab=99.08  E-value=6.1e-09  Score=72.96  Aligned_cols=109  Identities=18%  Similarity=0.304  Sum_probs=79.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~   80 (126)
                      +..+..|+++.|.|.+.+-|.|.+.|.++..++...+++....++   .|.|.++...|.|.|+|.+.+...+. +....
T Consensus       149 ~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~  225 (1381)
T KOG4221|consen  149 STTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAE  225 (1381)
T ss_pred             ceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeE
Confidence            456788999999999988888899999999877777777777777   89999999999999999998753222 22233


Q ss_pred             EEecCCCC-----eecc---CcceeCCCeeEEEEEEccCCc
Q psy12132         81 LSGIPNIP-----VFQK---SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        81 l~~~~~~~-----~~~~---~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+...+.     .+..   ......++.+.|.|.+.+.+.
T Consensus       226 ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~  266 (1381)
T KOG4221|consen  226 LTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK  266 (1381)
T ss_pred             EEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC
Confidence            33322111     1222   222457889999999988754

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.08  E-value=4.5e-09  Score=55.34  Aligned_cols=77  Identities=18%  Similarity=0.285  Sum_probs=51.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC-----EEec--------------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT--------------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~--------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      ..+.+|+++.|.|.........+.|+|..     ..+.              ...+..+..++   +|.|.++...|.|.
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~   84 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF   84 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence            45678999999997653334489999952     1110              11333344444   89999999999999


Q ss_pred             EEEEEecCC-ceeEEEEEEE
Q psy12132         64 YMCQASNNL-GSSQQFIQLS   82 (126)
Q Consensus        64 y~C~~~~~~-~~~~~~~~l~   82 (126)
                      |+|.+.+.. ....+.+.|.
T Consensus        85 Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          85 YTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEeCCccEEEEEEEEE
Confidence            999988765 3444554443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=99.06  E-value=2.4e-09  Score=56.41  Aligned_cols=70  Identities=17%  Similarity=0.340  Sum_probs=50.6

Q ss_pred             eccCCccEEEEEEeeec-CCCeeEEEECCE-----Eec------------cCCcEEEEecC--CeEEEEEecCCCCCCEE
Q psy12132          4 ITAPDMRAEIICNVYAN-PPAKVEWFRDGT-----AIT------------LGGRIDMHVSS--EKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~-----~~~------------~~~~~~~~~~~--~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+|+++.|.|.+... +...+.|++...     .+.            ...++.+....  ....|.|.+++..|.|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            56789999999999865 567899998432     110            11344443332  46789999999999999


Q ss_pred             EEEEEecCCc
Q psy12132         64 YMCQASNNLG   73 (126)
Q Consensus        64 y~C~~~~~~~   73 (126)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999887653

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.06  E-value=7.7e-09  Score=52.14  Aligned_cols=63  Identities=19%  Similarity=0.414  Sum_probs=43.1

Q ss_pred             cEEEEEEeee-cCCCeeEEEECCEEeccCCc-EEEEecCC----eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132         10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGR-IDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus        10 ~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+.|.|.+.+ .|.+.+.|++++..+..... .....++.    .+.|.+......|.+.|+|.+.+..
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            3689999986 58889999999987653211 11112221    2357777776778889999998864

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.06  E-value=1e-08  Score=53.62  Aligned_cols=76  Identities=21%  Similarity=0.387  Sum_probs=50.4

Q ss_pred             CccEEEEEEeeecCC---CeeEEEECC--EEec--c-------------CCcEEEEec---CCeEEEEEecCCCCCCEEE
Q psy12132          8 DMRAEIICNVYANPP---AKVEWFRDG--TAIT--L-------------GGRIDMHVS---SEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         8 g~~~~l~C~~~~~p~---~~~~w~~~~--~~~~--~-------------~~~~~~~~~---~~~~~l~i~~~~~~d~g~y   64 (126)
                      |+++.|.|.......   ..+.|++..  ..+.  .             ..++.+...   ....+|.|.+++..|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            688999999853222   268898744  1110  0             023333211   2346899999999999999


Q ss_pred             EEEEecCCceeEEEEEEEe
Q psy12132         65 MCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        65 ~C~~~~~~~~~~~~~~l~~   83 (126)
                      +|.+.+..+.....+.|.+
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987666777776654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.04  E-value=1.7e-08  Score=53.30  Aligned_cols=77  Identities=18%  Similarity=0.452  Sum_probs=52.3

Q ss_pred             CCccEEEEEEeeecC------CCeeEEEECC-----E-Eec--cCCcE--------EEE---ecCCeEEEEEecCCCCCC
Q psy12132          7 PDMRAEIICNVYANP------PAKVEWFRDG-----T-AIT--LGGRI--------DMH---VSSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p------~~~~~w~~~~-----~-~~~--~~~~~--------~~~---~~~~~~~l~i~~~~~~d~   61 (126)
                      .|++++|.|.....+      ...+.|++..     . .+.  .....        +..   ....+.+|.|.+++..|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987543      4589999862     1 111  11111        111   122457999999999999


Q ss_pred             EEEEEEEecCCceeEEEEEEEe
Q psy12132         62 GNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        62 g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |.|.|.+.+..+.....+.|.|
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEE
Confidence            9999999987666666666665

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG4222|consensus

Probab=99.03  E-value=2e-09  Score=74.79  Aligned_cols=106  Identities=24%  Similarity=0.343  Sum_probs=70.7

Q ss_pred             eeccCCccEEEEEEe-eecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE-E
Q psy12132          3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-F   78 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~   78 (126)
                      +.+..|+.++|-|.. .+.|.|.+.|.|++..+...  ........|   .|.|.++.+.|.|+|.|.+.|..|.... .
T Consensus       141 ~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~  217 (1281)
T KOG4222|consen  141 VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNMVGERESIP  217 (1281)
T ss_pred             ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC---cEEEeccccCCCceeeeeeccccccccccc
Confidence            456779999999985 78899999999999887632  333334444   7999999999999999999998876632 3


Q ss_pred             EEEEecCCCCeeccC---cceeCCCeeEEEEEEccCC
Q psy12132         79 IQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        79 ~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  112 (126)
                      ..+.+... |.+...   .....+..+.+.|.+.|.+
T Consensus       218 A~lsv~e~-P~f~~rp~~~~v~~g~~~~f~c~v~GdP  253 (1281)
T KOG4222|consen  218 ARLSVQEK-PWFWKRPKDLAVLVGAAAEFDCRVGGDP  253 (1281)
T ss_pred             ceeeeccC-CccccccccceeecccccccccccCCCC
Confidence            34444322 222221   1122334456666554443

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.03  E-value=1.1e-08  Score=51.11  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             EEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEec---CCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132         11 AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus        11 ~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      +.|.|.. .+.|++.++|+++++.+..... ....+   .....|.+.....+|.+.|+|.+.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            6899997 4678889999999998853211 00000   01236888888888899999999997654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.00  E-value=1.6e-08  Score=53.46  Aligned_cols=77  Identities=18%  Similarity=0.425  Sum_probs=52.7

Q ss_pred             CCccEEEEEEeeecC------CCeeEEEECCE------E--ecc----------CCcEEEEec-CCeEEEEEecCCCCCC
Q psy12132          7 PDMRAEIICNVYANP------PAKVEWFRDGT------A--ITL----------GGRIDMHVS-SEKHSLLVRHIKDTDF   61 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p------~~~~~w~~~~~------~--~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~   61 (126)
                      .|++++|.|.....|      ...+.|++...      .  +..          ..++.+... ....+|.|.+++..|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999987553      34699998531      1  110          123333221 2356899999999999


Q ss_pred             EEEEEEEecCCceeEEEEEEEe
Q psy12132         62 GNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        62 g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      |.|.|.+.+..+.....+.|.|
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v  102 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRL  102 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEE
Confidence            9999999887776677766664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.98  E-value=2.9e-08  Score=52.84  Aligned_cols=77  Identities=17%  Similarity=0.391  Sum_probs=51.8

Q ss_pred             CCccEEEEEEeeecC----------CCeeEEEECC--EE---e-cc----------CCcEEEE---ecCCeEEEEEecCC
Q psy12132          7 PDMRAEIICNVYANP----------PAKVEWFRDG--TA---I-TL----------GGRIDMH---VSSEKHSLLVRHIK   57 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p----------~~~~~w~~~~--~~---~-~~----------~~~~~~~---~~~~~~~l~i~~~~   57 (126)
                      .|++++|+|.....+          ...+.|++..  ..   + ..          ..|+.+.   .....+.|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999986543          2569999842  11   1 00          1233332   12345789999999


Q ss_pred             CCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         58 DTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        58 ~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      ..|.|.|.|.+..........+.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence            99999999998876555666666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.97  E-value=1.3e-08  Score=52.39  Aligned_cols=63  Identities=17%  Similarity=0.338  Sum_probs=44.8

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEec------------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAIT------------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~------------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      |++++|.|.........+.|++......                  ...+..+..   +.+|.|.+++..|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP---NGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC---CceEEEccCCchhcEEEEEEEE
Confidence            7899999988765566899998642210                  012222222   3589999999999999999988


Q ss_pred             cCCc
Q psy12132         70 NNLG   73 (126)
Q Consensus        70 ~~~~   73 (126)
                      ...+
T Consensus        78 ~~~~   81 (92)
T cd05741          78 STNG   81 (92)
T ss_pred             cCCC
Confidence            7653

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.97  E-value=1.6e-08  Score=55.97  Aligned_cols=74  Identities=22%  Similarity=0.241  Sum_probs=51.4

Q ss_pred             EEEEecCCCCCCEEEEEEEecCCceeEEEEEEEecCCCCeeccCc--ceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS--RRLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        50 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      +|.|.+++..|.|.|.|.+.+..+.....+.|.+...|.+.....  ....+..+.|+|.+.+..|.. ..+.|++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~-~~i~W~~~   77 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLD-VQVEWTRE   77 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCC-eEEEEEEC
Confidence            689999999999999999998777777777777754443322221  112456789999998875532 24555543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.96  E-value=1.7e-08  Score=53.72  Aligned_cols=69  Identities=17%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCE--E---ec-------------cCCcEEEEecC-CeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT--A---IT-------------LGGRIDMHVSS-EKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~--~---~~-------------~~~~~~~~~~~-~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|++++|.|.+.+ +.+.+.|++...  .   +.             ...++...... ....|.|.+++..|+|
T Consensus         7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg   85 (110)
T cd05899           7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA   85 (110)
T ss_pred             ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence            357889999999999976 677899998531  1   10             01344433322 3568999999999999


Q ss_pred             EEEEEEecC
Q psy12132         63 NYMCQASNN   71 (126)
Q Consensus        63 ~y~C~~~~~   71 (126)
                      .|.|.+.+.
T Consensus        86 ~Y~Ca~~~~   94 (110)
T cd05899          86 VYLCASSLG   94 (110)
T ss_pred             EEEEEeeCC
Confidence            999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.95  E-value=4.9e-08  Score=52.34  Aligned_cols=72  Identities=15%  Similarity=0.342  Sum_probs=49.2

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEE---------------CCEEeccC-----CcEEEEec--CCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFR---------------DGTAITLG-----GRIDMHVS--SEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~---------------~~~~~~~~-----~~~~~~~~--~~~~~l~i~~   55 (126)
                      .+.+..|+++.|.|......    ...+.|.+               ++......     .|..+..+  ..+.++.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            46778899999999986532    34799933               23322110     24433322  2457999999


Q ss_pred             CCCCCCEEEEEEEecCCc
Q psy12132         56 IKDTDFGNYMCQASNNLG   73 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~   73 (126)
                      ++..|.|.|+|.+.|..+
T Consensus        87 v~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             CCcccCEEEEEEEEcCCC
Confidence            999999999999998644

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.95  E-value=3.2e-08  Score=51.46  Aligned_cols=75  Identities=23%  Similarity=0.414  Sum_probs=49.5

Q ss_pred             ccEEEEEEeeecC---CCeeEEEECCE----Ee---c--------c--CCcEEEEecC-CeEEEEEecCCCCCCEEEEEE
Q psy12132          9 MRAEIICNVYANP---PAKVEWFRDGT----AI---T--------L--GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         9 ~~~~l~C~~~~~p---~~~~~w~~~~~----~~---~--------~--~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +++.|.|.....+   ...+.|+|...    .+   .        .  ..+..+.... ...+|.|.++...|.|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999987544   33799998532    11   0        0  1122222111 356899999999999999999


Q ss_pred             Eec-CCceeEEEEEEEe
Q psy12132         68 ASN-NLGSSQQFIQLSG   83 (126)
Q Consensus        68 ~~~-~~~~~~~~~~l~~   83 (126)
                      +.. ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            874 5677777776664

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.94  E-value=1.4e-08  Score=53.66  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=48.7

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +.+.+|+++.|.|.+.+.. ...+.|++..  .   .+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca   89 (106)
T cd04980          10 LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQ   89 (106)
T ss_pred             EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEE
Confidence            5678899999999987555 5679998742  1   111         01244443334456899999999999999998


Q ss_pred             Eec
Q psy12132         68 ASN   70 (126)
Q Consensus        68 ~~~   70 (126)
                      +.+
T Consensus        90 ~~~   92 (106)
T cd04980          90 QYG   92 (106)
T ss_pred             EeC
Confidence            764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.94  E-value=1.6e-08  Score=54.27  Aligned_cols=68  Identities=16%  Similarity=0.398  Sum_probs=50.2

Q ss_pred             eeccCCccEEEEEEeee--cCCCeeEEEEC--CEE---ec--------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYA--NPPAKVEWFRD--GTA---IT--------------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~--~p~~~~~w~~~--~~~---~~--------------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+.+  .+.+.+.|++.  +..   +.              ...++.+....  ....|.|.+++..
T Consensus         8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   87 (116)
T cd04982           8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE   87 (116)
T ss_pred             EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence            56778999999999876  56778999984  211   10              12455554444  4578999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |+|.|.|.+..
T Consensus        88 Dsg~Y~C~~~~   98 (116)
T cd04982          88 DSATYYCAYWE   98 (116)
T ss_pred             HCEEEEEEEec
Confidence            99999998764

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.92  E-value=5.7e-09  Score=53.67  Aligned_cols=65  Identities=14%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..+..|++++|.|... .+...+.|+++|...... .  ....+....+.|.++...|.|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3567899999999886 667789999988643211 0  111223457999999999999999998775

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA03376 BARF1; Provisional

Probab=98.92  E-value=1.7e-07  Score=53.53  Aligned_cols=70  Identities=21%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             eeccCCccEEEEEEeeec---CCCeeEEEEC----CEEe-c------------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYAN---PPAKVEWFRD----GTAI-T------------LGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~---p~~~~~w~~~----~~~~-~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      +....|+++.|+|.....   +...+.|+|.    ...+ .            ...++.+..+.++.+|.|.+++..|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            567789999999987521   2346899994    2221 1            012333333345678999999999999


Q ss_pred             EEEEEEecCC
Q psy12132         63 NYMCQASNNL   72 (126)
Q Consensus        63 ~y~C~~~~~~   72 (126)
                      .|.|.+....
T Consensus       101 tY~C~fQkge  110 (221)
T PHA03376        101 NYLCRMKLGE  110 (221)
T ss_pred             eEEEEEEcCC
Confidence            9999988643

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.90  E-value=2.8e-08  Score=51.70  Aligned_cols=78  Identities=14%  Similarity=0.157  Sum_probs=50.3

Q ss_pred             cCCccEEEEEEeee-cCCCeeEEEECCEEec-cC------------CcE--EEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          6 APDMRAEIICNVYA-NPPAKVEWFRDGTAIT-LG------------GRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         6 ~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~-~~------------~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ..|++++|.|.... .....+.|++....+. ..            ..+  +........+|.|.+++..|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46999999998753 3345789998643221 10            111  11222335789999999999999999988


Q ss_pred             cCCcee-EEEEEEEe
Q psy12132         70 NNLGSS-QQFIQLSG   83 (126)
Q Consensus        70 ~~~~~~-~~~~~l~~   83 (126)
                      ...+.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            765433 44555543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.89  E-value=3.3e-08  Score=51.53  Aligned_cols=67  Identities=21%  Similarity=0.393  Sum_probs=48.7

Q ss_pred             eccCCccEEEEEEeeec--CCCeeEEEECCE--E---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYAN--PPAKVEWFRDGT--A---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~--p~~~~~w~~~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+|+++.|.|.....  ....+.|++...  .   +.         ...++..........|.|.+++..|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57889999999998654  456799987431  1   11         01355555555567899999999999999998


Q ss_pred             Eec
Q psy12132         68 ASN   70 (126)
Q Consensus        68 ~~~   70 (126)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG4222|consensus

Probab=98.87  E-value=9e-09  Score=71.72  Aligned_cols=111  Identities=18%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +..+..|..+.+.|.+.|.|.|++.|.+.+..+.. .++.+..+  ..++.|.++...|.|.|.|.+.|..|...+...+
T Consensus       234 ~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~l  310 (1281)
T KOG4222|consen  234 DLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR-SRYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATL  310 (1281)
T ss_pred             cceeecccccccccccCCCCCCceeeeccCCCCCc-cceeeeec--cccccccccCCCcccceeeeccccccccccccce
Confidence            35677888899999999999999999996655543 45555443  1379999999999999999999999888877777


Q ss_pred             EecCCCCeeccC--cceeCCCeeEEEEEEccCCcce
Q psy12132         82 SGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSAII  115 (126)
Q Consensus        82 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~  115 (126)
                      .|...|..-...  .....+..+.+.|+..|.++..
T Consensus       311 tV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pa  346 (1281)
T KOG4222|consen  311 TVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPA  346 (1281)
T ss_pred             EEecCcccccccCccccccCceEEeeeecCCCCCcc
Confidence            776444433332  2233455788899887776544

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.83  E-value=4e-07  Score=48.67  Aligned_cols=76  Identities=20%  Similarity=0.416  Sum_probs=51.4

Q ss_pred             CccEEEEEEeeecC-----------CCeeEEEEC-----C-----EEe--cc----------CCcEEEEec---CCeEEE
Q psy12132          8 DMRAEIICNVYANP-----------PAKVEWFRD-----G-----TAI--TL----------GGRIDMHVS---SEKHSL   51 (126)
Q Consensus         8 g~~~~l~C~~~~~p-----------~~~~~w~~~-----~-----~~~--~~----------~~~~~~~~~---~~~~~l   51 (126)
                      |.+++|+|.....|           ...+.|.+-     +     ..+  ..          ..|..+...   .++++|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999997443           127999873     1     111  11          123333222   246799


Q ss_pred             EEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         52 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        52 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      .|.+++..|.|.|.|.+..........+.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            99999999999999999887666666666664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.81  E-value=1.1e-08  Score=50.31  Aligned_cols=57  Identities=25%  Similarity=0.590  Sum_probs=39.1

Q ss_pred             EEEEEEeeecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132         11 AEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus        11 ~~l~C~~~~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +.|.|.+.+.+ .+.+.|+..........   .........|.+.++..+|.|.|+|.+.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYDSNPSFNSNS---RGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEETEEEEEEEEE---EEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEecCCceeeee---eeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999998777 77899981111111111   11122345899999999999999999875

...

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.79  E-value=1.4e-07  Score=50.59  Aligned_cols=72  Identities=19%  Similarity=0.365  Sum_probs=47.4

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEEC----CE--Ee-c--------cC----CcEEEEe--cCCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRD----GT--AI-T--------LG----GRIDMHV--SSEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~----~~--~~-~--------~~----~~~~~~~--~~~~~~l~i~~~   56 (126)
                      .+.+..|+++.|.|.....+    ...+.|++.    +.  .+ .        ..    .+..+..  ...+++|.|.++
T Consensus         7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v   86 (115)
T cd05880           7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL   86 (115)
T ss_pred             eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence            46788999999999986433    236999742    11  11 0        01    1222111  123568999999


Q ss_pred             CCCCCEEEEEEEecCCc
Q psy12132         57 KDTDFGNYMCQASNNLG   73 (126)
Q Consensus        57 ~~~d~g~y~C~~~~~~~   73 (126)
                      +..|.|.|.|.+.+..+
T Consensus        87 ~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          87 QPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             ChhhCEEEEEEEEeCCC
Confidence            99999999999987543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.78  E-value=2.7e-07  Score=52.70  Aligned_cols=83  Identities=16%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECCEEec----------c--CCcEEE-EecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAIT----------L--GGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~----------~--~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|... +...+.++|.|....+.          .  ..|+.+ ...-....+.|.++..+|.|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            35788999999999984 54577899998632221          0  124442 2333456899999999999999998


Q ss_pred             Eec-CCc-eeEEEEEEEec
Q psy12132         68 ASN-NLG-SSQQFIQLSGI   84 (126)
Q Consensus        68 ~~~-~~~-~~~~~~~l~~~   84 (126)
                      +.. ..| ..+...-|.+.
T Consensus       104 F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEecCCCCCceeEEEEEEE
Confidence            764 445 55666666654

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.77  E-value=3.4e-07  Score=48.61  Aligned_cols=77  Identities=17%  Similarity=0.314  Sum_probs=51.4

Q ss_pred             CCccEEEEEEeeecC-------CCeeEEEECC-----EEe--c--c----------CCcEEEEec---CCeEEEEEecCC
Q psy12132          7 PDMRAEIICNVYANP-------PAKVEWFRDG-----TAI--T--L----------GGRIDMHVS---SEKHSLLVRHIK   57 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p-------~~~~~w~~~~-----~~~--~--~----------~~~~~~~~~---~~~~~l~i~~~~   57 (126)
                      .|+++.|+|...-.|       .+.+.|.+..     ...  .  .          ..|..+...   ..+++|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            377899999975332       3579998741     111  0  1          124444321   246799999999


Q ss_pred             CCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         58 DTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        58 ~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      ..|.|.|.|.+..........+.|.|
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEE
Confidence            99999999999886555566666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.75  E-value=4.7e-07  Score=48.63  Aligned_cols=71  Identities=17%  Similarity=0.334  Sum_probs=46.5

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEECC------EEe-c---------cC----CcEEEEec--CCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG------TAI-T---------LG----GRIDMHVS--SEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~------~~~-~---------~~----~~~~~~~~--~~~~~l~i~~   55 (126)
                      .+.+..|++++|.|......    ...+.|++..      ..+ .         ..    .|+.+...  ..+++|.|.+
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN   86 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence            35678899999999886432    2469997632      111 0         01    12222211  2347899999


Q ss_pred             CCCCCCEEEEEEEecCC
Q psy12132         56 IKDTDFGNYMCQASNNL   72 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~   72 (126)
                      ++..|.|.|.|.+.+..
T Consensus        87 v~~~D~G~Y~C~v~~~~  103 (116)
T cd05715          87 LQFTDNGTYTCDVKNPP  103 (116)
T ss_pred             CCcccCEEEEEEEEeCC
Confidence            99999999999988754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.74  E-value=5.1e-07  Score=47.22  Aligned_cols=74  Identities=22%  Similarity=0.475  Sum_probs=48.1

Q ss_pred             cEEEEEEeeecC---CCeeEEEECCE-----Ee---cc--C--------CcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132         10 RAEIICNVYANP---PAKVEWFRDGT-----AI---TL--G--------GRIDMHV--SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus        10 ~~~l~C~~~~~p---~~~~~w~~~~~-----~~---~~--~--------~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      ++.|.|......   ...+.|++...     .+   ..  +        .+..+..  ...+..|.|.+++..|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999986443   33789998321     11   10  0        2333332  2235689999999999999999


Q ss_pred             EEec-CCceeEEEEEEEe
Q psy12132         67 QASN-NLGSSQQFIQLSG   83 (126)
Q Consensus        67 ~~~~-~~~~~~~~~~l~~   83 (126)
                      .+.+ ..|...+.+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9886 5565566655554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.73  E-value=8.7e-07  Score=46.23  Aligned_cols=74  Identities=19%  Similarity=0.403  Sum_probs=48.9

Q ss_pred             cEEEEEEeeec-CCC---eeEEEECC----EEec--c-----------CCcEEEEe-cCCeEEEEEecCCCCCCEEEEEE
Q psy12132         10 RAEIICNVYAN-PPA---KVEWFRDG----TAIT--L-----------GGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus        10 ~~~l~C~~~~~-p~~---~~~w~~~~----~~~~--~-----------~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.|.|..... |..   .++|.+..    ..+.  .           .+|..+.. ...+++|.|.+++..|.|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68999998742 212   59998731    1111  1           12333221 11357899999999999999999


Q ss_pred             Eec-CCceeEEEEEEEe
Q psy12132         68 ASN-NLGSSQQFIQLSG   83 (126)
Q Consensus        68 ~~~-~~~~~~~~~~l~~   83 (126)
                      +.+ ..|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            998 6777777777765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.73  E-value=5.2e-07  Score=45.43  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      -.+..|++++|.|.....+.|  .++|...+.....      .......+|.+..+...|+|.++|.+....-...+.+.
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            356789999999998654555  8999764322110      01112237999999999999999999755434444554


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      +.|
T Consensus        83 V~V   85 (88)
T cd07694          83 IKV   85 (88)
T ss_pred             EEE
Confidence            443

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG4194|consensus

Probab=98.72  E-value=5e-08  Score=64.69  Aligned_cols=82  Identities=23%  Similarity=0.397  Sum_probs=64.5

Q ss_pred             ceeccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +..+..|+++.++|.+.+.|. |++.|+|+++++....+..+..  ++..+.+......|.|.|+|...+..|.....+.
T Consensus       715 ~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~  792 (873)
T KOG4194|consen  715 DQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHIC  792 (873)
T ss_pred             ceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEeeccceeeEEE
Confidence            456788999999999998887 9999999888776544333222  2347888888899999999999999888877777


Q ss_pred             EEecC
Q psy12132         81 LSGIP   85 (126)
Q Consensus        81 l~~~~   85 (126)
                      +.+..
T Consensus       793 l~~~~  797 (873)
T KOG4194|consen  793 LLVYQ  797 (873)
T ss_pred             EEEee
Confidence            66543

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.72  E-value=4.4e-07  Score=48.19  Aligned_cols=70  Identities=21%  Similarity=0.484  Sum_probs=49.6

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECCE-----Eec--------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGT-----AIT--------------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~-----~~~--------------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      .+.+.+|+++.|.|... ......+.|++...     .+.              ...++.+..+.  ....|.|.+++..
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~   89 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS   89 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence            35678899999999998 44556899987321     111              01233333332  3578999999999


Q ss_pred             CCEEEEEEEecC
Q psy12132         60 DFGNYMCQASNN   71 (126)
Q Consensus        60 d~g~y~C~~~~~   71 (126)
                      |.|.|.|.+...
T Consensus        90 DsG~Y~C~v~~~  101 (114)
T PF07686_consen   90 DSGTYFCQVSTS  101 (114)
T ss_dssp             GEEEEEEEEEES
T ss_pred             cCEEEEEEEEEC
Confidence            999999998875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.69  E-value=1.5e-07  Score=48.63  Aligned_cols=67  Identities=12%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ..+..|++++|.|.... ..-.+.|+|++..............+..+.+.|..++..|.|.|.|....
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            35678999999998763 45679999987542110000001122345789999999999999998653

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.66  E-value=2.8e-07  Score=47.64  Aligned_cols=66  Identities=17%  Similarity=0.268  Sum_probs=44.0

Q ss_pred             CCccEEEEEEeeec-C-CCeeEEEECCEEeccCCc-EEE--EecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGGR-IDM--HVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~~-~~~--~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .|+.+.|.|.+.+. | ...++|++++..+..... ...  ..++..   +.|.+......+.+.|+|.+.+..
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            57899999999987 5 358999999987754332 111  122221   235555544458899999998764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.64  E-value=6.5e-07  Score=48.07  Aligned_cols=69  Identities=14%  Similarity=0.301  Sum_probs=49.1

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECC--EE---ec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDG--TA---IT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~--~~---~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y   64 (126)
                      .+.+..|+++.|.|..... ....+.|++..  ..   +.         ...++.+..  ......|.|.+++..|+|.|
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y   87 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY   87 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            4567899999999998643 45579999832  11   11         124555542  23467899999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|.+..
T Consensus        88 ~C~~~~   93 (116)
T cd07706          88 FCALST   93 (116)
T ss_pred             EEEEEC
Confidence            998875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.63  E-value=6.9e-07  Score=46.45  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CccEEEEEEeeecCC-CeeEEEECCE----Eec---c----------CCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          8 DMRAEIICNVYANPP-AKVEWFRDGT----AIT---L----------GGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         8 g~~~~l~C~~~~~p~-~~~~w~~~~~----~~~---~----------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      |++++|.|....... ..+.|++...    .+.   .          ..+..+. .....++|.|.+++..|.|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998753332 2689987421    111   0          0122221 1224578999999999999999997


Q ss_pred             ec-CCceeEEEEEEEe
Q psy12132         69 SN-NLGSSQQFIQLSG   83 (126)
Q Consensus        69 ~~-~~~~~~~~~~l~~   83 (126)
                      .. ..|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            64 4566666655554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.63  E-value=1.9e-06  Score=44.68  Aligned_cols=75  Identities=19%  Similarity=0.399  Sum_probs=50.0

Q ss_pred             ccEEEEEEeeecC-CCeeEEEECC----EEec--c-----------CCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          9 MRAEIICNVYANP-PAKVEWFRDG----TAIT--L-----------GGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         9 ~~~~l~C~~~~~p-~~~~~w~~~~----~~~~--~-----------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      +++.|.|.....+ ...++|.|..    ..+.  .           ..|..+. ....+.+|.|.++...|.|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4689999986322 3379998732    1221  0           1233332 12235799999999999999999976


Q ss_pred             -cCCceeEEEEEEEe
Q psy12132         70 -NNLGSSQQFIQLSG   83 (126)
Q Consensus        70 -~~~~~~~~~~~l~~   83 (126)
                       ...|...+...|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             46777787777764

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.62  E-value=5.7e-07  Score=46.80  Aligned_cols=69  Identities=17%  Similarity=0.344  Sum_probs=48.5

Q ss_pred             eeccCCccEEEEEEeee-cCCCeeEEEECCE-----Ee--------ccCCcEEEEec--CCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYA-NPPAKVEWFRDGT-----AI--------TLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~-----~~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|.... .....+.|++...     .+        ....++.+...  .....|.|.+++..|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46788999999999764 3456789987531     11        01234544322  345789999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+...
T Consensus        82 ~~~~~   86 (98)
T cd05716          82 GVGDD   86 (98)
T ss_pred             EcccC
Confidence            87764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.61  E-value=5.5e-07  Score=47.68  Aligned_cols=68  Identities=16%  Similarity=0.378  Sum_probs=46.0

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEECCEE--------e--cc------------CCcEEEE--ecCCeEEEEEecCC
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFRDGTA--------I--TL------------GGRIDMH--VSSEKHSLLVRHIK   57 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~--------~--~~------------~~~~~~~--~~~~~~~l~i~~~~   57 (126)
                      +.+.+|++++|.|...... ...+.|++....        +  ..            ..++...  .......|.|.+++
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            3578899999999986533 457999984321        0  00            1244332  22234679999999


Q ss_pred             CCCCEEEEEEEec
Q psy12132         58 DTDFGNYMCQASN   70 (126)
Q Consensus        58 ~~d~g~y~C~~~~   70 (126)
                      .+|+|.|.|....
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.58  E-value=1e-06  Score=47.57  Aligned_cols=70  Identities=16%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             ceeccCCccEEEEEEeeecC------CCeeEEEECCE-----E-e--cc---------CCcEEEE--ecCCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANP------PAKVEWFRDGT-----A-I--TL---------GGRIDMH--VSSEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p------~~~~~w~~~~~-----~-~--~~---------~~~~~~~--~~~~~~~l~i~~~   56 (126)
                      .+.+.+|++++|.|......      ...+.|++...     . +  ..         ..++...  .....+.|.|.++
T Consensus         8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l   87 (119)
T cd05712           8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA   87 (119)
T ss_pred             EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence            46788899999999875221      24589998531     1 1  00         1244442  1334678999999


Q ss_pred             CCCCCEEEEEEEecC
Q psy12132         57 KDTDFGNYMCQASNN   71 (126)
Q Consensus        57 ~~~d~g~y~C~~~~~   71 (126)
                      +..|+|.|.|.+...
T Consensus        88 ~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          88 QPEDSGKYFFRVELG  102 (119)
T ss_pred             ChhhCeEEEEEEEcC
Confidence            999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.56  E-value=9.9e-07  Score=46.47  Aligned_cols=67  Identities=18%  Similarity=0.387  Sum_probs=45.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCE----E---ec---c------------CCcEEEEecCCeEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGT----A---IT---L------------GGRIDMHVSSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~----~---~~---~------------~~~~~~~~~~~~~~l~i~~~~~~d~   61 (126)
                      .+.+|++++|.|.........+.|++...    .   +.   .            ..++..........|.|.+++..|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            36789999999998644456799998431    1   11   0            1123332333456899999999999


Q ss_pred             EEEEEEEec
Q psy12132         62 GNYMCQASN   70 (126)
Q Consensus        62 g~y~C~~~~   70 (126)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998653

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.55  E-value=2.5e-06  Score=43.07  Aligned_cols=61  Identities=13%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             EEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCC------eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132         11 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus        11 ~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.|.|.+.+. |.+.++|++++..+..... .....+.      ...+.+......+...|+|.+.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            6799999764 7889999999987654321 2222211      1244454444556678999998864

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.51  E-value=2e-06  Score=43.31  Aligned_cols=63  Identities=16%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             EEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCC----eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132         11 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus        11 ~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      +.|.|.+.+. |.+.+.|++++..+...........++    ...|.+......+.+.|+|.+.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            6799999654 788999999998775322111111111    12344444444455689999988643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd00096 Ig Immunoglobulin domain

Probab=98.49  E-value=2.8e-06  Score=40.56  Aligned_cols=62  Identities=24%  Similarity=0.500  Sum_probs=43.3

Q ss_pred             EEEEEEeeecCCCeeEEEECCEEeccCCcE----EEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132         11 AEIICNVYANPPAKVEWFRDGTAITLGGRI----DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus        11 ~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.|.|.+.+.+...+.|++++.........    ..........+.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468899987677899999987654332210    01111234579999999999999999988764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.46  E-value=5.8e-06  Score=41.74  Aligned_cols=62  Identities=16%  Similarity=0.336  Sum_probs=38.3

Q ss_pred             EEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEe-c-C---CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132         11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV-S-S---EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus        11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~-~-~---~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.|.|.+.+ .|...++|++++..+.......... . +   ..+.|.+......+-..|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            678999976 5667899999998864322111111 1 1   12355555444445558999998754

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.45  E-value=3.3e-06  Score=44.00  Aligned_cols=68  Identities=15%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             eccCCccEEEEEEeee-cCCCe--eEEEECCEEeccCCcEEE---EecCCeEEEEEecCCCCCCE-EEEEEEecCCc
Q psy12132          4 ITAPDMRAEIICNVYA-NPPAK--VEWFRDGTAITLGGRIDM---HVSSEKHSLLVRHIKDTDFG-NYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~-~p~~~--~~w~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~   73 (126)
                      .+.+|+.++|.|.+.+ .|.+.  +.|++++..+.... +..   .......++.+... +.|.| .|+|.+.+...
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP-FGDNTKSPVNAPATITITVD-REDHGANFSCETELDLR   86 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce-eccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccC
Confidence            4678999999999975 45555  79999998875321 111   01112335666544 55555 89999987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.37  E-value=8.9e-06  Score=40.84  Aligned_cols=62  Identities=19%  Similarity=0.403  Sum_probs=40.3

Q ss_pred             EEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEe-cC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132         11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV-SS--EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus        11 ~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.|.|.+.| .|.+.++|++++..+.......... .+  ..+.|.+..-..+|-..|+|.+.+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            678999864 5677999999998875432211111 11  23467775555555558999998864

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.36  E-value=5.5e-06  Score=41.26  Aligned_cols=59  Identities=20%  Similarity=0.442  Sum_probs=39.5

Q ss_pred             cEEEEEEeeecCCC--eeEEEECCE-----Eec-------------cCCcEEEEec--CCeEEEEEecCCCCCCEEEEEE
Q psy12132         10 RAEIICNVYANPPA--KVEWFRDGT-----AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus        10 ~~~l~C~~~~~p~~--~~~w~~~~~-----~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.|.|.+.....+  .+.|++...     .+.             ...++.+...  .....|.|.+++..|.|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998755443  789987431     111             1234444433  4457899999999999999996


Q ss_pred             E
Q psy12132         68 A   68 (126)
Q Consensus        68 ~   68 (126)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.35  E-value=3.8e-05  Score=39.86  Aligned_cols=73  Identities=23%  Similarity=0.397  Sum_probs=46.4

Q ss_pred             ccEEEEEEeeec-CCCeeEEEECCE----Eecc-------------CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          9 MRAEIICNVYAN-PPAKVEWFRDGT----AITL-------------GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         9 ~~~~l~C~~~~~-p~~~~~w~~~~~----~~~~-------------~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++++|.|..... ....++|.|...    .+..             ..|..+... ..+.+|.|.++...|.|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468999997532 244788987421    1110             123333211 134689999999999999999987


Q ss_pred             c-CCceeEEEEEE
Q psy12132         70 N-NLGSSQQFIQL   81 (126)
Q Consensus        70 ~-~~~~~~~~~~l   81 (126)
                      . ..|...+.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            5 46666666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.27  E-value=6.2e-05  Score=38.91  Aligned_cols=67  Identities=18%  Similarity=0.376  Sum_probs=37.5

Q ss_pred             cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCc-EEEEecC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-IDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~-~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ..++.++|.|.+.+.-++  .+.|++++..+..... .....++  .........+...+...|+|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            357889999999875433  7899999987654311 1111111  11122222233344457888777643

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.26  E-value=2.9e-05  Score=40.03  Aligned_cols=65  Identities=18%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.+.|.|.+.|..++  .+.|.+++..+....   ......++.........+...+...|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6789999999985443  889999985332211   1111122222233334444456778999887653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.24  E-value=2e-05  Score=42.41  Aligned_cols=68  Identities=18%  Similarity=0.384  Sum_probs=45.8

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECC--E-E--e---c-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDG--T-A--I---T-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~-~--~---~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      +.+.+|++++|.|......  ...+.|++..  . +  +   .           ...++......  ....|.|.+++..
T Consensus         7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (117)
T cd04981           7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE   86 (117)
T ss_pred             eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence            5678899999999875432  4568998742  1 1  1   0           01344443332  2357999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |+|.|.|....
T Consensus        87 Dsa~YyCa~~~   97 (117)
T cd04981          87 DTAVYYCARGL   97 (117)
T ss_pred             HCEEEEEEEEc
Confidence            99999997654

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.24  E-value=8.6e-05  Score=39.59  Aligned_cols=65  Identities=14%  Similarity=0.437  Sum_probs=39.4

Q ss_pred             cCCccEEEEEEeeec-CC-CeeEEEECCEEeccCCcEEEEecCC------eEEEEEecCCCCCCE-EEEEEEecCC
Q psy12132          6 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFG-NYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g-~y~C~~~~~~   72 (126)
                      ..|+.++|.|.+.+. |. ..++|++||..+..... ....++.      .+.|.+.. ...|.+ .|+|.+....
T Consensus        19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            457789999999765 43 48999999988753221 1111111      12344443 334433 5999988754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.13  E-value=8.6e-05  Score=37.82  Aligned_cols=66  Identities=15%  Similarity=0.349  Sum_probs=40.3

Q ss_pred             CccEEEEEEe-eecCCCeeEEEECCEEeccCC-cEEEEecCC----eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          8 DMRAEIICNV-YANPPAKVEWFRDGTAITLGG-RIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         8 g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      |+.+.+.|.+ .+.|.+.+.|+.++..+.... .........    .+.|.+..-..++...++|.+.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            6789999976 577889999999886651111 111111111    13566655544556689999988653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.12  E-value=0.00018  Score=37.13  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             CCccEEEEEEeeecCCC--eeEEEECCEEeccCCc-EEEEe--cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          7 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-IDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .|+...|.|.+.+.-++  .++|.++|..+. +.. .....  ++.........+...+...|+|.+...
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            35567899999875443  689999998765 311 11112  222222222233445666799988764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.08  E-value=0.00012  Score=36.09  Aligned_cols=61  Identities=28%  Similarity=0.473  Sum_probs=36.1

Q ss_pred             EEEEEEeeec-CC-CeeEEEECCEEeccCCcE-EEE--ecCC---eEEEEEecCCCCCCEEEEEEEecC
Q psy12132         11 AEIICNVYAN-PP-AKVEWFRDGTAITLGGRI-DMH--VSSE---KHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus        11 ~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~-~~~--~~~~---~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +.|.|.+.+. |. ..+.|++++..+..+... ...  .++.   .+.|.+......+...|+|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            6799999876 33 489999999864322110 111  1221   124555444555666899988764

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.00  E-value=0.00023  Score=36.78  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=34.7

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccCCcE-EE--EecCCe---EEEEEecCCCCCCEEEEEEEecC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI-DM--HVSSEK---HSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~-~~--~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++..+|.|.+.|.-+  ..+.|.++|..+..+... ..  ..++..   ..|.+.   ..+...|+|.+...
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            455799999987533  378999999876432111 11  111211   233333   23444788887764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.00  E-value=0.00028  Score=39.10  Aligned_cols=66  Identities=18%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             CCccEEEEEEeeec-CC-CeeEEEECCEEecc-----CC----cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITL-----GG----RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~-----~~----~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .|+.+.|.|.+.+. |. +.+.|++++.....     ..    ......++.   .+.|.+......+.+.|+|.+.+..
T Consensus        52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            57789999999885 43 48999998743110     11    011111221   1345555444444558999987753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG3515|consensus

Probab=97.99  E-value=4.6e-05  Score=52.40  Aligned_cols=100  Identities=16%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             eccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l   81 (126)
                      .+..|+++.|.|.+.++|++ .+.|++++....  .+.....+   ..|......++..+.|.|.+.|..+.. ++...+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l   92 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIAD---PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL   92 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccccC---CceeeecchhhhhhhhhhhhcccccCceecceee
Confidence            46789999999999877654 799999876544  33322222   268888888888889999999875433 334444


Q ss_pred             EecCCCCeecc--CcceeCCCeeEEEEEE
Q psy12132         82 SGIPNIPVFQK--SSRRLGPDGYRLVWQV  108 (126)
Q Consensus        82 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~  108 (126)
                      .+.-.+.-...  .........+.+.|..
T Consensus        93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~  121 (741)
T KOG3515|consen   93 DVDYPPACLPELGEIFQVDKGVVQIICSA  121 (741)
T ss_pred             ccccCccccccccchhhhcCCeEEEEEee
Confidence            43222211111  2223345567888844

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.90  E-value=0.00031  Score=35.36  Aligned_cols=64  Identities=20%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEE-EE--ecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID-MH--VSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~-~~--~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ..++.+.|.|.+.+.-+.  .+.|.+++..+....... ..  .++..   +.|.+.   ..+...|+|.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            347889999999865333  799999998765432211 11  12221   234444   344447999887654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.81  E-value=0.00082  Score=34.90  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             cCCccEEEEEEeeec-CCC--eeEEEECCE
Q psy12132          6 APDMRAEIICNVYAN-PPA--KVEWFRDGT   32 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p~~--~~~w~~~~~   32 (126)
                      ..++.++|.|.+.+. -++  .++|.+++.
T Consensus        12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             ccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            357889999999887 333  689999864

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.75  E-value=0.00032  Score=36.67  Aligned_cols=66  Identities=18%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             CCccEEEEEEeeec-C-CCeeEEEECCEEeccCC---cEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGG---RIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~---~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++.++|.|.+.+. | ...+.|+++|..+..+.   ......++..   +.|.+..-.-.+...|+|.+....
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            46679999999874 3 34789999998764221   1011112221   233333322223457999887653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.68  E-value=0.0011  Score=34.24  Aligned_cols=65  Identities=22%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+.+.|.|.+.+.-+  ..+.|.+++..+....   ......++.   .+.|.+..-.-.+...|+|.+....
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            456899999987533  4789999998753221   111111121   1234443332234457999988754

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.65  E-value=0.0011  Score=34.80  Aligned_cols=29  Identities=24%  Similarity=0.571  Sum_probs=23.1

Q ss_pred             CCccEEEEEEeeecCCC--eeEEEECCEEec
Q psy12132          7 PDMRAEIICNVYANPPA--KVEWFRDGTAIT   35 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~   35 (126)
                      .++.++|.|.+.|..++  .+.|.+++..+.
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            46789999999875444  679999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.61  E-value=0.0012  Score=34.28  Aligned_cols=28  Identities=14%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEec
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAIT   35 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~   35 (126)
                      +..++|.|.+.+.-++  .++|.++|..+.
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            4568999999875433  689999998754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.53  E-value=0.00041  Score=33.09  Aligned_cols=53  Identities=15%  Similarity=0.344  Sum_probs=33.8

Q ss_pred             ccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ...|.+|+|+|....   ..+.|.+++..+.....          .+...+-. .+.|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCC---CCceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence            456889999997652   22999998855432211          12222333 7899999988643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.47  E-value=0.0043  Score=33.37  Aligned_cols=72  Identities=17%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeeecCCC--eeEEEECCEEeccCCc---EEEEec-CC---eEEEEEecCCCCC-CEEEEEEEecCCceeE
Q psy12132          7 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR---IDMHVS-SE---KHSLLVRHIKDTD-FGNYMCQASNNLGSSQ   76 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~---~~~~~~-~~---~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~   76 (126)
                      .++.++|.|.+.+.-+.  .+.|.+++..+..+..   .....+ +.   .+.|.+...+-.+ ...|+|.+........
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~   96 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT   96 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence            35678999999875433  7899999987653311   111111 11   1234444332223 3479999887644444


Q ss_pred             EE
Q psy12132         77 QF   78 (126)
Q Consensus        77 ~~   78 (126)
                      ..
T Consensus        97 ~~   98 (115)
T cd05769          97 DK   98 (115)
T ss_pred             ee
Confidence            33

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.45  E-value=0.00081  Score=36.72  Aligned_cols=78  Identities=19%  Similarity=0.229  Sum_probs=43.6

Q ss_pred             ccCCccEEEEEEeeec-----CCCeeEEEECCEEecc---CCc-E--------EEE-ecCCeEEEEEecCCCCCCEEEEE
Q psy12132          5 TAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITL---GGR-I--------DMH-VSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~---~~~-~--------~~~-~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      ..-++++.++|.+...     +...+.|..++..+-.   ... .        .+. -..++++|.+...+.- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            3457889999998631     2336899988876421   111 1        110 0113556888775544 899999


Q ss_pred             EEecCCceeEEEEEEEe
Q psy12132         67 QASNNLGSSQQFIQLSG   83 (126)
Q Consensus        67 ~~~~~~~~~~~~~~l~~   83 (126)
                      .+.....+....+.|..
T Consensus       103 eVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  103 EVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEE
Confidence            99877666676666664

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.45  E-value=0.0021  Score=33.30  Aligned_cols=70  Identities=10%  Similarity=0.152  Sum_probs=38.5

Q ss_pred             ccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          9 MRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         9 ~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ..+.+.|.+. +.|.+.++|+++..... ........++.   .+.|.+.....+|-..|+|.+.+..-.....+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~   89 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL   89 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            3578899875 77888999998621110 00001111111   12455544444445589999998754444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=97.43  E-value=0.0011  Score=31.14  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             EEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132         50 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        50 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      .|.|.++...|+|.|.|...|..-.....+.+.+.
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            68899999999999999999876566666777664

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.41  E-value=0.0016  Score=31.37  Aligned_cols=49  Identities=20%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      .+.+.|.|..    ..++.|++ |..+....         ...+.+.....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            4468999965    35699999 43332111         12677778888889999998766

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.35  E-value=0.003  Score=32.74  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEE
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTA   33 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~   33 (126)
                      ++.+.|.|.+.+.-+  ..++|.++|..
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            557999999987543  37899999986

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.34  E-value=0.00056  Score=41.46  Aligned_cols=48  Identities=15%  Similarity=0.379  Sum_probs=38.8

Q ss_pred             cCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132         20 NPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus        20 ~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ...|.+.|.. ++..+....+..++..|   .|.+.+....++|.|+|....
T Consensus        10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence            3578899998 45566666677777666   799999999999999998764

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.26  E-value=0.007  Score=31.37  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             ccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          9 MRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         9 ~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      ....+.|.+ .|.|.+.|.|+++..... ........++.   .+.|.+.....++-..|+|.+.+..-
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            356778998 578899999998611100 00000111111   13455544444444579999988653

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA02982 hypothetical protein; Provisional

Probab=97.10  E-value=0.0038  Score=36.81  Aligned_cols=70  Identities=13%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             eeccCCccEEEEEEeee-cCCCeeEEEECC-EEec----------c--------CCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYA-NPPAKVEWFRDG-TAIT----------L--------GGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~-~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      +.+..++.+.|+|.... .-..++.|.++. ..+.          .        ...+..+..+..++|+|.+++....|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            45567899999998532 223367897643 2221          0        11233445566789999999999999


Q ss_pred             EEEEEEecCC
Q psy12132         63 NYMCQASNNL   72 (126)
Q Consensus        63 ~y~C~~~~~~   72 (126)
                      -|+|.+....
T Consensus       114 CYtc~~ks~~  123 (251)
T PHA02982        114 CFTCEAKDAE  123 (251)
T ss_pred             ceEEEEecCC
Confidence            9999998754

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.89  E-value=0.0077  Score=31.48  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             CCccEEEEEEeeecC---CCeeEEEECCEE
Q psy12132          7 PDMRAEIICNVYANP---PAKVEWFRDGTA   33 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p---~~~~~w~~~~~~   33 (126)
                      .+..+.|.|.+.+.-   ...+.|.+++..
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            466799999998754   237999998754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.89  E-value=0.017  Score=30.11  Aligned_cols=66  Identities=14%  Similarity=0.193  Sum_probs=38.4

Q ss_pred             eccCCccEEEEEEeeec-CC--CeeEEEECCEEeccCCcEEE-----EecCCeEEEEEecCCCCCCE-EEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYAN-PP--AKVEWFRDGTAITLGGRIDM-----HVSSEKHSLLVRHIKDTDFG-NYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~-p~--~~~~w~~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~   71 (126)
                      ...+|..+++.|.+.+. |.  ..+.|++....+.... +.-     ........+.+... +.|.| +|.|.+.-.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            34679999999999643 33  3688988665443221 110     00111124555443 66766 899987753

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03042 CD47-like protein; Provisional

Probab=96.83  E-value=0.026  Score=34.75  Aligned_cols=70  Identities=23%  Similarity=0.351  Sum_probs=42.4

Q ss_pred             cCCccEEEEEEeeec-----CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          6 APDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .-.+++.++|.+...     ...++.|..++..+-.....      ..++|.+...+ .-.|+|+|.+.+..-+..+...
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~Ie  101 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIE  101 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccEEEE
Confidence            346789999998632     24579999988765321111      11356654443 4489999998864433444444


Q ss_pred             EE
Q psy12132         81 LS   82 (126)
Q Consensus        81 l~   82 (126)
                      +.
T Consensus       102 Lk  103 (286)
T PHA03042        102 LQ  103 (286)
T ss_pred             EE
Confidence            44

>KOG4597|consensus

Probab=96.66  E-value=0.0042  Score=40.91  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=57.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEE---CCEEe--ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFR---DGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~---~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      .+-++++..+.|.+.|.+.+.|.|.+   ++..+  .....+.-..-.....|.|-+....|.|.|+|.+.+..|...+.
T Consensus       207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rd  286 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRD  286 (560)
T ss_pred             hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecc
Confidence            45567889999999999999999965   22221  11111110111124579999999999999999999999988888


Q ss_pred             EEEEec
Q psy12132         79 IQLSGI   84 (126)
Q Consensus        79 ~~l~~~   84 (126)
                      +.+.+.
T Consensus       287 v~c~s~  292 (560)
T KOG4597|consen  287 VPCSSV  292 (560)
T ss_pred             ceeeee
Confidence            877653

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.64  E-value=0.032  Score=29.06  Aligned_cols=69  Identities=12%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             eeccCCccEEE-EEEe-eecCCCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          3 SITAPDMRAEI-ICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         3 ~~~~~g~~~~l-~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.+.+|+.+.+ .|.+ .+.|.+.++|+.+..... ........++.   .+.+.+......|-..++|.+....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            34556777777 7876 577888999997532211 01111111121   1244444443344447999988753

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG1480|consensus

Probab=96.58  E-value=0.00047  Score=47.60  Aligned_cols=69  Identities=23%  Similarity=0.499  Sum_probs=50.7

Q ss_pred             eccCCccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          4 ITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         4 ~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      .+..+..+++.|.. .+.|...++|++++..+..........+   ..+.+..+...|.|+|+|.+.|..+..
T Consensus       140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             eecccccccccccCcccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhcccceeeeehhhccc
Confidence            34556677888875 5677778999999887776544433333   368888999999999999999865533

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.42  E-value=0.08  Score=35.43  Aligned_cols=77  Identities=13%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             eEEEEEecCCCCCCEEEEEEEec---CCceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         48 KHSLLVRHIKDTDFGNYMCQASN---NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        48 ~~~l~i~~~~~~d~g~y~C~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      ...|.|..+...+.|.|+-...+   .....+..+.+.....|.+.......+.|+.+.-+|....+.|.-+-.+.|.+.
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            35799999999999999977653   223344555555544444444445567888999999998886666666666654

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.42  E-value=0.054  Score=29.12  Aligned_cols=66  Identities=9%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             eeccCCccEEEEEEeeecCCC---eeEEEEC--CE-E-ec-----------cCCcEEEEe--cCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYANPPA---KVEWFRD--GT-A-IT-----------LGGRIDMHV--SSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~--~~-~-~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g   62 (126)
                      ..+.+|+.+.|.|.+.+....   .+.|+|.  +. + +.           ...++....  ....-.|.+.+++..|.+
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa   87 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD   87 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence            456788899999999654433   5778873  21 1 00           112332222  222357999999999999


Q ss_pred             EEEEEE
Q psy12132         63 NYMCQA   68 (126)
Q Consensus        63 ~y~C~~   68 (126)
                      .|.|..
T Consensus        88 ~Y~Ca~   93 (115)
T cd05721          88 IYFCKI   93 (115)
T ss_pred             EEEEEe
Confidence            999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.94  E-value=0.097  Score=27.67  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=26.3

Q ss_pred             eEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEEEe
Q psy12132         48 KHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLSG   83 (126)
Q Consensus        48 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~~   83 (126)
                      +.+|.|..++..|+|.|...+.+..|.. .+.+.+.+
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4589999999999999999999888766 33444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG3515|consensus

Probab=95.74  E-value=0.041  Score=38.73  Aligned_cols=93  Identities=13%  Similarity=0.032  Sum_probs=57.4

Q ss_pred             ecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEecCCCCeecc--Ccc
Q psy12132         19 ANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK--SSR   95 (126)
Q Consensus        19 ~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~   95 (126)
                      +.| .+++.|.+++..+.....-.+............++.+.|.|.|.|.+.+..|.....+.+.+...++....  +..
T Consensus       427 ~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~  506 (741)
T KOG3515|consen  427 GAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVE  506 (741)
T ss_pred             CCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccc
Confidence            444 45789988876665443322221111223446668899999999999999888888877665544444333  233


Q ss_pred             eeCCCeeEEEEEEccC
Q psy12132         96 RLGPDGYRLVWQVDTY  111 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~  111 (126)
                      ...++++...|.....
T Consensus       507 ~~~~ns~~~~~~q~~~  522 (741)
T KOG3515|consen  507 GATGNSVDGECMQDEQ  522 (741)
T ss_pred             cCCCCcccceeecccc
Confidence            3445566777766443

>PHA03270 envelope glycoprotein C; Provisional

Probab=95.25  E-value=0.52  Score=31.29  Aligned_cols=75  Identities=8%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             EEEEecCCCCCCEEEEEEEecCCc--eeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         50 SLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        50 ~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      .|.|..+.....|.|+-...+..+  .....+.+.....|.+.......+.++.+.-+|....+.|.-+-.+.|.+.
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            389999999999999998765433  334455555443444444444457788889999998776655555666543

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.13  E-value=0.2  Score=25.72  Aligned_cols=65  Identities=14%  Similarity=0.316  Sum_probs=39.4

Q ss_pred             eeccCCccEEEEEEeeec-----CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          3 SITAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ..+..|++++..|.....     ....+.|..++..+. .+++....++ .+..++.+.+....-.|.|...
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVINDT-VSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEESTT-EEEEEESS--SSEEEEEEEEEC
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcceeCCe-EEEEEEccCCCCCceEEEEEEc
Confidence            457789999999998522     345789988887554 3444444433 3567777776655556767643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.09  E-value=0.57  Score=30.88  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=27.9

Q ss_pred             EEEEEecCCCCCCEEEEEEEec-CCceeEEEEEEEecC
Q psy12132         49 HSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLSGIP   85 (126)
Q Consensus        49 ~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~~~~   85 (126)
                      ..+.+.++...|.|.|+|.... ..-..++.+.+.+.|
T Consensus        81 Ysf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmP  118 (500)
T PHA02914         81 YSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAP  118 (500)
T ss_pred             eEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEcc
Confidence            4677888999999999998774 444557777777653

>PHA03273 envelope glycoprotein C; Provisional

Probab=94.99  E-value=0.5  Score=31.63  Aligned_cols=76  Identities=17%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             EEEEEecCCCCCCEEEEEEEecCCc--eeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         49 HSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        49 ~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      ..|.|..+.....|.|+-...+..+  .....+.+.....|.+.......+.++.+..+|....+.|.-.-.+.|.+.
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4599999999999999977654333  334444444333444444444457888899999998876666666666553

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.16  E-value=0.38  Score=30.98  Aligned_cols=21  Identities=14%  Similarity=0.680  Sum_probs=16.9

Q ss_pred             cEEEEEEeeecCCC--eeEEEEC
Q psy12132         10 RAEIICNVYANPPA--KVEWFRD   30 (126)
Q Consensus        10 ~~~l~C~~~~~p~~--~~~w~~~   30 (126)
                      .++|.|.+.|.-+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999876544  6789998

>PHA03271 envelope glycoprotein C; Provisional

Probab=93.95  E-value=1.2  Score=29.65  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=47.5

Q ss_pred             eEEEEEecCCCCCCEEEEEEEecC--CceeEEEEEEEecCCCC-eeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         48 KHSLLVRHIKDTDFGNYMCQASNN--LGSSQQFIQLSGIPNIP-VFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        48 ~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      +..+.|.++...++|.|.-...+.  .....+.+.+.+...+| +.......+.++.+..+|....+.|.-+-++.|.+.
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            467999999999999553333321  12223344444444444 444444456788889999998876666566666653

>PHA03052 Hypothetical protein; Provisional

Probab=93.22  E-value=0.41  Score=23.09  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=24.4

Q ss_pred             ceeccCCccEEEEEEeeecC---CCeeEEEECCEEe
Q psy12132          2 HSITAPDMRAEIICNVYANP---PAKVEWFRDGTAI   34 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~   34 (126)
                      .+.+..|.++++.|.+.-.+   .+.+.|..|+..+
T Consensus         6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            35678899999999986333   3357888888766

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=91.86  E-value=0.65  Score=24.26  Aligned_cols=30  Identities=3%  Similarity=-0.004  Sum_probs=20.9

Q ss_pred             cceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         94 SRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .....++.+.|.|...+.++.....+.|++
T Consensus        11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~   40 (98)
T cd05898          11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKE   40 (98)
T ss_pred             EEEeCCCcEEEEEEEccCCCCcEEEEEEcc
Confidence            334578889999999877776655555553

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=91.79  E-value=0.85  Score=22.31  Aligned_cols=29  Identities=17%  Similarity=0.484  Sum_probs=23.2

Q ss_pred             eCCCeeEEEEEEc--cCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVD--TYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~--~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|...  ....+..|.+.|+...
T Consensus        11 ~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~   41 (85)
T PF00041_consen   11 ISPTSVTVSWKPPSSGNGPITGYRVEYRSVN   41 (85)
T ss_dssp             ECSSEEEEEEEESSSTSSSESEEEEEEEETT
T ss_pred             CCCCEEEEEEECCCCCCCCeeEEEEEEEecc
Confidence            3677899999996  3678889999998754

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.29  E-value=1.7  Score=21.78  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=16.8

Q ss_pred             EEEEecCCCCCCEEEEEEE-ecCC
Q psy12132         50 SLLVRHIKDTDFGNYMCQA-SNNL   72 (126)
Q Consensus        50 ~l~i~~~~~~d~g~y~C~~-~~~~   72 (126)
                      ..........|.|.+.|.+ .+..
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~   67 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEP   67 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTT
T ss_pred             EEEEecCCCCCCEEEEEEEcCCce
Confidence            3455566779999999999 4443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=86.80  E-value=2.4  Score=28.19  Aligned_cols=69  Identities=17%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             eeccCCccEEEEEEeee--cC-CCeeEEEECCEEec-----------------cCCcEEEE------ecCCeEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYA--NP-PAKVEWFRDGTAIT-----------------LGGRIDMH------VSSEKHSLLVRHI   56 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~--~p-~~~~~w~~~~~~~~-----------------~~~~~~~~------~~~~~~~l~i~~~   56 (126)
                      +.+..|.++.+.|...-  +- ...+.|+.-+-++.                 ....+.+.      .+-..++|+|..+
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            34556999999998853  22 23578975432221                 11222222      1223568999999


Q ss_pred             CCCCCEEEEEEEecC
Q psy12132         57 KDTDFGNYMCQASNN   71 (126)
Q Consensus        57 ~~~d~g~y~C~~~~~   71 (126)
                      +....|-|+|.+...
T Consensus       354 ~I~N~GCY~~~a~~g  368 (500)
T PHA02914        354 HINNAGCYEAQAFMG  368 (500)
T ss_pred             EEEcCCceEEEEecC
Confidence            999999999998864

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=85.14  E-value=3.6  Score=21.65  Aligned_cols=34  Identities=9%  Similarity=-0.021  Sum_probs=20.3

Q ss_pred             CeeccCcceeCCCeeEEEEEEccCCcceeEEEEE
Q psy12132         88 PVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKF  121 (126)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  121 (126)
                      |.+..+.....+..++|+|.+.+..|.....+.|
T Consensus         4 p~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~v~L   37 (99)
T cd07689           4 PEILLSGPLEEGKPVTVKCEVPDVYPFDRLEIEL   37 (99)
T ss_pred             ccCcccCcccCCceEEEEEEecCcccCCceEEEE
Confidence            3333333345778889999887766654444443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03112 IL-18 binding protein; Provisional

Probab=80.69  E-value=8.1  Score=21.80  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             eccCCccEEEEEEeeec-CC-CeeEEEECC
Q psy12132          4 ITAPDMRAEIICNVYAN-PP-AKVEWFRDG   31 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~-p~-~~~~w~~~~   31 (126)
                      ....++++.|.|...+. |. ..+.|..++
T Consensus        34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn   63 (141)
T PHA03112         34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN   63 (141)
T ss_pred             ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence            44568899999998754 43 467898654

>PHA03269 envelope glycoprotein C; Provisional

Probab=80.52  E-value=16  Score=25.24  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=24.8

Q ss_pred             eccCCccEEEEEEeeecCCC---eeEEEECCEEec
Q psy12132          4 ITAPDMRAEIICNVYANPPA---KVEWFRDGTAIT   35 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~~   35 (126)
                      .++.|++..-.|.+..+-++   .+.|+.++..+.
T Consensus       338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~  372 (566)
T PHA03269        338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG  372 (566)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence            46779999999999755444   689999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		5e-07
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		6e-07
3mtr_A	215	Crystal Structure Of The Ig5-Fn1 Tandem Of Human Nc		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-05
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-05
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-05
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		3e-05
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		3e-05
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		3e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		6e-05
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		8e-05
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-04
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-04
2lu7_A	84	Solution Nmr Structure Of Ig Like Domain (1277-1357		5e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-04
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		7e-04
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		7e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-04

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 13  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN 70
           I C+V +NPPA + W RD   +      ++   S   K  L +    D DFG Y C A+N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 71  NLGSS-QQFI-QLSGIPNIP 88
           ++G+  Q++I  L+ +P+ P
Sbjct: 180 HIGTRFQEYILALADVPSSP 199

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 13  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN 70
           I C+V +NPPA + W RD   +      ++   S   K  L +    D DFG Y C A+N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 71  NLGSS-QQFI-QLSGIPNIP 88
           ++G+  Q++I  L+ +P+ P
Sbjct: 180 HIGTRFQEYILALADVPSSP 199

>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam Length = 215

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 13  IICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           I C V+A P A + WFRDG  +       I ++ +     L V    + DFGNY C A N
Sbjct: 38  ITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
Query: 71  NLG-SSQQFIQLSG-IPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFREREG 126
            +G  S +FI +    P+ P                  QV+ YS+  Q  ++F E E 
Sbjct: 98  RIGQESLEFILVQADTPSSPSID---------------QVEPYSSTAQ--VQFDEPEA 138

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
           C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C ASN  G 
Sbjct: 27  CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 75  SQQFIQLSGIPNIPVFQK 92
                QL G+   P F K
Sbjct: 87  DSCSAQL-GVQEPPRFIK 103

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
           C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C ASN  G 
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 75  SQQFIQLSGIPNIPVFQK 92
                QL G+   P F K
Sbjct: 279 DSCSAQL-GVQEPPRFIK 295

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
           C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C ASN  G 
Sbjct: 27  CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 75  SQQFIQLSGIPNIPVFQK 92
                QL G+   P F K
Sbjct: 87  DSCSAQL-GVQAPPRFIK 103

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
          AE+ C V   PP  V W + G  +    R+       +H LL+     TD G Y+C+A N
Sbjct: 31 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
          AE+ C V   PP  V W + G  +    R+       +H LL+     TD G Y+C+A N
Sbjct: 32 AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           AE+ C V   PP  V W + G  +    R+       +H LL+     TD G Y+C+A 
Sbjct: 31 EAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 90
Query: 70 N 70
          N
Sbjct: 91 N 91

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 12 EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
          E+ C    NPP ++ WF+D   +     I +   +   +L +R ++  D G Y CQA + 
Sbjct: 29 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSV 86
Query: 72 LGSSQ 76
          LG ++
Sbjct: 87 LGCAK 91

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 12  EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
           E+ C    NPP ++ WF+D   +     I +       +L +R ++  D G Y CQA + 
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 72  LGSSQ 76
           LG ++
Sbjct: 743 LGCAK 747

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
          C    +P   + WFR+G  I    +  +  S+ +  L VR+I ++D G Y+C+A+N  G 
Sbjct: 26 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 83
Query: 74 -SSQQFIQLSGIPNI 87
             Q F+Q+   P+I
Sbjct: 84 DEKQAFLQVFVQPHI 98

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           ++A + C    NP   V W +  +A+    RI +    E  SL + +++  D G Y C A
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVA 172
Query: 69  SNNLGSS 75
            N+LG++
Sbjct: 173 KNSLGTA 179

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1   MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT- 59
           M  + + + + ++ C V  NP   + W  +GT + +G  +D   S    SLL+ +   T 
Sbjct: 16  MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQ 73
Query: 60  DFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSAI 114
           D G Y C A+N+ G   S +  +Q + + N     +S  S R G  G  L+     +S  
Sbjct: 74  DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGE 132
Query: 115 IQYLLKFRE 123
           + Y   F E
Sbjct: 133 LSYAWIFNE 141

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 1   MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT- 59
           M  + + + + ++ C V  NP   + W  +GT + +G  +D   S    SLL+ +   T 
Sbjct: 15  MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQ 72
Query: 60  DFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSAI 114
           D G Y C A+N+ G   S +  +Q + + N     +S  S R G  G  L+     +S  
Sbjct: 73  DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGE 131
Query: 115 IQYLLKFRE 123
           + Y   F E
Sbjct: 132 LSYAWIFNE 140

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
           C    +P   + WFR+G  I    +  +  S+ +  L VR+I ++D G Y+C+A+N  G 
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 177
Query: 74  -SSQQFIQL 81
              Q F+Q+
Sbjct: 178 DEKQAFLQV 186

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
           C    +P   + WFR+G  I    +  +  S+ +  L VR+I ++D G Y+C+A+N  G 
Sbjct: 216 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 273
Query: 74  -SSQQFIQL 81
              Q F+Q+
Sbjct: 274 DEKQAFLQV 282

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 11  AEIICNVYANPPAKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
           A ++C    NP  ++ WF+D   +      GRI    S    +L +   +++D G Y C 
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 68  ASNNLGS 74
           A+N+ G+
Sbjct: 186 ATNSAGT 192

>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of Obscurin-Like Protein 1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr8578d Length = 84

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 5  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
          + P    E++ ++ + P   V W++DG  +   GR+ +  +  +  L V+  +  D G Y
Sbjct: 8  STPGGDLELVVHL-SGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEY 66
Query: 65 MCQASNN 71
          +C A  +
Sbjct: 67 LCDAPQD 73

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A++ C +   P   ++W+R G  +    +  M      H+L V   +  D G Y C A+N
Sbjct: 25  AQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84
Query: 71  NLG----SSQQFIQLSGI--PNIPVFQK 92
            +G    SS+  +Q +    P  P+ +K
Sbjct: 85  EVGEVETSSKLLLQATPQFHPGYPLKEK 112

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL----VRHIKDTDFGNYMC 66
          A + C V   P   +EWF+DG  ++   +    V  +  +L     ++  K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 QASNNLGSS 75
           A N +G +
Sbjct: 87 VAKNRVGQA 95

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL----VRHIKDTDFGNYMC 66
          A + C V   P   +EWF+DG  ++   +    V  +  +L     ++  K+ D G Y C
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 67 QASNNLGSS 75
           A N +G +
Sbjct: 87 VAKNRVGQA 95

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 11  AEIICNVYANPPAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
           A ++C    NP  ++ WF+D   +   T  GRI    S     L +   ++TD G Y C 
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSG---GLQIESSEETDQGKYECV 182
Query: 68  ASNNLG 73
           ASN+ G
Sbjct: 183 ASNSAG 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-20
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-13
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-17
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-15
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-17
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-17
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-14
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-10
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-12
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-16
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-16
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	5e-16
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	8e-16
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	8e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-15
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-12
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-15
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-15
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	9e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-14
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-14
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-14
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-13
2ens_A	96	Advanced glycosylation END product-specific recept	1e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-10
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-13
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-12
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-13
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-13
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	9e-13
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-13
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-12
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-12
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-10
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-10
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-11
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-11
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-09
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-11
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-10
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-07
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	8e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	2e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	3e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	5e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	9e-04

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 81.4 bits (201), Expect = 2e-20
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDF 61
            T    +  I C V+A P A + WFRDG  +       I ++ +     L V    + DF
Sbjct: 29  YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88

Query: 62  GNYMCQASNNLGSSQQFIQLS-----GIPNIPVFQKSSRRLGPDGYRLVW---QVDTYSA 113
           GNY C A N +G       L        P+I   +  S        ++ +   +      
Sbjct: 89  GNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVP 143

Query: 114 IIQYLLKFRE 123
           I++Y  ++R 
Sbjct: 144 ILKYKAEWRA 153

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 77.2 bits (190), Expect = 7e-18
 Identities = 18/78 (23%), Positives = 35/78 (44%)

Query: 5   TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
           T       + C +   PP +V W +D   +  G +  +   +   S+ + ++   D G Y
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455

Query: 65  MCQASNNLGSSQQFIQLS 82
            C+ASN++GS      ++
Sbjct: 456 QCKASNDVGSDTCVGSIT 473

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.4 bits (175), Expect = 8e-16
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
             A      + C V   P  ++ W+++ T +       M   +   SL++  +  +D G 
Sbjct: 16  EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGE 75

Query: 64  YMCQASNNLG--SSQQFIQLSGIPNIPVFQKS 93
           Y C+A N++G  +S   + +      P F + 
Sbjct: 76  YTCKAENSVGAVASSAVLVIKERKLPPSFARK 107

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
               C +  + P +V W++DG  +     +         +L +     +  G Y C ASN
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178

Query: 71  NLGSSQQFIQLS--GIPNIPVFQKSSR 95
            LG++    +L+       P F     
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPV 205

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 68.7 bits (168), Expect = 7e-15
 Identities = 22/72 (30%), Positives = 28/72 (38%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
               C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C ASN
Sbjct: 215 GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274

Query: 71  NLGSSQQFIQLS 82
             G      QL 
Sbjct: 275 VAGKDSCSAQLG 286

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
           I   D      C +  +P  KV W++D T I    +  M        L + ++   D G+
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361

Query: 64  YMCQASNNLGSSQQFIQLSGIPNIPVFQK 92
           Y C+A N  GS+     L  +   PVF+K
Sbjct: 362 YTCEAHNAAGSASSSTSLK-VKEPPVFRK 389

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 64.1 bits (156), Expect = 3e-13
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
              ++   +    P  V WF+D   I      I +  S    +L     +  + G Y CQ
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552

Query: 68  ASNNLGSSQQFIQLS 82
             N  G+ + F  LS
Sbjct: 553 IKNEAGTQECFATLS 567

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 1   MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
            H +         + C +   PP +V W +D   +  G +  +   +   S+ + ++   
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258

Query: 60  DFGNYMCQASNNLGSSQQFIQLS 82
           D G Y C+ASN++GS      ++
Sbjct: 259 DIGEYQCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
                C +  +P  KV W++D T I    +  M        L + ++   D G+Y C+A 
Sbjct: 116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175

Query: 70  NNLGSSQQFIQLS 82
           N  GS+     L 
Sbjct: 176 NAAGSASSSTSLK 188

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 23/77 (29%), Positives = 29/77 (37%)

Query: 6  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
          A        C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y 
Sbjct: 18 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77

Query: 66 CQASNNLGSSQQFIQLS 82
          C ASN  G      QL 
Sbjct: 78 CYASNVAGKDSCSAQLG 94

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 73.3 bits (180), Expect = 2e-17
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3   SITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
           + TA         C    +P   + WFR+G  I    +    +      L VR+I ++D 
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDG 164

Query: 62  GNYMCQASNNLGSSQQFIQLS 82
           G Y+C+A+N  G  ++   L 
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
          AE++C V ++P   V W      +T        + +  ++L + +I  +D G Y C+   
Sbjct: 20 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 78

Query: 71 NLGSSQQF 78
                 F
Sbjct: 79 EARGEIDF 86

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
              E+ C    NPP ++ WF+D   +     I   +     +L +R ++  D G Y CQA
Sbjct: 682 ESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQA 739

Query: 69  SNNLGSSQQFIQLS--GIPNIPVFQK 92
            + LG ++        G       ++
Sbjct: 740 CSVLGCAKVEAFFIIEGAQEKTNLER 765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           R  I       PP +++W+++G  +     I        H L +  + + D GNY    +
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-----KAGHVLTIMEVSERDTGNYTVILT 401

Query: 70  NNLGSSQQFIQLS 82
           N +   +Q   +S
Sbjct: 402 NPISKEKQSHVVS 414

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 20/92 (21%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAI--------------------TLGGRIDMHVSSEKHS 50
             + C    +    + W++ G                        L   +  + +++   
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626

Query: 51  LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
           + +++    D G+Y+C A +     +  +   
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 12/97 (12%)

Query: 11  AEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHS--------LLVRHIKDTD 60
             + C         ++  W    +       ++  + ++  S        L +  +  +D
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSD 301

Query: 61  FGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSR 95
            G Y C AS+ L + +    +     P +        
Sbjct: 302 QGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 1/84 (1%)

Query: 13  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNN 71
           +             W  + +       +           L +  +   D G Y C     
Sbjct: 49  LQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRET 108

Query: 72  LGSSQQFIQLSGIPNIPVFQKSSR 95
             +S  ++ +    +  +   S +
Sbjct: 109 DLASVIYVYVQDYRSPFIASVSDQ 132

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 7/91 (7%)

Query: 10  RAEIICNVYANPPAKV--EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
              I C    +         + +   +  G RI       K    +     +  G   C+
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRI---SWDSKKGFTIPSYMISYAGMVFCE 201

Query: 68  ASNNLGS--SQQFIQLSGIPNIPVFQKSSRR 96
           A  N  S  S  +I +     I     S   
Sbjct: 202 AKINDESYQSIMYIVVVVGYRIYDVVLSPSH 232

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 14/107 (13%), Positives = 24/107 (22%), Gaps = 34/107 (31%)

Query: 10  RAEIICNVYANP-PAKVEWFRDGTAITL-------------------------------- 36
              + C VYA P P  + W+                                        
Sbjct: 440 TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEV 499

Query: 37  -GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
              +  +     K    +          Y C+A N +G  ++ I   
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 70.1 bits (172), Expect = 4e-17
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 1   MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
             S+T  +   A   C+    P   V W R G  ++   R  +  +  K +  +  ++ +
Sbjct: 21  PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 80

Query: 60  DFGNYMCQASNNLGSSQQFIQL 81
           D GNY     N+ G  +    L
Sbjct: 81  DEGNYSVVVENSEGKQEAEFTL 102

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 15/123 (12%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQAS 69
             I       P   + W +    I   G   + V+    SL+    ++  D G Y+  A 
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 70  NNLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVWQ---VDTYSAIIQYLLK 120
           N  G  Q+ ++L    +P+ P    V   S   +      L W     D  S I  Y+++
Sbjct: 182 NRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSV-----NLTWTEPASDGGSKITNYIVE 236

Query: 121 FRE 123
              
Sbjct: 237 KCA 239

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 4  ITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDF 61
                 A ++C V  +P   V+W+R G  I   G +  +       H L++  + D D 
Sbjct: 15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74

Query: 62 GNYMCQASNNLGSSQQFIQLS 82
            Y  +A+N  GS      L 
Sbjct: 75 TVYQVRATNQGGSVSGTASLE 95

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 72.4 bits (178), Expect = 4e-17
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 1   MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
           + S+T     +  +   V   P   V+++RDG  I       +    + +SLL+      
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE 169

Query: 60  DFGNYMCQASNNLGSSQQFIQLS 82
           D G Y   A+N++G +    +L 
Sbjct: 170 DSGTYSVNATNSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 65.9 bits (161), Expect = 1e-14
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 67
            A    ++   P  +V WFRDG  I+      + +S    +  L +  +   + G Y  +
Sbjct: 22  TATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK 81

Query: 68  ASNNLGSSQQFIQLS--GIPNIPVFQK 92
           A+N  G +    +L        P F +
Sbjct: 82  ATNGSGQATSTAELLVKAETAPPNFVQ 108

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 71.8 bits (176), Expect = 8e-17
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 11  AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
            ++   V Y     KV W  +G+AI    R+   V+ E+  L +      D G Y+ +  
Sbjct: 20  IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79

Query: 70  NNLGSSQQFIQLSGIPNIPVFQKSSRR 96
           +     Q+ + LSG      + +  R 
Sbjct: 80  DGKTGHQKTVDLSGQAYDEAYAEFQRL 106

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYMCQAS 69
             + CNV+ +PP +V W ++  A+      ++   + +     +  +   D G Y     
Sbjct: 135 LNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194

Query: 70  NNLGSSQQFIQLS 82
           N  GS      +S
Sbjct: 195 NKYGSETSDFTVS 207

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 2   HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
            + TA         C    +P   + WFR+G  I    +    +      L VR+I ++D
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSD 259

Query: 61  FGNYMCQASNNLGSSQQFIQLS 82
            G Y+C+A+N  G  ++   L 
Sbjct: 260 GGPYVCRATNKAGEDEKQAFLQ 281

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
              C     P +   +   G  I    R+ +     +  L + +    D G Y CQA++
Sbjct: 22 KFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81

Query: 71 NLGSSQ 76
            G +Q
Sbjct: 82 AKGQTQ 87

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           AE++C V ++P   V W      +T        + +  ++L + +I  +D G Y C+   
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 174

Query: 71  NLGSSQQF 78
                  F
Sbjct: 175 EARGEIDF 182

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 19/85 (22%), Positives = 32/85 (37%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
              Y     KV W  +G+AI    R+   V+ E+  L +      D G Y+ +  +    
Sbjct: 130 FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 189

Query: 75  SQQFIQLSGIPNIPVFQKSSRRLGP 99
            Q+ + LSG      + +  R    
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQA 214

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 72.3 bits (177), Expect = 2e-16
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYMCQAS 69
             + CNV+ +PP +V W ++  A+      ++   + +     +  +   D G Y     
Sbjct: 240 LNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299

Query: 70  NNLGSSQQFIQLS 82
           N  GS      +S
Sbjct: 300 NKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 8   DMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
           +    + C V        + W++D   I++  + D        +LL+      D G Y  
Sbjct: 21  ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEV 78

Query: 67  QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV 108
              ++ G  +  ++L       +  +  +++      L  Q 
Sbjct: 79  ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 68.9 bits (169), Expect = 2e-16
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            E+   V    P    W +    I     + +  S     L +   +    G Y     N
Sbjct: 25  VELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84

Query: 71  NLGSSQQFIQLS--GIPNIPVF 90
            LGS Q  + L+    P+ P  
Sbjct: 85  KLGSRQAQVNLTVVDKPDPPAG 106

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             I C+V +NPPA + W RD   +       +  + +  K  L +    D DFG Y C A
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 69  SNNLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVW---QVDTYSAIIQYLL 119
           +N++G+  Q   L+   +P+ P    + + S         ++ +          I  Y +
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTA-----KVSFNKPDSHGGVPIHHYQV 232

Query: 120 KFRE 123
             +E
Sbjct: 233 DVKE 236

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 4  ITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHI 56
           T  + +  ++C+    P  ++ W R     T         GRI++       SL ++ +
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70

Query: 57 KDTDFGNYMCQASNNLGSSQQFIQLS 82
          K +D G Y C+A++ +G  Q+ + L 
Sbjct: 71 KLSDSGRYDCEAASRIGGHQKSMYLD 96

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQAS 69
             I       P   + W +    I   G   + V+    SL+    ++  D G Y+  A 
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 70  NNLGSSQQFIQLS 82
           N  G  Q+ ++L 
Sbjct: 182 NRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 55.9 bits (135), Expect = 7e-11
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQA 68
          A ++C V  +P   V+W+R G  I   G        +   H L++  + D D   Y  +A
Sbjct: 22 ATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81

Query: 69 SNNLGSSQQFIQLS 82
          +N  GS      L 
Sbjct: 82 TNQGGSVSGTASLE 95

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 69.7 bits (171), Expect = 4e-16
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQAS 69
             +       P   + WF     +     I +  +     L+++++ + T  G Y  Q S
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180

Query: 70  NNLGSSQQFIQLS 82
           N  G+    + + 
Sbjct: 181 NVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
          A++ C +   P   ++W+R G  +    +  M      H+L V   +  D G Y C A+N
Sbjct: 25 AQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84

Query: 71 NLGSSQ 76
           +G  +
Sbjct: 85 EVGEVE 90

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 67.0 bits (164), Expect = 4e-16
 Identities = 13/71 (18%), Positives = 23/71 (32%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            +  +    P     W    +   L   + +   S   S+     K  D GNY  +  N
Sbjct: 20 HNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79

Query: 71 NLGSSQQFIQL 81
           LG  +   ++
Sbjct: 80 ELGEDEAIFEV 90

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 67.5 bits (165), Expect = 5e-16
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDF 61
            D    I   V  NP   ++WF +G  +     I   +    H      L + +    + 
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 62  GNYMCQASNNLGSSQQFIQLS--GIPNI 87
           G+Y   A N  G  ++ I     G P I
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 69.0 bits (169), Expect = 8e-16
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           ++A + C    NP   V W +  +A+    RI +    E  SL + +++  D G Y C A
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVA 172

Query: 69  SNNLGSSQ-QFIQLSGIPNIPVF 90
            N+LG++  + ++L     + VF
Sbjct: 173 KNSLGTAYSKLVKL----EVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
          A  +C V + P  ++ W R+   I L       +      L +  ++D+D G Y C A+N
Sbjct: 25 ATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANN 83

Query: 71 NLGSSQQ 77
           +G + +
Sbjct: 84 GVGGAVE 90

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 66.2 bits (162), Expect = 1e-15
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
          M S   P       I NV + P A+V+W+ +G  +    +I    +S   +L +      
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74

Query: 60 DFGNYMCQASNNLGSSQ 76
          D G Y    +N  G + 
Sbjct: 75 DSGTYRAVCTNYKGEAS 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 65.8 bits (161), Expect = 1e-15
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 3  SITAPD-MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
               +    + +C +       +V W+     +    + ++        L V+ I   D
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLD 69

Query: 61 FGNYMCQASNNLGSSQQFIQLS 82
           G Y C+  N+ G    + +L 
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELF 91

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.9 bits (161), Expect = 2e-15
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
          +  +T     +A   C V ++     +W+++G  +    RI +      H L++  ++  
Sbjct: 15 IADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPE 73

Query: 60 DFGNYMCQASNNLGSSQ 76
          D G+Y         S  
Sbjct: 74 DEGDYTFVPDGYALSLS 90

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           M  E  C V   P   V W ++G  +       +       +L +  +  +D G Y C A
Sbjct: 328 MDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI---VGGSNLRILGVVKSDEGFYQCVA 384

Query: 69  SNNLGSSQQFIQLS 82
            N  G++Q   QL 
Sbjct: 385 ENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 8   DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
              A + C V   PP    W R    I L  +   +      +LL+ ++ D D G Y C 
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK--YSLLGGSNLLISNVTDDDSGTYTCV 293

Query: 68  ASNNLGSSQQFIQLS 82
            +    +     +L+
Sbjct: 294 VTYKNENISASAELT 308

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 1   MHSITA-PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
             SITA       + C V  +P   + W ++   +         V     +L +  ++  
Sbjct: 128 TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPG 187

Query: 60  DFGNYMCQASNNLGSSQ 76
           D G Y C A N   +  
Sbjct: 188 DSGVYRCSARNPASTRT 204

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 15  CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-----KDTDFGNYMCQA 68
           C+  ++     ++W +DG  + LG            SLL+++I        D G Y C+A
Sbjct: 43  CSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEA 101

Query: 69  SNNLGSSQQ----FIQLSGIPNIPVFQKS 93
           S     S       + ++G        +S
Sbjct: 102 SLGDSGSIISRTAKVMVAGPLRFLSQTES 130

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 65.0 bits (159), Expect = 4e-15
 Identities = 18/67 (26%), Positives = 25/67 (37%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A+        P     W +DG AIT GG+  +        L +     +D G Y C   
Sbjct: 23 VAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82

Query: 70 NNLGSSQ 76
          N+ GS  
Sbjct: 83 NSAGSVS 89

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 65.0 bits (159), Expect = 4e-15
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
            E+ C + +     V W +D  AI    + D+        L++R     D G Y C+  
Sbjct: 25 DVELRCEL-SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE 83

Query: 70 NNLGSSQQFIQ 80
           +  ++   ++
Sbjct: 84 ASKSTASLHVE 94

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 64.8 bits (158), Expect = 6e-15
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH----SLLVRHIKDTDFGNYMCQA 68
          I   V  NPP  + W  +G  +     I +    E       LL       + GNY   A
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84

Query: 69 SNNLGSSQQFIQLS 82
           N LG++ Q I   
Sbjct: 85 KNPLGTANQTINGH 98

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 68.0 bits (166), Expect = 6e-15
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMC 66
               ++C+    P   + W +DG  I      D     S +   L +R++   D   Y+C
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271

Query: 67  QASNNLGSSQQFIQLS 82
            A N  G     I L 
Sbjct: 272 IAENKAGEQDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A I+C+V ++ P  + W   G  + L   +   V S  + L +R IK TD G Y C+   
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRI 176

Query: 71  NLGSSQQFIQLS 82
                  F  + 
Sbjct: 177 LARGEINFKDIQ 188

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 53.7 bits (129), Expect = 9e-10
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 11  AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKH---SLLVRHIKDTDFGNYMC 66
              +C V  +     + WF          +  + V        +L + +    D G Y C
Sbjct: 20  KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79

Query: 67  QASNNLGSSQ-QFIQLSGIPNIPVFQKSSR 95
             +   G+     + +  I    +F+ +  
Sbjct: 80  VVTAEDGTQSEATVNVK-IFQKLMFKNAPT 108

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 64.3 bits (157), Expect = 7e-15
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
          R   +  + A+P  +V+W+++G  I    +        +  L + + + TD   Y   A 
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAG 83

Query: 70 NNLGSSQQFIQ 80
          +   S++ F++
Sbjct: 84 DEKCSTELFVR 94

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 64.0 bits (156), Expect = 9e-15
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A + C V A    +V W++DG  ++   ++ +        L+V+     + G Y C+A 
Sbjct: 28 SATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG 86

Query: 70 NNLGS 74
              S
Sbjct: 87 GQQLS 91

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 63.9 bits (156), Expect = 9e-15
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
            S+       A            KV W R G+ I+   +  +     +H+L VR +   
Sbjct: 15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPA 73

Query: 60 DFGNYMCQASNNLGS 74
          D G+Y   A ++   
Sbjct: 74 DQGSYAVIAGSSKVK 88

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.9 bits (156), Expect = 1e-14
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 2  HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDT 59
           +++  +     +   V   P   V W+ +G  +       M VS +  HSL+   ++ +
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRAS 72

Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
          D G Y C A N  G +   +QL 
Sbjct: 73 DAGAYACVAKNRAGEATFTVQLD 95

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 63.9 bits (156), Expect = 1e-14
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
            E+ C    NPP ++ WF+D   +     I   +     +L +R ++  D G Y CQA 
Sbjct: 27 SIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQAC 84

Query: 70 NNLGSSQ 76
          + LG ++
Sbjct: 85 SVLGCAK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 63.1 bits (154), Expect = 2e-14
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A     + + P    +W   G  +      ++    +KH L++ + +    G    QA+
Sbjct: 22 TAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80

Query: 70 NNLGSSQ 76
          N   ++ 
Sbjct: 81 NTKSAAN 87

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 62.7 bits (153), Expect = 3e-14
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKD 58
          + S T      A     V   P  + EW+++G  I    RI  +   +    L++R +  
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71

Query: 59 TDFGNYMCQASNNLGS 74
           D  + M +A N  G 
Sbjct: 72 EDSASIMVKAINIAGE 87

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 63.2 bits (154), Expect = 3e-14
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
          R  + C +   P A+V W +DG  +     + +        L++  ++  D G Y+C+  
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID 88

Query: 70 NNLGSSQQFIQ 80
          +   S    + 
Sbjct: 89 DESASFTVTVT 99

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 63.7 bits (155), Expect = 3e-14
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 1   MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKD 58
           +  +   +   A   C V   P  +V WF+D   +       +    E   SL +  +  
Sbjct: 48  ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107

Query: 59  TDFGNYMCQASNNLGSSQ 76
            D   Y C+A N+LG + 
Sbjct: 108 DDDAKYTCKAVNSLGEAT 125

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 65.8 bits (160), Expect = 4e-14
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNL 72
                +  AKV +  +   I  G +  MH+        + +  ++D D G Y  Q  +  
Sbjct: 130 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 189

Query: 73  GSSQQFIQLSGIPNIPVFQKSS 94
            ++   + L G     + +++ 
Sbjct: 190 ATNHSTVVLVGDVFKKLQKEAE 211

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
               C+    P ++  W +D  +     R+++     K  +  + +   D G Y C  +
Sbjct: 20 SLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78

Query: 70 NNLGSSQQFIQLSGIPNIPV 89
          +  G +  ++         +
Sbjct: 79 DTDGIASSYLIDEEELKRLL 98

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 5   TAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
              +    + C V        + W++D   I++  + D        +LL+      D G 
Sbjct: 233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGI 290

Query: 64  YMCQASNNLGSSQQFIQLS 82
           Y     ++ G  +  ++L 
Sbjct: 291 YEVILKDDRGKDKSRLKLV 309

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.1 bits (161), Expect = 5e-14
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKD 58
              P     + C    NP  ++ W  DG  I    R  +      +      L +  +  
Sbjct: 440 TMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499

Query: 59  TDFGNYMCQASNNLGSSQQFIQLS 82
            D G Y C A + +G ++   +L+
Sbjct: 500 NDGGLYKCIAKSKVGVAEHSAKLN 523

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.0 bits (153), Expect = 6e-13
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 2   HSITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDT 59
                      + C+V     P  ++W  DG AI+    I    V      L +  ++ +
Sbjct: 628 EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS 687

Query: 60  DFGNYMCQASNNLGSSQQFIQL 81
             GN+ C A N  G  Q    L
Sbjct: 688 HAGNFTCHARNLAGHQQFTTPL 709

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 59.6 bits (144), Expect = 9e-12
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQ 67
              ++C     P     W++     T    + +   V     +L+++     D G Y+C 
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324

Query: 68  ASNNLGSSQQFIQLS 82
            +N++G       L+
Sbjct: 325 VNNSVGGESVETVLT 339

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRI---DMHVSSEKHSLLVRHIKDTDFGNYM 65
             A++ C     P  +V W +         +      ++  E+ +L V +I+ T+ G Y+
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789

Query: 66  CQASNNLGSS 75
           C+A N +GS 
Sbjct: 790 CEAINGIGSG 799

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A   C    NP   V W +DG AI             +  L +  +K  D G Y C   N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRN 410

Query: 71  NLGSSQQFIQL--SGIPNIPVFQKS 93
           +  S++   +L   G  + PV +++
Sbjct: 411 DRESAEASAELKLGGRFDPPVIRQA 435

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 57.6 bits (139), Expect = 5e-11
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQA 68
              + C V   P   + W RD  A+ +  +  +       +L++ ++ +++D   Y C A
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALPINRKQKV---FPNGTLIIENVERNSDQATYTCVA 599

Query: 69  SNNLGSSQQ---FIQLSGIPNIPVFQKSSRRLGPDG-YRLVWQVD 109
            N  G S +    +Q+  +P I  F              L   V 
Sbjct: 600 KNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 10  RAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF------G 62
            AEI C    NP  ++ W R DGTA+     +     S    L+    +  D+       
Sbjct: 56  GAEIECKASGNPMPEIIWIRSDGTAVGDVPGL--RQISSDGKLVFPPFRAEDYRQEVHAQ 113

Query: 63  NYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 97
            Y C A N  GS               ++    + 
Sbjct: 114 VYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 11  AEIICNV---YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNY 64
           A I C +    A+    V W  D       G      ++      L +R +   D + +Y
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 215

Query: 65  MCQASNNLGSSQQFIQ 80
            C+  + L    +   
Sbjct: 216 QCRTKHRLTGETRLSA 231

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.0 bits (151), Expect = 6e-14
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
          R  + C + +       W++DG  +     + + +   KH L++   K  D G + C+  
Sbjct: 27 RVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTE 85

Query: 70 NNLGSSQQFIQ 80
                   +Q
Sbjct: 86 GVSAFFGVTVQ 96

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           +  ++      P  +V W + G  +    R+ +  S       VR    +D G Y     
Sbjct: 41  QLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99

Query: 70  NNLGSSQQFIQLS 82
                    I++ 
Sbjct: 100 IENMKDTATIRIR 112

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A + C +  +  A VEW +    +  GGR  +     +  L +  +   D G Y C   
Sbjct: 25 TATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG 82

Query: 70 NNLGSSQQFIQ 80
              S+   ++
Sbjct: 83 QERTSATLTVR 93

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A I+C+V ++ P  + W   G  + L   +   V S  + L +R IK TD G Y C+   
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRI 176

Query: 71  NLGSSQQFIQLS 82
                  F  + 
Sbjct: 177 LARGEINFKDIQ 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 10 RAEIICNVYANPPAK-VEWFR-DGTAITLG-GRIDM-HVSSEKHSLLVRHIKDTDFGNYM 65
              +C V  +   K + WF  +G  ++    RI +     +  +L + +    D G Y 
Sbjct: 19 SKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78

Query: 66 CQASNNLGSSQ 76
          C  +   G+  
Sbjct: 79 CVVTAEDGTQS 89

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.3 bits (149), Expect = 1e-13
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 10 RAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
               C + + +      W   G  +    R        K+ L+VR    +D G  +   
Sbjct: 25 SCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV 84

Query: 69 SNNLGSSQQFIQ 80
                +   ++
Sbjct: 85 RGLTSKASLIVR 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 60.9 bits (148), Expect = 1e-13
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            + C V A P  ++ W +DG  + L              L++  I   D G Y C A++
Sbjct: 28 VTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------PVLILPEIGPQDQGTYSCVATH 78

Query: 71 NLGSSQ 76
          +    Q
Sbjct: 79 SSHGPQ 84

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 15 CNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
            V   P   V W R+   +     R           L +   +  D G Y C+A N  G
Sbjct: 27 IRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG 86

Query: 74 SSQQFIQLS 82
          + Q   +L 
Sbjct: 87 ARQCEARLE 95

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITL---GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
           A ++C    NP  ++ WF+D   +      GRI    S    +L +   +++D G Y C 
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185

Query: 68  ASNNLGSSQ 76
           A+N+ G+  
Sbjct: 186 ATNSAGTRY 194

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKD-TDFGNYMCQA 68
           A  IC    +P  K+ W + G  ++      +         L ++ ++   D   Y C A
Sbjct: 24  ASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83

Query: 69  SNNLGSSQQFIQLS------GIPNIPVFQK 92
           SNN+G      +L+           P    
Sbjct: 84  SNNVGEISVSTRLTVLREDQIPRGFPTIDM 113

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C    NP   + W ++ T + +        S +   L + + ++ D G Y C A N
Sbjct: 128 VLMTCKAIGNPTPNIYWIKNQTKVDMSNP---RYSLKDGFLQIENSREEDQGKYECVAEN 184

Query: 71  NLGSSQ 76
           ++G+  
Sbjct: 185 SMGTEH 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT----DFGNYMC 66
          A   C    +PP  + W ++G  ++        V  +   + +  I+      D   Y C
Sbjct: 24 ASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISILRIEPVRAGRDDAPYEC 82

Query: 67 QASNNLGSSQQ 77
           A N +G +  
Sbjct: 83 VAENGVGDAVS 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.4 bits (147), Expect = 2e-13
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
          + ++   +   A   C    +P A V W +    +   G+           L +  ++  
Sbjct: 15 LTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKA 73

Query: 60 DFGNYMCQASNNLGSSQQFIQ 80
          D   Y C        +Q  +Q
Sbjct: 74 DSDTYTCDIGQAQSRAQLLVQ 94

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNL 72
               +  AKV +  +   I  G +  MH+        + +  ++D D G Y  Q  +  
Sbjct: 25 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 84

Query: 73 GSSQ 76
           ++ 
Sbjct: 85 ATNH 88

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 1   MHSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
           +      +    + C V        + W++D   I++  + D        +LL+      
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKK 181

Query: 60  DFGNYMCQASNNLGSSQQFIQLSG 83
           D G Y     ++ G  +  ++L  
Sbjct: 182 DAGIYEVILKDDRGKDKSRLKLVD 205

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 61.1 bits (148), Expect = 2e-13
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 10  RAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFG 62
           + +I C + + P P ++ W      +  G      V +         +L + +I   DF 
Sbjct: 30  KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 89

Query: 63  -NYMCQASNNLGSSQQFIQLS 82
             Y C A N+ GS  + I+L 
Sbjct: 90  TIYNCTAWNSFGSDTEIIRLK 110

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 60.1 bits (146), Expect = 2e-13
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
          C    NP   + W ++G       RI    V ++  SL++  +  +D GNY C   N  G
Sbjct: 30 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 89

Query: 74 SSQQFIQL 81
          S      L
Sbjct: 90 SINHTYHL 97

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.5 bits (147), Expect = 3e-13
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 2   HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDT 59
             +T  +     + C V   P   + W  DG  +       M    +  HSL++  +   
Sbjct: 17  GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76

Query: 60  DFGNYMCQASNNLGSSQQFIQLS--GIPNIP 88
           D G Y C A+N  G +   ++L      + P
Sbjct: 77  DAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 9   MRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTD 60
            RA + C+    +PP++  WF+DG  +    +     S+  +        L+   +  +D
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182

Query: 61  FGNYMCQASNNLGSSQQFIQLS 82
            G Y C+A N  G+      + 
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFG 62
            ++ C        +VEW  D    T        +    +  V+     +  + +   D G
Sbjct: 22  VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81

Query: 63  NYMCQASNNLGSSQQFIQLSGI----PNIPVFQKSS 94
            Y C  S   G+S   +++  I    P+ P     S
Sbjct: 82  TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS 117

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 60.1 bits (146), Expect = 3e-13
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           +  +   + A+  A+V+W ++G  I + G +        K +L +      D   Y C  
Sbjct: 33  KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91

Query: 69  SNNLGSSQQFIQ 80
                S++ F++
Sbjct: 92  GGEKCSTELFVK 103

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 60.7 bits (147), Expect = 4e-13
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 7/76 (9%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFGNYM 65
          I  +V   P   + W  +G+ +     I                 L +      + GNY 
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 66 CQASNNLGSSQQFIQL 81
            A+N  G +   I  
Sbjct: 80 LLAANPFGQASASIMA 95

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 60.1 bits (146), Expect = 4e-13
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQA 68
            ++ C + A PP K+ W R+   +     RI ++   + + +LL++ +   D G Y   A
Sbjct: 33  VKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92

Query: 69  SNNLGSSQQFIQLS--GIPNIPV 89
            N  G +    +L     PN  +
Sbjct: 93  VNEAGVTTCNTRLDVTARPNQTL 115

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 59.8 bits (145), Expect = 4e-13
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           ++ C +  +    + W RDG  +    R  +        + VR     D G Y C  S+
Sbjct: 27 LQLRCRL-RDDVQSINWLRDGVQLVESNRTRI----TGEEVEVRDSIPADSGLYACVTSS 81

Query: 71 NLGSSQQFIQLS 82
            GS   +  ++
Sbjct: 82 PSGSDTTYFSVN 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 59.3 bits (144), Expect = 5e-13
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C +  +    + W RDG  +    R  +        + V+     D G Y C  S+  GS
Sbjct: 25 CRLRDDVQ-SINWLRDGVQLAESNRTRI----TGEEVEVQDSVPADSGLYACVTSSPSGS 79

Query: 75 SQQFIQLSGIPNIP 88
             +  ++    +P
Sbjct: 80 DTTYFSVNVSDALP 93

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 59.6 bits (145), Expect = 5e-13
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIK 57
          +   TA    R E+ C V +   A V+WF++G  I  G +    +  E  KH L++    
Sbjct: 14 LEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72

Query: 58 DTDFGNYMCQASNNLGSSQQFIQL 81
            D   Y    +    S++  + L
Sbjct: 73 KADAAEYSVMTTGGQSSAKLSVDL 96

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 62.5 bits (151), Expect = 8e-13
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 11  AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
            ++ C   ANPPA +  W     ++  G       +  +       I  +  G Y+C+A+
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAGTYICEAT 304

Query: 70  NNLGSSQQFIQLS 82
           N +G+    ++++
Sbjct: 305 NPIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 3/81 (3%)

Query: 5   TAPDMRAEIICNV-YANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDF 61
              D      C      PP+ V W             R      +      +   ++   
Sbjct: 147 GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQ 206

Query: 62  GNYMCQASNNLGSSQQFIQLS 82
            +  C  + ++   ++ + L+
Sbjct: 207 QSLACIVNYHMDRFKESLTLN 227

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 24/108 (22%)

Query: 11  AEIICNVYANPP----AKVEWFRDGTAI---------TLGGRID---------MHVSSEK 48
             + C+     P     +V W +              ++G  +          +  S   
Sbjct: 32  VVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91

Query: 49  HSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSGIPNIPVFQKSSR 95
            ++ +  ++  D G Y+C+ +    G+ +  + L+ +   P       
Sbjct: 92  GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT-VMAKPTNWIEGT 138

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 62.6 bits (152), Expect = 8e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
           I AP     ++C    NP   V+W  +G  +      + +      +++ R  + +    
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAV 381

Query: 64  YMCQASNNLGSSQQFIQLS 82
           Y C  SN  G       +S
Sbjct: 382 YQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 57.2 bits (138), Expect = 5e-11
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 8   DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
            M   + C     P   + W++ G  +           +   +L + ++ + D G Y C 
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCL 293

Query: 68  ASNNLGSSQQFIQLS 82
           ASN +GS +  I + 
Sbjct: 294 ASNKMGSIRHTISVR 308

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 57.2 bits (138), Expect = 6e-11
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR----HIKDT 59
           I  P     I C    NP     W R+     +     + +     +L++        + 
Sbjct: 28  IVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87

Query: 60  DFGNYMCQASNNLGSSQQ---FIQLSGIPNIPVFQKSS 94
             G Y C A N  G++      +Q+S  P  P      
Sbjct: 88  YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP 125

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 11  AEIICNVYA-NPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTD-FGNYMCQ 67
             + CN     P   + W       IT   R+          L   ++   D   +Y C 
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV---SQGHNGDLYFSNVMLQDMQTDYSCN 190

Query: 68  ASNNLGSSQQ---FIQLSGIPNIPVFQKSSRRLGP 99
           A  +   + Q      L  +    V +++   + P
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYP 225

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 62.5 bits (152), Expect = 8e-13
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
               C     P     W ++G  +    RI +    E+ +L +  +  +D G Y C A N
Sbjct: 313 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAEN 368

Query: 71  NLGSSQQFIQLS 82
             G      +LS
Sbjct: 369 KHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 56.8 bits (137), Expect = 9e-11
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFG 62
           + + + + ++ C V  NP   + W  +GT + +G   D   S    SLL+ +  K  D G
Sbjct: 19  LDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM--DFRYSVVDGSLLINNPNKTQDAG 76

Query: 63  NYMCQASNNLG---SSQQFIQLSGIPNIPV 89
            Y C A+N+ G   S +  +Q + + N   
Sbjct: 77  TYQCIATNSFGTIVSREAKLQFAYLENFKT 106

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 10  RAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             ++ C    NP   + W R DG  I    R           L + + +  D G+Y C A
Sbjct: 222 TVKLECFALGNPVPTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAGSYECVA 277

Query: 69  SNNLGSSQQFIQLS 82
            N+ G +    QL+
Sbjct: 278 ENSRGKNVAKGQLT 291

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 48.3 bits (115), Expect = 9e-08
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 11  AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             ++C     +      W  +        R    VS E  +L +  ++ +D GNY C  +
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNEYPSYQDNRR--FVSQETGNLYIAKVEKSDVGNYTCVVT 177

Query: 70  NNLGSSQQF 78
           N + + +  
Sbjct: 178 NTVTNHKVL 186

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 62.2 bits (150), Expect = 9e-13
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 4   ITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
            T      ++ C + YA     + W+++   + + G      S    +L++ + +  D G
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSG 195

Query: 63  NYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRR 96
            Y C    +    +  I +S    + V      R
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR 229

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 10/82 (12%)

Query: 10  RAEIICNVYANP----PAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTD 60
            A I C   +         ++W      I         + +        +L   ++ +  
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304

Query: 61  FGN-YMCQASNNLGSSQQFIQL 81
            GN Y C+  N          +
Sbjct: 305 IGNTYTCRGHNYYFDKTLTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 3   SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
           S   P +   ++ + Y +    V W + G       R  ++   +   L + +    D  
Sbjct: 48  SAKCPPIEDSLLSHRYNDKDNVVNWEKIGK-----TRRPLNRRVKNGDLWIANYTSNDSH 102

Query: 63  N-YMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 97
             Y+C  +   G   Q I  S I   P     +  L
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL 138

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 62.1 bits (151), Expect = 9e-13
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
           P     I C    +P   V+W +    +T    + +         ++      D  NY C
Sbjct: 219 PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTC 272

Query: 67  QASNNLGSSQQFIQLS--GIPNIPV 89
            A ++LG  +   Q++   +P    
Sbjct: 273 VAMSSLGVIEAVAQITVKSLPKAGT 297

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 59.5 bits (144), Expect = 7e-12
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A ++C    NP  ++ WF+D   +               +L +   ++TD G Y C A+N
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185

Query: 71  NLG---SSQQFIQLSGIPNIPVFQK 92
           + G   SS   + +      P F  
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSI 210

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.1 bits (130), Expect = 7e-10
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 4  ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT---- 59
          I      A  +C    +P  +V W + G  +       +       ++L   I+      
Sbjct: 17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL--RIQPLRTPR 74

Query: 60 DFGNYMCQASNNLGSSQQFIQLS 82
          D   Y C A N++G      +L+
Sbjct: 75 DENVYECVAQNSVGEITVHAKLT 97

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 58.9 bits (143), Expect = 9e-13
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             A + C + ++  A V+W      +  G +  +        L+VR+++  D G Y C  
Sbjct: 24  GAATLRCVL-SSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF 82

Query: 69  SNNLGSSQQFIQLSGIPNIP 88
            +   S+   +    +P+ P
Sbjct: 83  GDQTTSATLTVT--ALPSGP 100

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 61.0 bits (148), Expect = 9e-13
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 11  AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A + C     +P   + W +DG+ +         ++     L++ + + +D G Y+C  +
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGT 185

Query: 70  NNLGSSQ 76
           N +G  +
Sbjct: 186 NMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 44.8 bits (106), Expect = 9e-07
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSSEKHSLLVRHI-----KDTDFGN 63
          A + C     P   +EW++ G  +           +     SL    I        D G 
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86

Query: 64 YMCQASNNLGSS 75
          Y+C A N LG +
Sbjct: 87 YVCVARNYLGEA 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 58.5 bits (142), Expect = 1e-12
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAIT----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
          R E+   V +   A+V W ++G  +T       R       ++H L+   +   D G Y 
Sbjct: 25 RVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ 83

Query: 66 CQASNNLGSSQQFIQ 80
             +     ++  ++
Sbjct: 84 VITNGGQCEAELIVE 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 58.5 bits (142), Expect = 1e-12
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
          +      +     + C+V   P  ++ W  +G  I           +    L ++     
Sbjct: 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPE 74

Query: 60 DFGNYMCQASNNLGSSQ 76
          D G Y C A N LG   
Sbjct: 75 DHGTYTCLAENALGQVS 91

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQAS 69
            +  C    NP   + W ++G       RI    V ++  SL++  +  +D GNY C   
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96

Query: 70  NNLGSSQQFIQLS 82
           N  GS      L 
Sbjct: 97  NEYGSINHTYHLD 109

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRID-----------MHVSSEKHSLLVRHIKDT 59
            E +C VY++    ++W +           D              SS    L + ++ + 
Sbjct: 136 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA 195

Query: 60  DFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQK 92
           D G Y+C+ SN +G + Q   L+       P  +K
Sbjct: 196 DAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 10  RAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
            A + C+  +NP P    W          G +     ++   LL+R +        +C  
Sbjct: 234 EATLTCDARSNPEPTGYNWSTTM------GPLPPFAVAQGAQLLIRPVDKPINTTLICNV 287

Query: 69  SNNLGSSQQFIQLS 82
           +N LG+ Q  + + 
Sbjct: 288 TNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 8   DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGN 63
           +      C      PPA++ W  D   +    ++   +S   +     ++      D  N
Sbjct: 132 EPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKN 191

Query: 64  YMCQASNNLGSSQQ 77
             C+  +      Q
Sbjct: 192 VTCKVEHESFEKPQ 205

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 26/106 (24%)

Query: 11  AEIICNVYANPP-----AKVEWFRDGTAITLG------------------GRIDMHVSSE 47
             + C +          +++ W R G + ++                       +     
Sbjct: 18  VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77

Query: 48  KHSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSGI--PNIPVF 90
             SL +  ++  D GNY C       GS    I L  +  P     
Sbjct: 78  NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE 123

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
              + C    NP   + W +    +     I    S+    L + +I+  D G Y C+A 
Sbjct: 130 NVTLECFALGNPVPDIRWRKVLEPMPSTAEI----STSGAVLKIFNIQLEDEGIYECEAE 185

Query: 70  NNLGSSQQFIQLS 82
           N  G  +   ++ 
Sbjct: 186 NIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 53.4 bits (128), Expect = 7e-10
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 11  AEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
             ++C+   + P      W  +   + +       VS    +L + +++ +D GNY C  
Sbjct: 26  MVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV 85

Query: 69  SNNLGSSQQFIQLSGIPNIPVFQ 91
           S+   +   F +   +  IP   
Sbjct: 86  SSPSITKSVFSKFIPLIPIPERT 108

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 6   APDMRAEIICNVYANPPAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDT- 59
                A + C     P  +  W +    +        GR  +        L + +++ T 
Sbjct: 105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164

Query: 60  DFGNYMCQASNNLGSSQQFIQLS 82
           D G Y C A+N++GS+     L 
Sbjct: 165 DPGEYECNATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 11 AEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
            + CN+ ++    +   W ++G  +T   +   +         +   +  D G Y C  
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN-----MEYRINKPRAEDSGEYHCVY 75

Query: 69 SNNLGSSQQFIQLS 82
           + + + +    + 
Sbjct: 76 -HFVSAPKANATIE 88

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
               C     P   V W RDG  +    RI++        L    +   D G Y C A N
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAEN 367

Query: 71  NLGSSQQFIQLS 82
             G+     +L+
Sbjct: 368 KHGTVYASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 6   APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNY 64
           + + +  + C   ANPPA   W  +GT + +G   D         L++   +K  D G+Y
Sbjct: 20  SAEEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVAGDLVISNPVKAKDAGSY 77

Query: 65  MCQASNNLG---SSQQFIQLSGIPNIPV 89
            C A+N  G   S +  ++   +     
Sbjct: 78  QCVATNARGTVVSREASLRFGFLQEFSA 105

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C  + NP  +++W +        G       S +  L ++++   D G Y C+A N
Sbjct: 225 VTLECFAFGNPVPQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278

Query: 71  NLGSSQQFIQLS 82
             G      ++ 
Sbjct: 279 IKGRDTYQGRII 290

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 11  AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
               C+     P     W  +     +       VS    +L +   + +D GNY C A+
Sbjct: 119 VMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFAT 178

Query: 70  NNLGSSQQFIQLSGIPNIPVFQKSSRRLGP 99
           +++    + +       + +  + +R+  P
Sbjct: 179 SHIDFITKSVFSKFSQ-LSLAAEDARQYAP 207

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQAS 69
               C    NP   + W ++G       RI    +  ++ SL++  +  +D GNY C   
Sbjct: 33  VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 92

Query: 70  NNLGSSQQFIQLS---GIPNIPVFQ 91
           N  GS +Q   L      P+ P+ Q
Sbjct: 93  NKFGSIRQTYTLDVLERSPHRPILQ 117

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 11  AEIICNVYANPPAKVEWFR-----------DGTAITLGGRIDMHVSSEK-HSLLVRHIKD 58
            E  C VY++    ++W +           DGT      +  +  S E    L + ++ +
Sbjct: 132 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191

Query: 59  TDFGNYMCQASNNLGSSQQFIQLS 82
            D G Y+C+A+N +G +++   LS
Sbjct: 192 RDGGEYLCRATNFIGVAEKAFWLS 215

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 58.2 bits (141), Expect = 2e-12
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ 67
             A   C +       V WF D T +      ++       H L +R +   D G    +
Sbjct: 29  SSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88

Query: 68  ASNNLGSSQQFIQLSGIPNIPVFQKS 93
           A    G  +    L       VF +S
Sbjct: 89  A----GDQRASAALRVTEKPSVFSRS 110

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
              I C   +NP     +F++G  +      RI  H  +    LL +     D G Y C+
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288

Query: 68  ASNNLGSSQ 76
             N +G  Q
Sbjct: 289 VDNGVGKPQ 297

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C V   P   V W  +   ++ GGR  +        L+++ +K+ D G Y C+A+N
Sbjct: 327 VTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVT----DSGLVIKGVKNGDKGYYGCRATN 381

Query: 71  NLGSSQQFIQLS 82
             G       + 
Sbjct: 382 EHGDKYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 4   ITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
           +   +    + C +  N    K  W +DG +       +  +  ++ SL+    + +D G
Sbjct: 17  LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEG 75

Query: 63  NYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 93
           +Y C A    G   S     + + +   P     
Sbjct: 76  HYQCFAETPAGVASSRVISFRKTYLIASPAKTHE 109

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 8/75 (10%)

Query: 11  AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMH----VSSEKHSLLVRHIKDTD---FG 62
            ++ C +  A P   + W +  +       +        +    +L    +   D     
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177

Query: 63  NYMCQASNNLGSSQQ 77
            Y+C A N     + 
Sbjct: 178 KYVCTAKNAAVDEEV 192

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 60.8 bits (147), Expect = 3e-12
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQA 68
                C    NP   + W ++G       RI  + +  ++ SL++  +  +D GNY C  
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199

Query: 69  SNNLGSSQQFIQLS 82
            N  GS +Q   L 
Sbjct: 200 ENKFGSIRQTYTLD 213

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 11 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           E+ C      P     W +DGT +    R+ +        L V +    D G Y C+  
Sbjct: 26 VELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQR 81

Query: 70 NNLGSSQQFIQL 81
                  F   
Sbjct: 82 LTQRVLCHFSVR 93

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%)

Query: 11  AEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKHSLLVRHIK 57
            E  C VY++    ++W +    +G+ +   G   + V           E   L + ++ 
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299

Query: 58  DTDFGNYMCQASNNLGSSQQFIQLS 82
             D G Y C A N++G S     L 
Sbjct: 300 FEDAGEYTCLAGNSIGFSHHSAWLV 324

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 57.3 bits (139), Expect = 4e-12
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C +  N P   +W ++G  +    R+ +      H L++ +    D G+Y+    
Sbjct: 24 EICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD 81

Query: 70 NNLGSSQQFIQLSGIPN 86
              +    + +   P+
Sbjct: 82 AYNVTLPAKVHVISGPS 98

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 4/71 (5%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
                   A P  +  W     +       +       +S+          G Y+  A N
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFHAEN 399

Query: 71  NLGSSQQFIQL 81
           +     +   L
Sbjct: 400 DDAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 57.4 bits (138), Expect = 5e-11
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             +   V A       W    +++      D+       S+++  + +T  G Y+    +
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQS 124

Query: 71  NLGSSQQFIQLSGIPNIPVF--QKSSRRLGPDGYRLVWQVDTY 111
              +      +S I N  ++  ++   R   +   LV   ++ 
Sbjct: 125 EATNYTILFTVS-IRNTLLYTLRRPYFRKMENQDALVCISESV 166

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 56.6 bits (136), Expect = 9e-11
 Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 7/79 (8%)

Query: 6   APDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH------SLLVRHIKD 58
                  I C     N    + W  +  A+  G   +M   S            V  +  
Sbjct: 240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299

Query: 59  TDFGNYMCQASNNLGSSQQ 77
            D G Y C +S +   S  
Sbjct: 300 NDTGYYTCSSSKHPSQSAL 318

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 13  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
           ++C   + P   VEW    +           V  ++  +    + +    +  C A N L
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGTDIRCCARNEL 214

Query: 73  GSSQ 76
           G   
Sbjct: 215 GREC 218

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 4/71 (5%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
                   A P  +  W     +       +       +S+          G Y+  A N
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFHAEN 399

Query: 71  NLGSSQQFIQL 81
           +     +   L
Sbjct: 400 DDAQFTKMFTL 410

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 57.4 bits (138), Expect = 6e-11
 Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             +   V A       W    +++      D+  +    S+++  + +T  G Y+    +
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQS 124

Query: 71  NLGSSQQFIQL 81
              +      +
Sbjct: 125 EATNYTILFTV 135

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 54.3 bits (130), Expect = 7e-10
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 10  RAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH------SLLVRHIKDTDFG 62
              I C     N    + W  +  A+  G   +M   S            V  +   D G
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303

Query: 63  NYMCQASNNLGSS 75
            Y C +S +   S
Sbjct: 304 YYTCSSSKHPSQS 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 51.6 bits (123), Expect = 6e-09
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 3   SITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHS----------L 51
            + A    ++  C     P     W +    +      I   V + K +           
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476

Query: 52  LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
            +   +        C A N+LG+S + I L+
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 13  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
           ++C   + P   VEW    +           V  ++     + + +    +  C A N L
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE----KVLHELFGTDIRCCARNEL 214

Query: 73  G---SSQQFIQLSGIPNIPVFQKS 93
           G   +    I L+  P   + Q  
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQLF 238

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 57.0 bits (138), Expect = 6e-12
 Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 9  MRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTDFGNYMC 66
          M     C V  NP  K+ WF+DG  I+                SL        D GNY  
Sbjct: 24 MPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83

Query: 67 QASNNLGSSQ 76
           A+N  G   
Sbjct: 84 MAANPQGRIS 93

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 56.2 bits (136), Expect = 8e-12
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C    +P    +WF++   +T            K   +V ++     G Y C   N+  S
Sbjct: 25 CVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCHVYNDRDS 75

Query: 75 SQ 76
            
Sbjct: 76 QD 77

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 15  CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
           C +  N     + W++D +   +       +   K  L     K  D G+Y C   N+  
Sbjct: 27  CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86

Query: 74  SSQQFIQLSGIPNIPVFQKSSR 95
             +  I    + N P    +++
Sbjct: 87  CLRIKISAKFVENEPNLCYNAQ 108

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRI------------DMHVSSEKHSLLVRHIK 57
           + ++ICNV         W  +G+ I     +            +   S+    L +  I+
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285

Query: 58  DTDF-GNYMCQASNNLGSSQQFIQL 81
              +   + C A N  G    +IQL
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 11  AEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
             ++C          N   K++W++D   + L      H S  K  L+V ++ +   GNY
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGNY 177

Query: 65  MCQASNNLGSSQ 76
            C AS      Q
Sbjct: 178 TCHASYTYLGKQ 189

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C    +P    +WF++   +T            K   +V ++     G Y C   N
Sbjct: 136 LVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCHVYN 186

Query: 71  NLGSSQ 76
           +  S  
Sbjct: 187 DRDSQD 192

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 54.5 bits (131), Expect = 3e-10
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C    +P  + +WF+    I          +     L+   +   D G Y+C+ +NN   
Sbjct: 40 CRATGHPFVQYQWFKMNKEIP---------NGNTSELIFNAVHVKDAGFYVCRVNNNFTF 90

Query: 75 SQQ 77
             
Sbjct: 91 EFS 93

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
                +P   + W ++ +A T+ G  +  + ++  +L +      D G Y+C   N    
Sbjct: 47  LWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC 106

Query: 75  SQQFIQLS 82
            +  I+L 
Sbjct: 107 DKMSIELR 114

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            ++          K++W++D   +       + V      LLV  +   D G Y C  + 
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTF 201

Query: 71  NLGSSQQFIQLS 82
                Q  I  S
Sbjct: 202 AHEGQQYNITRS 213

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%)

Query: 7   PDMRAEIICNVYA---NPPAKVEWFR----------DGTAITLGGRIDMHVSSEK---HS 50
              R  I C V+     P   + W+            G  +T G R +   ++E      
Sbjct: 240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVP 299

Query: 51  LLVRHIKDTDFG-NYMCQASNNLGSSQQFIQL 81
           L+   +   D   ++ C   N L        +
Sbjct: 300 LIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
               C   A       W+ +G ++ +  R  + +S+   +L + ++   D   Y+C   N
Sbjct: 485 VAFTCEPEAQNTT-YLWWVNGQSLPVSPR--LQLSNGNRTLTLFNVTRNDARAYVCGIQN 541

Query: 71  NLGSSQ 76
           ++ +++
Sbjct: 542 SVSANR 547

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 57.7 bits (139), Expect = 5e-11
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 11/73 (15%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
              + C+  +NP  +  W  +G                   L +  I   + G Y C  S
Sbjct: 576 NLNLSCHSASNPSPQYSWRINGIPQQHTQ-----------VLFIAKITPNNNGTYACFVS 624

Query: 70  NNLGSSQQFIQLS 82
           N        I  S
Sbjct: 625 NLATGRNNSIVKS 637

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C+  +NPPA+  WF +GT                  L + +I   + G+Y CQA N
Sbjct: 221 LNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHN 269

Query: 71  NLGSSQQ----FIQLSGIPNIPVFQKSSRRLGPDG 101
           +     +     I +   P  P    ++     D 
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 6   APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
            P +   + C+  +NPPA+  W  DG                   L + +I + + G Y 
Sbjct: 394 RPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYT 442

Query: 66  CQASNNLGSSQQ--FIQLSGIPNIPVFQKSS 94
           CQA+N+     +     ++    +P    SS
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISS 473

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.3 bits (133), Expect = 3e-10
 Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
               C           W+ +  ++ +  R  + +S+   +L + ++   D  +Y C+  N
Sbjct: 129 VAFTCEPETQDA-TYLWWVNNQSLPVSPR--LQLSNGNRTLTLFNVTRNDTASYKCETQN 185

Query: 71  NLGSSQQ---FIQLSGIPNIPVFQKSS 94
            + + +     + +   P+ P     +
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLN 212

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG- 73
           C           W+ +  ++ +  R+   +S++  +L +  +   D G Y C   N L  
Sbjct: 311 CEPEIQNTT-YLWWVNNQSLPVSPRL--QLSNDNRTLTLLSVTRNDVGPYECGIQNELSV 367

Query: 74  --SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ 107
             S    + +   P+ P    S     P G  L   
Sbjct: 368 DHSDPVILNVLYGPDDPTISPSYTYYRP-GVNLSLS 402

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 17/101 (16%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH----------------SLLVR 54
             ++ +          W++          I   + +++                 SLL++
Sbjct: 17  VLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQ 76

Query: 55  HIKDTDFGNYMCQASNNL-GSSQQFIQLSGIPNIPVFQKSS 94
           +I   D G Y      +   + +   Q    P +P    SS
Sbjct: 77  NIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 58.1 bits (140), Expect = 1e-11
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 9   MRAEIICNVY-ANPPAKVEWFRDGTAITLGGRID--------MHVSSEKHSLLVRHIKDT 59
            RA + C+ +  +PP++  WF+DG ++                 +  +   L+   +   
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 60  DFGNYMCQASNNLGSSQQFIQL 81
           D G Y CQA N  G++ +    
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 14/109 (12%)

Query: 11  AEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFG 62
            ++ C        +VEW    G+   L        +            +    +   D G
Sbjct: 19  IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNG 78

Query: 63  NYMCQASNNLGS--SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQ 107
            Y C  S   G    +  I L+ +  P+ P     S      G R V  
Sbjct: 79  EYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSV--TIGNRAVLT 125

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 7/88 (7%)

Query: 1   MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-------HSLLV 53
                       I  +V   P   + W  +G+ +     I                 L +
Sbjct: 254 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313

Query: 54  RHIKDTDFGNYMCQASNNLGSSQQFIQL 81
                 + GNY   A+N  G +   I  
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C V      +  W       +        + S     L     D +  N  C A N
Sbjct: 176 VLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL-GLTLANVTSDLNRKNVTCWAEN 234

Query: 71  NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD 109
           ++G ++  +Q+    + P   +    +    + + + VD
Sbjct: 235 DVGRAEVSVQV--NVSFPASVQLHTAVEMHHWCIPFSVD 271

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQ 67
              ++C     P     W++     T    + +   V     +L+++     D G Y+C 
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288

Query: 68  ASNNLGSSQQFIQLS 82
            +N++G       L+
Sbjct: 289 VNNSVGGESVETVLT 303

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 55.3 bits (133), Expect = 3e-10
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A   C    NP   V W +DG AI                L +  +K  D G Y C   N
Sbjct: 325 AVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRN 374

Query: 71  NLGSSQQFIQLS 82
           +  S++   +L 
Sbjct: 375 DRESAEASAELK 386

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 7   PDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF---- 61
               AEI C    NP  ++ W R DGTA+     +    S     L+    +  D+    
Sbjct: 18  NSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GKLVFPPFRAEDYRQEV 75

Query: 62  --GNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 93
               Y C A N  G   S    ++             
Sbjct: 76  HAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK 112

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 11  AEIICNV---YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNY 64
           A I C +    A+    V W  D       G      ++      L +R +   D + +Y
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 180

Query: 65  MCQASNNLGSSQQF 78
            C+  + L    + 
Sbjct: 181 QCRTKHRLTGETRL 194

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C    +P   + W +DG  ++           E   L +R+ K  D G Y C AS
Sbjct: 25 TFVLSCVATGSPVPTILWRKDGVLVSTQDSR--IKQLENGVLQIRYAKLGDTGRYTCIAS 82

Query: 70 NNLGSSQQFIQL 81
             G +     +
Sbjct: 83 TPSGEATWSAYI 94

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 57.0 bits (137), Expect = 3e-11
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 10  RAEIICNVYANPPA-KVEWFRDGTAI------TLGGRIDMHVSSEKHSLLVRHIKDT-DF 61
            A ++C   + PP     W++   +           R  +  S  +  L + ++    D 
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159

Query: 62  GNYMCQASNNLGSSQQFIQL 81
           G Y C  +++ GS Q  I L
Sbjct: 160 GQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 50.4 bits (120), Expect = 6e-09
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 10/95 (10%)

Query: 1  MHSITAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD 58
            ++     +  + C++  +        W + G  +          +        +   D
Sbjct: 6  FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVDSD 58

Query: 59 TDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS 93
            +G Y C        +   IQL G P +   + S
Sbjct: 59 DQWGEYSCVFLPEPMGTAN-IQLHGPPRVKAVKSS 92

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQA 68
           ++ C+V       ++W +DG  +    ++ + VS +     L ++ ++ +D G Y CQ 
Sbjct: 20 VKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79

Query: 69 SNNLGSSQ 76
           +   +  
Sbjct: 80 EDGGETEI 87

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 6   APDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
            P+   ++ C     P P  + W+R  T I                 ++     T    +
Sbjct: 111 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG---------GPAPSPSVLNVTGVTQSTMF 161

Query: 65  MCQASNNLGSSQ 76
            C+A N  G + 
Sbjct: 162 SCEAHNLKGLAS 173

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 57.7 bits (139), Expect = 3e-11
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 9   MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYM 65
             A+I+C+  +      V    + T + +  + D H +  +   +L +  +     GNY 
Sbjct: 202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYS 261

Query: 66  CQASNNLGSSQQFIQL 81
           C ASN  G     +  
Sbjct: 262 CVASNVQGKHSTSMFF 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 9/89 (10%)

Query: 11  AEIICNVYA-NPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
           A + C +      A V   R  G  +           S  H   +   K     +Y C A
Sbjct: 107 ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNY---SFSPWHGFTIHRAKFIQSQDYQCSA 163

Query: 69  SNNLGSSQ----QFIQLSGIPNIPVFQKS 93
                       +      IP  P     
Sbjct: 164 LMGGRKVMSISIRLKVQKVIPGPPALTLV 192

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 9/81 (11%)

Query: 2  HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
            +  P     + C         VEW              ++       L   +    + 
Sbjct: 13 ELVVKPGATVTLRCVG----NGSVEWDGP-----PSPHWTLYSDGSSSILSTNNATFQNT 63

Query: 62 GNYMCQASNNLGSSQQFIQLS 82
          G Y C    +       I L 
Sbjct: 64 GTYRCTEPGDPLGGSAAIHLY 84

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 11  AEIICN-VYANPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNY 64
           A + C      P   + W +DG  +     +    SS     +  +LL+ +++  D GNY
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185

Query: 65  MCQASNNLGSSQ 76
            C A N +G+ +
Sbjct: 186 KCIAQNLVGTRE 197

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS----SEKHSLLVRHIKDTDFGNYMC 66
           A + C V   P   +EWF+DG  ++   +    V     +      ++  K+ D G Y C
Sbjct: 27  ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86

Query: 67  QASNNLG---SSQQFIQLSGIPNIPVFQK 92
            A N +G   S    +Q++ +     F+ 
Sbjct: 87  VAKNRVGQAVSRHASLQIAVLR--DDFRV 113

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 55.1 bits (133), Expect = 4e-11
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 1  MHSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 59
          + +  A +   A + C +  +  A VEW++    +  G R  +     +  L +R +   
Sbjct: 26 LRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAE 83

Query: 60 DFGNYMCQASN 70
          D G Y+C    
Sbjct: 84 DAGEYLCMCGK 94

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           A   C V A+ P  V W +D   +    +     +   + L +  +K  D G Y  +A N
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559

Query: 71  NLGSSQQFIQL 81
           + G+ ++ + L
Sbjct: 560 SYGTKEEIVFL 570

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 53.9 bits (130), Expect = 7e-11
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 6  APDMRAEIICNVYANPPAKVEWFRDGTAI-TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
          A D  A + C    +P   + W ++G        R  +    E+ +L +++++ +D G Y
Sbjct: 21 AVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRISDTGTY 77

Query: 65 MCQASNNLGSSQQFIQLS 82
           C A+++ G +     L 
Sbjct: 78 TCVATSSSGETSWSAVLD 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 53.3 bits (128), Expect = 1e-10
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
              IC   + +P   + W R        G++          L +R+++ +D G Y+C  
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH-----NGKLPSRAMDFNGILTIRNVQPSDAGTYVCTG 81

Query: 69 SNNLGSSQQFIQLS 82
          SN     Q    L 
Sbjct: 82 SNMFAMDQGTATLH 95

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 6   APDMRAEIICNVYANP-PAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDT 59
                 ++I    A P P   +W       T          +         L +  +K T
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385

Query: 60  DFGNYMCQASNNLGSSQQFIQLS 82
           + G Y    SN+  ++     + 
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFNVY 408

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 10  RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGN 63
              + C +   +      W R+ +   L  + +     + +     +L +   +  D G 
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV 287

Query: 64  YMCQASNNLGSSQQFIQLS--GIPNIPVF 90
           +MC A+N  GS+     L       I +F
Sbjct: 288 FMCYANNTFGSANVTTTLEVVDKGFINIF 316

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 4   ITAPD-MRAEIICNVYANPPAKVEWF-------RDGTAITLGGRIDMHVSSEKH-----S 50
           +T    +   + C     P   ++W+       R   ++       ++ S          
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475

Query: 51  LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPV 89
             +        G   C+A N++G +  +   +  G     +
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI 516

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 5/66 (7%), Positives = 14/66 (21%), Gaps = 1/66 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C +  +P       +      L   +      +   ++    +        C    
Sbjct: 132 TLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ 190

Query: 71  NLGSSQ 76
              S  
Sbjct: 191 EGKSVL 196

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             ++C      P  V+W  +         +D    ++++  +    + T+ G Y C   +
Sbjct: 54  IRLLCTD----PGFVKWTFEI--------LDETNENKQNEWITEKAEATNTGKYTCTNKH 101

Query: 71  NLGSS 75
            L +S
Sbjct: 102 GLSNS 106

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 9   MRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
              ++ C     + P + EW +   + T+              + V++      G Y C 
Sbjct: 137 NDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP--WLAEMTSPVISVKNASSEYSGTYSCT 194

Query: 68  ASNNLGSSQQFIQLS 82
             N +GS Q  ++L 
Sbjct: 195 VQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 30/114 (26%)

Query: 11  AEIICNVYANP----PAKVEWFRDGTAIT---------------------LGGRI---DM 42
           A + C    +P    P  +EW    +                        L GR+     
Sbjct: 18  AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN 77

Query: 43  HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSS 94
            V S   S+ V +++ +D G Y C+     G + +   L+    P+        
Sbjct: 78  DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDG 131

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 3   SITAP-DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
           + T P + +   +C  + NP  +++  +DGT     G                 +     
Sbjct: 379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES-------------VTVTRDLE 425

Query: 62  GNYMCQASNNLGSSQQFIQLS 82
           G Y+C+A +  G   + + ++
Sbjct: 426 GTYLCRARSTQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 11  AEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
             + C V    P     V   R    +    R        + +  V   +D    N+ C+
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCR 160

Query: 68  ASNNLGS 74
              +L  
Sbjct: 161 TELDLRP 167

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 5/72 (6%), Positives = 18/72 (25%), Gaps = 12/72 (16%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             + C  +      +                      +  LL++   + +  ++ C A+ 
Sbjct: 301 VTVKCEAHPRAKVTLNGVPAQP------------LGPRAQLLLKATPEDNGRSFSCSATL 348

Query: 71  NLGSSQQFIQLS 82
            +         +
Sbjct: 349 EVAGQLIHKNQT 360

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGNY 64
              ++C V  N     EW                   +        L +   +  D G Y
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257

Query: 65  MCQASNNLGSSQQFIQLS 82
            C  + ++   Q    ++
Sbjct: 258 TCNVTESVNDHQDEKAIN 275

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 13/98 (13%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C V  +P   V        + L    D                  +  +Y+C+ + 
Sbjct: 113 ITIPCRV-TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF---------EDRSYICKTTI 162

Query: 71  NLG---SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 105
                 S   ++    + +I V   + + +   G  + 
Sbjct: 163 GDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 13/72 (18%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
              +C  + NP  +++  +DGT     G                 +     G Y+C+A +
Sbjct: 203 QTPMCQAWGNPLPELKCLKDGTFPLPIGES-------------VTVTRDLEGTYLCRARS 249

Query: 71  NLGSSQQFIQLS 82
             G   + + ++
Sbjct: 250 TQGEVTREVTVN 261

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 55.0 bits (132), Expect = 3e-10
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 9   MRAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
             A+I+C+            + G     I L      +   +  +L +  +   D G Y 
Sbjct: 202 EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261

Query: 66  CQASNNLGSSQQFIQLS 82
           C ASN++G+    +   
Sbjct: 262 CVASNDVGTRTATMNFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 11  AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A + C +        V   R+G    L     ++  S     ++R  K  D   Y+C+  
Sbjct: 107 AVLPCLITDPALKDSVSLMREGGRQVLRKT--VYFFSPWRGFIIRKAKVLDSNTYVCKTM 164

Query: 70  NNLGSSQ-QFIQL---SGIPNIPVFQKSSRRL 97
            N   S    I L      P  P  +    +L
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKL 196

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 36.5 bits (84), Expect = 9e-04
 Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 9/73 (12%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C         VEW    +         +   S   +L  R+    + G Y C   
Sbjct: 21 TVTLRCVS----NGSVEWDGPISP-----YWTLDPESPGSTLTTRNATFKNTGTYRCTEL 71

Query: 70 NNLGSSQQFIQLS 82
           +  +    I L 
Sbjct: 72 EDPMAGSTTIHLY 84

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 9   MRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE-------KHSLLVRHIKDTD 60
               ++C +   +      W +         ++  +           + +L +   +  D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

Query: 61  FGNYMCQASNNLGSSQQFIQL 81
            G +MC A+N  GS+     L
Sbjct: 264 SGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 8/108 (7%)

Query: 4   ITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
               D  A + C +     ++      DG ++          + +    +    +     
Sbjct: 102 FGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITIKNVKRAYHRL 159

Query: 63  NYMCQASNNLG---SSQQFIQLSGIPNIP--VFQKSSRRLGPDGYRLV 105
              C A  +     S +  +++         V    +  L   G    
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C      P  V W             +  V ++K+  +    + T  G Y C  S
Sbjct: 29 TLSLTCID----PDFVRWTFKT-------YFNEMVENKKNEWIQEKAEATRTGTYTCSNS 77

Query: 70 NNLGSSQQ-FIQLSGIPNIP 88
          N L SS   F++      + 
Sbjct: 78 NGLTSSIYVFVRDPAKLFLV 97

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 53.9 bits (129), Expect = 4e-10
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 17/86 (19%)

Query: 14  ICNVYANPPAKVEWFRDGTAIT-----------------LGGRIDMHVSSEKHSLLVRHI 56
              V   P  +V WF+ G                       G  D+H S+    L+V   
Sbjct: 15  WRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 74

Query: 57  KDTDFGNYMCQASNNLGSSQQFIQLS 82
             +  GNY+C+         +   LS
Sbjct: 75  NISHDGNYLCRMKLGETEVTKQEHLS 100

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 50.4 bits (120), Expect = 8e-09
 Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 4/71 (5%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITL----GGRIDMHVSSEKHSLLVRHIKDTDFGNYM 65
              + C V A P   V+W              G +           +   +         
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVT 180

Query: 66  CQASNNLGSSQ 76
           C   N+   + 
Sbjct: 181 CVGKNDKEEAH 191

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 53.8 bits (129), Expect = 4e-10
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 18/105 (17%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 53
            E+ C        +  W        LG               R D   S        L++
Sbjct: 13  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72

Query: 54  RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSSRRL 97
           +++K  D   Y+C+  +     Q     L+   +  + Q  S  L
Sbjct: 73  KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 117

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 52.7 bits (126), Expect = 9e-10
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             +           V+          GG+          +L V  ++  D G + C    
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 164

Query: 71  NLGSSQQFIQLSGIPNIPVFQKSS 94
           N    +  I +     +  FQK+S
Sbjct: 165 NQKKVEFKIDIV----VLAFQKAS 184

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 20  NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
           +  A ++W  +  ++ L  R  M +S     L +  IK  D G Y C+ SN +   +
Sbjct: 136 DIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 15/100 (15%)

Query: 6   APDMRAEIICNVY----ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS----------L 51
            P     I C VY     +   +V W  DG              S  HS          L
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298

Query: 52  LVRHIKDTDFG-NYMCQASNNLGSSQQFIQLSGIPNIPVF 90
            ++ +   D   +Y+C A +  G   +  ++      P +
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRY 338

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 6   APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-----HVSSEKHSLLVRHIKDTD 60
             +   +   +   +    + W+       L   I+       +S EK  L  R     D
Sbjct: 31  LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90

Query: 61  FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSR 95
            GNY C   N    S+    L  +     F    +
Sbjct: 91  TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMK 125

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 4/62 (6%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
               ++    + W+     I     +      E  +L       ++ GNY C  +     
Sbjct: 147 GYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLSFLIALISNNGNYTCVVTYPENG 202

Query: 75  SQ 76
             
Sbjct: 203 RT 204

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
              + C  Y  P +++ W  +   I          S E H  L    +    G Y+C   
Sbjct: 130 TVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187

Query: 70  NNLGSSQQF 78
            +      F
Sbjct: 188 GSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 42.6 bits (99), Expect = 6e-06
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 15 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
          C+        + WF+DG  I          +      L  + KD   G Y C+ S N   
Sbjct: 25 CDA---EAKNITWFKDGKMIGFLTEDKKKWN------LGSNAKD-PRGMYQCKGSQNKSK 74

Query: 75 SQQFIQLSGIPNIPVFQKSSRRLGP 99
            Q     G  +      + +    
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAK 99

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 12/83 (14%)

Query: 11  AEIICNVYANPPAK---VEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 58
                 V      K   V+WF+          G  + L    D         L +   + 
Sbjct: 22  ITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81

Query: 59  TDFGNYMCQASNNLGSSQQFIQL 81
              G+Y C+ S           L
Sbjct: 82  AFTGSYRCEVSTKDKFDCSNFNL 104

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 1   MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR---HIK 57
           +  +       E+ C     P A+V W      +  G     +   E+    V     I 
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN 183

Query: 58  DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRR 96
            T    + C             +L  IP +P+    + R
Sbjct: 184 TTTNEIFYCTFRRLDPEENHTAELV-IPELPLAHPPNER 221

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 18/102 (17%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 53
            E+ C        +  W        LG               R D   S        L++
Sbjct: 12  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71

Query: 54  RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSS 94
           +++K  D   Y+C+  +     Q     L+   +  + Q  S
Sbjct: 72  KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQS 113

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 51.3 bits (122), Expect = 7e-09
 Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 10/88 (11%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             +           V+          GG+          +L V  ++  D G + C    
Sbjct: 114 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 163

Query: 71  NLGSSQQFIQLSGIPNIPVFQKSSRRLG 98
           N    +  I +  +          ++ G
Sbjct: 164 NQKKVEFKIDIVVLAFQKASSIVYKKEG 191

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 4/66 (6%)

Query: 20  NPPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQASNNLGSS 75
                 +      ++    +       +K     +L     +    GN         G  
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL 283

Query: 76  QQFIQL 81
            Q + L
Sbjct: 284 HQEVNL 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 9   MRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
              + +C    +PP  + W       ++      + V  +  +L VR+ +  D G Y+C 
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTLEVRYAQVQDNGTYLCI 459

Query: 68  ASNNLGSSQQFIQL 81
           A+N  G+      L
Sbjct: 460 AANAGGNDSMPAHL 473

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 51.1 bits (122), Expect = 5e-09
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 15  CNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH---------SLLVRHIKDTDFGNY 64
           C +     P +V W RDG  + L       V   +           L +  ++ +D G Y
Sbjct: 24  CQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQY 83

Query: 65  MCQASNNLG---SSQQFIQLSGIPNI 87
            C          S   ++ L G+P  
Sbjct: 84  QCLVFLGHQTFVSQPGYVGLEGLPYF 109

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 6   APDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
           A +    + C     P P  + W +D   +             + SL V  +  T   ++
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLNKT--SSF 171

Query: 65  MCQASNNLGSSQ 76
            C+A N  G + 
Sbjct: 172 SCEAHNAKGVTT 183

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 51.1 bits (122), Expect = 8e-09
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 11  AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C+ + +     V ++R+G A                +L +     +  G Y C   
Sbjct: 100 LALRCHAWKDKLVYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCSGM 151

Query: 70  NNLG--SSQQFIQLSGIPNIPVFQKSS 94
                 S+   + +  +   PV   S 
Sbjct: 152 GKHRYTSAGISVTVKELFPAPVLNASV 178

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
          C V   P  +  +WF +GTA            +   S  +      D G Y CQ   +  
Sbjct: 23 CEVLHLPGSSSTQWFLNGTAT----------QTSTPSYRITSASVNDSGEYRCQRGLSGR 72

Query: 74 SSQQFIQLSGIPNIPVFQKS 93
          S    +++     +      
Sbjct: 73 SDPIQLEIHRGWLLLQVSSR 92

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 7/73 (9%), Positives = 18/73 (24%), Gaps = 13/73 (17%)

Query: 10  RAEIICNVYANPPA-----KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
              + C                ++     +           +      +   +  D G Y
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTL--------RGRNTSSEYQILTARREDSGLY 238

Query: 65  MCQASNNLGSSQQ 77
            C+A+   G+  +
Sbjct: 239 WCEAATEDGNVLK 251

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 49.8 bits (119), Expect = 9e-09
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 11/76 (14%)

Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
          C    +P    ++WF +G  I           +           + D G Y CQ      
Sbjct: 26 CQGARSPESDSIQWFHNGNLI----------PTHTQPSYRFKANNNDSGEYTCQTGQTSL 75

Query: 74 SSQQFIQLSGIPNIPV 89
          S    + +     +  
Sbjct: 76 SDPVHLTVLFEWLVLQ 91

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 47.1 bits (112), Expect = 8e-08
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 11  AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C+ + + P  KV +F++G +           S    +  +     +  G+Y C  +
Sbjct: 103 IMLRCHSWKDKPLVKVTFFQNGKSQ--------KFSHLDPTFSIPQANHSHSGDYHCTGN 154

Query: 70  NNLGSSQ 76
                  
Sbjct: 155 IGYTLFS 161

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C+       KV        +   G  +  VS     L  + ++  D G Y C A  
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLFFKKVQVEDGGVYTCYAMG 322

Query: 71  NLGSSQQFIQL 81
              +    ++L
Sbjct: 323 ETFNETLSVEL 333

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 23/105 (21%)

Query: 15  CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
           CN       +  +WF +G+                 SL + + K  D G Y CQ      
Sbjct: 26  CNGNNFFEVSSTKWFHNGSLS----------EETNSSLNIVNAKFEDSGEYKCQHQQVNE 75

Query: 74  SSQQFIQLSGIPNI------PVFQKSSRRL------GPDGYRLVW 106
           S   ++++     +       V +     L        D Y++++
Sbjct: 76  SEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY 120

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 11  AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C+ + N    KV +++DG A+            E H++ + +    D G Y C   
Sbjct: 103 LFLRCHGWRNWDVYKVIYYKDGEAL--------KYWYENHNISITNATVEDSGTYYCTGK 154

Query: 70  NNLGSSQ 76
                 +
Sbjct: 155 VWQLDYE 161

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 2   HSITAPD-MRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDMH------VSSE 47
            S         E+ C    +P  +++W+ +G            G R+D            
Sbjct: 29  LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88

Query: 48  KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
             ++ +  + + D G Y C+ASN+   + 
Sbjct: 89  ASTISIDTLVEEDTGTYECRASNDPDRNH 117

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHI-----KDTDFGN 63
          A + C     P   +EW++ G  +           +     SL    I        D G 
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86

Query: 64 YMCQASNNLGSS 75
          Y+C A N LG +
Sbjct: 87 YVCVARNYLGEA 98

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 47.9 bits (114), Expect = 5e-08
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
          C    +P     +WF + + I          SS+  S  +      D G Y CQ + +  
Sbjct: 29 CQGAYSPEDNSTQWFHNESLI----------SSQASSYFIDAATVNDSGEYRCQTNLSTL 78

Query: 74 SSQQFIQLSGIPNIPV 89
          S    +++     +  
Sbjct: 79 SDPVQLEVHIGWLLLQ 94

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 9/61 (14%)

Query: 15  CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
           C+ + N    KV + ++G                     +      D G+Y C+      
Sbjct: 110 CHSWKNTALHKVTYLQNGKDR--------KYFHHNSDFHIPKATLKDSGSYFCRGLVGSK 161

Query: 74  S 74
           +
Sbjct: 162 N 162

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 46.9 bits (111), Expect = 7e-08
 Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 18/101 (17%)

Query: 11  AEIICNVYANPPA---KVEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 58
              I  V A        ++WF+          G  + L    + H       + +   KD
Sbjct: 25  ITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84

Query: 59  TDFGNYMCQASNNLGSSQQFIQL------SGIPNIPVFQKS 93
              GNY C+ +           L         PNI     S
Sbjct: 85  NFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 21/93 (22%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH--------------------- 49
             + C       A V W+   T             + K+                     
Sbjct: 154 ITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR 213

Query: 50  SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
           +L++R  K TD G   C+ +   G        +
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 3   SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
            I+   +   + C V      ++  ++DG  + L  R           ++      +   
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSA 158

Query: 63  NYMCQASNNLGSSQQFIQLS 82
            + C A N +        +S
Sbjct: 159 KFKCTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 2  HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
           S    D   +I     ++     ++ ++           +  +    +L ++H+K  D 
Sbjct: 22 PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQ 78

Query: 62 GNYMCQASNNLGSS 75
            Y     +  G +
Sbjct: 79 DIYKVSIYDTKGKN 92

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 11/76 (14%)

Query: 15 CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
          C    +P     +WF + + I          SS+  S  +      D G Y CQ   +  
Sbjct: 29 CQGAYSPEDQSTQWFHNESLI----------SSQASSYFIDAATVDDSGEYRCQTQLSTL 78

Query: 74 SSQQFIQLSGIPNIPV 89
          S    +++     +  
Sbjct: 79 SDPVQLEVHIGWLLLQ 94

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 44.9 bits (106), Expect = 8e-07
 Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 12/79 (15%)

Query: 15  CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
           C+ + N    KV + ++G                     +      D G+Y C+      
Sbjct: 110 CHSWKNTALHKVTYLQNGKGR--------KYFHHNSDFYIPKATLKDSGSYFCRGLVGSK 161

Query: 74  ---SSQQFIQLSGIPNIPV 89
              S    I ++    +  
Sbjct: 162 NVSSETVQITITQGLAVST 180

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 10  RAEIICNVYANPPAKVE--WFRDGTAITLGGRI--------DMHVSSEKHSLLVRHIKDT 59
           +  + C         ++  W    +       +           +     +L +  +  +
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181

Query: 60  DFGNYMCQASNNLGSSQQFIQLS 82
           D G Y C AS+ L + +    + 
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 3/86 (3%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
             I C   +     V               +      K    +     +  G   C+A  
Sbjct: 27  VVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKI 85

Query: 71  NLGS--SQQFIQLSGIPNIPVFQKSS 94
           N  S  S  +I +     I     S 
Sbjct: 86  NDESYQSIMYIVVVVGYRIYDVVLSP 111

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 9   MRAEIICNVYANPPAKVEWFRDG----TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
             AE+ C     P + V+W        +  +   RI +       +L   H+  +D G Y
Sbjct: 368 RMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG---TLNFSHVLLSDTGVY 422

Query: 65  MCQASNNLGSSQQFIQL 81
            C  +N  G+S     L
Sbjct: 423 TCMVTNVAGNSNASAYL 439

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRID---------MHVSSEKHSLLVRHIKDTDF 61
          A + C V  N    ++W                       +  S  + S+ V  +  +D 
Sbjct: 24 AILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE 83

Query: 62 GNYMCQASNNLGSSQQ 77
          G Y C        + +
Sbjct: 84 GQYTCSLFTMPVKTSK 99

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 8/128 (6%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS---LLVRHIKDTDFGN 63
               A   C+      A    +  G  +      ++ V+S +       V +    D G 
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237

Query: 64  YMCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYSAIIQYL 118
           Y C      G   S     +   P +P+       +G     +      ++    I+   
Sbjct: 238 YRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVARE 297

Query: 119 LKFREREG 126
           +++    G
Sbjct: 298 VEYCTASG 305

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 13/106 (12%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 1   MHSITAPD-MRAEIICNVYANPPAKVEWFR--------DGTAITLGGRIDM-HVSSEKHS 50
             +IT  +     + C       + ++W          +   +    +  + H S+ + S
Sbjct: 8   TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67

Query: 51  LLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSGIPNIPVFQKSSR 95
           + V ++   D G Y C   ++ + + +  + +         +  S 
Sbjct: 68  ITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH 113

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 9   MRAEIICNVYANPPAKVEWFR-DGTAIT---LGGRIDMHVSSEKHSLLVRHIKDTDFGNY 64
           M AE+ C   +     V W   +GT +T      RI +       +L   ++   D G Y
Sbjct: 357 MAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG---TLNFTNVTVQDTGMY 412

Query: 65  MCQASNNLGSSQQFIQL--SGIPN 86
            C  SN++G++     L  +G  +
Sbjct: 413 TCMVSNSVGNTTASATLNVTGTHH 436

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 10  RAEIICNVYANPPAKVE--WFRDGTAITLGGRI--------DMHVSSEKHSLLVRHIKDT 59
           +  + C         ++  W    +       +           +     +L +  +  +
Sbjct: 25  KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 84

Query: 60  DFGNYMCQASNNLGSSQQFIQLS 82
           D G Y C AS+ L + +    + 
Sbjct: 85  DQGLYTCAASSGLMTKKNSTFVR 107

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 10/104 (9%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAITLG------GRIDM---HVSSEKHSLLVRHIKDTDF 61
             + C+       ++E  R               R  +    +   K    +  ++  D 
Sbjct: 20  VSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDS 79

Query: 62  GNYMCQASNNLGSSQQFIQLSGIPNIP-VFQKSSRRLGPDGYRL 104
           G Y C          +++ +    +   +  +     G    +L
Sbjct: 80  GQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            + C+          W R      L G++    ++   +L +  +   +  +Y+C A+ 
Sbjct: 19 VSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTT--STLTMNPVSFGNEHSYLCTATC 75

Query: 71 NLGSSQQFIQL 81
               ++ IQ+
Sbjct: 76 ESRKLEKGIQV 86

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 7/74 (9%)

Query: 10  RAEIICNVYANPPA---KVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFG- 62
              + C+V    P    +++  +    +         D      K   +       D G 
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167

Query: 63  NYMCQASNNLGSSQ 76
             +C+A  ++    
Sbjct: 168 VLVCRAKLHIDEMD 181

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 11/73 (15%)

Query: 3   SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
            I      A + C V      +++ ++    +    +  M                    
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------A 153

Query: 63  NYMCQASNNLGSS 75
            + C+A N +   
Sbjct: 154 PFKCKAVNRVSQE 166

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 25  VEWFRDGTAI-TLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSS-- 75
           V W R  T +     ++   + S          L ++++   D G Y     +  G+   
Sbjct: 30  VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89

Query: 76  QQFIQLSGIPNIP 88
            + + L  +  + 
Sbjct: 90  NKALDLRILEMVS 102

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 3   SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH------------ 49
           S+     +    CN    NP  K+ W+R+G  + +   ++                    
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188

Query: 50  -SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 90
            +L +R  KD    ++ C A  +L   +     S   ++ + 
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 12/84 (14%)

Query: 11  AEIICNVYANPPAK---VEWFRD---GTAITLGGRIDMHVSSEKHS------LLVRHIKD 58
           A ++  V          ++WF+          G R     S    S      L +  +  
Sbjct: 30  AVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL 89

Query: 59  TDFGNYMCQASNNLGSSQQFIQLS 82
            D G Y  +             + 
Sbjct: 90  GDRGYYRLEVKAKDTCDSCGFNID 113

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 15  CNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASNN 71
           C   +     V     G  A    GRI ++   +    S+++  ++  D G Y+C A ++
Sbjct: 253 CRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD 312

Query: 72  LGSSQQFIQLSGIPNIPVFQKSSR 95
               +     +    +       R
Sbjct: 313 GQLQEGSPIQAWQLFVNEESTIPR 336

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 12  EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD---TDFGNYMCQA 68
           + +       P  V            GRI + +      L    I     +D G Y+CQA
Sbjct: 145 KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204

Query: 69  SNNLGSSQQFIQ 80
            ++  S+++   
Sbjct: 205 GDDSNSNKKNAD 216

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 16  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
           N+ +     +  FR+   +T        +S    S+ ++ +K++D G Y C        S
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTG------DISRNDGSIKLQTVKESDQGIYTCSIYVGKLES 227

Query: 76  QQFIQLSGIPNIPVF 90
           ++ I L  + +    
Sbjct: 228 RKTIVLHVVQDEFQR 242

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 25/107 (23%)

Query: 11  AEIICNVYA---NPPAKVEWFRDGTAITLGGRIDMHVSSEKH------------------ 49
             + C V         +V+W            +  + S+                     
Sbjct: 23  VLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHN 82

Query: 50  --SLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNIPVFQK 92
             SLL++ ++  D G Y C+      S      ++L  +P  P   +
Sbjct: 83  DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR 129

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 12/76 (15%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDT 59
           A    ++         WF +G  +              R  +     +H L++  +K  
Sbjct: 25 DAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82

Query: 60 DFGNYMCQASNNLGSS 75
          D G  +  +   +  S
Sbjct: 83 DSGALVGFSCPGVQDS 98

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 1   MHSITAPDMR-AEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDM-HVSSEKHS 50
               T        + C V  +  + ++W                   RI +   +  + S
Sbjct: 45  TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS 104

Query: 51  LLVRHIKDTDFGNYMCQASNNLGSSQ 76
           + + ++   D G Y C        + 
Sbjct: 105 ISISNVALADEGEYTCSIFTMPVRTA 130

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 13  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
           + C +       ++W +DG+ I+        +++ K++  + +      G Y CQ +   
Sbjct: 127 LTCGLTDKT---IKWLKDGSIIS-------PLNATKNTWNLGNNAKDPRGTYQCQGAKET 176

Query: 73  GSSQQ 77
            +  Q
Sbjct: 177 SNPLQ 181

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 11  AEIICNVYANP--PAKVEWFRDGTAI--------TLGGRIDMHVSSEKHSLLVRHIKDTD 60
               C+  ++   P    W  D  A+                 +      L +R+++ T 
Sbjct: 28  VSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS 87

Query: 61  FGNYMCQASNNLGSSQ 76
            G Y C  SN+ GSS 
Sbjct: 88  EGXYQCVISNHFGSSY 103

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 9/115 (7%)

Query: 15  CN-VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
           C  V     A V W     A           +     LL+R ++  D GNY C  +    
Sbjct: 28  CPGVEPEDNATVHWVLRKPAAGSHPS---RWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA 84

Query: 74  SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSAIIQYLLKFREREG 126
            +     L  +P         R+         W           + +L  R+ + 
Sbjct: 85  GTVHL--LVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSL-TTKAVLLVRKFQN 136

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 6/68 (8%), Positives = 19/68 (27%), Gaps = 11/68 (16%)

Query: 15  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
           C V      +++ ++    +    +  M                     + C+A N +  
Sbjct: 122 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APFKCKAVNRVSQ 170

Query: 75  SQQFIQLS 82
             +   ++
Sbjct: 171 ESEMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 25 VEWFRDGTAITLGGRID--MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 79
          +E+F +G            + +     +L + ++   D G+Y  +  +      +  
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKIT 99

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 14/65 (21%)

Query: 15 CNVYANPPAK----VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            V  + P        W +D               +   +L V      + G+Y     +
Sbjct: 24 ATVAGDEPLPSNLTYTWTKDDQPHE----------NNTATLTVADATSENAGSYKVTVQD 73

Query: 71 NLGSS 75
              +
Sbjct: 74 TDTMT 78

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 21  PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 80
             A+V W      +        +    + +LL+ ++ + D G Y C +      ++   Q
Sbjct: 560 NLARVFWKFQNGVLKA--ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEER-VKNKTVFQ 616

Query: 81  LS 82
           + 
Sbjct: 617 VV 618

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 7   PDMRAEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 63
                 + C V    P     V   R      L     +   +E  + ++         N
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGAN 156

Query: 64  YMCQASNNLGS 74
           + C+   +L  
Sbjct: 157 FSCRTELDLRP 167

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 20  NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 71
           +  A   W             +    S    L + ++    +G+Y C+A   
Sbjct: 526 SRHATYSWRHKENVEQ---SCEPGHQSPNCILFIENLTAQQYGHYFCEAQEG 574

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 36.6 bits (83), Expect = 9e-04
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 9/88 (10%)

Query: 19  ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
                 + W  D +           V     +L ++  +  D G Y C     + S    
Sbjct: 30  TPEEDGITWTLDQS---------SEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL 80

Query: 79  IQLSGIPNIPVFQKSSRRLGPDGYRLVW 106
           +       I        +  P     + 
Sbjct: 81  LLHKKEDGIWSTDILKDQKEPKNKTFLR 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.86
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.86
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.83
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.8
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.79
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.78
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.78
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.78
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.78
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.77
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.76
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.76
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.76
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.76
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.75
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.75
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.75
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.75
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.75
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.75
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.74
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.74
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.74
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.74
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.74
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.74
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.74
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.73
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.73
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.73
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.72
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.72
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.72
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.72
1he7_A	126	High affinity nerve growth factor receptor; transf	99.72
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.72
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.71
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.71
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.71
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.71
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.71
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.71
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.71
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.71
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.7
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.7
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.69
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.69
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.69
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.69
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.69
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.69
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.68
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.68
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.68
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.68
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.68
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.68
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.67
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.67
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.67
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.67
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.66
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.66
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.66
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.66
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.66
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.65
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.65
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.65
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.64
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.64
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.64
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.64
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.64
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.64
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.64
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.64
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.64
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.64
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.64
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.64
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.63
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.63
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.63
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.63
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.63
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.62
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.62
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.62
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.61
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.61
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.61
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.61
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.61
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.61
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.61
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.61
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.61
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.61
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.61
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.6
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.6
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.6
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.6
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.6
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.6
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.6
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.6
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.59
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.59
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.59
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.59
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.59
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.59
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.59
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.59
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.58
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.58
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.58
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.58
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.58
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.58
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.58
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.57
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.57
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.57
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.57
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.57
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.57
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.57
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.57
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.57
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.57
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.57
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.56
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.56
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.56
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.56
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.56
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.56
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.55
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.55
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.55
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.55
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.55
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.55
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.55
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.55
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.55
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.55
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.55
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.54
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.54
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.54
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.54
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.54
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.53
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.53
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.53
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.53
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.53
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.53
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.53
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.53
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.53
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.53
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.53
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.53
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.52
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.52
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.52
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.52
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.52
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.52
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.52
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.52
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.52
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.52
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.52
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.52
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.52
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.51
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.51
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.51
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.51
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.51
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.51
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.51
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.51
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.51
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.5
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.5
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.5
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.5
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.5
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.5
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.5
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.5
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.5
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.49
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.49
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.49
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.49
2ens_A	96	Advanced glycosylation END product-specific recept	99.49
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.48
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.48
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.48
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.48
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.48
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.48
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.48
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.48
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.48
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.48
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.48
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.48
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.47
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.47
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.47
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.47
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.46
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.46
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.46
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.46
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.45
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.45
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.45
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.45
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.45
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.45
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.45
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.45
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.45
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.45
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.45
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.44
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.44
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.44
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.44
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.44
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.44
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.44
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.44
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.44
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.44
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.43
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.43
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.43
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.43
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.43
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.43
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.43
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.43
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.42
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.42
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.42
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.41
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.41
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.41
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.41
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.41
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.41
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.4
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.4
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.4
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.4
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.4
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.4
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.4
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.4
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.4
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.4
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.4
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.39
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.39
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.38
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.38
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.38
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.38
3khq_A	133	B-cell antigen receptor complex-associated protei	99.38
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.38
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.37
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.37
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.37
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.37
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.37
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.37
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.37
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.36
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.36
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.36
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.36
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.36
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.35
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.35
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.35
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.35
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.34
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.34
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.34
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.34
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.34
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.33
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.33
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.33
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.33
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.33
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.32
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.32
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.31
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.31
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.31
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.31
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.31
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.3
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.3
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.3
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.3
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.3
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.3
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.29
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.29
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.29
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.28
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.28
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.28
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.28
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.28
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.28
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.27
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.27
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.27
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.27
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.27
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.27
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.26
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.25
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.25
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.25
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.25
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.25
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.25
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.24
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.24
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.24
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.24
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.24
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.24
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.23
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.23
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.23
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.23
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.23
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.22
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.21
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.21
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.21
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.2
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.2
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.19
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.19
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.19
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.19
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.19
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.19
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.19
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.19
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.18
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.18
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.18
1xt5_A	135	Variable region-containing chitin-binding protein	99.18
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.17
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.15
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.15
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.15
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.15
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.15
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.15
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.14
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.14
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.14
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.14
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.14
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.14
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.14
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.13
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.13
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.13
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	99.12
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.12
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.12
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.12
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.12
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.12
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.11
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.11
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.1
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.1
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.1
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.09
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.09
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.09
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.09
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.09
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.08
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.07
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	99.07
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.07
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.06
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.06
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.06
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.05
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	99.05
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.05
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	99.05
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.05
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.04
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.04
3kg5_A	134	B-cell antigen receptor complex-associated protei	99.04
2otu_A	115	FV light chain variable domain; antibody FV polygl	99.04
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.61
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	99.04
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	99.04
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	99.03
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.03
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.03
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.03
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.03
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.02
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.02
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	99.02
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.02
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.01
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.01
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.01
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	99.01
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.0
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.0
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.0
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.0
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.0
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.99
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	98.99
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.99
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.99
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.99
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.98
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.98
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.98
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.97
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	98.52
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.97
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.97
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.97
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.97
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.97
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.96
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.96
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.95
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	98.95
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.94
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.94
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.94
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.93
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.93
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.93
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.93
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	98.92
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	98.92
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.92
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.92
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.92
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.92
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.91
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.91
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.9
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.9
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.9
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.89
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.88
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.88
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.88
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.88
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.87
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.87
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.87

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.86  E-value=1.1e-20  Score=99.43  Aligned_cols=84  Identities=25%  Similarity=0.464  Sum_probs=75.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+..++....|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        22 ~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  101 (107)
T 3knb_B           22 PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV  101 (107)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            46788999999999999999999999999999988888877777777899999999999999999999999998888888


Q ss_pred             EecC
Q psy12132         82 SGIP   85 (126)
Q Consensus        82 ~~~~   85 (126)
                      .|..
T Consensus       102 ~V~~  105 (107)
T 3knb_B          102 TVLE  105 (107)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7753

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.7e-19  Score=105.31  Aligned_cols=120  Identities=24%  Similarity=0.408  Sum_probs=95.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +.+..|+++.|.|.+.+.|.|.+.|++++..+...  .++.+........|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        28 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  107 (215)
T 3mtr_A           28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI  107 (215)
T ss_dssp             EEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEE
Confidence            56788999999999999999999999999887654  4566655555679999999999999999999999998888888


Q ss_pred             EEecC--CCCeeccCcceeCCCeeEEEEEE---ccCCcceeEEEEEEEe
Q psy12132         81 LSGIP--NIPVFQKSSRRLGPDGYRLVWQV---DTYSAIIQYLLKFRER  124 (126)
Q Consensus        81 l~~~~--~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~  124 (126)
                      +.+..  .+|.....  ......+.|+|..   .+..++..|.+.|++.
T Consensus       108 l~v~~~P~~p~~~~~--~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~  154 (215)
T 3mtr_A          108 LVQADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAV  154 (215)
T ss_dssp             EEECCCCCCCEEEEE--EEETTEEEEEEECCSCCCSSCEEEEEEEEEET
T ss_pred             EEECCCCCCCcceEE--EEecceEEEEEecCCccCCCceEEEEEEEEEC
Confidence            77643  33332222  3456678999985   3557888999999875

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.83  E-value=5e-19  Score=92.05  Aligned_cols=83  Identities=18%  Similarity=0.342  Sum_probs=72.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+...  .++.+...+....|.|.++...|.|.|+|.+.|..|...+.+
T Consensus        14 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   93 (100)
T 3knb_A           14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV   93 (100)
T ss_dssp             EEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEE
Confidence            466788999999999999999999999999988644  356666666677999999999999999999999999988888


Q ss_pred             EEEec
Q psy12132         80 QLSGI   84 (126)
Q Consensus        80 ~l~~~   84 (126)
                      .|.|.
T Consensus        94 ~l~V~   98 (100)
T 3knb_A           94 NIHIR   98 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.80  E-value=3.7e-18  Score=90.64  Aligned_cols=84  Identities=18%  Similarity=0.281  Sum_probs=72.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        16 ~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   95 (114)
T 2cqv_A           16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   95 (114)
T ss_dssp             SEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             CeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEE
Confidence            45678899999999999999999999999988877677776655556789999999999999999999999988887777


Q ss_pred             EecC
Q psy12132         82 SGIP   85 (126)
Q Consensus        82 ~~~~   85 (126)
                      .+..
T Consensus        96 ~V~~   99 (114)
T 2cqv_A           96 TVVD   99 (114)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7653

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.79  E-value=8e-18  Score=87.76  Aligned_cols=83  Identities=20%  Similarity=0.357  Sum_probs=73.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|.......|
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   96 (103)
T 3qp3_A           17 SHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL   96 (103)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence            45678899999999999999999999999999887777777766667789999999999999999999999988888877


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus        97 ~V~   99 (103)
T 3qp3_A           97 DVT   99 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.8e-17  Score=88.47  Aligned_cols=84  Identities=15%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      .+.+.+|+++.|.|.+.+.|.|.+.|++++..+. ..++.+........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus        33 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l  111 (118)
T 2e7c_A           33 TYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI  111 (118)
T ss_dssp             CEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEE
T ss_pred             CEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEE
Confidence            3567789999999999999999999999998876 345555555555689999999999999999999999988888888


Q ss_pred             EecCC
Q psy12132         82 SGIPN   86 (126)
Q Consensus        82 ~~~~~   86 (126)
                      .+...
T Consensus       112 ~V~~~  116 (118)
T 2e7c_A          112 RVVEK  116 (118)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            77543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.78  E-value=2.7e-17  Score=84.91  Aligned_cols=83  Identities=17%  Similarity=0.379  Sum_probs=72.7

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.+. |.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        10 ~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   89 (97)
T 2bk8_A           10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE   89 (97)
T ss_dssp             CEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEE
Confidence            5678899999999999997 899999999999887777777655556678999999999999999999999998888888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.+.
T Consensus        90 l~V~   93 (97)
T 2bk8_A           90 LFVK   93 (97)
T ss_dssp             EEET
T ss_pred             EEEE
Confidence            7764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.78  E-value=2.1e-17  Score=85.51  Aligned_cols=83  Identities=24%  Similarity=0.394  Sum_probs=72.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        15 ~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l   94 (99)
T 3puc_A           15 DTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL   94 (99)
T ss_dssp             CEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            45678899999999999999999999999998887778877776667789999999999999999999999988887777


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus        95 ~V~   97 (99)
T 3puc_A           95 TIK   97 (99)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.77  E-value=6.1e-17  Score=92.87  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=88.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....++.....+....|.|.++...|.|.|+|.+.+..+.....+.+
T Consensus        16 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l   95 (197)
T 3lcy_A           16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL   95 (197)
T ss_dssp             CEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEE
Confidence            45678899999999999999999999999998877777777777767789999999999999999999988877777666


Q ss_pred             EecCCCCeecc-----CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPNIPVFQK-----SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+...+.....     ......++.+.|.|...+.++.
T Consensus        96 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p  133 (197)
T 3lcy_A           96 LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP  133 (197)
T ss_dssp             EEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC
T ss_pred             EEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC
Confidence            65432222211     1123467889999998776543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.76  E-value=1e-17  Score=84.42  Aligned_cols=69  Identities=23%  Similarity=0.591  Sum_probs=61.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++.+.+|+++.|.|.+.+ |.|.+.|+|++..+....++.+...+....|.|.++...|.|.|+|.+.+.
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE
Confidence            578899999999999865 889999999999998888888887777789999999999999999998764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.76  E-value=2.8e-16  Score=94.84  Aligned_cols=112  Identities=22%  Similarity=0.289  Sum_probs=88.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....++..........|.|.++...|.|.|+|.+.+..|.....+.|
T Consensus        14 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l   93 (284)
T 2rik_A           14 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL   93 (284)
T ss_dssp             CEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEE
Confidence            45678899999999999999999999999998877777666555556799999999999999999999998888778888


Q ss_pred             EecCCCCeeccCc---ceeCCCeeEEEEEEccCCc
Q psy12132         82 SGIPNIPVFQKSS---RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+...|.......   ....++.+.|.|...+.+.
T Consensus        94 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~  128 (284)
T 2rik_A           94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE  128 (284)
T ss_dssp             EEECCCEEEECCCSEEEEETTCCEEEEEEEESSSC
T ss_pred             EccCCCcccccCCCceEecCCceEEEEEEEeeeCC
Confidence            7764443332211   2356788999999977644

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.76  E-value=9.4e-17  Score=83.05  Aligned_cols=83  Identities=20%  Similarity=0.305  Sum_probs=69.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.+.|.|.+.|++++..+....++... .......|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~   93 (99)
T 1g1c_A           14 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF   93 (99)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             ceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEE
Confidence            456788999999999999999999999999988766555443 2344568999999999999999999999998888877


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.+.
T Consensus        94 l~V~   97 (99)
T 1g1c_A           94 LLVQ   97 (99)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7764

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.75  E-value=3.8e-16  Score=97.94  Aligned_cols=120  Identities=24%  Similarity=0.361  Sum_probs=93.1

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+....  ++.....+....|.|.++...|.|.|+|.+.|..|.....+.+
T Consensus       111 ~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  190 (389)
T 2jll_A          111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL  190 (389)
T ss_dssp             EECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEE
T ss_pred             EeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEE
Confidence            46789999999999999999999999998876543  5666555666789999999999999999999999988777777


Q ss_pred             EecC--CCCeeccCcceeCCCeeEEEEEE---ccCCcceeEEEEEEEe
Q psy12132         82 SGIP--NIPVFQKSSRRLGPDGYRLVWQV---DTYSAIIQYLLKFRER  124 (126)
Q Consensus        82 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~  124 (126)
                      .+..  .+|.... ........+.|+|..   .+..++..|.+.|++.
T Consensus       191 ~v~~~P~~P~~~~-~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~  237 (389)
T 2jll_A          191 ALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV  237 (389)
T ss_dssp             EECCCCCCCEEEE-EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEET
T ss_pred             EecCCCCCCcceE-EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEEC
Confidence            6532  2332222 223456789999986   3446788999999875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.75  E-value=3.1e-16  Score=95.53  Aligned_cols=121  Identities=21%  Similarity=0.307  Sum_probs=95.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEec-CCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+....++..........|.|.+ +...|.|.|+|.+.|..|.....+.+
T Consensus       114 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  193 (305)
T 2nzi_A          114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL  193 (305)
T ss_dssp             EEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEE
Confidence            45677999999999999999999999999887766677666555667899999 99999999999999999988888777


Q ss_pred             Eec--CCCCeeccCcceeCCCeeEEEEEE---ccCCcceeEEEEEEEe
Q psy12132         82 SGI--PNIPVFQKSSRRLGPDGYRLVWQV---DTYSAIIQYLLKFRER  124 (126)
Q Consensus        82 ~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~  124 (126)
                      .+.  +.+|.... ......+.+.|+|..   .+..++..|.+.|+..
T Consensus       194 ~v~~~P~~p~~~~-~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~  240 (305)
T 2nzi_A          194 DVADVPDPPRGVK-VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT  240 (305)
T ss_dssp             EEEBCCCCCEEEE-EESCCSSCEEEEEECCSCCSBSCEEEEEEEEEET
T ss_pred             EEecCCCCCCCce-eeeccCCEEEEEEcCCccCCCCceeEEEEEEecC
Confidence            764  33333322 223467789999986   3456788999988764

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.75  E-value=1.8e-17  Score=96.29  Aligned_cols=112  Identities=19%  Similarity=0.239  Sum_probs=81.2

Q ss_pred             CceeccCCccEEEEEE---eeecCCCeeEEEECCEEec-----------------cCCcEEEEecCCeEEEEEecCCCCC
Q psy12132          1 MHSITAPDMRAEIICN---VYANPPAKVEWFRDGTAIT-----------------LGGRIDMHVSSEKHSLLVRHIKDTD   60 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~---~~~~p~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d   60 (126)
                      +++.+..|+++.|.|.   +.+.|.+.+.|+|++..+.                 ...++..........|.|.+++..|
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            4678899999999995   4577899999999652110                 1123334444556789999999999


Q ss_pred             CEEEEEEEecCCceeEEEEEEEecCCCCeeccC---cceeCCCeeEEEEEEccCCc
Q psy12132         61 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        61 ~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|+|.+.|..|.....+.|.+.+ ||.+...   .....++.+.|.|.+.|.++
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~-p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~  135 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVTCTVNAFPH  135 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEE-EEEEEEEEEECCSSCSCCEEEEEEEEEESC
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecC-CceeeecceeEEEcCCCEEEEEEEcCCCCC
Confidence            9999999999999888888887753 3333221   22345778999999987654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=2.7e-17  Score=85.48  Aligned_cols=79  Identities=13%  Similarity=0.240  Sum_probs=66.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+  .|.+.+.|+|++..+....++.+...+....|.|.++...|.|.|+|.+.|..  ......|
T Consensus        16 ~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~--~~~~a~L   91 (100)
T 2yuz_A           16 DQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYN--VTLPAKV   91 (100)
T ss_dssp             CEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSSC--CCEEEEE
T ss_pred             ceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCCC--eeEEEEE
Confidence            4678899999999999  78899999999999988888888777777799999999999999999999983  3344444


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus        92 ~V~   94 (100)
T 2yuz_A           92 HVI   94 (100)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.75  E-value=1e-16  Score=82.89  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.+.|.|.+.|++++..+.... ++.....+....|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~   93 (99)
T 1u2h_A           14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEAR   93 (99)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             ceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEE
Confidence            3567889999999999999999999999998876543 444444555568999999999999999999999998888877


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.+.
T Consensus        94 l~V~   97 (99)
T 1u2h_A           94 LEVR   97 (99)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7763

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.74  E-value=3e-16  Score=103.06  Aligned_cols=111  Identities=21%  Similarity=0.369  Sum_probs=90.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.+.|..|...+...|.
T Consensus       394 ~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  473 (570)
T 3b43_A          394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT  473 (570)
T ss_dssp             EEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             eeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            45678999999999999999999999999998877777776666567899999999999999999999999988888887


Q ss_pred             ecCCCCeeccCc---ceeCCCeeEEEEEEccCCcc
Q psy12132         83 GIPNIPVFQKSS---RRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        83 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +.. +|.+...+   ....++.+.|.|...+.+++
T Consensus       474 v~~-~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~  507 (570)
T 3b43_A          474 LKA-PPRFVKKLSDISTVVGEEVQLQATIEGAEPI  507 (570)
T ss_dssp             ECC-CCEEEECCCCBCCBTTCCEEEEEEEESCSSC
T ss_pred             ecc-CCcccccCCCceecCCCeEEEEEEEecCCCC
Confidence            753 44443322   23467889999999877553

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.74  E-value=9e-18  Score=88.14  Aligned_cols=83  Identities=19%  Similarity=0.353  Sum_probs=72.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        23 ~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  102 (106)
T 1nct_A           23 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL  102 (106)
T ss_dssp             CEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEE
T ss_pred             CEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEE
Confidence            46788999999999999999999999999988877777777665556799999999999999999999999988888777


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus       103 ~V~  105 (106)
T 1nct_A          103 TIQ  105 (106)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            763

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=1.1e-16  Score=82.89  Aligned_cols=83  Identities=20%  Similarity=0.354  Sum_probs=68.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.+.|.|.+.|++++..+....+.. .........|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        14 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (100)
T 2kdg_A           14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ   93 (100)
T ss_dssp             CEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEE
Confidence            3567889999999999999999999999998876554322 223334468999999999999999999999998888888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.+.
T Consensus        94 l~V~   97 (100)
T 2kdg_A           94 LDVL   97 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=1.6e-16  Score=84.56  Aligned_cols=85  Identities=21%  Similarity=0.380  Sum_probs=70.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++.+.... ....|.|.++...|.|.|+|.+.|..|.....+
T Consensus        24 ~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  103 (116)
T 2kkq_A           24 SKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNT  103 (116)
T ss_dssp             CEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEE
Confidence            46788999999999999999999999999988764 4566655443 345899999999999999999999999888888


Q ss_pred             EEEecCC
Q psy12132         80 QLSGIPN   86 (126)
Q Consensus        80 ~l~~~~~   86 (126)
                      .|.+...
T Consensus       104 ~l~V~~~  110 (116)
T 2kkq_A          104 RLDVTAR  110 (116)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            8877543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.74  E-value=4.4e-17  Score=83.50  Aligned_cols=80  Identities=16%  Similarity=0.273  Sum_probs=66.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--EEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+..|+.+.|.|.+.|.|.|.+.|++++  ..+......  ........|.|.++...|.|.|+|.+.|..|...+.+
T Consensus        11 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (93)
T 1wit_A           11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV--DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF   88 (93)
T ss_dssp             EEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEE--EEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEE--EecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEE
Confidence            456788999999999999999999999998  776544322  2333456899999999999999999999999888887


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .|.+
T Consensus        89 ~l~V   92 (93)
T 1wit_A           89 EVIV   92 (93)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.73  E-value=3.3e-16  Score=102.83  Aligned_cols=113  Identities=18%  Similarity=0.332  Sum_probs=88.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.+.+.|+|++..+....++.+........|.|.++...|.|.|+|.+.|..|.......+
T Consensus        14 ~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   93 (570)
T 3b43_A           14 HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL   93 (570)
T ss_dssp             CEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEE
Confidence            46678899999999999999999999999988876666666555556789999999999999999999998877766666


Q ss_pred             EecC--CCCeeccCc---ceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIP--NIPVFQKSS---RRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~--~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+..  .+|.+....   ....+..+.|.|...+.++.
T Consensus        94 ~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~  131 (570)
T 3b43_A           94 VIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPL  131 (570)
T ss_dssp             EECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSC
T ss_pred             EECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCC
Confidence            5532  345444322   23457889999999877653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.73  E-value=4e-16  Score=97.85  Aligned_cols=111  Identities=22%  Similarity=0.398  Sum_probs=86.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEEecc-----CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTAITL-----GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      +..+.+|+++.|.|.+.|.|.+.+.|+++  +..+..     ..++.+........|.|.++...|.|.|+|.+.|..|.
T Consensus         9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   88 (389)
T 2jll_A            9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG   88 (389)
T ss_dssp             CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCC
Confidence            35677899999999999999999999999  877754     35666655555679999999999999999999999998


Q ss_pred             eEEEEEEEecCCCCeeccCcc---eeCCCeeEEEEEEccCCc
Q psy12132         75 SQQFIQLSGIPNIPVFQKSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      ....+.|.+.. +|.+.....   ...++.+.|.|...+.++
T Consensus        89 ~~~~~~l~V~~-~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~  129 (389)
T 2jll_A           89 HQKSMYLDIEY-APKFISNQTIYYSWEGNPINISCDVKSNPP  129 (389)
T ss_dssp             EEEEEEEEEEE-EEEECCSCCEEEECTTCCEEEEECEEEESC
T ss_pred             cceEEEEEEEe-CCEEecCcceEEeccCCEEEEEEEEEecCC
Confidence            88887777653 233322222   246788999998877654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.73  E-value=3.6e-16  Score=89.55  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=84.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....  ++..........|.|.++...|.|.|+|.+.+..+......
T Consensus        14 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   93 (194)
T 2a38_A           14 SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTA   93 (194)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEE
Confidence            4567889999999999999999999999988765442  44444445567899999999999999999999888777776


Q ss_pred             EEEecC--CCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         80 QLSGIP--NIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        80 ~l~~~~--~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.+..  .+|.+...   .....++.+.|.|...+.++.
T Consensus        94 ~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  133 (194)
T 2a38_A           94 ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP  133 (194)
T ss_dssp             EEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC
T ss_pred             EEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC
Confidence            666542  33333322   223467789999999776543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.72  E-value=2.2e-15  Score=87.59  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEec-cCCcEEEEec-CCeEEEEEecCCC-CCCEEEEEEEecCCce-eEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAIT-LGGRIDMHVS-SEKHSLLVRHIKD-TDFGNYMCQASNNLGS-SQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~-~~~   77 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+. ...++..... .+...|.|.++.. .|.|.|+|.+.+..|. ...
T Consensus        15 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~   94 (212)
T 2yd1_A           15 NQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSA   94 (212)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEE
T ss_pred             ceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEe
Confidence            4567889999999999999999999999998876 4456655433 3346899999999 9999999999998877 566


Q ss_pred             EEEEEecCCC------CeeccCc---ceeCCCeeEEEEEEccCCcc
Q psy12132         78 FIQLSGIPNI------PVFQKSS---RRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        78 ~~~l~~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.|.+...+      |.+...+   ....++.+.|.|...+.++.
T Consensus        95 ~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  140 (212)
T 2yd1_A           95 DATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP  140 (212)
T ss_dssp             EEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCC
T ss_pred             eEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCC
Confidence            6666654321      3333222   23458889999999776553

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.72  E-value=1.1e-16  Score=82.11  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++.+.+|+++.|.|.+.+ +.+.+.|+|++..+....++.+...+....|.|.++...|.|.|+|.+.|.
T Consensus        14 ~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           14 GVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             ceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            467889999999999975 568899999999998878888777776779999999999999999999884

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.72  E-value=2.3e-15  Score=90.83  Aligned_cols=110  Identities=22%  Similarity=0.316  Sum_probs=87.3

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+....++..........|.|.++...|.|.|+|.+.+..|.....+.|.+
T Consensus       110 ~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  189 (284)
T 2rik_A          110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV  189 (284)
T ss_dssp             EEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEE
Confidence            46789999999999999999999999999887766666655556678999999999999999999999888888888877


Q ss_pred             cCCCCeecc--CcceeCCCeeEEEEEEccCCc
Q psy12132         84 IPNIPVFQK--SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        84 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ...|.....  ......+..+.|.|...+.++
T Consensus       190 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~  221 (284)
T 2rik_A          190 KEPPVFRKKPHPVETLKGADVHLECELQGTPP  221 (284)
T ss_dssp             ECCCBCCSCCCCEEECTTCCEEEEEECBSSSC
T ss_pred             ecCCcceeCCCcceecCCCeEEEEEEEEecCC
Confidence            543322221  122346778999999987765

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.72  E-value=3.2e-15  Score=85.80  Aligned_cols=112  Identities=16%  Similarity=0.260  Sum_probs=80.8

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCC--cEEEEecCC-------eEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGG--RIDMHVSSE-------KHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++.+.+|+++.|.|.+. +.|.+.+.|++++..+....  ++.+.....       ...|.|.++...|.|.|+|.+.+.
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   90 (195)
T 2c5d_C           11 NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLG   90 (195)
T ss_dssp             CEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEET
T ss_pred             heEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeC
Confidence            46788999999999998 99999999999998876542  333322221       458999999999999999999997


Q ss_pred             CceeEE-EEEEEecCCCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         72 LGSSQQ-FIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        72 ~~~~~~-~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.... .+.|.+... |.+...   .....++.+.|.|...+.++.
T Consensus        91 ~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  136 (195)
T 2c5d_C           91 HQTFVSQPGYVGLEGL-PYFLEEPEDRTVAANTPFNLSCQAQGPPEP  136 (195)
T ss_dssp             TEEEECCCEEEEECCS-CEEEECCCCEEECTTCCEEEEEEEECSSCC
T ss_pred             CCceecccEEEEEecC-CeEEcCCCcEEEcCCCEEEEEeECCCCCCC
Confidence            665432 255555433 333322   223467889999999877554

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.72  E-value=3.2e-16  Score=84.14  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEe-c------CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-S------SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~-~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      .+..+.|.|.+.|.|.|+++|+|+|..+....+..... .      .....|.|.++...|.|.|+|.+.|..|...+.+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            45679999999999999999999999988766543321 1      1235799999999999999999999999999988


Q ss_pred             EEEecCC
Q psy12132         80 QLSGIPN   86 (126)
Q Consensus        80 ~l~~~~~   86 (126)
                      .+.+...
T Consensus        94 ~l~v~~~  100 (126)
T 1he7_A           94 MAAFMDN  100 (126)
T ss_dssp             EECCCSC
T ss_pred             EEEEEcC
Confidence            8876533

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.72  E-value=3.1e-17  Score=83.81  Aligned_cols=68  Identities=18%  Similarity=0.382  Sum_probs=59.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +.+.+|+++.|.|.+.+ |.+.+.|+|+|..+....++.+...+....|.|.++...|.|.|+|.+.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            34568999999999864 888999999999988888888887777789999999999999999998775

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.71  E-value=1.9e-15  Score=86.42  Aligned_cols=106  Identities=11%  Similarity=0.152  Sum_probs=79.8

Q ss_pred             eeccC-CccEEEEEEeeecCC--CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAP-DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~-g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +.+.+ |+++.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.++...|.|.|+|.+.+. +.....+
T Consensus        12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~   85 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANA   85 (190)
T ss_dssp             EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEE
T ss_pred             EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEEeC-CcccccE
Confidence            34455 999999999998887  7899999998876543321     3458999999999999999999998 7777777


Q ss_pred             EEEecCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         80 QLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        80 ~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .|.+...|.....  ......++.+.|.|...+.++.
T Consensus        86 ~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  122 (190)
T 2wv3_A           86 TIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP  122 (190)
T ss_dssp             EEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC
T ss_pred             EEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC
Confidence            7777544333222  1224568889999999776553

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.71  E-value=3.7e-15  Score=86.67  Aligned_cols=113  Identities=16%  Similarity=0.232  Sum_probs=83.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEE-EecCCeEEEEEecCC-CCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+........ ...+....|.|.++. ..|.|.|+|.+.+..|.....+
T Consensus        15 ~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~   94 (212)
T 2yd6_A           15 DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST   94 (212)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEE
Confidence            45678999999999999999999999999988765432222 222345689999995 9999999999999988877777


Q ss_pred             EEEecCC------CCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         80 QLSGIPN------IPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        80 ~l~~~~~------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .|.+...      .|.+...   .....++.+.|.|...+.++.
T Consensus        95 ~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  138 (212)
T 2yd6_A           95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP  138 (212)
T ss_dssp             EEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC
T ss_pred             EEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC
Confidence            7776432      1333221   223457889999999877543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=84.31  Aligned_cols=84  Identities=26%  Similarity=0.331  Sum_probs=68.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++.+... .....|.|.++...|.|.|+|.+.|..|.....+
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   96 (110)
T 2dm2_A           17 HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG   96 (110)
T ss_dssp             CEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECC
T ss_pred             CeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence            35678899999999999999999999999887764 455655543 2345899999999999999999999999887777


Q ss_pred             EEEecC
Q psy12132         80 QLSGIP   85 (126)
Q Consensus        80 ~l~~~~   85 (126)
                      .|.+..
T Consensus        97 ~l~V~~  102 (110)
T 2dm2_A           97 RLMVQA  102 (110)
T ss_dssp             CEEEEC
T ss_pred             EEEEEC
Confidence            777643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.71  E-value=6.2e-16  Score=86.12  Aligned_cols=86  Identities=21%  Similarity=0.322  Sum_probs=71.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.+.|.|.+.|++++..+....++.+... .....|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        50 ~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  129 (154)
T 1fhg_A           50 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAE  129 (154)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEE
Confidence            35678899999999999999999999999998877777665532 23468999999999999999999999999888888


Q ss_pred             EEecCCC
Q psy12132         81 LSGIPNI   87 (126)
Q Consensus        81 l~~~~~~   87 (126)
                      |.+...+
T Consensus       130 l~V~~~p  136 (154)
T 1fhg_A          130 LLVETMG  136 (154)
T ss_dssp             EEEECC-
T ss_pred             EEEeCcC
Confidence            8775443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.71  E-value=5.8e-16  Score=80.80  Aligned_cols=81  Identities=22%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             cCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEE--EecC---CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~--~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ..++.+.|.|.+.|.|.|.+.|++++..+....+...  ...+   ....|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            3467899999999999999999999998876654322  1111   1245999999999999999999999999999998


Q ss_pred             EEecCC
Q psy12132         81 LSGIPN   86 (126)
Q Consensus        81 l~~~~~   86 (126)
                      |.+...
T Consensus        94 l~V~~~   99 (103)
T 1wwb_X           94 AHFMGW   99 (103)
T ss_dssp             ECCSCC
T ss_pred             EEECCC
Confidence            887543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=8.1e-17  Score=83.51  Aligned_cols=81  Identities=20%  Similarity=0.402  Sum_probs=66.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEec-cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAIT-LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.+.|.+.+.|++++..+. ...++.....+   .|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        17 ~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   93 (100)
T 2edj_A           17 NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWSAV   93 (100)
T ss_dssp             CEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEEEECSSCCCBCCEE
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEEEEcCCCCEEEEEE
Confidence            3567789999999999999999999999988776 33444443333   7999999999999999999999888877777


Q ss_pred             EEecC
Q psy12132         81 LSGIP   85 (126)
Q Consensus        81 l~~~~   85 (126)
                      |.+..
T Consensus        94 l~V~~   98 (100)
T 2edj_A           94 LDVTE   98 (100)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            77653

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.71  E-value=2.7e-16  Score=90.81  Aligned_cols=112  Identities=10%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             ceeccCCccEEEEEEeeecCC-----CeeEEEE-CCEEeccCCcEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP-----AKVEWFR-DGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-----~~~~w~~-~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.+.+|+++.|.|.+.+.|.     +.+.|++ ++.......+..+....   ....|.|.++...|.|.|+|.+.+..
T Consensus        11 ~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   90 (202)
T 3bp6_B           11 VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA   90 (202)
T ss_dssp             EEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCC
Confidence            467889999999999988876     7899999 44444444455544321   34689999999999999999999988


Q ss_pred             ceeEEEEEEEecCCCCeeccC-cceeCCCeeEEEEEEccCCc
Q psy12132         73 GSSQQFIQLSGIPNIPVFQKS-SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.....+.|.+...+...... .....++.+.|.|...+.+.
T Consensus        91 ~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~  132 (202)
T 3bp6_B           91 AWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL  132 (202)
T ss_dssp             EEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSC
T ss_pred             CcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCC
Confidence            877777777765432211111 12346788999999977543

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.71  E-value=4.5e-16  Score=81.14  Aligned_cols=68  Identities=26%  Similarity=0.504  Sum_probs=58.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ++.+.+|+++.|.|.+.+ |.+.+.|++++..+....  ++.+...+....|.|.++...|.|.|+|.+.|
T Consensus        16 ~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           16 DTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             CEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            456788999999999976 779999999999887666  66777666667899999999999999999988

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.70  E-value=2.1e-15  Score=87.43  Aligned_cols=115  Identities=10%  Similarity=0.100  Sum_probs=80.1

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECC-EEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      .+.+|+++.|.|.+.|.|.|.+.|++.. ..+  ...  ....+....|.|.+++..|.|.|.|.+.|..+.....+.|.
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~   87 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEE
Confidence            3448999999999999999999998842 211  111  12233445799999999999999999999888777777777


Q ss_pred             ecCCCC--eeccCcceeCCCeeEEEEEEccCCcceeEEEEEE
Q psy12132         83 GIPNIP--VFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFR  122 (126)
Q Consensus        83 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r  122 (126)
                      |...|.  .+........++.+.|+|.+.+..|.....+.|.
T Consensus        88 V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~  129 (202)
T 1vca_A           88 IYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLL  129 (202)
T ss_dssp             EEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEE
T ss_pred             EEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEE
Confidence            653332  2222333567889999999977654332334443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.70  E-value=1.6e-15  Score=87.06  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=83.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+... .++.... .+....|.|.++...|.|.|+|.+.+..|.....+
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~   92 (197)
T 2j8h_A           13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA   92 (197)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             ccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEE
Confidence            466789999999999999999999999999887643 3554433 34456899999999999999999999888777777


Q ss_pred             EEEecCCCC----eecc---CcceeCCCeeEEEEEEccCCc
Q psy12132         80 QLSGIPNIP----VFQK---SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        80 ~l~~~~~~~----~~~~---~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.+...+.    ....   ......++.+.|.|...+.++
T Consensus        93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  133 (197)
T 2j8h_A           93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD  133 (197)
T ss_dssp             EEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESC
T ss_pred             EEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCC
Confidence            666532211    1111   122345788999999977654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=4.9e-16  Score=81.07  Aligned_cols=79  Identities=15%  Similarity=0.305  Sum_probs=65.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+.+|+++.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|..+  ...+.+.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~--~~~l~V~   96 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA--FFGVTVQ   96 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC--CEEEEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE--EEEEEEc
Confidence            567889999999999998888 9999999988777777777666677899999999999999999998743  4444444


Q ss_pred             ec
Q psy12132         83 GI   84 (126)
Q Consensus        83 ~~   84 (126)
                      ..
T Consensus        97 ~~   98 (104)
T 2e6p_A           97 DP   98 (104)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.6e-16  Score=82.20  Aligned_cols=79  Identities=19%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+.......   ......|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        20 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   96 (99)
T 2yr3_A           20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV   96 (99)
T ss_dssp             CEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE---ETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCE
T ss_pred             CCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe---eCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence            4567889999999999999999999999987765443221   2234689999999999999999999999887777666


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus        97 ~V   98 (99)
T 2yr3_A           97 TV   98 (99)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.69  E-value=3.8e-15  Score=84.60  Aligned_cols=112  Identities=16%  Similarity=0.258  Sum_probs=81.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCC--eEEEEEecCCCCCCEEEEEEEecCCce-eEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQASNNLGS-SQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~   78 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....+........  ...|.|.++...|.|.|+|.+.+..+. ....
T Consensus        11 ~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   90 (182)
T 1rhf_A           11 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   90 (182)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             ceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEE
Confidence            3567889999999999998999999999998876654444333222  358999999999999999999987654 3345


Q ss_pred             EEEEecCCCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         79 IQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        79 ~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +.|.+.. +|.+...   .....++.+.|.|...+.++.
T Consensus        91 ~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  128 (182)
T 1rhf_A           91 VWLTVEG-VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP  128 (182)
T ss_dssp             EEEEEEC-SCEEEECCCCEEECTTCCEEEEEEEECSSSC
T ss_pred             EEEEEec-CCeEEecCcceEecCCCEEEEEeEecCCCCC
Confidence            5555543 3333221   224567889999999877654

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.69  E-value=2.2e-16  Score=82.85  Aligned_cols=83  Identities=24%  Similarity=0.441  Sum_probs=60.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.+.|.+.+.|++++..+....+......  ...|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        19 ~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   96 (108)
T 3kvq_A           19 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF   96 (108)
T ss_dssp             CEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETT--TTEEEECSCCGGGCEEEEEEEC----CEEEEEEE
T ss_pred             CeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCC--CcEEEEeecCcccCEEEEEEEEeCCCceEEEEEE
Confidence            35677899999999999999999999999887765555544332  3489999999999999999999999988888888


Q ss_pred             EecCC
Q psy12132         82 SGIPN   86 (126)
Q Consensus        82 ~~~~~   86 (126)
                      .+...
T Consensus        97 ~V~~~  101 (108)
T 3kvq_A           97 IIEGA  101 (108)
T ss_dssp             EEEC-
T ss_pred             EEeCC
Confidence            76533

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.69  E-value=4.6e-16  Score=79.99  Aligned_cols=77  Identities=21%  Similarity=0.436  Sum_probs=64.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.| +.+.|++++..+....++.+. .   ..|.|.++...|.|.|+|.+.|..|.....+.+
T Consensus        18 ~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~---~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   92 (95)
T 2ckn_A           18 SLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT-G---EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV   92 (95)
T ss_dssp             CEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC-S---SEEEESSCCGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe-C---CEEEECCCChHHCEEEEEEeccCCCcEEEEEEE
Confidence            45678899999999999887 899999999887766665543 2   389999999999999999999999888777776


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus        93 ~V   94 (95)
T 2ckn_A           93 NV   94 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=4.7e-16  Score=80.56  Aligned_cols=80  Identities=19%  Similarity=0.409  Sum_probs=66.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+.+|+++.|.|.+.+.| |.+.|++++..+....++.+. .   ..|.|.++...|.|.|+|.+.|..|.....+.+.
T Consensus        13 ~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   87 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT-G---EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN   87 (99)
T ss_dssp             CCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC-S---SEEEETTCCTTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred             eEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE-C---CEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence            5678899999999999876 799999999877655555543 2   3899999999999999999999999888888887


Q ss_pred             ecCCC
Q psy12132         83 GIPNI   87 (126)
Q Consensus        83 ~~~~~   87 (126)
                      +...+
T Consensus        88 V~~~~   92 (99)
T 2cr3_A           88 VSDAL   92 (99)
T ss_dssp             BCSCC
T ss_pred             EecCC
Confidence            76544

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=3.5e-16  Score=84.01  Aligned_cols=84  Identities=15%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             ceeccCCccEEEEEEeeec---CCCeeEEEECCEE-ec--cCCcEEEEecC------CeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYAN---PPAKVEWFRDGTA-IT--LGGRIDMHVSS------EKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~---p~~~~~w~~~~~~-~~--~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+.+|+++.|.|.+.+.   |.|.+.|+|+... +.  ...++.+....      ....|.|.++...|.|.|+|.+.
T Consensus        16 ~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevs   95 (126)
T 2dav_A           16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   95 (126)
T ss_dssp             CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEE
Confidence            4678899999999999764   7899999997421 11  12444442110      14689999999999999999999


Q ss_pred             cCCceeEEEEEEEecC
Q psy12132         70 NNLGSSQQFIQLSGIP   85 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~~   85 (126)
                      |..+...+.+.|.|..
T Consensus        96 n~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           96 YKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CSSCEEEECCEEEEEC
T ss_pred             eCCCcEEEEEEEEEEe
Confidence            9998888888888765

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.68  E-value=8.5e-15  Score=85.20  Aligned_cols=110  Identities=17%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      ++.+.+|+.+.|.|.+. +.|.|.+.|++++..+..+.++.+..+.  +...|.|.++...|.|.|+|.+.|........
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~   90 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST   90 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEE
Confidence            35678899999999986 4699999999999998777666555443  45689999999999999999999943333332


Q ss_pred             EEEEe------------------cCCCCeeccC--cceeCCCeeEEEEEEccC
Q psy12132         79 IQLSG------------------IPNIPVFQKS--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        79 ~~l~~------------------~~~~~~~~~~--~~~~~~~~~~l~~~~~~~  111 (126)
                      +.+..                  ...+|.+...  .....+..+.|.|.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~  143 (207)
T 3rbs_A           91 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANI  143 (207)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESC
T ss_pred             EEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCC
Confidence            22110                  0024443322  234568889999999777

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.68  E-value=2.8e-15  Score=86.90  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=78.9

Q ss_pred             CCccEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEecC
Q psy12132          7 PDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP   85 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~   85 (126)
                      .++.+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.+..+.....+.+.+..
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~   95 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA   95 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHH
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEee
Confidence            34455666666553 57899999999998877777776666667899999999999999999999888777777775431


Q ss_pred             --------------------CCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         86 --------------------NIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        86 --------------------~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                                          .++.....   .....++.+.|.|...+.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  147 (212)
T 2r15_A           96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP  147 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCC
T ss_pred             ccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCc
Confidence                                22222221   223567889999999876553

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=4.3e-16  Score=83.07  Aligned_cols=82  Identities=23%  Similarity=0.305  Sum_probs=68.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.+.|.+.+.|++++..+.. ..++....++   .|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (118)
T 2eo9_A           17 NQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIASTPSGEATWSAY   93 (118)
T ss_dssp             CEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEECSSCEEEEECC
T ss_pred             CEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEEcCCCcEEEEEE
Confidence            35678899999999999999999999999887753 4566555555   8999999999999999999999998887777


Q ss_pred             EEecCC
Q psy12132         81 LSGIPN   86 (126)
Q Consensus        81 l~~~~~   86 (126)
                      |.+...
T Consensus        94 l~V~~~   99 (118)
T 2eo9_A           94 IEVQEF   99 (118)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            776533

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.68  E-value=9e-15  Score=83.56  Aligned_cols=113  Identities=13%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEE-CCEEec-cCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCC-ceeE
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFR-DGTAIT-LGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNL-GSSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~-~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~   76 (126)
                      ++.+.+|+++.|.|.+.+.+ .+.+.|++ ++..+. ...++..... .....|.|.++...|.|.|+|.+.+.. +...
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   90 (191)
T 1epf_A           11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (191)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceE
Confidence            45678899999999998876 78999999 887765 3455554332 445689999999999999999999887 4556


Q ss_pred             EEEEEEecCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         77 QFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      ..+.+.+...+.....  ......++.+.|.|...+.++.
T Consensus        91 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  130 (191)
T 1epf_A           91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP  130 (191)
T ss_dssp             EEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCC
T ss_pred             EEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCC
Confidence            6677766533332222  1223467889999999876553

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=6.3e-16  Score=80.52  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=64.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+ |.+.+.|++++..+....++.+..++....|.|.++...|.|.|+|.+.|.    ...+.|
T Consensus        17 ~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l   91 (103)
T 2edf_A           17 DQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASL   91 (103)
T ss_dssp             CEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSSC----EEEEEE
T ss_pred             ccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEccC----CcEEEE
Confidence            467789999999999986 788999999998887777887777776778999999999999999999992    344444


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus        92 ~V~   94 (103)
T 2edf_A           92 HVE   94 (103)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.67  E-value=6.7e-15  Score=86.36  Aligned_cols=120  Identities=13%  Similarity=0.260  Sum_probs=81.8

Q ss_pred             ceeccCCccEEEEEEeeecCCC---eeEEEECCEE-----------ecc------CCcEEEEec---CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPA---KVEWFRDGTA-----------ITL------GGRIDMHVS---SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~-----------~~~------~~~~~~~~~---~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+.+   .+.|++++..           +..      ..+......   .+...|.|.+++.
T Consensus        13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   92 (226)
T 4f80_A           13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA   92 (226)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence            4678899999999999866554   6899986521           110      112222221   1356899999999


Q ss_pred             CCCEEEEEEEecCCceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         59 TDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .|.|.|+|.+.|..+.....+.+.+.+.............+..+.+.|.+.+..|..  .+.|.+
T Consensus        93 ~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p--~i~W~k  155 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQP--QIQWSN  155 (226)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCC--EEEEEC
T ss_pred             HHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCC--EEEEEE
Confidence            999999999999988888777776654444333334445678899999987753333  345544

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.67  E-value=2.1e-15  Score=77.50  Aligned_cols=66  Identities=24%  Similarity=0.392  Sum_probs=58.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      ++.+.+|+++.|.|.+ +.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+
T Consensus        17 ~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           17 SVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             cEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            4567889999999999 78889999999998887777777777766778999999999999999999

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.67  E-value=3.6e-16  Score=80.99  Aligned_cols=79  Identities=22%  Similarity=0.431  Sum_probs=64.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc---EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +.+.+|+++.|.|.+.+.|.|.+.|++++..+....+   +....  ....|.|.++...|.|.|+|.+.|..|...+.+
T Consensus        18 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN--QHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec--CeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            4577899999999999999999999999988764322   22222  224799999999999999999999999888777


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .|.+
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.67  E-value=1.1e-14  Score=88.63  Aligned_cols=112  Identities=18%  Similarity=0.251  Sum_probs=83.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+... .++.... .+....|.|.++...|.|.|+|.+.|..|.....+
T Consensus        13 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   92 (305)
T 2nzi_A           13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA   92 (305)
T ss_dssp             CEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             ceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceE
Confidence            467889999999999999999999999999887643 3444432 34456899999999999999999999988877777


Q ss_pred             EEEecCCCCe----ec---cCcceeCCCeeEEEEEEccCCc
Q psy12132         80 QLSGIPNIPV----FQ---KSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        80 ~l~~~~~~~~----~~---~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.+...+..    ..   .......++.+.|.|...+.+.
T Consensus        93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  133 (305)
T 2nzi_A           93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD  133 (305)
T ss_dssp             EEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESC
T ss_pred             EEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCC
Confidence            7776422211    11   1122346788999999877654

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.66  E-value=1.5e-15  Score=79.70  Aligned_cols=88  Identities=19%  Similarity=0.337  Sum_probs=67.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.  |.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.+    ......|
T Consensus        17 ~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l   90 (108)
T 2dm7_A           17 TKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ----ERTSATL   90 (108)
T ss_dssp             CCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT----EEEEEEC
T ss_pred             cEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC----CEEEEEE
Confidence            3567889999999999754  789999999888777777777777677899999999999999999955    3445555


Q ss_pred             EecCCCCeeccCcc
Q psy12132         82 SGIPNIPVFQKSSR   95 (126)
Q Consensus        82 ~~~~~~~~~~~~~~   95 (126)
                      .+...++.+...+.
T Consensus        91 ~V~~~p~~~~~~~~  104 (108)
T 2dm7_A           91 TVRALPARFTEGSG  104 (108)
T ss_dssp             EEECCCSSCCCCCC
T ss_pred             EEecCCHHHccCcc
Confidence            55555555554443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.66  E-value=4.8e-15  Score=77.86  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             ceeccCCccEEEEEEeeecCC---CeeEEEECCEEecc---CCcEEEEec------CCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANPP---AKVEWFRDGTAITL---GGRIDMHVS------SEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~---~~~~w~~~~~~~~~---~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+..|+++.|.|.+.+.|.   |.+.|+|++.....   ..++.+...      .....|.|.+++..|.|.|+|.+.
T Consensus        13 ~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (108)
T 3cx2_A           13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVS   92 (108)
T ss_dssp             CEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEe
Confidence            466889999999999999988   99999997732211   234433210      113589999999999999999999


Q ss_pred             cCCceeEEEEEEEec
Q psy12132         70 NNLGSSQQFIQLSGI   84 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~   84 (126)
                      |..|...+.+.|.|.
T Consensus        93 N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           93 TKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CSSCEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEe
Confidence            999999888888764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.66  E-value=4.9e-15  Score=78.36  Aligned_cols=81  Identities=20%  Similarity=0.375  Sum_probs=65.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.  |.+.|++++..+....++.+..++....|.|.++...|.|.|+|.+    +.......|
T Consensus        28 ~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l  101 (113)
T 2edh_A           28 NEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAML  101 (113)
T ss_dssp             CCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEE
T ss_pred             ceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEE
Confidence            3567889999999999754  7899999998887777888777777778999999999999999999    445566666


Q ss_pred             EecCCCC
Q psy12132         82 SGIPNIP   88 (126)
Q Consensus        82 ~~~~~~~   88 (126)
                      .+...|.
T Consensus       102 ~V~~~p~  108 (113)
T 2edh_A          102 TVRAMPS  108 (113)
T ss_dssp             EECCCCC
T ss_pred             EEeCCCC
Confidence            6654443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2e-16  Score=83.33  Aligned_cols=84  Identities=21%  Similarity=0.361  Sum_probs=68.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+......... .......|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        18 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   97 (110)
T 2dm3_A           18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLE   97 (110)
T ss_dssp             EEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCE
T ss_pred             cEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEE
Confidence            356788999999999999999999999998877655443332 2233468999999999999999999999998887777


Q ss_pred             EEecC
Q psy12132         81 LSGIP   85 (126)
Q Consensus        81 l~~~~   85 (126)
                      |.+..
T Consensus        98 l~V~~  102 (110)
T 2dm3_A           98 LVVAA  102 (110)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77653

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.66  E-value=3.6e-15  Score=77.27  Aligned_cols=77  Identities=17%  Similarity=0.284  Sum_probs=64.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+++.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+    |.......|.
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~   92 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF   92 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEE
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEE
Confidence            4567899999999998 7889999999998887777887777766678999999999999999999    4455566666


Q ss_pred             ec
Q psy12132         83 GI   84 (126)
Q Consensus        83 ~~   84 (126)
                      +.
T Consensus        93 V~   94 (100)
T 2yuv_A           93 VR   94 (100)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.65  E-value=5.6e-15  Score=87.23  Aligned_cols=112  Identities=20%  Similarity=0.366  Sum_probs=81.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE-EEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.+.|.+.+.|++++..+....+. ..........|.|.++...|.|.|+|.+.+..+.....+.+
T Consensus        25 ~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l  104 (241)
T 3grw_A           25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL  104 (241)
T ss_dssp             EEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEE
Confidence            56778999999999999999999999999887543221 01111223489999999999999999999988877777777


Q ss_pred             EecCC---CCeecc----CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPN---IPVFQK----SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~---~~~~~~----~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+...   ++....    ......++.+.|.|...+.++.
T Consensus       105 ~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p  144 (241)
T 3grw_A          105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP  144 (241)
T ss_dssp             EEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC
T ss_pred             EEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC
Confidence            76432   222221    1223457789999999777553

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1e-14  Score=77.11  Aligned_cols=78  Identities=17%  Similarity=0.363  Sum_probs=63.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+++.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|    ....+.|.
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~   97 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVT   97 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEE
Confidence            4567899999999995 788999999999988777777776666667999999999999999999988    33444555


Q ss_pred             ecC
Q psy12132         83 GIP   85 (126)
Q Consensus        83 ~~~   85 (126)
                      +..
T Consensus        98 V~~  100 (113)
T 2cpc_A           98 VTE  100 (113)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            443

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.65  E-value=1.3e-15  Score=79.27  Aligned_cols=65  Identities=18%  Similarity=0.384  Sum_probs=57.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.+.+|+++.|.|.+.+.|.+ +.|++++..+....++.+..++....|.|.++...|.|.|+|.
T Consensus        17 ~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A           17 DLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE
T ss_pred             cEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE
Confidence            4667889999999999998888 9999999888777788887777777899999999999999998

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.64  E-value=3.8e-15  Score=87.25  Aligned_cols=112  Identities=21%  Similarity=0.371  Sum_probs=81.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEE-EecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.+.|.+.+.|++++..+....++.. ........|.|.++...|.|.|+|.+.+..+.....+.+
T Consensus        29 ~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l  108 (231)
T 3ojm_B           29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL  108 (231)
T ss_dssp             EEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEE
Confidence            4577899999999999999999999999988764432210 111223479999999999999999999988877777777


Q ss_pred             EecCC---CCeecc----CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPN---IPVFQK----SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~---~~~~~~----~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+...   ++....    ......++.+.|.|...+.++.
T Consensus       109 ~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p  148 (231)
T 3ojm_B          109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP  148 (231)
T ss_dssp             EEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC
T ss_pred             EEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC
Confidence            66432   222221    1223567889999998776543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=7.8e-15  Score=78.18  Aligned_cols=79  Identities=24%  Similarity=0.344  Sum_probs=63.7

Q ss_pred             ccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecC----CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132          9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus         9 ~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      ....|.|.+.|.|.|.+.|++++..+....+.......    ....|.|.++...|.|.|+|.+.|..|...+.+.+.+.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence            45788999999999999999999988766544432211    24589999999999999999999999999998888765


Q ss_pred             CCC
Q psy12132         85 PNI   87 (126)
Q Consensus        85 ~~~   87 (126)
                      ..|
T Consensus       101 ~~P  103 (118)
T 1wwc_A          101 KEP  103 (118)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            433

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=79.56  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             ceeccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ++.+.+|+++.|.|.+.+.|. +.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.+
T Consensus        17 ~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             CcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            467889999999999987774 479999999888877788777777777999999999999999998865

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=5e-16  Score=82.52  Aligned_cols=85  Identities=20%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+....++.+. ..+....|.|.++...|.|.|+|.+    |.......
T Consensus        22 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~   97 (115)
T 2cr6_A           22 DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAA   97 (115)
T ss_dssp             EEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEE
T ss_pred             cEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEE
Confidence            456788999999999999999999999999888766655544 2344568999999999999999994    33444555


Q ss_pred             EEecCCCCee
Q psy12132         81 LSGIPNIPVF   90 (126)
Q Consensus        81 l~~~~~~~~~   90 (126)
                      |.+...|..+
T Consensus        98 L~V~~~p~~~  107 (115)
T 2cr6_A           98 LRVTEKPSVF  107 (115)
T ss_dssp             EEEECCSSCC
T ss_pred             EEEECCCcee
Confidence            6655444443

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=8.3e-16  Score=80.52  Aligned_cols=80  Identities=16%  Similarity=0.302  Sum_probs=65.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|......+.+.+
T Consensus        17 ~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~l~V   95 (106)
T 2dlt_A           17 DLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNF   95 (106)
T ss_dssp             CEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCCCCCBCEEE
T ss_pred             CeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCceEEEEEEE
Confidence            4678899999999999988777 999999988877777777766666789999999999999999999974444444443


Q ss_pred             E
Q psy12132         82 S   82 (126)
Q Consensus        82 ~   82 (126)
                      .
T Consensus        96 ~   96 (106)
T 2dlt_A           96 L   96 (106)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.2e-14  Score=88.66  Aligned_cols=111  Identities=16%  Similarity=0.276  Sum_probs=76.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE--ecCCeEEEEEecCCC-CCCEEEEEEEecCCceeEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSSEKHSLLVRHIKD-TDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~   78 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+... ++...  ..+....|.|.++.. .|.|.|+|.+.+..|.....
T Consensus        15 ~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~   93 (304)
T 2yd9_A           15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH   93 (304)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCE
T ss_pred             ceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEE
Confidence            456789999999999999999999999998876533 33332  233346899999998 99999999999998887777


Q ss_pred             EEEEecCCC------CeeccC---cceeCCCeeEEEEEEccCCc
Q psy12132         79 IQLSGIPNI------PVFQKS---SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        79 ~~l~~~~~~------~~~~~~---~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.|.+...+      |.+...   .....++.+.|.|...+.++
T Consensus        94 ~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~  137 (304)
T 2yd9_A           94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD  137 (304)
T ss_dssp             EEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSC
T ss_pred             EEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCC
Confidence            777664321      333222   12346788999999977654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.64  E-value=1.3e-14  Score=92.51  Aligned_cols=111  Identities=11%  Similarity=0.070  Sum_probs=76.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+.....+.. .......|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        57 ~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l  135 (423)
T 3qs7_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV  135 (423)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred             cEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEE
Confidence            46788999999999999999999999998876654322211 11123469999999999999999999999988888888


Q ss_pred             EecCCCCeeccC-cceeCCCeeEEEEEEccCCc
Q psy12132         82 SGIPNIPVFQKS-SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+...+...... .....++.+.|.|.+.|.++
T Consensus       136 ~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~  168 (423)
T 3qs7_E          136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPE  168 (423)
T ss_dssp             EEC-----CEEEEEEEECSSSSCEEEEEEESSC
T ss_pred             EEecCccccccCCcEeccCCceEEEEEEeeecC
Confidence            776332221111 11234566789999988754

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.64  E-value=3.6e-15  Score=76.58  Aligned_cols=79  Identities=20%  Similarity=0.358  Sum_probs=65.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+  .|.+.|++++..+....++... .+   .|.|.++...|.|.|+|.+.|..|.....+.+
T Consensus        10 ~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~-~~---~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   83 (95)
T 4hwu_A           10 AYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI-GE---YLQIKGATPRDSGLYACTAARTVDSETWIFMV   83 (95)
T ss_dssp             EEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE-TT---EEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe-CC---EEEECcCCcccCEEEEEEEccCCCcEEEEEEE
Confidence            356789999999999985  5799999999988766666543 22   79999999999999999999999988888888


Q ss_pred             EecCC
Q psy12132         82 SGIPN   86 (126)
Q Consensus        82 ~~~~~   86 (126)
                      .+...
T Consensus        84 ~V~~~   88 (95)
T 4hwu_A           84 NVTDA   88 (95)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            87543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.64  E-value=1.3e-14  Score=84.08  Aligned_cols=82  Identities=18%  Similarity=0.405  Sum_probs=71.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+....++.+... +....|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus       127 ~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  206 (212)
T 2r15_A          127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV  206 (212)
T ss_dssp             EEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEE
Confidence            4677899999999999999999999999998887777666554 456789999999999999999999999988888877


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       207 ~V~  209 (212)
T 2r15_A          207 SVF  209 (212)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.64  E-value=1e-14  Score=83.37  Aligned_cols=111  Identities=18%  Similarity=0.232  Sum_probs=78.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-eEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++....++  ..|.|.++...|.|.|+|.+.+..|. .....
T Consensus        16 ~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   93 (192)
T 2iep_A           16 TVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCG   93 (192)
T ss_dssp             EEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG--TEEEESSCCGGGCEEEEEEEECSSSCCEEEEE
T ss_pred             ceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc--cEEEEcCCCcccCeEEEEEEEcCCCceeEeEE
Confidence            35678899999999999999999999999987754 3455554433  37999999999999999999987765 33334


Q ss_pred             EEEecCCCCeec--cCcceeCCCeeEEEEEEccCCcc
Q psy12132         80 QLSGIPNIPVFQ--KSSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        80 ~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.+...+....  .......++.+.|.|...+.++.
T Consensus        94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  130 (192)
T 2iep_A           94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKP  130 (192)
T ss_dssp             EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCC
T ss_pred             EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCc
Confidence            444322221111  12234567789999998766543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.64  E-value=3.4e-15  Score=86.86  Aligned_cols=78  Identities=17%  Similarity=0.347  Sum_probs=65.4

Q ss_pred             eccCCccEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      .+.+|+++.|.|.+.+. |.|.+.|+|++..+....++.  ...+...|.|.++...|.|.|+|.+.|..|...+.+.|.
T Consensus       127 ~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  204 (207)
T 3rbs_A          127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV  204 (207)
T ss_dssp             EEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEe
Confidence            46789999999999998 899999999999887654432  222345799999999999999999999999999888876


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      +
T Consensus       205 ~  205 (207)
T 3rbs_A          205 D  205 (207)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.63  E-value=1.2e-14  Score=83.22  Aligned_cols=81  Identities=21%  Similarity=0.309  Sum_probs=71.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.....+....|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       113 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  192 (194)
T 2a38_A          113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL  192 (194)
T ss_dssp             EEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEE
Confidence            45778999999999999999999999999988877777777766667899999999999999999999999888877776


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      |
T Consensus       193 V  193 (194)
T 2a38_A          193 V  193 (194)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.63  E-value=5.4e-15  Score=92.94  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|+++ +..+....+  ..  .....|.|.++...|.|.|+|.+.|..|.......|
T Consensus       215 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  290 (384)
T 3kld_A          215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR--RH--KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL  290 (384)
T ss_dssp             EEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE--EC--TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce--ec--CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            3467799999999999999999999995 444432221  11  123479999999999999999999999988777777


Q ss_pred             EecCCCCeecc--CcceeCCCeeEEEEEEccCCc
Q psy12132         82 SGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+...|.....  ......++.+.|.|...|.++
T Consensus       291 ~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~  324 (384)
T 3kld_A          291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPK  324 (384)
T ss_dssp             EEEEEEEEEECCCCEEECTTCCEEEECEEEEESC
T ss_pred             EEecCCccccCCCceEecCCCCEEEEeECCccCC
Confidence            76433322211  222356788999999987754

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=1.9e-14  Score=85.00  Aligned_cols=122  Identities=13%  Similarity=0.151  Sum_probs=79.9

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      ++.+.+|+++.|.|.+.+.|    .+.+.|+++.  .   .+.         ...++.....+....|.|.++...|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (240)
T 1moe_A           10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (240)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEE
Confidence            35788999999999999887    6789999842  1   111         1246666555556789999999999999


Q ss_pred             EEEEEecCCce-eEEEEEEEecCC-----CCeecc---CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         64 YMCQASNNLGS-SQQFIQLSGIPN-----IPVFQK---SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        64 y~C~~~~~~~~-~~~~~~l~~~~~-----~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      |.|.+.+..+. ......|.+...     ++....   ......++.+.|.|...+.++......|||+
T Consensus        90 Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           90 YYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            99999987543 222334444322     122211   1224568889999999776532223445554

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.63  E-value=2e-14  Score=75.19  Aligned_cols=82  Identities=18%  Similarity=0.290  Sum_probs=63.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCE-Eec-------cCCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT-AIT-------LGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~-~~~-------~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++. .+.       ...++...... ....|.|.++...|.|.|+|.+.+ .
T Consensus        15 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~   93 (108)
T 3m45_A           15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-M   93 (108)
T ss_dssp             CEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-S
T ss_pred             eeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-C
Confidence            4678899999999999998989999998764 222       22355543222 356899999999999999999999 7


Q ss_pred             ceeEEEEEEEec
Q psy12132         73 GSSQQFIQLSGI   84 (126)
Q Consensus        73 ~~~~~~~~l~~~   84 (126)
                      +.......|.+.
T Consensus        94 ~~~~~~~~L~V~  105 (108)
T 3m45_A           94 PVKTSKAYLTVL  105 (108)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            777777777765

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.6e-14  Score=75.12  Aligned_cols=65  Identities=17%  Similarity=0.326  Sum_probs=57.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.+.+|+++.|.|.+ +.|.+.+.|++++..+....++.+..++....|.|.++...|.|.|+|.
T Consensus        17 ~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A           17 NLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE
T ss_pred             cEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            4677889999999995 7889999999999888777787777666677899999999999999998

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.62  E-value=4.9e-14  Score=85.11  Aligned_cols=122  Identities=14%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++     ..+.         ...++.....+....|.|.+++..|.|.|.|.
T Consensus        21 ~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  100 (276)
T 3auv_A           21 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ  100 (276)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEE
Confidence            356889999999999998888999999853     1221         13466665555567899999999999999999


Q ss_pred             EecCCce-eEEEEEEEecCC-------------CCeecc---CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         68 ASNNLGS-SQQFIQLSGIPN-------------IPVFQK---SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        68 ~~~~~~~-~~~~~~l~~~~~-------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      +.+..+. ......|.+...             ++....   ......++.+.|.|...+.++......|||+
T Consensus       101 ~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          101 QHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             ECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEc
Confidence            9986432 122233443322             112111   2234568899999999776532223445554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.62  E-value=2.7e-14  Score=82.62  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEe------------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++....    ..|.|.++...|.|.|+|.+.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G~Y~C~~~   85 (212)
T 1f97_A           10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNGEYTCMVS   85 (212)
T ss_dssp             EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCEEEEEEEE
T ss_pred             CeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCeEEEEEEE
Confidence            456788999999999998899999999976432            1223444332    379999999999999999999


Q ss_pred             cCCc--eeEEEEEEEecCC--CCeeccCcceeCCCeeEEEEE-EccCCc
Q psy12132         70 NNLG--SSQQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQ-VDTYSA  113 (126)
Q Consensus        70 ~~~~--~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~~~~~  113 (126)
                      +..|  .....+.|.+...  .+..........++.+.|.|. ..+.++
T Consensus        86 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  134 (212)
T 1f97_A           86 EEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPP  134 (212)
T ss_dssp             ETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSC
T ss_pred             ccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCC
Confidence            8765  4455555555432  233333334567888999999 455544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.62  E-value=8e-14  Score=82.68  Aligned_cols=122  Identities=17%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|+++.     ..+.         ...++..........|.|.+++..|.|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (242)
T 2znx_A           10 TLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (242)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence            367889999999999998888999999842     1111         13466655455567899999999999999999


Q ss_pred             EecCCcee-EEEEEEEecCCC------------C-eecc--CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         68 ASNNLGSS-QQFIQLSGIPNI------------P-VFQK--SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        68 ~~~~~~~~-~~~~~l~~~~~~------------~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      +.+..+.. .....|.+...+            + ....  ......++.+.|.|...+.+.......|||+
T Consensus        90 ~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           90 QSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             ECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            99864321 122334433221            1 1111  1234568899999999765421223445554

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.61  E-value=8.1e-15  Score=83.24  Aligned_cols=103  Identities=15%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             eeccCCccEEEEEEeee--cCCCeeEEEECCEEec----------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYA--NPPAKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~--~p~~~~~w~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +.+.+|+++.|.|...+  .+.+.+.|++++..+.          ...++.+..++   .|.|.++...|.|.|+|.+.+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEEe
Confidence            66789999999995433  4566899999986542          23455554444   599999999999999999999


Q ss_pred             CCcee--EEEEEEEecCC--CCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         71 NLGSS--QQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        71 ~~~~~--~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ..|..  ...+.|.+...  .|.+.     .....+.|+|...+.++
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~~p~i~-----~~~~~v~L~C~~~g~p~  124 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVSKPMIY-----WECSNATLTCEVLEGTD  124 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCCCCEEE-----EETTTTEEEEECSSCSS
T ss_pred             CCCCEEEEEEEEEEEeCCCCCCEEE-----ecCCcEEEEEEecCCCC
Confidence            88775  55666665432  22222     12335899999877765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.61  E-value=2.5e-14  Score=83.11  Aligned_cols=110  Identities=16%  Similarity=0.244  Sum_probs=76.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+.+.+.+.|++.  +.   .+.         ...++..........|.|.++...|.|.|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   89 (213)
T 3mj8_L           10 VSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQS   89 (213)
T ss_dssp             EEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEe
Confidence            5678899999999999889999999982  21   110         224666555556778999999999999999999


Q ss_pred             ecCCc---eeEEEEEEEecC---CCCeeccC---cceeCCCeeEEEEEEccCC
Q psy12132         69 SNNLG---SSQQFIQLSGIP---NIPVFQKS---SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        69 ~~~~~---~~~~~~~l~~~~---~~~~~~~~---~~~~~~~~~~l~~~~~~~~  112 (126)
                      .+..+   .......|.+..   .+|.+...   .....++.+.|+|...+..
T Consensus        90 ~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~  142 (213)
T 3mj8_L           90 WDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFY  142 (213)
T ss_dssp             EETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEB
T ss_pred             ccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeecee
Confidence            98876   333344454431   23333221   1123578899999997753

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.61  E-value=1.1e-14  Score=83.57  Aligned_cols=82  Identities=20%  Similarity=0.277  Sum_probs=70.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEec-CCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+....++..........|.|.+ +...|.|.|+|.+.|..|.....+.|
T Consensus       114 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  193 (197)
T 2j8h_A          114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL  193 (197)
T ss_dssp             EEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEE
Confidence            34567999999999999999999999999888777777766666667899999 99999999999999999988888877


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       194 ~V~  196 (197)
T 2j8h_A          194 DVA  196 (197)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            763

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.61  E-value=8e-14  Score=81.34  Aligned_cols=111  Identities=16%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             ceeccCCccEEEEEEeeecCC-----CeeEEEECCEEecc---------------CCcEEEEec---CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP-----AKVEWFRDGTAITL---------------GGRIDMHVS---SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-----~~~~w~~~~~~~~~---------------~~~~~~~~~---~~~~~l~i~~~~~   58 (126)
                      .+.+..|+++.|.|.+.+.|.     +.+.|++++..+..               ..+..+...   .....|.|.++..
T Consensus        10 ~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   89 (222)
T 3sbw_C           10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKL   89 (222)
T ss_dssp             EEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCG
T ss_pred             cEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccc
Confidence            356788999999999876663     37999997633210               123333221   1346899999999


Q ss_pred             CCCEEEEEEEecCCceeEEEEEEEecCCCCeeccC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|+|.+.+ .+.....+.|.+...+......  .....++.+.|.|.+.+.++
T Consensus        90 ~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~  145 (222)
T 3sbw_C           90 QDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPK  145 (222)
T ss_dssp             GGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSC
T ss_pred             ccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCC
Confidence            999999999998 5566666666664333221111  13346778999999977543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=8e-16  Score=79.92  Aligned_cols=68  Identities=21%  Similarity=0.375  Sum_probs=58.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC----cEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ++.+.+|+++.|.|.+.+.| +.+.|++++..+....    ++.+...+....|.|.++...|.|.|+|.+.|
T Consensus        17 ~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           17 DQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             CEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             ceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC
Confidence            45678899999999999888 9999999998877655    56676666677899999999999999999987

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.61  E-value=7e-14  Score=81.31  Aligned_cols=114  Identities=15%  Similarity=0.164  Sum_probs=79.7

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +.+..|+++.|.|.+ +.|.|  .+.|.+.+..+   .+...  ......|.|.+++..|.|.|.|.+.+..+...+.+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            578899999999999 88888  99999854322   22221  233468999999999999999999998888777888


Q ss_pred             EEecCCCCeecc-CcceeCCCeeEEEEEEccCCcce--eEEEEEEE
Q psy12132         81 LSGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSAII--QYLLKFRE  123 (126)
Q Consensus        81 l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~r~  123 (126)
                      |.|...|..... ......++.+ |+|.+.+..|..  ...+.|.+
T Consensus        91 ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk  135 (210)
T 1gsm_A           91 LLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLV  135 (210)
T ss_dssp             EEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEE
T ss_pred             EEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEE
Confidence            887644432221 2233355667 999998765543  23445544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=8.8e-15  Score=76.43  Aligned_cols=67  Identities=16%  Similarity=0.363  Sum_probs=58.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +.+.+|+++.|.|.+ +.|.+.+.|++++..+... .++.+...+....|.|.++...|.|.|+|.+.+
T Consensus        26 ~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           26 YQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             EEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             EEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence            567889999999999 6888999999999888766 677776666677999999999999999999954

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.61  E-value=2.8e-14  Score=86.32  Aligned_cols=111  Identities=16%  Similarity=0.288  Sum_probs=83.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~   79 (126)
                      ++.+.+|+.+.|.|.+.+.|. .+.|++ ++..+....++.....+....|.|.++...|.|.|+|.+.+..|.. ...+
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~   91 (291)
T 2wim_A           13 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV   91 (291)
T ss_dssp             EEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEE
T ss_pred             ceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEE
Confidence            457789999999999998764 899999 6777766677777766667799999999999999999999987765 3455


Q ss_pred             EEEecCCCCeec--cCcceeCCCeeEEEEEEccCCc
Q psy12132         80 QLSGIPNIPVFQ--KSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        80 ~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.+...+....  .......++.+.|.|...+.++
T Consensus        92 ~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~  127 (291)
T 2wim_A           92 VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPA  127 (291)
T ss_dssp             EEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSC
T ss_pred             EEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCC
Confidence            565543332221  1223457888999998876644

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.61  E-value=3.8e-14  Score=82.31  Aligned_cols=112  Identities=19%  Similarity=0.279  Sum_probs=75.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++..     ..+.         ...++..........|.|.++...|.|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3r06_A           10 SLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQ   89 (213)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEe
Confidence            367889999999999998888999999832     1111         13466665555667999999999999999999


Q ss_pred             EecCCce-eEEEEEEEe--cCCCCeecc-C--cceeCCCeeEEEEEEccCCc
Q psy12132         68 ASNNLGS-SQQFIQLSG--IPNIPVFQK-S--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        68 ~~~~~~~-~~~~~~l~~--~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+..+. ......+.+  ...+|.+.. .  .....++.+.|+|.+.+..|
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p  141 (213)
T 3r06_A           90 QYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYP  141 (213)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             cccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecC
Confidence            9876432 222233333  223343322 1  11234667999999976544

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.61  E-value=1.5e-14  Score=73.72  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=59.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+.....         ..|.|.++...|.|.|+|.+.|..|... ..+.
T Consensus        12 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~   82 (91)
T 3bfo_A           12 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE   82 (91)
T ss_dssp             CEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred             ccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEE
Confidence            35678899999999999999999999999987654321         2799999999999999999999887543 3445


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      +.+
T Consensus        83 l~V   85 (91)
T 3bfo_A           83 III   85 (91)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.61  E-value=5.7e-14  Score=81.52  Aligned_cols=112  Identities=17%  Similarity=0.286  Sum_probs=75.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEEe------------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|+++  +..+            ....++.....+....|.|.++...|.|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (210)
T 1lk3_L            9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (210)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence            46788999999999999888889999984  2211            112466655555567899999999999999999


Q ss_pred             EecCCceeE-EEEEEEec--CCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         68 ASNNLGSSQ-QFIQLSGI--PNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        68 ~~~~~~~~~-~~~~l~~~--~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+..+... ....+.+.  ..+|.+.. .+  ....+..+.|+|.+.+..|
T Consensus        89 ~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p  140 (210)
T 1lk3_L           89 QSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYP  140 (210)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeC
Confidence            998765332 12233332  22343332 11  1235778999999976433

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.60  E-value=8.9e-14  Score=82.66  Aligned_cols=122  Identities=15%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEe---------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++..     ..+         ....++..........|.|.++...|.|.|.|.
T Consensus        13 ~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (250)
T 3esu_F           13 SLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQ   92 (250)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEE
Confidence            356789999999999999999999999842     111         112456555555567899999999999999999


Q ss_pred             EecCCcee-EEEEEEEecCC------------------CC-eecc--CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         68 ASNNLGSS-QQFIQLSGIPN------------------IP-VFQK--SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        68 ~~~~~~~~-~~~~~l~~~~~------------------~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      +.+..+.. .....|.+...                  ++ ....  ......++.+.|.|...+.+.......|||+
T Consensus        93 ~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F           93 QGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             ECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             EeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            98864432 12223333221                  11 1111  1224568889999998765422233455665

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=8.4e-16  Score=81.69  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             ceeccCCccEEEEEEeeec---CCCeeEEEECCE-Eecc--CCcEEEEec--C----CeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYAN---PPAKVEWFRDGT-AITL--GGRIDMHVS--S----EKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~---p~~~~~w~~~~~-~~~~--~~~~~~~~~--~----~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+.+|+++.|.|.+.+.   |.|.+.|+|+.. .+..  ..++.+...  .    ....|.|.++...|.|.|+|.+.
T Consensus        21 ~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevs  100 (118)
T 2edn_A           21 SVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVK  100 (118)
T ss_dssp             CCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEE
T ss_pred             CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEE
Confidence            4678899999999999874   789999999742 1211  234443211  1    14689999999999999999999


Q ss_pred             cCCceeEEEEEEEecC
Q psy12132         70 NNLGSSQQFIQLSGIP   85 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~~   85 (126)
                      |..|..++.+.|.|..
T Consensus       101 n~~g~~s~~~~L~V~~  116 (118)
T 2edn_A          101 AKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CSSCEEEEEECCEEEC
T ss_pred             EcCCcEEEEEEEEEEc
Confidence            9999988888887753

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.60  E-value=2.5e-14  Score=87.21  Aligned_cols=109  Identities=20%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC---CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE---
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ---   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~---   76 (126)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+...   .++.....+   .|.|.++...|.|.|+|.+.|..|...   
T Consensus       118 ~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  194 (304)
T 2yd9_A          118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAGVRYSSP  194 (304)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTS---CEEECSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCe---EEEEccCCcccCEEEEEEEEeCCCCEEecc
Confidence            35667999999999999999999999999887543   233333232   799999999999999999999887665   


Q ss_pred             EEEEEEecCCCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         77 QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      ..+.+.+...+|.+...   .....++.+.|.|...+.++.
T Consensus       195 ~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p  235 (304)
T 2yd9_A          195 ANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP  235 (304)
T ss_dssp             EEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC
T ss_pred             EEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC
Confidence            44555443344444322   223567889999999776543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.60  E-value=1.1e-14  Score=91.57  Aligned_cols=109  Identities=17%  Similarity=0.293  Sum_probs=81.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+...... ...  ....|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       232 ~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  308 (404)
T 3p3y_A          232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK-FEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR  308 (404)
T ss_dssp             EEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEE-EEG--GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             ceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccc-ccc--cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEE
Confidence            34678999999999999999999999999877544432 221  123899999999999999999999999888888777


Q ss_pred             ecCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         83 GIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +...|.....  ......++.+.|.|...+.++.
T Consensus       309 V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  342 (404)
T 3p3y_A          309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP  342 (404)
T ss_dssp             EEEEEEEEECCCCEEECTTCCEEEECEEEEESCC
T ss_pred             EeCCCeeeccCCcceeecCCcEEEEEEccccCCC
Confidence            6543322221  1223457889999999776543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.60  E-value=3.4e-14  Score=82.44  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ..+.+|+++.|.|.+.+.|.+. +.|++++..+....          ..|.|.++...|.|.|+|.+.+...+.  .+.|
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~~~s~--~~~l   84 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLSTLSD--PVQL   84 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTSBCCC--CEEE
T ss_pred             eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCCcccc--cEEE
Confidence            4678899999999999888775 99999998775432          379999999999999999998854444  3444


Q ss_pred             EecCCCCeecc-CcceeCCCeeEEEEEEccCCcce
Q psy12132         82 SGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSAII  115 (126)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  115 (126)
                      .+...+..... ......++.+.|.|...+..+..
T Consensus        85 ~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~  119 (204)
T 3sgj_C           85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH  119 (204)
T ss_dssp             EEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCE
T ss_pred             EEecCceEecCCceeEeCCCcEEEEEEecCCCCCc
Confidence            44333322222 22334688999999997665533

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=3.7e-14  Score=74.82  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=62.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC----------cEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----------RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++.+.+|+++.|.|.+.+  .|.+.|+++|..+....          ++.+..++....|.|.++...|.|.|+|...+.
T Consensus        17 d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~   94 (112)
T 2e6q_A           17 DVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG   94 (112)
T ss_dssp             CEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETT
T ss_pred             CeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECC
Confidence            567889999999999986  78899999999998776          887777777789999999999999997754432


Q ss_pred             CceeEEEEEEEec
Q psy12132         72 LGSSQQFIQLSGI   84 (126)
Q Consensus        72 ~~~~~~~~~l~~~   84 (126)
                         ......|.|.
T Consensus        95 ---~~ssA~L~V~  104 (112)
T 2e6q_A           95 ---VQDSAALTIQ  104 (112)
T ss_dssp             ---EEEEEEEEEE
T ss_pred             ---eeEEEEEEEe
Confidence               2334555554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.60  E-value=5.1e-14  Score=81.77  Aligned_cols=111  Identities=17%  Similarity=0.307  Sum_probs=75.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--EEe------------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++  ..+            ....++.....+....|.|.++...|.|.|+|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3d9a_L           10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (213)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence            456889999999999998888899999742  111            112466665555667999999999999999999


Q ss_pred             EecCCceeE-EEEEEEec--CCCCeecc-Cc--ceeCCCeeEEEEEEccCC
Q psy12132         68 ASNNLGSSQ-QFIQLSGI--PNIPVFQK-SS--RRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        68 ~~~~~~~~~-~~~~l~~~--~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~  112 (126)
                      +.+..+... ....+.+.  ..+|.+.. .+  ....++.+.|+|...+..
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~  140 (213)
T 3d9a_L           90 QSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY  140 (213)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred             eecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeec
Confidence            998765432 12233332  22343322 11  123467899999997643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.60  E-value=5e-14  Score=81.56  Aligned_cols=112  Identities=17%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEE----------------CCEEecc-----CCcEEEEe---cCCeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFR----------------DGTAITL-----GGRIDMHV---SSEKHSLLV   53 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~----------------~~~~~~~-----~~~~~~~~---~~~~~~l~i   53 (126)
                      .+.+.+|+++.|.|.+.+.+    .+.+.|++                ++..+..     ..++.+..   ......|.|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i   88 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV   88 (214)
T ss_dssp             EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred             eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence            35788999999999998776    46899988                3333221     23444322   113457999


Q ss_pred             ecCCCCCCEEEEEEEecCCceeEEEEEEEecCCCCe--eccCcceeCCCeeEEEEEE-ccCCc
Q psy12132         54 RHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV--FQKSSRRLGPDGYRLVWQV-DTYSA  113 (126)
Q Consensus        54 ~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~-~~~~~  113 (126)
                      .++...|.|.|+|.+.+..+.....+.|.+...+..  .........++.+.|.|.. .+.++
T Consensus        89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~  151 (214)
T 3jz7_A           89 TNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP  151 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSS
T ss_pred             ccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCC
Confidence            999999999999999998887777777776543332  2222234567889999999 55544

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.59  E-value=3.4e-14  Score=87.63  Aligned_cols=104  Identities=13%  Similarity=0.253  Sum_probs=75.2

Q ss_pred             ccCCccEEEEEEeeecC-CCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC--CceeEEE--
Q psy12132          5 TAPDMRAEIICNVYANP-PAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN--LGSSQQF--   78 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~--   78 (126)
                      +.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..++... .   ..|.|.++...|.|.|+|.+.|.  .|.....  
T Consensus       140 ~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~---~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s  215 (329)
T 3oq3_B          140 THDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS  215 (329)
T ss_dssp             SSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T---TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEE
T ss_pred             EeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C---CEEEEeecChhhCEEEEEEEEecccCCCceeEEE
Confidence            45699999999999999 899999999988753 3344333 3   38999999999999999999986  4433333  


Q ss_pred             --EEEEecCCC----Ceecc-CcceeCCCeeEEEEEEccCC
Q psy12132         79 --IQLSGIPNI----PVFQK-SSRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        79 --~~l~~~~~~----~~~~~-~~~~~~~~~~~l~~~~~~~~  112 (126)
                        +.|.+...+    +.+.. ......++.+.|.|...+.+
T Consensus       216 ~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p  256 (329)
T 3oq3_B          216 RCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTS  256 (329)
T ss_dssp             EEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETT
T ss_pred             eeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECC
Confidence              556654433    33311 12234678899999998776

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.59  E-value=3.1e-14  Score=93.00  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=75.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+.+|+.+.|.|.+.+.|.|.+.|++++..+....+.. .   ....|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       336 ~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~---~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~  411 (527)
T 3qs9_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-D---NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN  411 (527)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-S---SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC
T ss_pred             EEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc-c---CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEE
Confidence            456789999999999999999999999998886544321 1   234799999999999999999999999888888888


Q ss_pred             ecCCCCeeccCcceeCCCeeEEEEEEccCCcc
Q psy12132         83 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      |. .+|.+.....     ...|.|.+.|.++.
T Consensus       412 V~-~~P~i~~~~~-----~~~l~C~a~g~P~p  437 (527)
T 3qs9_E          412 IR-RKPQVLAEAS-----ASQASCFSDGYPLP  437 (527)
T ss_dssp             ---CCCEEEECCC-----CE---EEEECSSCC
T ss_pred             Ee-cCCeEEEeCC-----CCEEEEEEEEEcCC
Confidence            75 4444433221     23579999887653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.59  E-value=1.2e-13  Score=78.16  Aligned_cols=100  Identities=18%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.+.|.+. +.|++++..+...          ...|.|.++...|.|.|+|.+.+..++...  .+
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~--~l   84 (175)
T 1fnl_A           17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLSTLSDPV--QL   84 (175)
T ss_dssp             SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSSCCCCCE--EE
T ss_pred             eeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEeeCCcccccE--EE
Confidence            4678899999999999888775 7899999776532          237999999999999999999986554444  44


Q ss_pred             EecCCCCeecc-CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+...++.... ......++.+.|.|...+.++.
T Consensus        85 ~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  118 (175)
T 1fnl_A           85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTAL  118 (175)
T ss_dssp             EEECSSEEEECSCSEEETTCCEEEEEEECTTCCC
T ss_pred             EEeCCCceeeCCCceecCCCCEEEEEEcCCCCCc
Confidence            44333322222 2223468889999999777654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=82.74  Aligned_cols=106  Identities=10%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc--eeEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l   81 (126)
                      .+.+|+++.|.|.+.+ +.+.+.|+|++..+..... ..........|.|.++...|.|.|+|.+.|..|  .....+.+
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   92 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLEL   92 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEE
Confidence            4678999999999987 7789999999876542111 011112346899999999999999999999876  22444555


Q ss_pred             Eec--CCCCeeccCc--ceeCCCeeEEEEEEccC
Q psy12132         82 SGI--PNIPVFQKSS--RRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        82 ~~~--~~~~~~~~~~--~~~~~~~~~l~~~~~~~  111 (126)
                      .+.  ..+|.+...+  ....++.+.|.|...+.
T Consensus        93 ~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~  126 (196)
T 3p2t_A           93 VMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP  126 (196)
T ss_dssp             EEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE
T ss_pred             EecCCCCCCEEEeCCcceecCCCeEEEEEecCCC
Confidence            543  3344443322  23568889999988663

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.59  E-value=1.7e-13  Score=78.33  Aligned_cols=81  Identities=21%  Similarity=0.333  Sum_probs=67.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE--CCEEec---cCCcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR--DGTAIT---LGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+..|+.+.|.|.+.+.|.|.+.|++  ++..+.   ...++.....+....|.|.++. ..|.|.|+|.+.|..|...
T Consensus       102 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~  181 (190)
T 2wv3_A          102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSAS  181 (190)
T ss_dssp             EEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEE
T ss_pred             ceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcce
Confidence            456789999999999999999999999  777654   3456666665556689999999 7999999999999999888


Q ss_pred             EEEEEEe
Q psy12132         77 QFIQLSG   83 (126)
Q Consensus        77 ~~~~l~~   83 (126)
                      ..+.|.+
T Consensus       182 ~~~~l~V  188 (190)
T 2wv3_A          182 VSTVLRV  188 (190)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            8877765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.59  E-value=3.8e-14  Score=90.34  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=74.5

Q ss_pred             eeccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEe------cCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          3 SITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV------SSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      ..+.+|+++.|.|.+.+ .|.|.+.|++++..+.....+....      ......|.|.++...|.|.|+|.+.|.   .
T Consensus       237 ~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~  313 (423)
T 3qs7_E          237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---P  313 (423)
T ss_dssp             EEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---E
T ss_pred             eEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---C
Confidence            45678999999999998 6779999999987664432221110      011237999999999999999999997   5


Q ss_pred             EEEEEEEecCCCCeeccC----cceeCCCeeEEEEEEccCCc
Q psy12132         76 QQFIQLSGIPNIPVFQKS----SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ...+.|.|...+......    .....++.+.|.|.+.+.++
T Consensus       314 ~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~  355 (423)
T 3qs7_E          314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ  355 (423)
T ss_dssp             EEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESC
T ss_pred             CceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCC
Confidence            555556654333222111    22345778999999988765

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.59  E-value=1.8e-13  Score=83.44  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             eeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|... +.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|..|... .+.+
T Consensus        11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l   89 (312)
T 2y23_A           11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI   89 (312)
T ss_dssp             EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred             EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence            5677899999999885 5788999999999998877788777766677999999999999999999999877444 4445


Q ss_pred             EecC------------CCCeecc---CcceeCCCeeEEEEEEc-cCC
Q psy12132         82 SGIP------------NIPVFQK---SSRRLGPDGYRLVWQVD-TYS  112 (126)
Q Consensus        82 ~~~~------------~~~~~~~---~~~~~~~~~~~l~~~~~-~~~  112 (126)
                      .+..            .|.....   ......++.+.|.|... +.+
T Consensus        90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p  136 (312)
T 2y23_A           90 DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSG  136 (312)
T ss_dssp             CHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCS
T ss_pred             EEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCC
Confidence            5421            2221111   23345678899999997 444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=1.3e-14  Score=90.82  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC----CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ++.+.+|+++.|.|.+.| |.|.+.|++++..+...    .++.. .++   .|.|.+++..|.|.|+|.+.|..|...+
T Consensus       255 ~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~---~L~I~~v~~~D~G~Y~C~a~N~~g~~~~  329 (361)
T 2xot_A          255 AWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG---DLFFKKVQVEDGGVYTCYAMGETFNETL  329 (361)
T ss_dssp             CCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT---EEEESSCCTTSCEEEEEEEECSSCEEEE
T ss_pred             CceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC---eEEEeecCcccCEEEEEEEecCCCccEE
Confidence            457889999999999998 99999999976543221    25555 444   7999999999999999999999999988


Q ss_pred             EEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         78 FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.+.|...+         ..+..+.+.|.+.|.++
T Consensus       330 ~~~l~V~~~~---------~~g~~~~l~C~~~g~P~  356 (361)
T 2xot_A          330 SVELKVYNFT---------LHGHHDTLNAAADPWSH  356 (361)
T ss_dssp             EEEEEEESSC---------CC---------------
T ss_pred             EEEEEEEeee---------ccCCceEEEEEeCCCCC
Confidence            8888875322         35557889999877754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.59  E-value=3.8e-14  Score=86.58  Aligned_cols=82  Identities=18%  Similarity=0.408  Sum_probs=71.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+....++.+... +....|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus       232 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l  311 (317)
T 2y25_A          232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV  311 (317)
T ss_dssp             EEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEE
Confidence            4677899999999999999999999999988877777766554 556789999999999999999999999998888888


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       312 ~V~  314 (317)
T 2y25_A          312 SVF  314 (317)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.59  E-value=2.1e-14  Score=76.88  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECCEEecc-----CCcEEEEec---CCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDGTAITL-----GGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~~~~~~-----~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.+.+|+++.|.|.+.+.|  .+.+.|++++..+..     .........   .....|.|.++...|.|.|+|.+.|..
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            4677899999999999844  568899998763321     111111111   123479999999999999999999999


Q ss_pred             ceeEEEEEEEecC
Q psy12132         73 GSSQQFIQLSGIP   85 (126)
Q Consensus        73 ~~~~~~~~l~~~~   85 (126)
                      |...+.+.|.|..
T Consensus        98 g~~~~~~~l~V~~  110 (122)
T 3s35_X           98 MTKKNSTFVRVHE  110 (122)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CceEEEEEEEEec
Confidence            9888888887753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.58  E-value=1e-14  Score=94.81  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=80.6

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCC-cEEEEecC----CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGG-RIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +.+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ++......    ....|.|.++...|.|.|+|.+.|..|...
T Consensus       323 ~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  402 (524)
T 2ec8_A          323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA  402 (524)
T ss_dssp             EEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEE
Confidence            5678899999999999999998 99999998776443 33322222    245899999999999999999999999988


Q ss_pred             EEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCcc
Q psy12132         77 QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      ..+.|.+.. +|.+........+   .|.|.+.|.++.
T Consensus       403 ~~~~l~V~~-~P~i~~~~~~~~g---~l~C~~~g~P~p  436 (524)
T 2ec8_A          403 IAFNVYVNT-KPEILTYDRLVNG---MLQCVAAGFPEP  436 (524)
T ss_dssp             EEEEEEECE-EEEEEEEECCSSS---CEEEEEEEESCC
T ss_pred             EEEEEEEec-CCeEeecccCcCc---EEEEEEEeecCC
Confidence            888888753 3333332222222   899999776553

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=75.16  Aligned_cols=67  Identities=19%  Similarity=0.512  Sum_probs=58.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +.+.+|+++.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.+
T Consensus        21 ~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           21 VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             EEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             EEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC
Confidence            4677899999999998 888999999999988777777777666667999999999999999999865

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.58  E-value=6.4e-14  Score=81.30  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.  +.+.+.|+++  +..+.            ...++..........|.|.++...|.|.|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   87 (211)
T 3tv3_L           10 ASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGS   87 (211)
T ss_dssp             EEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEE
Confidence            5678999999999998  8889999983  21111            224666555556678999999999999999999


Q ss_pred             ecCCc--eeEEEEEEEecC---CCCeeccCc---ceeCCCeeEEEEEEccCC
Q psy12132         69 SNNLG--SSQQFIQLSGIP---NIPVFQKSS---RRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        69 ~~~~~--~~~~~~~l~~~~---~~~~~~~~~---~~~~~~~~~l~~~~~~~~  112 (126)
                      .+..+  .......|.+..   .+|.+...+   ....++.+.|.|.+.+..
T Consensus        88 ~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~  139 (211)
T 3tv3_L           88 LVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFY  139 (211)
T ss_dssp             EETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEB
T ss_pred             ecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeec
Confidence            98776  333444555432   233332211   112478899999997653

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.58  E-value=3.5e-14  Score=73.22  Aligned_cols=76  Identities=22%  Similarity=0.386  Sum_probs=60.0

Q ss_pred             eeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+. +.|.+.+.|++++....... . ....+   .|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        20 ~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~-~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   94 (98)
T 1gl4_B           20 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-A-MDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL   94 (98)
T ss_dssp             EEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-E-EEETT---EEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce-e-ecCCC---EEEEeCCChhhCEEEEEEecCCCCccccEEEE
Confidence            5678999999999998 68899999999753332222 1 22233   79999999999999999999999888877777


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus        95 ~V   96 (98)
T 1gl4_B           95 HV   96 (98)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.58  E-value=3.3e-14  Score=89.29  Aligned_cols=112  Identities=21%  Similarity=0.273  Sum_probs=80.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE-EE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~   79 (126)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ++..........|.|.++...|.|.|+|.+.|..|.... .+
T Consensus       222 ~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  301 (395)
T 1bih_A          222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL  301 (395)
T ss_dssp             EEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEE
T ss_pred             eEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEE
Confidence            456789999999999999999999999998876432  222221222347999999999999999999998887554 66


Q ss_pred             EEEecCCCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         80 QLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        80 ~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .|.+...|......   .....++.+.|.|...+.++.
T Consensus       302 ~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  339 (395)
T 1bih_A          302 KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP  339 (395)
T ss_dssp             EEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCC
T ss_pred             EEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCC
Confidence            66654322222221   223567889999999776543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.58  E-value=5.2e-14  Score=80.97  Aligned_cols=107  Identities=12%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee--EEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l   81 (126)
                      .+.+|+++.|.|.+.+.|. .+.|+|++..+..... ..........|.|.++...|.|.|+|.+.|..|..  ...+.|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   92 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLEL   92 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEE
Confidence            5678999999999987655 9999999876532110 00112234689999999999999999998876532  234445


Q ss_pred             EecC--CCCeeccCc--ceeCCCeeEEEEEEccCC
Q psy12132         82 SGIP--NIPVFQKSS--RRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        82 ~~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~  112 (126)
                      .+..  .+|.+...+  ....++.+.|.|...+.+
T Consensus        93 ~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p  127 (196)
T 2d3v_A           93 VVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF  127 (196)
T ss_dssp             EEECSSCCCEEEC-----------CEEEEEESSCC
T ss_pred             EecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC
Confidence            4432  234433322  235678899999997765

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.58  E-value=8.9e-14  Score=79.97  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=74.1

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEECCEEec---cC---------------CcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTAIT---LG---------------GRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~---~~---------------~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|.+.+ .+.+.+.|++++..+.   ..               .++.+.   .+..|.|.+++..|.|
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGGCE
T ss_pred             EEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcccCc
Confidence            467789999999999875 4456899999876432   10               133332   2347999999999999


Q ss_pred             EEEEEEecCCceeEEEEEEEecCCC--CeeccCcc-eeCCC-eeEEEEEEccCCc
Q psy12132         63 NYMCQASNNLGSSQQFIQLSGIPNI--PVFQKSSR-RLGPD-GYRLVWQVDTYSA  113 (126)
Q Consensus        63 ~y~C~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~~~~-~~~l~~~~~~~~~  113 (126)
                      .|.|.+.+..+.....+.|.|...+  |.+..... ...+. .+.|+|.+.+.++
T Consensus        84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p  138 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADD  138 (193)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCT
T ss_pred             eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCC
Confidence            9999999987766666777765433  22222221 12343 6999999977543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.57  E-value=6.7e-14  Score=75.19  Aligned_cols=85  Identities=13%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEE-ec-------cCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTA-IT-------LGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~-~~-------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++.+.. +.       ...++.... ......|.|.+++..|.|.|+|.+.+. 
T Consensus        10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-   88 (124)
T 3rbg_A           10 TITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-   88 (124)
T ss_dssp             EEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-
T ss_pred             cEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-
Confidence            46788999999999999989999999975432 21       334444432 223468999999999999999999998 


Q ss_pred             ceeEEEEEEEecCCC
Q psy12132         73 GSSQQFIQLSGIPNI   87 (126)
Q Consensus        73 ~~~~~~~~l~~~~~~   87 (126)
                      +.....+.|.|...|
T Consensus        89 g~~~~~~~l~V~~~P  103 (124)
T 3rbg_A           89 SVSTKEVKVIVLATM  103 (124)
T ss_dssp             SEEEEEEEEEEECC-
T ss_pred             CCCcEEEEEEEEeCC
Confidence            888888888775444

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.57  E-value=3.6e-14  Score=80.82  Aligned_cols=109  Identities=16%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc--CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE--E
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--Q   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~--~   77 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+..  ..++....++   .|.|.++...|.|.|+|.+.+..+...  .
T Consensus        11 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   87 (189)
T 2v5t_A           11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFR   87 (189)
T ss_dssp             SEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred             CEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEEEEcCCCceEEE
Confidence            45678899999999999989999999998876653  3455444333   699999999999999999988754332  3


Q ss_pred             EEEEEecCCCCeeccC----cceeCCCeeEEEEEEccCCc
Q psy12132         78 FIQLSGIPNIPVFQKS----SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        78 ~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.+.+...+......    .....++.+.|.|...+.++
T Consensus        88 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~  127 (189)
T 2v5t_A           88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE  127 (189)
T ss_dssp             EEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESC
T ss_pred             EEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCC
Confidence            3334332222111111    12235778999999976644

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.57  E-value=7.7e-14  Score=79.87  Aligned_cols=82  Identities=16%  Similarity=0.279  Sum_probs=70.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCC-CCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ..+..|+.+.|.|.+.+.|.|.+.|++++..+....++..........|.|.++.. .|.|.|+|.+.|..|.....+.|
T Consensus       113 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  192 (197)
T 3lcy_A          113 YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDV  192 (197)
T ss_dssp             EEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEE
T ss_pred             eeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEE
Confidence            34567999999999999999999999999988877777776665567899999985 89999999999999998888877


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       193 ~V~  195 (197)
T 3lcy_A          193 EIQ  195 (197)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.57  E-value=6e-13  Score=79.62  Aligned_cols=112  Identities=13%  Similarity=0.214  Sum_probs=75.8

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEEe---c--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTAI---T--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~---~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.|  .+.+.|+++  +..+   .              ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (256)
T 1nqb_A            9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS   88 (256)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence            46788999999999998775  578999984  2111   0              1246655543  3456899999999


Q ss_pred             CCCEEEEEEEecCCce-----eEEEEEEEecCCCCeeccC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGS-----SQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~-----~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..|.     ....+.|.+...+.....+  .....++.+.|.|...+.++
T Consensus        89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  150 (256)
T 1nqb_A           89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIV  150 (256)
T ss_dssp             GGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCB
T ss_pred             hhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCccc
Confidence            9999999999987552     1223455554333222211  22457889999999977654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.57  E-value=8.5e-14  Score=81.31  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=75.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....         ...|.|.++...|.|.|+|.+.+..+.. ...+.
T Consensus        27 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~   97 (218)
T 3k0w_A           27 SKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ   97 (218)
T ss_dssp             CEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEE
T ss_pred             CeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEE
Confidence            4667899999999999999999999999998765432         2379999999999999999999886643 33344


Q ss_pred             EEecCCC--------------CeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         81 LSGIPNI--------------PVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        81 l~~~~~~--------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +.+...+              |.+...   .....++.+.|.|...+.++.
T Consensus        98 l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~  148 (218)
T 3k0w_A           98 LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP  148 (218)
T ss_dssp             EEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC
T ss_pred             EEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC
Confidence            4443221              222221   223467789999999776543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=5e-13  Score=79.89  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=77.4

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CE---Eec-------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GT---AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~---~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      .+.+.+|+++.|.|.+.+.|  .+.+.|+++  +.   .+.             ...++.+..+  .....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            35678999999999998875  678999985  21   110             1346665543  34568999999999


Q ss_pred             CCEEEEEEEecCCc-------ee--EEEEEEEecCCC--------------CeeccCc---ceeCCCeeEEEEEEccCCc
Q psy12132         60 DFGNYMCQASNNLG-------SS--QQFIQLSGIPNI--------------PVFQKSS---RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        60 d~g~y~C~~~~~~~-------~~--~~~~~l~~~~~~--------------~~~~~~~---~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.|.|.+.+..|       ..  .....|.+...+              +.+...+   ....++.+.|.|...+.++
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  168 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN  168 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence            99999999998743       11  122344443321              1122211   2346788999999877654


Q ss_pred             ceeEEEEEEE
Q psy12132        114 IIQYLLKFRE  123 (126)
Q Consensus       114 ~~~~~~~~r~  123 (126)
                      .  ...|||+
T Consensus       169 ~--~v~W~k~  176 (257)
T 1f3r_B          169 N--YLAWYQQ  176 (257)
T ss_dssp             T--CEEEEEE
T ss_pred             C--cEEEEEE
Confidence            3  2445553

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=3.1e-13  Score=80.20  Aligned_cols=120  Identities=12%  Similarity=0.181  Sum_probs=77.9

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---e--------------ccCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I--------------TLGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.|  .+.+.|+++.  ..   +              ....++.+..+  .....|.|.++..
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            46788999999999999877  5789999832  11   1              01246655543  3456899999999


Q ss_pred             CCCEEEEEEEecCCce--eEEEEEEEecCC--------------CCeeccCc---ceeCCCeeEEEEEEccCCcceeEEE
Q psy12132         59 TDFGNYMCQASNNLGS--SQQFIQLSGIPN--------------IPVFQKSS---RRLGPDGYRLVWQVDTYSAIIQYLL  119 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~--~~~~~~l~~~~~--------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~  119 (126)
                      .|.|.|.|.+.+..+.  ......|.+...              ++.+...+   ....++.+.|.|...+.++..  ..
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~--v~  168 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSN--LA  168 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTC--EE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccce--EE
Confidence            9999999999987322  122234444322              22222211   245788999999997775432  34


Q ss_pred             EEEE
Q psy12132        120 KFRE  123 (126)
Q Consensus       120 ~~r~  123 (126)
                      |||.
T Consensus       169 W~k~  172 (247)
T 2ghw_B          169 WYQQ  172 (247)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.57  E-value=9.8e-14  Score=81.70  Aligned_cols=111  Identities=15%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--E---Ee---------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--T---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+.+.+.+.|++..  .   .+         ....++..........|.|.+++..|.|.|.|.+
T Consensus        34 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  113 (237)
T 3sob_L           34 LSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQ  113 (237)
T ss_dssp             EEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEee
Confidence            56788999999999998888899999832  1   11         1134666555556778999999999999999999


Q ss_pred             ecCCce---eEEEEEEEecCCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         69 SNNLGS---SQQFIQLSGIPNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        69 ~~~~~~---~~~~~~l~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+..+.   ....+.+.....+|.+.. ..  ....++.+.|+|.+.+..|
T Consensus       114 ~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p  164 (237)
T 3sob_L          114 SYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYP  164 (237)
T ss_dssp             CSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBS
T ss_pred             ccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCC
Confidence            876542   122333333333444332 11  1223567999999977544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.57  E-value=2.2e-13  Score=81.25  Aligned_cols=121  Identities=17%  Similarity=0.201  Sum_probs=77.1

Q ss_pred             eeccCCccEEEEEEeeec--CCCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYAN--PPAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|+++.|.|.+.+.  +.+.+.|+++.  .   .+.         ...++.....+....|.|.+++..|.|.|.|
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C   91 (256)
T 3ux9_B           12 VSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYC   91 (256)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            567899999999999876  77899999842  1   111         1246666555556789999999999999999


Q ss_pred             EEecCCce---eEEEEEEEecCCC--------------------Ceecc--CcceeCCCeeEEEEEEccCCcceeEEEEE
Q psy12132         67 QASNNLGS---SQQFIQLSGIPNI--------------------PVFQK--SSRRLGPDGYRLVWQVDTYSAIIQYLLKF  121 (126)
Q Consensus        67 ~~~~~~~~---~~~~~~l~~~~~~--------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  121 (126)
                      .+.+..+.   ......|.+...+                    +.+..  ......++.+.|.|...+..+......||
T Consensus        92 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  171 (256)
T 3ux9_B           92 QVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWV  171 (256)
T ss_dssp             EEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             EEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEE
Confidence            99875431   1222334433221                    11211  12245688999999997654222234455


Q ss_pred             EE
Q psy12132        122 RE  123 (126)
Q Consensus       122 r~  123 (126)
                      |+
T Consensus       172 r~  173 (256)
T 3ux9_B          172 RQ  173 (256)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.57  E-value=2.4e-14  Score=83.33  Aligned_cols=112  Identities=20%  Similarity=0.297  Sum_probs=73.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEE-ecCC-eEEEEEecCCCCCCEEEEEEEecCCceeE-
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMH-VSSE-KHSLLVRHIKDTDFGNYMCQASNNLGSSQ-   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~-~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-   76 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....  ..... ..+. ...+.|.++...|.|.|+|.+.+..|... 
T Consensus        18 ~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~   97 (217)
T 2vr9_A           18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS   97 (217)
T ss_dssp             CEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEEC
T ss_pred             ceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCcccc
Confidence            4667899999999999999999999999998876431  11121 1221 11236788899999999999999877552 


Q ss_pred             EEEEEEecCCCCeec---cCcceeCCCeeEEEEEE-ccCCc
Q psy12132         77 QFIQLSGIPNIPVFQ---KSSRRLGPDGYRLVWQV-DTYSA  113 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~~~~~  113 (126)
                      ....+.+...++.+.   .......++.+.|.|.. .+.++
T Consensus        98 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~  138 (217)
T 2vr9_A           98 RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE  138 (217)
T ss_dssp             CCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESC
T ss_pred             ccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCC
Confidence            233333322122211   12223567889999988 55544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.57  E-value=8.8e-14  Score=81.00  Aligned_cols=109  Identities=15%  Similarity=0.305  Sum_probs=73.0

Q ss_pred             eeccCCccEEEEEEeeec-CCCeeEEEECC---E--Ee-c------------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYAN-PPAKVEWFRDG---T--AI-T------------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~---~--~~-~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|+++.|.|.+.+. |.+.+.|++..   .  .+ .            ...++..........|.|.+++..|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (218)
T 3s96_B           10 ASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAI   89 (218)
T ss_dssp             EEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCEE
Confidence            567889999999999988 88999999821   1  01 0            1135555545556789999999999999


Q ss_pred             EEEEEecCCc-----eeEEEEEEEecC---CCCeecc-C--cceeCCCeeEEEEEEccC
Q psy12132         64 YMCQASNNLG-----SSQQFIQLSGIP---NIPVFQK-S--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        64 y~C~~~~~~~-----~~~~~~~l~~~~---~~~~~~~-~--~~~~~~~~~~l~~~~~~~  111 (126)
                      |.|.+.+..|     .......|.+..   .+|.+.. .  .....++.+.|+|.+.+.
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~  148 (218)
T 3s96_B           90 YICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNF  148 (218)
T ss_dssp             EEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcc
Confidence            9999988654     222233444432   2333322 1  112345789999999774

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.56  E-value=4.3e-13  Score=81.09  Aligned_cols=112  Identities=14%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEE-CCEEecc-CCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCc-eeE
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFR-DGTAITL-GGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLG-SSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~   76 (126)
                      ++.+.+|+++.|.|.+.+.+ .+.+.|++ ++..+.. ..++.... ......|.|.++...|.|.|+|.+.+..| ...
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~   90 (291)
T 1qz1_A           11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (291)
T ss_dssp             SEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEE
T ss_pred             CceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeE
Confidence            45678899999999999876 68999999 7766553 34444432 33456899999999999999999999875 345


Q ss_pred             EEEEEEecCCCCeecc--CcceeCCCeeEEEEEEccCCc
Q psy12132         77 QFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ..+.+.+...+.....  ......++.+.|.|...+.++
T Consensus        91 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  129 (291)
T 1qz1_A           91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP  129 (291)
T ss_dssp             EEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSC
T ss_pred             EEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCC
Confidence            6666666433322221  222456888999999977654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.56  E-value=7.5e-14  Score=87.85  Aligned_cols=109  Identities=17%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.....   ..|.|.++...|.|.|+|.+.|..|.....+.+
T Consensus       231 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  307 (403)
T 3laf_A          231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG---SNLLISNVTDDDSGTYTCVVTYKNENISASAEL  307 (403)
T ss_dssp             EEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETT---TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCc---cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEE
Confidence            44668999999999999999999999999877643 33333333   379999999999999999999998888887777


Q ss_pred             EecCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+...|.....  ......++.+.|+|...+.++.
T Consensus       308 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  342 (403)
T 3laf_A          308 TVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP  342 (403)
T ss_dssp             EEEEEEEEEECCCCEECCTTCCEEECCEEEEESCC
T ss_pred             EEECCCcEeecCcceEEecCCeEEEEEEEeeccCC
Confidence            76432222211  1223467789999999776553

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.56  E-value=1.9e-15  Score=81.06  Aligned_cols=84  Identities=24%  Similarity=0.461  Sum_probs=67.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCe-eEEEECCEEecc--CCcEEEE--ecCC--eEEEEEecCCCCCC-EEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNVYANPPAK-VEWFRDGTAITL--GGRIDMH--VSSE--KHSLLVRHIKDTDF-GNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~--~~~~~~~--~~~~--~~~l~i~~~~~~d~-g~y~C~~~~~~~   73 (126)
                      .+.+.+|+++.|.|.+.+.|.|. +.|++++..+..  ..++.+.  ....  ...|.|.++...|. |.|+|.+.|..|
T Consensus        22 ~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G  101 (122)
T 2cry_A           22 TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG  101 (122)
T ss_dssp             CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             eEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCC
Confidence            34678899999999999999987 999999887764  3455442  1112  45899999999998 999999999999


Q ss_pred             eeEEEEEEEecC
Q psy12132         74 SSQQFIQLSGIP   85 (126)
Q Consensus        74 ~~~~~~~l~~~~   85 (126)
                      ...+.+.|.+..
T Consensus       102 ~~~~~~~l~V~~  113 (122)
T 2cry_A          102 SDTEIIRLKEQG  113 (122)
T ss_dssp             EEEEEECCCCSC
T ss_pred             eEEEEEEEEECC
Confidence            988888777653

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.56  E-value=5.1e-13  Score=79.30  Aligned_cols=122  Identities=12%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             ceeccCCccEEEEEEeeecC-----CCeeEEEECC--E--E-ec---------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANP-----PAKVEWFRDG--T--A-IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~~--~--~-~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|.+.+.+     .+.+.|+++.  .  . +.         ...++..........|.|.++...|.|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   89 (247)
T 1svz_A           10 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   89 (247)
T ss_dssp             EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCE
Confidence            46788999999999998877     6889999842  1  1 11         134666555555678999999999999


Q ss_pred             EEEEEEecCCce-eEEEEEEEecCC------------CC-eecc--CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         63 NYMCQASNNLGS-SQQFIQLSGIPN------------IP-VFQK--SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        63 ~y~C~~~~~~~~-~~~~~~l~~~~~------------~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .|.|.+.+..+. ......|.+...            ++ ....  ......++.+.|.|...+..+......|||+
T Consensus        90 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A           90 IYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence            999999886442 112233443321            11 1221  1224568889999999766422223445554

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.56  E-value=1.8e-13  Score=79.43  Aligned_cols=112  Identities=15%  Similarity=0.257  Sum_probs=74.5

Q ss_pred             ceeccCCccEEEEEEeeecC---CCeeEEEECC--EEe------------ccCCcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP---PAKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      ++.+.+|+++.|.|.+.+.|   .+.+.|++++  ..+            ....++.....+....|.|.+++..|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (212)
T 1q0x_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY   88 (212)
T ss_dssp             EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEE
Confidence            46788999999999998877   4789999852  221            113466555555567899999999999999


Q ss_pred             EEEEecCCcee-EEEEEEEec--C-CCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         65 MCQASNNLGSS-QQFIQLSGI--P-NIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        65 ~C~~~~~~~~~-~~~~~l~~~--~-~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.+.+..+.. .....+.+.  . .+|.+.. ..  ....+..+.|+|.+.+..|
T Consensus        89 ~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p  144 (212)
T 1q0x_L           89 FCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYP  144 (212)
T ss_dssp             EEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeC
Confidence            99999876532 122234432  1 2333322 11  1235678999999977543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.56  E-value=4.5e-13  Score=81.68  Aligned_cols=113  Identities=18%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEec--CCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      +..+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...  .....|.|.++...|.|.|+|.+.+..+.....
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  195 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST  195 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEE
Confidence            35677899999999998 889999999999998887766655543  345679999999999999999998765555555


Q ss_pred             EEEEe------------------cCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         79 IQLSG------------------IPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        79 ~~l~~------------------~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +.+..                  ...+|.+..  ......++.+.|.|...+.++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~  251 (312)
T 2y23_A          196 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE  251 (312)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSS
T ss_pred             EEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCC
Confidence            44420                  011232211  1234578899999999877554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.55  E-value=1.3e-13  Score=82.18  Aligned_cols=112  Identities=14%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             ceeccCCccEEEEEEeeecC-----CCeeEEEECC--EEe------------ccCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANP-----PAKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|.+.+.+     .+.+.|++++  ..+            ....++.....+....|.|.++...|.|
T Consensus        47 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  126 (254)
T 2c1o_A           47 TLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLG  126 (254)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCE
Confidence            35678899999999998887     3889999732  211            1124666655556678999999999999


Q ss_pred             EEEEEEecCCceeE---EEEEEEecCCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         63 NYMCQASNNLGSSQ---QFIQLSGIPNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        63 ~y~C~~~~~~~~~~---~~~~l~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.+.+..+...   ..+.+.....+|.+.. ..  ....+..+.|+|.+.+..|
T Consensus       127 ~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p  183 (254)
T 2c1o_A          127 IYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP  183 (254)
T ss_dssp             EEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS
T ss_pred             EEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccC
Confidence            99999998754321   1233322222343332 11  1224568999999977433

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.55  E-value=2.4e-13  Score=83.13  Aligned_cols=108  Identities=21%  Similarity=0.352  Sum_probs=77.5

Q ss_pred             eeccCCccEEEEEEe------eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe-cCCcee
Q psy12132          3 SITAPDMRAEIICNV------YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGSS   75 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~------~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~   75 (126)
                      ..+..|+++.|.|.+      .+.|.+.+.|++++..+...........+   .|.|.++...|.|.|+|.+. +..|..
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCc---eEEEEeceehhCcEEEEEEEcCCCCcE
Confidence            346679999999998      78899999999999887543222222233   79999999999999999999 677765


Q ss_pred             ---EEEEEEEec----CCCCeeccCcc----eeCCCeeEEEEEEccCCc
Q psy12132         76 ---QQFIQLSGI----PNIPVFQKSSR----RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 ---~~~~~l~~~----~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~  113 (126)
                         ...+.+.+.    ..+|.+...+.    ...++.+.|.|...+.++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~  238 (315)
T 1itb_B          190 YPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS  238 (315)
T ss_dssp             EEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTT
T ss_pred             EEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCC
Confidence               334444333    34555544332    346788999999987654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.55  E-value=6e-14  Score=94.54  Aligned_cols=122  Identities=14%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeE-EE--ECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-eEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVE-WF--RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~-w~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~   77 (126)
                      ++.+..|+++.|.|.+.|.|.|.+. |+  +++..+.......+........|.|.++...|.|.|+|.+.|..|. ...
T Consensus       173 ~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~  252 (731)
T 2v5y_A          173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN  252 (731)
T ss_dssp             CEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECC
T ss_pred             ceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCccee
Confidence            4567889999999999999999988 77  5666554321111111112358999999999999999999999887 555


Q ss_pred             EEEEEec--CCCCeeccCcceeCCCeeEEEEEEc---cCCcceeEEEEEEEe
Q psy12132         78 FIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVD---TYSAIIQYLLKFRER  124 (126)
Q Consensus        78 ~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~r~~  124 (126)
                      ...+.+.  +.++.... ........+.|+|...   +..++..|.+.|+..
T Consensus       253 ~~~l~V~~~P~~~~~p~-~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~  303 (731)
T 2v5y_A          253 YAELVVKEPPVPIAPPQ-LASVGATYLWIQLNANSINGDGPIVAREVEYCTA  303 (731)
T ss_dssp             CEEEEEECCCCBSSCCE-EEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES
T ss_pred             eEEEEEecCCCCCCCcc-eeccCCceEEEEeCCcccCCCCccEEEEEEEEEC
Confidence            4555543  22222211 1234567889999873   447889999999875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.55  E-value=1.4e-13  Score=78.35  Aligned_cols=79  Identities=25%  Similarity=0.474  Sum_probs=66.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+....++.....  ...|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  185 (189)
T 2v5t_A          108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ  185 (189)
T ss_dssp             EETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETT--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecC--CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEE
Confidence            3567799999999999999999999999998876666654432  34799999999999999999999999888877776


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      +
T Consensus       186 V  186 (189)
T 2v5t_A          186 V  186 (189)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.55  E-value=2.1e-13  Score=88.68  Aligned_cols=113  Identities=13%  Similarity=0.154  Sum_probs=81.3

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEe--ccCCcEEEEe---cCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAI--TLGGRIDMHV---SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~--~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+.+|+++.|.|.+.+.|.+. +.|++++..+  ....+..+..   ......|.|.++...|.|.|+|.+.|..|...
T Consensus       221 ~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~  300 (524)
T 2ec8_A          221 YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN  300 (524)
T ss_dssp             EEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEE
T ss_pred             ceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceE
Confidence            3567899999999999998886 9999988763  2222222211   11245899999999999999999999999888


Q ss_pred             EEEEEEecCCCCeecc-----CcceeCCCeeEEEEEEccCCcce
Q psy12132         77 QFIQLSGIPNIPVFQK-----SSRRLGPDGYRLVWQVDTYSAII  115 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~  115 (126)
                      ..+.|.+...|.....     ......++.+.|.|...+.++..
T Consensus       301 ~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~  344 (524)
T 2ec8_A          301 VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE  344 (524)
T ss_dssp             EEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC
T ss_pred             EEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc
Confidence            8888877643332221     12245688899999997765533

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.55  E-value=1.7e-13  Score=90.33  Aligned_cols=82  Identities=21%  Similarity=0.400  Sum_probs=75.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++.+.|.|.|+|.+.|..|+..+.+.|
T Consensus       491 ~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l  570 (573)
T 3uto_A          491 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL  570 (573)
T ss_dssp             CEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEE
Confidence            35678899999999999999999999999999988888888877788899999999999999999999999999998888


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus       571 ~V  572 (573)
T 3uto_A          571 NV  572 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.55  E-value=1.1e-13  Score=85.12  Aligned_cols=112  Identities=18%  Similarity=0.284  Sum_probs=75.3

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCEEe----cc-----CCcEEEEec-----CCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGTAI----TL-----GGRIDMHVS-----SEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~----~~-----~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      ++.+.+|+++.|.|.+.+. |.+.+.|++++...    ..     ..++.....     .....|.|.++...|.|.|+|
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   91 (327)
T 2wng_A           12 SVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYC   91 (327)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEE
T ss_pred             ceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEE
Confidence            4678899999999999887 88899999986421    11     113332211     234579999999999999999


Q ss_pred             EEecCCcee-------EEEEEEEecCCCCeeccC-cceeCCCeeEEEEEEccCCc
Q psy12132         67 QASNNLGSS-------QQFIQLSGIPNIPVFQKS-SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        67 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.+..+..       ...+.+...+.+|.+..+ .....++.+.|.|...+.++
T Consensus        92 ~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~  146 (327)
T 2wng_A           92 VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSP  146 (327)
T ss_dssp             EEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBS
T ss_pred             EeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccC
Confidence            999875431       123344434444444321 22456888999999977654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.55  E-value=1.8e-13  Score=71.83  Aligned_cols=81  Identities=21%  Similarity=0.338  Sum_probs=58.6

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECCEEeccCCcEEEEec-C-------CeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDGTAITLGGRIDMHVS-S-------EKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~~~~~~~~~~~~~~~-~-------~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++.+..|+++.|.|.+.+.+  .+.+.|++++..+........... .       ....|.|.++...|.|.|+|.+.|.
T Consensus        19 ~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   98 (112)
T 3so5_A           19 TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNH   98 (112)
T ss_dssp             CEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeC
Confidence            35678899999999998654  579999999987754321111110 0       1358999999999999999999998


Q ss_pred             Ccee-EEEEEEE
Q psy12132         72 LGSS-QQFIQLS   82 (126)
Q Consensus        72 ~~~~-~~~~~l~   82 (126)
                      .|.. ...+.|.
T Consensus        99 ~g~~~s~~~~l~  110 (112)
T 3so5_A           99 FGSSYSVXAXLT  110 (112)
T ss_dssp             TEEEECCCEEEE
T ss_pred             CCcEEEeEEEEE
Confidence            8863 3555544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.55  E-value=3.1e-14  Score=82.60  Aligned_cols=77  Identities=13%  Similarity=0.117  Sum_probs=57.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEec----cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAIT----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|++++..+.    ...++....++....+.+.++...|.|.|+|.+.|..|+....
T Consensus       116 ~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          116 SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             CCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             EEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            456789999999999999999999988654332    2345555556655567778999999999999999999988764


Q ss_pred             E
Q psy12132         79 I   79 (126)
Q Consensus        79 ~   79 (126)
                      +
T Consensus       196 ~  196 (203)
T 4fa8_A          196 Y  196 (203)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.55  E-value=7.7e-14  Score=87.69  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=68.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+....++.+. .+   .|.|.++...|.|.|+|.+.|..|...+...|
T Consensus       304 ~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~-~~---~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L  379 (384)
T 3kld_A          304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-QG---TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL  379 (384)
T ss_dssp             CEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE-TT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe-CC---EEEEeecChhhCEEEEEEEEeCCceEEeceEE
Confidence            356778999999999999999999999999988766666543 33   79999999999999999999999999888888


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus       380 ~V~  382 (384)
T 3kld_A          380 SVI  382 (384)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.55  E-value=1.2e-13  Score=78.12  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=70.3

Q ss_pred             eeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.+.+.+ .+.|++++..+...          ...|.|.++...|.|.|+|.+.+..++....+.+
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V   83 (176)
T 1f2q_A           14 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEV   83 (176)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEE
T ss_pred             cceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCCccccccEEEEE
Confidence            467889999999999888775 69999999876532          2379999999999999999999876555544444


Q ss_pred             EecCCCCeecc-CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .  ..+..... ......++.+.|.|...+..+.
T Consensus        84 ~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  115 (176)
T 1f2q_A           84 F--SDWLLLQASAEVVMEGQPLFLRCHGWRNWDV  115 (176)
T ss_dssp             E--CSSEEEEESCSEEETTSCEEEEEEEGGGCCE
T ss_pred             e--CcceeecCCcceeeCCCCEEEEEEecCCCCc
Confidence            4  22222211 2234578899999999655553

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.54  E-value=1.7e-13  Score=87.53  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=79.2

Q ss_pred             eeccCCccEEEEEEeeecCCC---eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE---
Q psy12132          3 SITAPDMRAEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ---   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~---   76 (126)
                      ..+.+|+++.|.|.+.+.|++   .+.|++++..+......   .......|.|..+...|.|.|+|.+.|..|...   
T Consensus        96 ~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  172 (450)
T 1z7z_I           96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL  172 (450)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred             ceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceE
Confidence            457789999999999998888   89999999877532211   122234899999999999999999998765422   


Q ss_pred             -----EEEEEEec---CCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         77 -----QFIQLSGI---PNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        77 -----~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                           ....+.+.   ..+|.+........++.+.|.|...+..|.....+.|.+
T Consensus       173 ~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~  227 (450)
T 1z7z_I          173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (450)
T ss_dssp             EEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEE
T ss_pred             EeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeC
Confidence                 22223322   223333333445678899999999887442222444443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.54  E-value=1.5e-13  Score=86.20  Aligned_cols=118  Identities=18%  Similarity=0.268  Sum_probs=78.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE-CCEEeccCCcE-EEEecCCeEEEEEecCCCCC------CEEEEEEEecCCce
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRI-DMHVSSEKHSLLVRHIKDTD------FGNYMCQASNNLGS   74 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d------~g~y~C~~~~~~~~   74 (126)
                      +.+.+|+.+.|.|.+.|.|.+.+.|++ ++..+....+. ....++   .|.|.++...|      .|.|+|.+.|..|.
T Consensus        14 ~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~---~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~   90 (388)
T 2v5m_A           14 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGS   90 (388)
T ss_dssp             EEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTT---EEEECCCCGGGCCHHHHEEEEEEEEEETTEE
T ss_pred             EEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCc---eEEecccChhhccccccCceEEEEEEccCCe
Confidence            446689999999999999999999999 77766543322 222333   79999999887      99999999998875


Q ss_pred             e-EEEEEEEecCCCCe--eccCcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         75 S-QQFIQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        75 ~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      . ...+.+.+...+..  .........++.+.|.|...+..+-....+.|.+
T Consensus        91 ~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~  142 (388)
T 2v5m_A           91 IISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT  142 (388)
T ss_dssp             EECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred             EEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence            4 33444444322221  1222334578889999998765432223445544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.54  E-value=5e-13  Score=87.85  Aligned_cols=112  Identities=13%  Similarity=0.142  Sum_probs=79.2

Q ss_pred             ceeccCCccEEEEEEeeecCCC---eeEEEECCEEe------c--------cCCcEEEEe--cCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA---KVEWFRDGTAI------T--------LGGRIDMHV--SSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~------~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~g   62 (126)
                      ++.+.+|+++.|.|.+.+.+.+   .+.|++++..+      .        ...++.+..  ..+...|.|.++...|.|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G   88 (585)
T 2ocw_A            9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   88 (585)
T ss_pred             eeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCE
Confidence            4678899999999999877654   79999986421      1        123444433  233467999999999999


Q ss_pred             EEEEEEecCCceeEEEEEEEecCCCCeecc--CcceeCCCeeEEEEEEccCCc
Q psy12132         63 NYMCQASNNLGSSQQFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        63 ~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|+|.+.+..+.....+.|.+...|.....  ......++.+.|.|...+..+
T Consensus        89 ~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~  141 (585)
T 2ocw_A           89 RYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA  141 (585)
T ss_pred             EEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCC
Confidence            999999988777777777776544332221  222457889999999976543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.54  E-value=1.6e-13  Score=83.98  Aligned_cols=80  Identities=18%  Similarity=0.283  Sum_probs=64.3

Q ss_pred             eccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      .+..|+.+.|.|.+.|.|.| .+.|++++..+....   ...+.   .|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       228 ~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  301 (313)
T 4fqp_A          228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQGA---QLLIRPVDKPINTTLICNVTNALGARQAELTVQ  301 (313)
T ss_dssp             EETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETT---EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEE
T ss_pred             eecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeCC---EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEE
Confidence            34568899999999999998 699999987764321   22222   799999999999999999999999999999888


Q ss_pred             ecCCCCe
Q psy12132         83 GIPNIPV   89 (126)
Q Consensus        83 ~~~~~~~   89 (126)
                      |...||-
T Consensus       302 V~~~PP~  308 (313)
T 4fqp_A          302 VKEGPPH  308 (313)
T ss_dssp             EECCC--
T ss_pred             EEeCCCC
Confidence            8766553

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.54  E-value=3.7e-13  Score=80.84  Aligned_cols=123  Identities=14%  Similarity=0.179  Sum_probs=78.4

Q ss_pred             ceeccCCccEEEEEEeeecC------CCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP------PAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p------~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~   61 (126)
                      .+.+.+|+++.|.|.+.+.+      .+.+.|+++  +.   .+.         ...++..........|.|.+++..|.
T Consensus        14 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   93 (264)
T 2gjj_A           14 SLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDL   93 (264)
T ss_dssp             EEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHC
Confidence            35688999999999998777      578999984  22   111         13566655445567899999999999


Q ss_pred             EEEEEEEecCCce-eEEEEEEEecCCC------------------Ce-ecc--CcceeCCCeeEEEEEEccCCcceeEEE
Q psy12132         62 GNYMCQASNNLGS-SQQFIQLSGIPNI------------------PV-FQK--SSRRLGPDGYRLVWQVDTYSAIIQYLL  119 (126)
Q Consensus        62 g~y~C~~~~~~~~-~~~~~~l~~~~~~------------------~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~  119 (126)
                      |.|.|.+.+..+. ......|.|...+                  .+ +..  ......++.+.|.|...+.++......
T Consensus        94 G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  173 (264)
T 2gjj_A           94 AVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFIN  173 (264)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             EEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEE
Confidence            9999999876432 1112234433221                  11 111  122456888999999976643222345


Q ss_pred             EEEEe
Q psy12132        120 KFRER  124 (126)
Q Consensus       120 ~~r~~  124 (126)
                      |||+.
T Consensus       174 W~r~~  178 (264)
T 2gjj_A          174 WVKKN  178 (264)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            56653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=84.45  Aligned_cols=110  Identities=19%  Similarity=0.194  Sum_probs=83.0

Q ss_pred             ccCCccEEEEEEeee----------cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          5 TAPDMRAEIICNVYA----------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~----------~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      +..|+.+.|.|.+.+          .|.+.+.|++++..+....++.....+....|.|.++...|.|.|+|.+.|..|.
T Consensus       110 ~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  189 (317)
T 2y25_A          110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG  189 (317)
T ss_dssp             HTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             cccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce
Confidence            456778888888776          6889999999998887777777666666678999999999999999999999888


Q ss_pred             eEEEEEEEecC-------------------CCCeecc----CcceeCCCeeEEEEEEccCCcc
Q psy12132         75 SQQFIQLSGIP-------------------NIPVFQK----SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        75 ~~~~~~l~~~~-------------------~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      ....+.+.+..                   ..|.+..    ......++.+.|.|...+.++.
T Consensus       190 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  252 (317)
T 2y25_A          190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP  252 (317)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCC
T ss_pred             EEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCC
Confidence            88877776421                   1122221    1223567889999999877553

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.53  E-value=3.2e-14  Score=89.33  Aligned_cols=109  Identities=15%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEECCEEeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE---
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ---   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~---   76 (126)
                      ++.+.+|+++.|.|.+.+ .|.+.+.|++++..+.... ++...  .....|.|.++...|.|.|+|.+.+..|...   
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~   92 (395)
T 1bih_A           15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV   92 (395)
T ss_dssp             EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC--TTSCCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             ceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEe--cCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEE
Confidence            356788999999999998 7889999999998776543 22222  2334799999999999999999999877653   


Q ss_pred             EEEEEEecCCCCeeccCcceeCCCeeEEEEEE-ccCC
Q psy12132         77 QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV-DTYS  112 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  112 (126)
                      ..+.+...+.++..........++.+.|.|.. .+.+
T Consensus        93 ~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p  129 (395)
T 1bih_A           93 ISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP  129 (395)
T ss_dssp             EEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEES
T ss_pred             EEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCC
Confidence            33333333333333223334578889999986 4444

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=5.4e-13  Score=75.79  Aligned_cols=82  Identities=21%  Similarity=0.401  Sum_probs=67.0

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEE---CC-EEecc--CCcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCce
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFR---DG-TAITL--GGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGS   74 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~---~~-~~~~~--~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~   74 (126)
                      ..+.+|+.+.|.|.+.+.| .+.+.|++   ++ ..+..  ..++.+...+....|.|.++. ..|.|.|+|.+.|..|.
T Consensus        93 ~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~  172 (184)
T 3b5h_A           93 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS  172 (184)
T ss_dssp             EEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEE
T ss_pred             cEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCc
Confidence            4577899999999999999 79999999   44 33432  256666666666799999999 89999999999999999


Q ss_pred             eEEEEEEEec
Q psy12132         75 SQQFIQLSGI   84 (126)
Q Consensus        75 ~~~~~~l~~~   84 (126)
                      ....+.|.|.
T Consensus       173 ~~~~~~l~V~  182 (184)
T 3b5h_A          173 DQAIITLRVR  182 (184)
T ss_dssp             EEEEEEEEEC
T ss_pred             ceEEEEEEEe
Confidence            8888877764

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=83.49  Aligned_cols=81  Identities=23%  Similarity=0.450  Sum_probs=67.8

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      .+.+|+.+.|.|.+.+.|.|.+.|++++..+....++....  ....|.|.++...|.|.|+|.+.|..|.....+.+.+
T Consensus       205 ~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  282 (291)
T 2wim_A          205 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  282 (291)
T ss_dssp             CSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECS--TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             eecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcC--CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEE
Confidence            46679999999999999999999999999887766665432  2358999999999999999999999999999998887


Q ss_pred             cCC
Q psy12132         84 IPN   86 (126)
Q Consensus        84 ~~~   86 (126)
                      ...
T Consensus       283 ~~~  285 (291)
T 2wim_A          283 FVQ  285 (291)
T ss_dssp             ---
T ss_pred             EEe
Confidence            543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.53  E-value=4.2e-13  Score=79.55  Aligned_cols=121  Identities=15%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEE----------------CCEEeccC---CcEEEEe-cCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFR----------------DGTAITLG---GRIDMHV-SSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~----------------~~~~~~~~---~~~~~~~-~~~~~~l~i~~~~~~d~   61 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++                ++......   .++.+.. ......|.|.+++..|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           10 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence            3567899999999999988899999998                22222111   3555443 23456899999999999


Q ss_pred             EEEEEEEecCCc----eeEEEEEEEecC-----CCCeec-cCcc---eeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         62 GNYMCQASNNLG----SSQQFIQLSGIP-----NIPVFQ-KSSR---RLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        62 g~y~C~~~~~~~----~~~~~~~l~~~~-----~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      |.|.|.+.+..+    .......+.+..     .+|.+. ..+.   ...+..+.|+|.+.+.+|.. ..+.|.+
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~-~~v~W~k  163 (246)
T 4dzb_B           90 SFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH-VELSWWV  163 (246)
T ss_dssp             EEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC-EEEEEEE
T ss_pred             EEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCc-eEEEEEE
Confidence            999999986532    111222344332     233322 2111   12367899999997754422 2344443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.53  E-value=3.7e-14  Score=89.23  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=73.9

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEe----cCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVR----HIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~----~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +.+.+|+++.|.|.+.+.|.+.+.|++++..+...  .++....  ....|.+.    ++...|.|.|+|.+.|..|...
T Consensus        27 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~--~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~  104 (404)
T 3p3y_A           27 HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR--RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL  104 (404)
T ss_dssp             CEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCS--SSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEE
T ss_pred             EEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEec--CCceEEEEeccCCCCccCCEEEEEEEEcCCCeEe
Confidence            46778999999999999999999999999876532  2222211  12245553    7788999999999999887763


Q ss_pred             -EEEEEEecCCCCeecc---CcceeCCCeeEEEEEEccC
Q psy12132         77 -QFIQLSGIPNIPVFQK---SSRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        77 -~~~~l~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~  111 (126)
                       ..+.+.+...+.....   ......++.+.|.|.....
T Consensus       105 s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~  143 (404)
T 3p3y_A          105 SNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG  143 (404)
T ss_dssp             EEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCC
T ss_pred             eeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCC
Confidence             5566666433332221   2334578889999988333

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.53  E-value=5.9e-14  Score=74.60  Aligned_cols=76  Identities=22%  Similarity=0.398  Sum_probs=55.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC-----cEEEEecCCeEEEEE--ecCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-----RIDMHVSSEKHSLLV--RHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-----~~~~~~~~~~~~l~i--~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+....     ......++....+.+  .++...|.|.|+|.+.|..|.
T Consensus        18 ~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~   97 (117)
T 2v9t_A           18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE   97 (117)
T ss_dssp             CEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEE
T ss_pred             CEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccc
Confidence            3567889999999999999999999999998776432     222223332222222  255789999999999999887


Q ss_pred             eEE
Q psy12132         75 SQQ   77 (126)
Q Consensus        75 ~~~   77 (126)
                      ...
T Consensus        98 ~~s  100 (117)
T 2v9t_A           98 AVS  100 (117)
T ss_dssp             EEC
T ss_pred             eEe
Confidence            653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.53  E-value=6.8e-13  Score=76.65  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=74.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEecc-------------------CCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------------------GGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|+++.|.|...+.+.+.+.|++++.....                   ..+..+..+   ..|.|.++...|.|.
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~i~~v~~~D~G~   85 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN---GSLLFQMITMKDMGV   85 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT---SCEEECSCCGGGCEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC---CeEEEccccccCCeE
Confidence            5678899999999988888889999987432110                   123333222   379999999999999


Q ss_pred             EEEEEecCC-ceeEEEEEEEecCC--CCeecc-CcceeCCCeeEEEEEEccCCc
Q psy12132         64 YMCQASNNL-GSSQQFIQLSGIPN--IPVFQK-SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        64 y~C~~~~~~-~~~~~~~~l~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      |+|.+.+.. +.....+.|.+...  .|.+.. ......++.+.|.|...+.++
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp  139 (208)
T 3r4d_A           86 YTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGA  139 (208)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTC
T ss_pred             EEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCC
Confidence            999999874 55556666665432  233322 222456788999999977554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.53  E-value=3.7e-13  Score=80.19  Aligned_cols=113  Identities=16%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             eeccCCccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...     ..   ...|.|.++...|.|.|+|.+.+..+.....+.+
T Consensus        92 ~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~~---~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l  163 (262)
T 3rjd_A           92 RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HW---NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISV  163 (262)
T ss_dssp             SEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EE---CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEE
T ss_pred             eEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----CC---CCeEEEEECChhhCEEEEEEEeCCCCccccceEE
Confidence            346689999999999 67778899999998876421     11   1369999999999999999999988777776677


Q ss_pred             EecC--CCCeeccCc--ceeCCCeeEEEEEEccCC--cceeEEEEEEE
Q psy12132         82 SGIP--NIPVFQKSS--RRLGPDGYRLVWQVDTYS--AIIQYLLKFRE  123 (126)
Q Consensus        82 ~~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~--~~~~~~~~~r~  123 (126)
                      .+..  .+|.+....  ....++.+.|+|...+.+  +...+.+.|.+
T Consensus       164 ~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~  211 (262)
T 3rjd_A          164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYM  211 (262)
T ss_dssp             EEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEE
T ss_pred             EeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEe
Confidence            6653  344443322  245688999999997775  44455555544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=2.7e-14  Score=88.01  Aligned_cols=111  Identities=20%  Similarity=0.377  Sum_probs=80.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+....+.. .........|.|.++...|.|.|+|.+.|..|.....+.+
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  212 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL  212 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEE
Confidence            346679999999999999999999999988765443221 1112233489999999999999999999998888777777


Q ss_pred             EecCC---CCeecc----CcceeCCCeeEEEEEEccCCc
Q psy12132         82 SGIPN---IPVFQK----SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~~~---~~~~~~----~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+...   +|.+..    ......++.+.|.|...+.++
T Consensus       213 ~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~  251 (334)
T 1ry7_B          213 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ  251 (334)
T ss_dssp             EEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSC
T ss_pred             EEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCC
Confidence            76432   233221    122356788999999877654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.53  E-value=1.6e-13  Score=86.31  Aligned_cols=80  Identities=25%  Similarity=0.386  Sum_probs=69.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+....++......   .|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       322 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  398 (403)
T 3laf_A          322 LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI  398 (403)
T ss_dssp             EECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCc---cEEEeccccccCEEEEEEEEcCCceEEEEEEEE
Confidence            45678999999999999999999999999988766666555443   799999999999999999999999999998888


Q ss_pred             ecC
Q psy12132         83 GIP   85 (126)
Q Consensus        83 ~~~   85 (126)
                      +..
T Consensus       399 V~~  401 (403)
T 3laf_A          399 VPK  401 (403)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            753

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.53  E-value=2.7e-13  Score=74.69  Aligned_cols=82  Identities=13%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEE---------CCEEeccCCcEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFR---------DGTAITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~---------~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ++.+..|+++.|.|.+.+.+.+.+.|++         ++..+ ...++.... ......|.|.++...|.|.|+|.+.+.
T Consensus        47 ~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~-~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  125 (145)
T 1z9m_A           47 DETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRAL-RDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM  125 (145)
T ss_dssp             CEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECS-CCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             eEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceec-ccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC
Confidence            4678899999999999988888999994         32222 234554332 223568999999999999999999998


Q ss_pred             CceeEEEEEEEecC
Q psy12132         72 LGSSQQFIQLSGIP   85 (126)
Q Consensus        72 ~~~~~~~~~l~~~~   85 (126)
                       +.....+.|.|..
T Consensus       126 -~~~~~~~~L~V~~  138 (145)
T 1z9m_A          126 -PVRTAKSLVTVLG  138 (145)
T ss_dssp             -SCEEEEEEEEEEC
T ss_pred             -CCceEEEEEEEEe
Confidence             7777777777653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.52  E-value=4.7e-13  Score=76.33  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=68.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce--eEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l   81 (126)
                      .+.+|+++.|.|.+.+ +.+.+.|++++...       ..   ....|.|.++...|.|.|+|.+.|..|.  ....+.+
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~~---~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   86 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------YQ---DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLEL   86 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTCC-------EE---SSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCccc-------cC---cccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEE
Confidence            5678999999999986 78899999987541       11   1237999999999999999999987653  2334445


Q ss_pred             Eec--CCCCeeccC--cceeCCCeeEEEEEEccCC
Q psy12132         82 SGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        82 ~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      .+.  ..+|.+...  .....++.+.|.|...+.+
T Consensus        87 ~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~  121 (184)
T 2gi7_A           87 VATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF  121 (184)
T ss_dssp             EEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC
T ss_pred             EecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC
Confidence            442  233433321  2234688999999976544

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.52  E-value=9e-13  Score=74.89  Aligned_cols=100  Identities=13%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ..+.+|+++.|.|.+.+.+.|  .+.|++++..+.......     ....|.+.  ...|.|.|+|.+.+.. ..  ...
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~-----~~~~l~i~--~~~d~G~Y~C~~~n~~-~~--~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVD--SDDQWGEYSCVFLPEP-MG--TAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----SEEEEEEC--GGGCCEEEEEEEESTT-SC--EEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC-----CcEEEEEe--chhhCeEEEEEEECCc-Cc--EEE
Confidence            456789999999999887777  899999998776443211     12356555  5789999999999832 23  334


Q ss_pred             EEecCCCCeecc--CcceeCCCeeEEEEEEccCC
Q psy12132         81 LSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        81 l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~  112 (126)
                      +.+...|.....  ......++.+.|.|...+.+
T Consensus        78 l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p  111 (184)
T 3b5h_A           78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP  111 (184)
T ss_dssp             EEECCSCCCEESCSEEEECTTSCEEEEEECCCSS
T ss_pred             EEEecCCceeecCCCcEEcCCCcEEEEEEECCCC
Confidence            444322222111  12245688899999998776

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.52  E-value=4.8e-12  Score=75.52  Aligned_cols=121  Identities=15%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC----E-Ee-------------ccCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG----T-AI-------------TLGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~----~-~~-------------~~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      ++.+.+|+++.|.|.+.+.  +.+.+.|++..    . .+             ....++.+..+  .....|.|.+++..
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   96 (257)
T 3gkz_A           17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE   96 (257)
T ss_dssp             CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence            3567889999999999884  46789999832    1 11             01235555432  23568999999999


Q ss_pred             CCEEEEEEEecCC----ceeEEEEEEEecCC-------------CCeeccCc---ceeCCCeeEEEEEEccCCcceeEEE
Q psy12132         60 DFGNYMCQASNNL----GSSQQFIQLSGIPN-------------IPVFQKSS---RRLGPDGYRLVWQVDTYSAIIQYLL  119 (126)
Q Consensus        60 d~g~y~C~~~~~~----~~~~~~~~l~~~~~-------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~  119 (126)
                      |.|.|.|.+.+..    ........|.+...             ++.+...+   ....++.+.|.|...+..+.. ...
T Consensus        97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~v~  175 (257)
T 3gkz_A           97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS-HLY  175 (257)
T ss_dssp             GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG-GEE
T ss_pred             hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce-EEE
Confidence            9999999999862    11222334444322             23333222   245688999999997754431 234


Q ss_pred             EEEE
Q psy12132        120 KFRE  123 (126)
Q Consensus       120 ~~r~  123 (126)
                      |||+
T Consensus       176 W~k~  179 (257)
T 3gkz_A          176 WYQQ  179 (257)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.52  E-value=6e-14  Score=81.01  Aligned_cols=108  Identities=17%  Similarity=0.249  Sum_probs=73.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEe------------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++....    ..|.|.++...|.|.|+|.+.
T Consensus        13 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d~G~Y~C~~~   88 (209)
T 1nbq_A           13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTREDTGTYTCMVS   88 (209)
T ss_dssp             BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTSCSEEEEEEE
T ss_pred             ceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHHCcEEEEEEe
Confidence            356778999999999998889999999865432            1123333332    379999999999999999999


Q ss_pred             cCCc--eeEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEE-ccCCc
Q psy12132         70 NNLG--SSQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQV-DTYSA  113 (126)
Q Consensus        70 ~~~~--~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  113 (126)
                      +..|  .....+.+.+.  +..+..........++.+.|.|.+ .+.++
T Consensus        89 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  137 (209)
T 1nbq_A           89 EEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP  137 (209)
T ss_dssp             ETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSC
T ss_pred             cCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCC
Confidence            8754  33344444443  222222223334578889999986 55544

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.52  E-value=3.3e-13  Score=78.42  Aligned_cols=74  Identities=26%  Similarity=0.534  Sum_probs=60.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC---CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+..|+++.|.|.+.+.|.+.+.|++++..+...   .++..........|.|.++...|.|.|+|.+.|..|...
T Consensus       118 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  194 (212)
T 2yd6_A          118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY  194 (212)
T ss_dssp             EEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccc
Confidence            34667999999999999999999999999887643   455555444567899999999999999999999988764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.52  E-value=3.4e-13  Score=80.32  Aligned_cols=112  Identities=15%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             ceeccCCccEEEEEEeeecC-----CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANP-----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|.+.+.+     .+.+.|++++  .   .+.         ...++.....+....|.|.+++..|.|
T Consensus        43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  122 (252)
T 3bkj_L           43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLG  122 (252)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCE
Confidence            35688999999999998877     5789999853  1   111         124666555556678999999999999


Q ss_pred             EEEEEEecCCcee-EEEEEEEec--CCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         63 NYMCQASNNLGSS-QQFIQLSGI--PNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        63 ~y~C~~~~~~~~~-~~~~~l~~~--~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.+.+..+.. .....+.+.  ..+|.+.. ..  ....++.+.|+|.+.+..|
T Consensus       123 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p  179 (252)
T 3bkj_L          123 VYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP  179 (252)
T ss_dssp             EEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBS
T ss_pred             EEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeC
Confidence            9999998865422 112234432  22343322 11  1224668999999977543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.52  E-value=1.3e-12  Score=77.92  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECC--E---Ee--------------ccCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AI--------------TLGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~--------------~~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+.+.+  .+.+.|++..  .   .+              ....++.+..+  .....|.|.+++..
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (256)
T 3umt_A           12 ELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSE   91 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcc
Confidence            5678899999999998765  6789998732  1   11              01245555433  23567999999999


Q ss_pred             CCEEEEEEEecC----CceeEEEEEEEecCC---------------CCeeccC---cceeCCCeeEEEEEEccCCcceeE
Q psy12132         60 DFGNYMCQASNN----LGSSQQFIQLSGIPN---------------IPVFQKS---SRRLGPDGYRLVWQVDTYSAIIQY  117 (126)
Q Consensus        60 d~g~y~C~~~~~----~~~~~~~~~l~~~~~---------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~  117 (126)
                      |.|.|.|.+.+.    .+.......|.+...               ++.+...   .....++.+.|.|...+.++.  .
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~  169 (256)
T 3umt_A           92 DSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS--N  169 (256)
T ss_dssp             GCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT--C
T ss_pred             cCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc--E
Confidence            999999999886    222233344554431               3333322   224568899999999776443  2


Q ss_pred             EEEEEE
Q psy12132        118 LLKFRE  123 (126)
Q Consensus       118 ~~~~r~  123 (126)
                      ..|||+
T Consensus       170 v~W~k~  175 (256)
T 3umt_A          170 LNWLQQ  175 (256)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            445664

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.52  E-value=2.6e-13  Score=83.30  Aligned_cols=121  Identities=14%  Similarity=0.088  Sum_probs=80.3

Q ss_pred             ceeccCCccEEEEEEeeec-----CCCeeEEEECCEEeccCCcEEEEecCC-eEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          2 HSITAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-----p~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +..+..|++++|.|.+.+.     |.+.+.|.+++..+.. .+.....++. ...|.|.+++..|.|.|.|.+.+..+..
T Consensus         9 ~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~   87 (313)
T 2d9q_B            9 APIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQI   87 (313)
T ss_dssp             CSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEE
T ss_pred             CcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCCcee
Confidence            3567899999999999886     5689999999887643 2222222222 2589999999999999999887654444


Q ss_pred             EEEEEEEec--CCCCeeccCccee-CCCeeEEEEEEccC-CcceeEEEEEEEe
Q psy12132         76 QQFIQLSGI--PNIPVFQKSSRRL-GPDGYRLVWQVDTY-SAIIQYLLKFRER  124 (126)
Q Consensus        76 ~~~~~l~~~--~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~r~~  124 (126)
                      .+.+.|.+.  +.+|.... -... ....+.++|.+... .....|.+.|+..
T Consensus        88 ~~~~~l~v~~~P~~P~~l~-c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~  139 (313)
T 2d9q_B           88 LDQVELRAGYPPAIPHNLS-CLMNLTTSSLICQWEPGPETHLPTSFTLKSFKS  139 (313)
T ss_dssp             EEEEEEEECCCCCCCEEEE-EEEETTTTEEEEEEECCSCCSSCCEEEEEEEEC
T ss_pred             EEEEEEccCCCCCCCccce-eeECCCCccEEEEecCCCCCCCceeEEEEEEec
Confidence            445555543  33343332 1122 24689999988432 2245699999864

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.52  E-value=1.4e-12  Score=77.68  Aligned_cols=112  Identities=10%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEE---e--------------ccCCcEEEEecC--CeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTA---I--------------TLGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~---~--------------~~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|++.  +..   +              ....++....+.  ....|.|.+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   89 (253)
T 3uzq_A           10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTS   89 (253)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCc
Confidence            46788999999999998744  678999982  111   1              012455554432  356799999999


Q ss_pred             CCCEEEEEEEecCCcee-EEEEEEEecC--------------CCCeeccC---cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGSS-QQFIQLSGIP--------------NIPVFQKS---SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~-~~~~~l~~~~--------------~~~~~~~~---~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|+|.|.|.+.+..+.. .....+.+..              .++.+...   .....++.+.|.|...+.++
T Consensus        90 ~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  162 (253)
T 3uzq_A           90 GDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD  162 (253)
T ss_dssp             GGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE
T ss_pred             ccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc
Confidence            99999999999854432 2233444432              12333222   22457889999999977544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.52  E-value=1.5e-12  Score=78.25  Aligned_cols=123  Identities=12%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             ceeccCCccEEEEEEeeecC-----CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANP-----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|.+.+.+     .+.+.|+++.  .   .+.         ...++..........|.|.+++..|.|
T Consensus        24 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  103 (268)
T 1x9q_A           24 SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLG  103 (268)
T ss_dssp             EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCE
Confidence            35678999999999998776     4789999842  1   111         134666554455678999999999999


Q ss_pred             EEEEEEecCCce-eEEEEEEEecCC--------CC---------------eec--cCcceeCCCeeEEEEEEccCCccee
Q psy12132         63 NYMCQASNNLGS-SQQFIQLSGIPN--------IP---------------VFQ--KSSRRLGPDGYRLVWQVDTYSAIIQ  116 (126)
Q Consensus        63 ~y~C~~~~~~~~-~~~~~~l~~~~~--------~~---------------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~  116 (126)
                      .|.|.+.+..+. ......|.|...        +|               .+.  .......++.+.|+|...+..+...
T Consensus       104 ~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  183 (268)
T 1x9q_A          104 VYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHY  183 (268)
T ss_dssp             EEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGC
T ss_pred             EEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccccc
Confidence            999999886432 111223333211        11               011  1223456889999999976543222


Q ss_pred             EEEEEEEe
Q psy12132        117 YLLKFRER  124 (126)
Q Consensus       117 ~~~~~r~~  124 (126)
                      ...|||+.
T Consensus       184 ~v~W~k~~  191 (268)
T 1x9q_A          184 WMNWVRQS  191 (268)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            34455543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.52  E-value=1.7e-13  Score=81.18  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=74.9

Q ss_pred             ceeccCCccEEEEEEeee---cCCCeeEEEECCEEe-----c-------------------------cCCcEEEEecCCe
Q psy12132          2 HSITAPDMRAEIICNVYA---NPPAKVEWFRDGTAI-----T-------------------------LGGRIDMHVSSEK   48 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~---~p~~~~~w~~~~~~~-----~-------------------------~~~~~~~~~~~~~   48 (126)
                      ++.+.+|+++.|.|.+.+   .+.+.+.|++++...     .                         ...+..+... ..
T Consensus        11 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~   89 (250)
T 2fbo_J           11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL-AA   89 (250)
T ss_dssp             EEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT-TS
T ss_pred             ceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC-Cc
Confidence            467889999999999987   788899999976321     0                         1122222111 13


Q ss_pred             EEEEEecCCCCCCEEEEEEEecCCcee-----EEEEEEEecCC--CCeecc-Cc---ceeCCCeeEEEEEEccCCcc
Q psy12132         49 HSLLVRHIKDTDFGNYMCQASNNLGSS-----QQFIQLSGIPN--IPVFQK-SS---RRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        49 ~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~~~~~--~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~  114 (126)
                      ..|.|.++...|.|.|+|.+.+..+..     ...+.|.+...  ++.... ..   ....++.+.|.|...+.++.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence            479999999999999999999876532     44666665432  332222 11   12348889999999775443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.52  E-value=2.9e-13  Score=78.80  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EEe---c---------cCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TAI---T---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|++++  ..+   .         ...++.....+....|.|.+++..|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (216)
T 2xzc_L            9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (216)
T ss_dssp             EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEE
Confidence            46788999999999964333  5789999843  111   0         124666555556678999999999999999


Q ss_pred             EEEecCCc--eeEEEEEEEec--CCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         66 CQASNNLG--SSQQFIQLSGI--PNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        66 C~~~~~~~--~~~~~~~l~~~--~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.+.+..+  .......+.+.  ..+|.+.. .+  ....++.+.|+|.+.+..|
T Consensus        89 C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P  143 (216)
T 2xzc_L           89 CGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYP  143 (216)
T ss_dssp             EEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS
T ss_pred             EEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcC
Confidence            99998765  11222233332  23343332 11  1124678999999977433

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.51  E-value=1.9e-13  Score=85.58  Aligned_cols=106  Identities=14%  Similarity=0.153  Sum_probs=78.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+..  ..    ......|.|.++...|.|.|+|.+.|..|.....+.+.
T Consensus       217 ~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  290 (382)
T 1cs6_A          217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KW----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII  290 (382)
T ss_dssp             EEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--CC----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCeEEEEEEEccCCCCEEEEEECCccccc--EE----ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            4567899999999999999999999998765432  11    11234799999999999999999999988887777777


Q ss_pred             ecCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         83 GIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +...|.....  ......++.+.|.|...+.++.
T Consensus       291 V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  324 (382)
T 1cs6_A          291 IHAQPDWLDVITDTEADIGSDLRWSCVASGKPRP  324 (382)
T ss_dssp             EEEEEEEEECCCCEEEETTCCEEEECEEEEESCC
T ss_pred             EecCCCcccCCCccEEcCCCeEEEEEEeeeecCC
Confidence            6533322221  2224568889999999776553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.51  E-value=1.4e-13  Score=80.19  Aligned_cols=106  Identities=15%  Similarity=0.039  Sum_probs=69.5

Q ss_pred             ceeccCC--ccEEEEEEeeecCCCeeEEEEC---CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          2 HSITAPD--MRAEIICNVYANPPAKVEWFRD---GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         2 ~~~~~~g--~~~~l~C~~~~~p~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      .+.+.+|  +++.|.|.+.+ |.+.+.|++.   +..+....++......   .|.|.++...|.|.|+|.+.+..+...
T Consensus        16 ~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           16 VVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             EEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             EEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECCeeEE
Confidence            3567889  99999999975 7789999884   5555544444433333   699999999999999999987543322


Q ss_pred             E-EEEEEecC-CCCe-eccCc---ceeCCCeeEEEEEEccC
Q psy12132         77 Q-FIQLSGIP-NIPV-FQKSS---RRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        77 ~-~~~l~~~~-~~~~-~~~~~---~~~~~~~~~l~~~~~~~  111 (126)
                      . .+.+.+.. .++. .....   ....++.+.|.|...+.
T Consensus        92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~  132 (213)
T 2x1w_L           92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTE  132 (213)
T ss_dssp             CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEEC
T ss_pred             EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECC
Confidence            2 24555432 1222 22211   34578899999999764

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.51  E-value=2.8e-13  Score=79.33  Aligned_cols=107  Identities=10%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeE--EEEEecCCCCCCEEEEEEEecCCcee--EEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASNNLGSS--QQFI   79 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~   79 (126)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+...... ........  .|.|.++...|.|.|+|.+.+..+..  ...+
T Consensus        19 ~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~   96 (218)
T 1uct_A           19 VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL   96 (218)
T ss_dssp             EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred             ccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCE
Confidence            4678999999999976 67899999987554322111 11111223  79999999999999999999876422  3344


Q ss_pred             EEEecC--CCCeeccC--cceeCCCeeEEEEEEccCC
Q psy12132         80 QLSGIP--NIPVFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        80 ~l~~~~--~~~~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      .|.+..  .+|.+...  .....++.+.|.|...+.+
T Consensus        97 ~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~  133 (218)
T 1uct_A           97 ELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIP  133 (218)
T ss_dssp             EEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSC
T ss_pred             EEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCC
Confidence            555432  34443322  2335788999999654443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.51  E-value=2.6e-13  Score=85.04  Aligned_cols=108  Identities=15%  Similarity=0.213  Sum_probs=77.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEE------eccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTA------ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..      +....++.. ..   ..|.|.++...|.|.|+|.+.|..|...
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  297 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ-VS---GTLIIKDAVVEDSGKYLCVVNNSVGGES  297 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE-ET---TEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             eEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec-cc---CEEEECcCCHHHCeEEEEEEecCCCcee
Confidence            3456799999999999999999999996422      222233322 22   2799999999999999999999999887


Q ss_pred             EEEEEEecCCCCeecc--CcceeCCCeeEEEEEEccCCcc
Q psy12132         77 QFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      ..+.|.+...+.....  ......++.+.|.|...+.++.
T Consensus       298 ~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  337 (388)
T 2v5m_A          298 VETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK  337 (388)
T ss_dssp             EEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCC
T ss_pred             EEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCC
Confidence            7777776533322221  1223467889999999776543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.51  E-value=1e-12  Score=78.48  Aligned_cols=119  Identities=13%  Similarity=0.191  Sum_probs=76.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Ee----------ccCCcEEEE--ecCCeEEEEEecCCCCCCEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AI----------TLGGRIDMH--VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~----------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++..  .   .+          ....++...  .......|.|.++...|+|.|
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y   91 (256)
T 3tf7_C           12 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVY   91 (256)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEE
T ss_pred             eEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            357789999999999998899999999832  1   11          112344442  233456899999999999999


Q ss_pred             EEEEecCCce----eEEEEEEEecC-------------------CCCeeccCcc---eeCCCeeEEEEEEccCCcceeEE
Q psy12132         65 MCQASNNLGS----SQQFIQLSGIP-------------------NIPVFQKSSR---RLGPDGYRLVWQVDTYSAIIQYL  118 (126)
Q Consensus        65 ~C~~~~~~~~----~~~~~~l~~~~-------------------~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~  118 (126)
                      .|.+.+..+.    ......|.+.+                   .++.+...+.   ...++.+.|.|...+..+   ..
T Consensus        92 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~---~v  168 (256)
T 3tf7_C           92 FCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHN---YM  168 (256)
T ss_dssp             EEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSCCS---EE
T ss_pred             EEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCCce---EE
Confidence            9999886431    11122344432                   2333333222   346889999999976533   23


Q ss_pred             EEEEE
Q psy12132        119 LKFRE  123 (126)
Q Consensus       119 ~~~r~  123 (126)
                      .|||+
T Consensus       169 ~W~k~  173 (256)
T 3tf7_C          169 YWYRQ  173 (256)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.51  E-value=4.2e-13  Score=81.11  Aligned_cols=80  Identities=20%  Similarity=0.432  Sum_probs=66.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC----cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      ..+..|+.+.|.|.+.+.|.|.+.|++++..+....    ++...  .....|.|.++...|.|.|+|.+.|..|.....
T Consensus       206 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  283 (291)
T 1qz1_A          206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS  283 (291)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC--TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEc--CCCcEEEEEecChhcCEEEEEEEEeCCCceEEE
Confidence            356789999999999999999999999998876543    33332  233589999999999999999999999998888


Q ss_pred             EEEEec
Q psy12132         79 IQLSGI   84 (126)
Q Consensus        79 ~~l~~~   84 (126)
                      +.|.|.
T Consensus       284 ~~l~V~  289 (291)
T 1qz1_A          284 IHLKVF  289 (291)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.51  E-value=3.1e-12  Score=86.98  Aligned_cols=110  Identities=18%  Similarity=0.282  Sum_probs=83.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE----ecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH----VSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~----~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+....++...    ..+ ....|.|.++...|.|.|+|.+.|..|....
T Consensus       439 ~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  518 (816)
T 3dmk_A          439 ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH  518 (816)
T ss_dssp             EEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEE
T ss_pred             eEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEE
Confidence            45678999999999999999999999999888766555432    122 2347999999999999999999999998888


Q ss_pred             EEEEEecCCCCeecc--CcceeCCCeeEEEEEEccCCc
Q psy12132         78 FIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        78 ~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ...+.+...| .+..  ......++.+.|.|...+.++
T Consensus       519 ~~~l~V~~~p-~~~~~~~~~v~~G~~v~l~C~~~g~p~  555 (816)
T 3dmk_A          519 SAKLNVYGLP-YIRQMEKKAIVAGETLIVTCPVAGYPI  555 (816)
T ss_dssp             EEEEEECSSC-EECCCCCEEEETTCCEEEECCEECSSE
T ss_pred             EEEEEEecCC-eeEccCCeEEecCCeEEEEEEecCCCC
Confidence            8888775433 2222  122356888999998877553

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.51  E-value=1.8e-13  Score=78.83  Aligned_cols=110  Identities=13%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             ceeccCCccEEEEEEee----ecCCCeeEEEECCEEecc------------CCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVY----ANPPAKVEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~----~~p~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      ++.+..|+++.|.|.+.    +.|.+.+.|++++..+..            ..+..+. ......|.|.+++..|.|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            46788999999999985    346678999999876520            1222221 123458999999999999999


Q ss_pred             EEEecCCcee-----EEEEEEEecCCC--CeeccCcceeCCCeeEEEEEEc-cCCc
Q psy12132         66 CQASNNLGSS-----QQFIQLSGIPNI--PVFQKSSRRLGPDGYRLVWQVD-TYSA  113 (126)
Q Consensus        66 C~~~~~~~~~-----~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-~~~~  113 (126)
                      |.+.+..|..     ...+.|.+...+  |.+.. .....++.+.|.|.+. +.++
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~-~~~~~g~~~~l~C~~~~g~P~  136 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD-FEIPTSNIRRIICSTSGGFPE  136 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE-EECSSTTEEEEEEEEEEESSC
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceEe-ccCCCCCeEEEEEecCCccCC
Confidence            9999865433     345666654432  22222 1123467889999994 6554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.51  E-value=1e-12  Score=75.87  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=69.1

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE-EEEecCCeEEEEEecCCCCCCEEEEEEEecCC-----ceeEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQ   77 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-----~~~~~   77 (126)
                      .+.+|++++|.|.+. .+.+.+.|+|++..+...... ..........|.|.++...|.|.|+|.+.+..     .....
T Consensus        18 ~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~   96 (201)
T 1nkr_A           18 LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSD   96 (201)
T ss_dssp             EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCC
T ss_pred             ccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCC
Confidence            467899999999997 477899999988654321110 01111123579999999999999999997542     12233


Q ss_pred             EEEEEec--CCCCeeccC--cceeCCCeeEEEEEEccC
Q psy12132         78 FIQLSGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        78 ~~~l~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~~  111 (126)
                      .+.|.+.  ..+|.+...  .....++.+.|.|...+.
T Consensus        97 ~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~  134 (201)
T 1nkr_A           97 PLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS  134 (201)
T ss_dssp             CEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSC
T ss_pred             CEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCC
Confidence            3444443  234443322  234578899999998754

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.50  E-value=1.2e-13  Score=78.90  Aligned_cols=78  Identities=27%  Similarity=0.544  Sum_probs=64.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l   81 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.....+   .|.|.++...|.|.|+|.+.|..|... ..+.|
T Consensus       110 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  186 (192)
T 2iep_A          110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKL  186 (192)
T ss_dssp             EEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEE
Confidence            45678999999999999999999999999888766666555444   799999999999999999999988763 34555


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus       187 ~V  188 (192)
T 2iep_A          187 EV  188 (192)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.50  E-value=1.2e-13  Score=86.14  Aligned_cols=100  Identities=10%  Similarity=0.016  Sum_probs=75.5

Q ss_pred             eeccCCccEEEEEEeee-----cCCCeeEEEECCEEecc--------CCcEEEEe----------cCCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITL--------GGRIDMHV----------SSEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-----~p~~~~~w~~~~~~~~~--------~~~~~~~~----------~~~~~~l~i~~~~~~   59 (126)
                      +.+.+|+.+.|.|.+.+     .|.|.+.|++++..+..        ..++....          ......|.|.++...
T Consensus       186 ~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  265 (363)
T 1wio_A          186 VYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ  265 (363)
T ss_dssp             EEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGG
T ss_pred             eEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcC
Confidence            45678999999998877     77889999999876654        34443322          112348999999999


Q ss_pred             CCEEEEEEEecC--CceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         60 DFGNYMCQASNN--LGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        60 d~g~y~C~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.|+|.+.|.  .|.....+.|.+.           ...++.+.|+|.+.+.++
T Consensus       266 d~G~Y~C~a~n~~~~g~~~~~~~l~V~-----------~v~g~~~~l~C~~~g~p~  310 (363)
T 1wio_A          266 YAGSGNLTLALEAKTGKLHQEVNLVVM-----------RATQLQKNLTCEVWGPTS  310 (363)
T ss_dssp             GCEEEEEEECBTTTTCCEEEEEEEEEE-----------EECCCSSSEEEEEESSCC
T ss_pred             cCcEEEEEEEEhhhcCeEEEEEeEEEE-----------EecCCCeeEEEEEccccC
Confidence            999999999999  8888888777765           122667889999877643

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.50  E-value=8.9e-13  Score=87.57  Aligned_cols=108  Identities=12%  Similarity=0.220  Sum_probs=80.5

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~   82 (126)
                      .+..|+++.|.|.+. .|.+.+.|++++..+....++.+...  ...|.|.++...|.|.|+|.+.|..|... ..+.|.
T Consensus       478 ~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~  554 (642)
T 1e07_A          478 PVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQLSNG--NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD  554 (642)
T ss_pred             eecCCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEEcCC--CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEE
Confidence            456899999999998 47889999999998877666655433  34899999999999999999999887653 345666


Q ss_pred             ecCCCCeecc---CcceeCCCeeEEEEEEccCCcc
Q psy12132         83 GIPNIPVFQK---SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        83 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +...|+.+..   ......++.+.|.|...+.++.
T Consensus       555 V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  589 (642)
T 1e07_A          555 VLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP  589 (642)
T ss_pred             EEeCCCcceecCCceeEEcCCcEEEEEEeccCCCC
Confidence            5433332222   2223567889999999877653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.50  E-value=4.2e-13  Score=77.65  Aligned_cols=112  Identities=17%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC-----cEEEEecCCeE--EEEEecCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-----RIDMHVSSEKH--SLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-----~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....     .......+...  .+.+.++...|.|.|+|.+.+..|.
T Consensus        18 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~   97 (212)
T 2v9r_A           18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE   97 (212)
T ss_dssp             CEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEE
T ss_pred             ceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCc
Confidence            4567889999999999999999999999998765332     11222222111  2344567899999999999998765


Q ss_pred             e-EEEEEEEecCCCCeecc---CcceeCCCeeEEEEEE-ccCCc
Q psy12132         75 S-QQFIQLSGIPNIPVFQK---SSRRLGPDGYRLVWQV-DTYSA  113 (126)
Q Consensus        75 ~-~~~~~l~~~~~~~~~~~---~~~~~~~~~~~l~~~~-~~~~~  113 (126)
                      . ...+.+.+...++.+..   ......++.+.|.|.. .+.++
T Consensus        98 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  141 (212)
T 2v9r_A           98 AVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPE  141 (212)
T ss_dssp             EECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESC
T ss_pred             eeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCC
Confidence            5 33444444322222221   2234568889999987 55544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.50  E-value=2.5e-12  Score=76.76  Aligned_cols=121  Identities=9%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC--E---Ee-c-------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG--T---AI-T-------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~--~---~~-~-------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.  +.+.+.|++..  .   .+ .             ...++.+..+  .....|.|.+++.
T Consensus        15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   94 (256)
T 3juy_B           15 AEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   94 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCc
Confidence            4678899999999999873  56789999732  1   11 0             1235655532  3456899999999


Q ss_pred             CCCEEEEEEEecC------------CceeEEEEEEEecCC--------------CCeeccC---cceeCCCeeEEEEEEc
Q psy12132         59 TDFGNYMCQASNN------------LGSSQQFIQLSGIPN--------------IPVFQKS---SRRLGPDGYRLVWQVD  109 (126)
Q Consensus        59 ~d~g~y~C~~~~~------------~~~~~~~~~l~~~~~--------------~~~~~~~---~~~~~~~~~~l~~~~~  109 (126)
                      .|+|.|.|.+.+.            .+.......|.+...              ++.....   .....++.+.|.|...
T Consensus        95 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  174 (256)
T 3juy_B           95 ADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSS  174 (256)
T ss_dssp             GGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEES
T ss_pred             ccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEEC
Confidence            9999999999886            222233334554332              2222221   2235688999999997


Q ss_pred             cCCcceeEEEEEEE
Q psy12132        110 TYSAIIQYLLKFRE  123 (126)
Q Consensus       110 ~~~~~~~~~~~~r~  123 (126)
                      +.++.. ...|||+
T Consensus       175 ~~~~~~-~v~W~k~  187 (256)
T 3juy_B          175 HSIRSR-RVAWYQH  187 (256)
T ss_dssp             SCCTTC-CEEEEEE
T ss_pred             CCcCCe-eEEEEEE
Confidence            754311 2344554

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.50  E-value=1.9e-12  Score=79.06  Aligned_cols=119  Identities=11%  Similarity=0.063  Sum_probs=79.2

Q ss_pred             ceeccCCccEEEEEEeee-------cCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          2 HSITAPDMRAEIICNVYA-------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-------~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ++.+..|+++.|.|.+.+       .|.+.+.|.+++..+... ++... ++....|.|.++.+.+ |.|+|.+.+....
T Consensus        13 ~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~~-g~Y~C~a~~~g~~   89 (303)
T 1i1r_A           13 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASLN-IQLTCNILTFGQL   89 (303)
T ss_dssp             SCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCSE-EEEEEEEEETTTE
T ss_pred             CceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCCc-eEEEEecccCCCc
Confidence            456789999999999985       377899999999887543 33333 2334589999998874 9999999874212


Q ss_pred             e--EEEEEEEe--cCCCCeeccCcceeCCCeeEEEEEEccC-CcceeEEEEEEEe
Q psy12132         75 S--QQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVWQVDTY-SAIIQYLLKFRER  124 (126)
Q Consensus        75 ~--~~~~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~r~~  124 (126)
                      .  .....+.+  .+.+|.... ........+.++|.+... ..+..|.+.|+..
T Consensus        90 ~~~~~~~~l~v~~~P~~P~~l~-~~~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~  143 (303)
T 1i1r_A           90 EQNVYGITIISGLPPEKPKNLS-CIVNEGKKMRCEWDGGRETHLETNFTLKSEWA  143 (303)
T ss_dssp             EEEEEEEEEEEECCCCCCEEEE-EEEETTSCCEEEEECCSCCSSCCEEEEEEEET
T ss_pred             ceEEEEEEEeccCCCCCCeeeE-EEECCCCcEEEEccCCCCCCCCcCEEEEEEec
Confidence            1  22233333  344444322 122344689999998322 2357899999864

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.50  E-value=1.7e-12  Score=76.51  Aligned_cols=119  Identities=15%  Similarity=0.244  Sum_probs=73.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e------------ccCCcEEEEe-cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I------------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~------------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~   63 (126)
                      ++.+.+|+++.|.|. .+.|.+.+.|+++  +..   +            ....++.+.. ......|.|.+++..|.|.
T Consensus         9 ~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   87 (238)
T 2p1y_A            9 NKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV   87 (238)
T ss_dssp             EEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred             ceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence            467889999999999 7788899999985  211   1            0123555443 2234589999999999999


Q ss_pred             EEEEEecCCcee-----EEEEEEEecCCCC-----------eecc---CcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         64 YMCQASNNLGSS-----QQFIQLSGIPNIP-----------VFQK---SSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        64 y~C~~~~~~~~~-----~~~~~l~~~~~~~-----------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      |.|.+.+..+..     .....+.+...++           .+..   ......++.+.|.|...+.+..  ...|||+
T Consensus        88 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i~W~k~  164 (238)
T 2p1y_A           88 YFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQ  164 (238)
T ss_dssp             EEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC--EEEEEEE
T ss_pred             EEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC--cEEEEEE
Confidence            999999865421     1222344433221           2221   1224578899999998766442  2345554

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.50  E-value=1.7e-13  Score=78.24  Aligned_cols=103  Identities=14%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             eeccCCccEEEEEEee--ecCCCeeEEEE--CCEEe----------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVY--ANPPAKVEWFR--DGTAI----------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~--~~p~~~~~w~~--~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +....|+++.|.|...  +.+.+.+.|++  ++..+          ....++.+..++   +|.|.++++.|.|.|+|.+
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEEEE
T ss_pred             EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEEEE
Confidence            5677899999999543  24466899999  87665          234566666555   8999999999999999999


Q ss_pred             ecCCceeE--EEEEEEecC--CCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         69 SNNLGSSQ--QFIQLSGIP--NIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        69 ~~~~~~~~--~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+..|...  ..+.|.+..  ..|.+..     ....+.|+|.+.+.++
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~~p~  129 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERVSKPKISW-----TCINTTLTCEVMNGTD  129 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCCCCCEEEE-----ETTTTEEEEECSSCSS
T ss_pred             EeCCCceeEEEEEEEEEcCcCCCCEEEE-----ccCcEEEEeEccCCCC
Confidence            98776543  455566543  2333322     2236889999876553

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.49  E-value=2e-12  Score=77.05  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             eeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+.+.|.|.+.+.|.+ .+.|++++..+...          ...|.|.++...|.|.|+|.+.+..++....+.+
T Consensus        11 ~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v   80 (262)
T 3rjd_A           11 VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEI   80 (262)
T ss_dssp             SEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEE
T ss_pred             EEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEEecCCccccEEEEE
Confidence            467889999999999988887 99999999876532          1269999999999999999999876655444443


Q ss_pred             EecCCCCeecc-CcceeCCCeeEEEEEEccCCc
Q psy12132         82 SGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .  ..+..... ......++.+.|.|......+
T Consensus        81 ~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p  111 (262)
T 3rjd_A           81 H--RGWLLLQVSSRVFTEGEPLALRCHAWKDKL  111 (262)
T ss_dssp             E--CSSEEEEESCSEEETTSCEEEEEEEGGGCC
T ss_pred             e--ccceEecCCCeEEecCCeEEEEEEccCCCC
Confidence            3  22222221 222347888999999944433

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.49  E-value=3.1e-13  Score=78.50  Aligned_cols=78  Identities=19%  Similarity=0.438  Sum_probs=62.9

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE-EE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF-IQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~   80 (126)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.. ..+   .|.|.++...|.|.|+|.+.|..|..... +.
T Consensus       120 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  195 (212)
T 2yd1_A          120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-KDG---FLQIENSREEDQGKYECVAENSMGTEHSKATN  195 (212)
T ss_dssp             EEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE-ETT---EEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             eEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc-cCC---eEEEccCChhhCEEEEEEeecCCCceeEEEEE
Confidence            35567999999999999999999999999887653 44433 333   89999999999999999999999887643 56


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus       196 l~V~  199 (212)
T 2yd1_A          196 LYVK  199 (212)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.49  E-value=5.7e-13  Score=82.81  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             ccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-------CCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-------SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ...|+.+.|.|.+.|.|.|.+.|++++..+...........       .....|.|.++...|.|.|+|.+.|..|....
T Consensus       258 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  337 (347)
T 2ifg_A          258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA  337 (347)
T ss_dssp             CEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceee
Confidence            34688999999999999999999999988875444332111       12457999999999999999999999999988


Q ss_pred             EEEEEecC
Q psy12132         78 FIQLSGIP   85 (126)
Q Consensus        78 ~~~l~~~~   85 (126)
                      .+.+.|..
T Consensus       338 ~~~l~V~~  345 (347)
T 2ifg_A          338 SIMAAFMD  345 (347)
T ss_dssp             EEEECSCC
T ss_pred             EEEEEecC
Confidence            88887753

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.49  E-value=8.6e-13  Score=79.68  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=77.7

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEE-CCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe-cCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~   79 (126)
                      +.+.+|+++.|.|.+.+.+.+. +.|++ ++..+....++.....+   .|.|.++...|.|.|+|.+. +..+.....+
T Consensus        99 ~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~  175 (289)
T 3ejj_X           99 VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGI  175 (289)
T ss_dssp             EEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             EEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccE
Confidence            5677899999999998877665 99986 66666666666665444   79999999999999999998 5445555566


Q ss_pred             EEEecC---CCCeeccCcc---eeCCCeeEEEEEEccCCc
Q psy12132         80 QLSGIP---NIPVFQKSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        80 ~l~~~~---~~~~~~~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.+..   .+|.+...+.   ...++.+.|.|...+..|
T Consensus       176 ~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p  215 (289)
T 3ejj_X          176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV  215 (289)
T ss_dssp             EEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSS
T ss_pred             EEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCC
Confidence            666542   3444333222   236888999999976433

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.49  E-value=2.7e-12  Score=77.74  Aligned_cols=119  Identities=14%  Similarity=0.263  Sum_probs=76.1

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E--E-ec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T--A-IT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~--~-~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|++++  .  . +.              ...++....+  .....|.|.+++.
T Consensus        35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  114 (282)
T 1qok_A           35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS  114 (282)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence            35678899999999998775  5789999853  1  1 10              1245655442  2356899999999


Q ss_pred             CCCEEEEEEEecCCc---e--eEEEEEEEecCC--------------CCeeccCc---ceeCCCeeEEEEEEccCCccee
Q psy12132         59 TDFGNYMCQASNNLG---S--SQQFIQLSGIPN--------------IPVFQKSS---RRLGPDGYRLVWQVDTYSAIIQ  116 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~---~--~~~~~~l~~~~~--------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  116 (126)
                      .|.|.|.|.+.+..|   .  ......|.|...              ++.+...+   ....++.+.|.|...+.++   
T Consensus       115 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~---  191 (282)
T 1qok_A          115 EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSVS---  191 (282)
T ss_dssp             GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCCS---
T ss_pred             hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCCc---
Confidence            999999999998764   1  112223444322              22222211   2456889999999976652   


Q ss_pred             EEEEEEE
Q psy12132        117 YLLKFRE  123 (126)
Q Consensus       117 ~~~~~r~  123 (126)
                      ...|||+
T Consensus       192 ~v~W~k~  198 (282)
T 1qok_A          192 YMHWFQQ  198 (282)
T ss_dssp             CCEEEEE
T ss_pred             eEEEEEE
Confidence            2345553

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=73.10  Aligned_cols=73  Identities=25%  Similarity=0.504  Sum_probs=56.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee--EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~   79 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+....         ...|.|.++...|.|.|+|.+.|..+..  ...+
T Consensus        19 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~   89 (96)
T 2ens_A           19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV   89 (96)
T ss_dssp             TSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------CSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred             CCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------CCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence            3467889999999999999999999999887665332         2379999999999999999999964432  3344


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .+.+
T Consensus        90 ~v~V   93 (96)
T 2ens_A           90 SISI   93 (96)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.48  E-value=1.5e-12  Score=73.14  Aligned_cols=99  Identities=16%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+.+.| .+.+.|++++..+.....          .+.+.++...|.|.|+|.+.+......  +.+
T Consensus        14 ~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~~~s~~--~~l   81 (170)
T 3ry4_A           14 INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQTSLSDP--VHL   81 (170)
T ss_dssp             SEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTSBCCCC--EEE
T ss_pred             eEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCCCceEe--EEE
Confidence            3577899999999998876 568999999988764321          355678899999999999997654444  444


Q ss_pred             EecCCCCeecc-CcceeCCCeeEEEEEEccCCc
Q psy12132         82 SGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+...+..... ......++.+.|.|...+..+
T Consensus        82 ~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p  114 (170)
T 3ry4_A           82 TVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKP  114 (170)
T ss_dssp             EEECCSEEEECSCSEECTTCCEEEEEEEGGGCC
T ss_pred             EEECCceEecCCCceeecCCeEEEEEECCCCCC
Confidence            44333222222 222346788999999965544

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.48  E-value=2.3e-12  Score=73.71  Aligned_cols=107  Identities=11%  Similarity=0.157  Sum_probs=70.5

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee--EEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l   81 (126)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+...... .........|.|.+++..|.|.|+|.+.+..+..  ...+.|
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l   91 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   91 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEE
Confidence            4678999999999874 45789999998765421000 0011234589999999999999999998754322  334445


Q ss_pred             Eec--CCCCeeccC--cceeCCCeeEEEEEEccCC
Q psy12132         82 SGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        82 ~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      .+.  ..+|.+...  .....++.+.|.|...+..
T Consensus        92 ~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~  126 (188)
T 1oll_A           92 VVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT  126 (188)
T ss_dssp             EEESCSCCCEEEEESCSEEETTCEEEEEEECSSSC
T ss_pred             EecccCCCCeEEECCCCccccCCEEEEEEEcCCCC
Confidence            443  234443322  2245788999999986544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-12  Score=85.16  Aligned_cols=112  Identities=18%  Similarity=0.272  Sum_probs=75.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--EE---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--TA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++  ..   +.         ...++.....+....|.|.+++..|.|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (523)
T 2rcj_C            9 SASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCA   88 (523)
T ss_pred             ceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEE
Confidence            467889999999999998889999999864  11   11         12455544444566899999999999999999


Q ss_pred             EecCCce---eEEEEEEEec---CCCCeeccC---cceeCCCeeEEEEEEccCCc
Q psy12132         68 ASNNLGS---SQQFIQLSGI---PNIPVFQKS---SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        68 ~~~~~~~---~~~~~~l~~~---~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+..|.   ......|.+.   ..+|.+...   .....++.+.|.|.+.+.++
T Consensus        89 a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p  143 (523)
T 2rcj_C           89 SWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYP  143 (523)
T ss_pred             EccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccC
Confidence            9987642   1223344442   223332221   12235678999999987654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-12  Score=84.98  Aligned_cols=108  Identities=13%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             ccCCccEEEEEEeeec-CCC-eeEEEECCEEeccCCcEEEE-ecC---CeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          5 TAPDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMH-VSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~~-~~~w~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      +.+|+.+.|.|.+.+. |.| .+.|++++..+......... .++   ....|.|.++...| |.|+|.+.|..|.....
T Consensus       231 ~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~  309 (523)
T 2rcj_C          231 STSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  309 (523)
T ss_pred             cccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceE
Confidence            4679999999999886 777 89999998764321100111 111   12479999999999 99999999998877666


Q ss_pred             EEEEecCCCCeeccCcc----eeCCCeeEEEEEEccCCc
Q psy12132         79 IQLSGIPNIPVFQKSSR----RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        79 ~~l~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~  113 (126)
                      ..+.+...|......+.    ...++.+.|.|...+.+|
T Consensus       310 ~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p  348 (523)
T 2rcj_C          310 KRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH  348 (523)
T ss_pred             EecCCCcCceEEecCCCchhhcccCCceEEEEEEecccC
Confidence            66654433333332221    245788999999987643

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.48  E-value=7.4e-14  Score=80.17  Aligned_cols=110  Identities=17%  Similarity=0.222  Sum_probs=73.1

Q ss_pred             ceeccCCccEEEEEE-eeecCC-CeeEEEECCEEecc--CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          2 HSITAPDMRAEIICN-VYANPP-AKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~-~~~~p~-~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ++.+.+|+++.|.|. +.+.|. +.+.|++++..+..  ..+....  .....|.|.++...|.|.|+|.+.+..+....
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   94 (201)
T 3s97_C           17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS--QTNGNLYIANVEASDKGNYSCFVSSPSITKSV   94 (201)
T ss_dssp             CEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             eEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEE--cCCCeEEECcCCcccCeEEEEEEEecCCCcch
Confidence            467889999999999 888888 99999998866542  2222222  22347999999999999999999986544332


Q ss_pred             ---EEEEEecC------CCCeecc---CcceeCCCeeEEEEEEccCCc
Q psy12132         78 ---FIQLSGIP------NIPVFQK---SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        78 ---~~~l~~~~------~~~~~~~---~~~~~~~~~~~l~~~~~~~~~  113 (126)
                         .+.+.+..      .+|.+..   ......++.+.|.|...+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~  142 (201)
T 3s97_C           95 FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV  142 (201)
T ss_dssp             ECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESC
T ss_pred             hhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCC
Confidence               22222211      1222211   222356788999999877644

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.48  E-value=9.2e-14  Score=80.03  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=71.8

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC-c--eeEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-G--SSQQFIQ   80 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~--~~~~~~~   80 (126)
                      .+.+|+++.|.|.+.+.|. .+.|+|++..+....... ........|.|.++...|.|.|+|.+.|.. |  .....+.
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~   92 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLE   92 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEE
T ss_pred             cccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEE
Confidence            5678999999999987765 799999987653211100 001122479999999999999999999876 4  2234455


Q ss_pred             EEecC--CCCeeccC--cceeCCCeeEEEEEEccCC
Q psy12132         81 LSGIP--NIPVFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        81 l~~~~--~~~~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      |.+..  .+|.+...  .....++.+.|.|...+..
T Consensus        93 l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~  128 (198)
T 1ugn_A           93 LVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAF  128 (198)
T ss_dssp             EEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCC
T ss_pred             EEEcccccCCccccCCccccCCCCcEEEEEecCCCC
Confidence            55433  23433322  2345788999999997763

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.48  E-value=8.1e-13  Score=74.68  Aligned_cols=102  Identities=13%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc------------CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      .+.+..|++++|.|.+. .|.+.+.|++++..+..            ..++.+.  ..+.+|.|.+++..|.|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC--TTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe--CCCCeEEECCCChhhCceEEEEEe
Confidence            46788999999999985 47889999998764321            1122221  123489999999999999999999


Q ss_pred             cCCceeEEEEEEEecC--CCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         70 NNLGSSQQFIQLSGIP--NIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +..+  ...+.|.|..  ..|.+.....     ...|+|.+.+.++
T Consensus        81 n~~~--~~~~~L~V~~~~~~p~i~~~~~-----~~~L~C~~~~~p~  119 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMVSKPMIYWECS-----NATLTCEVLEGTD  119 (171)
T ss_dssp             TCCS--CEEEEEEEECCCCCCEEEEETT-----TTEEEEECSSCSS
T ss_pred             CCCC--cEEEEEEEECcCCCCEEEEecC-----CcEEEEEeCCCCC
Confidence            8877  4455555533  3333322111     1379999876543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.48  E-value=3.4e-13  Score=78.03  Aligned_cols=80  Identities=19%  Similarity=0.400  Sum_probs=63.1

Q ss_pred             eeccCCccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE-EEE
Q psy12132          3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~   80 (126)
                      +.+..|+.+.|.|.+ .+.|.+.+.|++++..+...........+   .|.|.++...|.|.|+|.+.|..|.... .+.
T Consensus       121 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~  197 (212)
T 2v9r_A          121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAE  197 (212)
T ss_dssp             EEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             eEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC---eEEEeeCCHhhCeeEEEEEecccCceecceEE
Confidence            456789999999998 88999999999999887654332223333   7999999999999999999999887654 366


Q ss_pred             EEecC
Q psy12132         81 LSGIP   85 (126)
Q Consensus        81 l~~~~   85 (126)
                      |.+..
T Consensus       198 l~V~~  202 (212)
T 2v9r_A          198 LTVLE  202 (212)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.48  E-value=5.7e-13  Score=83.43  Aligned_cols=78  Identities=23%  Similarity=0.377  Sum_probs=67.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      ..+..|+.+.|.|.+.+.|.|.+.|++++..+....++... .+   .|.|.++...|.|.|+|.+.|..|...+.+.|.
T Consensus       304 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~-~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  379 (382)
T 1cs6_A          304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-GG---ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT  379 (382)
T ss_dssp             EEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-TT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE-CC---EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEE
Confidence            45678999999999999999999999999988776666543 22   799999999999999999999999998888887


Q ss_pred             ec
Q psy12132         83 GI   84 (126)
Q Consensus        83 ~~   84 (126)
                      |.
T Consensus       380 V~  381 (382)
T 1cs6_A          380 VQ  381 (382)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.48  E-value=3.6e-13  Score=83.48  Aligned_cols=103  Identities=13%  Similarity=0.145  Sum_probs=69.0

Q ss_pred             eccCCccEEEEEEe-----eecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC-cee--
Q psy12132          4 ITAPDMRAEIICNV-----YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-GSS--   75 (126)
Q Consensus         4 ~~~~g~~~~l~C~~-----~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~--   75 (126)
                      .+..|+.+.|.|.+     .+.|.+.+.|++++..+....++.  ..+  ..|.|.++...|.|.|+|.+.|.. |..  
T Consensus       131 ~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~--~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~  206 (349)
T 4dep_C          131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--PEG--MNLSFLIALISNNGNYTCVVTYPENGRTFH  206 (349)
T ss_dssp             EETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE--EET--TEEEEESCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             eeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee--ecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEE
Confidence            56789999999985     678899999999998875443332  222  379999999999999999999875 443  


Q ss_pred             -EEEEEEEecCC-----CCeeccCc-----ceeCCCeeEEEEEEcc
Q psy12132         76 -QQFIQLSGIPN-----IPVFQKSS-----RRLGPDGYRLVWQVDT  110 (126)
Q Consensus        76 -~~~~~l~~~~~-----~~~~~~~~-----~~~~~~~~~l~~~~~~  110 (126)
                       ...+.+.+...     +|.+....     ....++.+.|.|...+
T Consensus       207 ~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~  252 (349)
T 4dep_C          207 LTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF  252 (349)
T ss_dssp             EEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEE
T ss_pred             EEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEE
Confidence             56666666432     45444322     2345777899999864

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.48  E-value=3.9e-12  Score=74.18  Aligned_cols=109  Identities=17%  Similarity=0.292  Sum_probs=72.0

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEEec-----------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (219)
T 1c1e_H            9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN   88 (219)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            45788999999999998765  678999986  32211                 1245555432  2356899999999


Q ss_pred             CCCEEEEEEEecCCce----eEEEEEEEecC---CCCeecc-C--cceeCCCeeEEEEEEcc
Q psy12132         59 TDFGNYMCQASNNLGS----SQQFIQLSGIP---NIPVFQK-S--SRRLGPDGYRLVWQVDT  110 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~----~~~~~~l~~~~---~~~~~~~-~--~~~~~~~~~~l~~~~~~  110 (126)
                      .|.|.|.|.+.+..+.    ......+.+..   .+|.+.. .  .....++.+.|+|.+.+
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g  150 (219)
T 1c1e_H           89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKG  150 (219)
T ss_dssp             GGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEE
T ss_pred             ccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEccc
Confidence            9999999999987531    11233444432   1232221 1  12346788999999977

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.48  E-value=1.4e-12  Score=75.64  Aligned_cols=110  Identities=18%  Similarity=0.243  Sum_probs=71.6

Q ss_pred             ceeccCCccEEEEEEeeec-------CCCeeEEEECCEE------ec-----------cCCcEEEEec--CCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYAN-------PPAKVEWFRDGTA------IT-----------LGGRIDMHVS--SEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-------p~~~~~w~~~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~   55 (126)
                      .+.+.+|+++.|.|.+.+.       +.+.+.|++++..      +.           ...++.+..+  ..+..|.|.+
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   88 (214)
T 2zg1_A            9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGD   88 (214)
T ss_dssp             EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEcc
Confidence            4677899999999998754       4678999997642      10           1235544332  1345799999


Q ss_pred             CCCCCCEEEEEEEecCCceeE----EEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccC
Q psy12132         56 IKDTDFGNYMCQASNNLGSSQ----QFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~~~~----~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (126)
                      ++..|.|.|.|.+.+..+...    ..+.|.+.  +.+|.+........++.+.|+|.+.+.
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~  150 (214)
T 2zg1_A           89 ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGS  150 (214)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTC
T ss_pred             CCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccC
Confidence            999999999999987653221    23444443  234444332223467889999999664

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.47  E-value=2e-13  Score=77.73  Aligned_cols=105  Identities=13%  Similarity=0.264  Sum_probs=70.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEE--ecc------------CCcEEEEe---cCCeEEEEEecCCCCCCEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTA--ITL------------GGRIDMHV---SSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~--~~~------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~y   64 (126)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++..  +..            ..++....   ..+...|.|.++...|.|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            35788999999999998888899999998752  211            11222221   11234699999999999999


Q ss_pred             EEEEecCCceeEEEEEEEecCCCCeeccCcceeCCCeeEEEEEEccCC
Q psy12132         65 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        65 ~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (126)
                      +|.+.+..+.  ..+.+.....    ........++.+.|.|...+.+
T Consensus        84 ~C~~~~~~~~--~~l~V~~~~~----~~~~~v~~g~~~~l~C~~~~~p  125 (184)
T 2ny1_B           84 ICEVEDQKEE--VQLLVFGLTA----NSDTHLLQGQSLTLTLESPPGS  125 (184)
T ss_dssp             EEEETTEEEE--EEEEEEEEEE----SSCSEEETTCCEEEEEECCTTC
T ss_pred             EEEEEcCCCc--EEEEEEEecC----CCCceeecCCCEEEEEEcCCCC
Confidence            9999987542  2232221111    1112345788899999997754

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.47  E-value=3.5e-13  Score=77.35  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+....+  ...  ....|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       123 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  198 (201)
T 3s97_C          123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE--IST--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY  198 (201)
T ss_dssp             EEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCE--EET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCcee--ecC--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEE
Confidence            4567899999999999999999999999886654322  221  123899999999999999999999999888888777


Q ss_pred             ec
Q psy12132         83 GI   84 (126)
Q Consensus        83 ~~   84 (126)
                      +.
T Consensus       199 V~  200 (201)
T 3s97_C          199 VQ  200 (201)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.47  E-value=2.3e-13  Score=79.73  Aligned_cols=109  Identities=11%  Similarity=0.174  Sum_probs=72.6

Q ss_pred             ceeccCCccEEEEEEeeecCC-CeeEEEECCEE-----ec----cC----CcEE----------EEecCCeEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP-AKVEWFRDGTA-----IT----LG----GRID----------MHVSSEKHSLLVRHIK   57 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~-----~~----~~----~~~~----------~~~~~~~~~l~i~~~~   57 (126)
                      ++.+.+|+++.|.|.+.+.+. +.+.|++++..     +.    ..    .++.          +..+   ..|.|.++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---~~L~i~~v~   85 (231)
T 2pet_A            9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ---GRLVLAEAQ   85 (231)
T ss_dssp             EEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT---CCEEESSCC
T ss_pred             cEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC---ceEEEcccC
Confidence            467889999999999998885 89999975422     11    01    1111          2222   249999999


Q ss_pred             CCCCEEEEEEEecCC-ceeEEEEEEEecC--CCCeeccCcc---eeCCCee-EEEEEE-ccCCc
Q psy12132         58 DTDFGNYMCQASNNL-GSSQQFIQLSGIP--NIPVFQKSSR---RLGPDGY-RLVWQV-DTYSA  113 (126)
Q Consensus        58 ~~d~g~y~C~~~~~~-~~~~~~~~l~~~~--~~~~~~~~~~---~~~~~~~-~l~~~~-~~~~~  113 (126)
                      ..|.|.|+|.+.+.. +.....+.|.+..  ..+.+.....   ...++.+ .|.|.. .+.++
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~  149 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA  149 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccC
Confidence            999999999999875 6666666666543  3333333222   2245566 999998 56554

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.46  E-value=4.1e-12  Score=83.06  Aligned_cols=112  Identities=11%  Similarity=0.064  Sum_probs=75.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.+.+...+.|++++..+.....+.. .+....+|.|.++...|.|.|+|.+.+..+.....+.+
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v  135 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV  135 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEE
Confidence            36788999999999999888889999999887654444432 12223469999999999999999999988877777777


Q ss_pred             EecCCCCeecc-CcceeCCCeeEEEEEEccCCcc
Q psy12132         82 SGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.+.+..... +.....++...|.|.+.|.++.
T Consensus       136 ~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P  169 (527)
T 3qs9_E          136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEP  169 (527)
T ss_dssp             EEC-----CEEEEEEEECSSSSCEEEEEEESSCC
T ss_pred             EECCceeeccCCCcEEecCCceEEEEEEceecCC
Confidence            66532211111 1112234566899999887553

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.46  E-value=8.7e-13  Score=79.85  Aligned_cols=82  Identities=15%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEe----ccCCcEEEE---ecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAI----TLGGRIDMH---VSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~----~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ..+.+|+++.|.|.+.+.|.|. +.|++++..+    .........   .......|.|.++...|.|.|+|.+.|..|.
T Consensus       198 ~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~  277 (290)
T 2o26_X          198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS  277 (290)
T ss_dssp             CCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCE
T ss_pred             ceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCc
Confidence            3567899999999999999996 9999987652    222222111   1122358999999999999999999999999


Q ss_pred             eEEEEEEEec
Q psy12132         75 SQQFIQLSGI   84 (126)
Q Consensus        75 ~~~~~~l~~~   84 (126)
                      ....+.|.+.
T Consensus       278 ~~~~~~l~V~  287 (290)
T 2o26_X          278 ANVTTTLKVV  287 (290)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEEEEEE
Confidence            8888887764

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.46  E-value=2.7e-13  Score=78.71  Aligned_cols=112  Identities=19%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.|.+.+.|+++  +..+.            ...++..........|.|.++...|.|.|.|.
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   87 (212)
T 1nfd_E            8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (212)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence            45678999999999988887788999984  22221            13566655555567899999999999999999


Q ss_pred             EecC-Ccee--EEEEEEEe--cC-CCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         68 ASNN-LGSS--QQFIQLSG--IP-NIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        68 ~~~~-~~~~--~~~~~l~~--~~-~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+. .+..  .....+.+  .+ .+|.+.. ..  ....++.+.|.|.+.+..|
T Consensus        88 ~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p  142 (212)
T 1nfd_E           88 SSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYP  142 (212)
T ss_dssp             EEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBS
T ss_pred             EEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeEC
Confidence            9962 2111  11223333  21 2333332 11  1234678999999977633

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.46  E-value=4.4e-12  Score=74.03  Aligned_cols=110  Identities=16%  Similarity=0.268  Sum_probs=72.0

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Ee-c---------------cCCcEEEEec--CCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AI-T---------------LGGRIDMHVS--SEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~-~---------------~~~~~~~~~~--~~~~~l~i~~~   56 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++++  .   .+ .               ...++.+..+  .....|.|.++
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence            46788999999999998766  6789999842  1   11 0               0245655432  23568999999


Q ss_pred             CCCCCEEEEEEEecCCcee---EEEEEEEecC---CCCeecc-C--cceeCCCeeEEEEEEccC
Q psy12132         57 KDTDFGNYMCQASNNLGSS---QQFIQLSGIP---NIPVFQK-S--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        57 ~~~d~g~y~C~~~~~~~~~---~~~~~l~~~~---~~~~~~~-~--~~~~~~~~~~l~~~~~~~  111 (126)
                      +..|.|.|.|.+.+..+..   .....+.+..   .+|.+.. .  .....++.+.|+|.+.+.
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~  152 (220)
T 1pz5_B           89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGY  152 (220)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEE
T ss_pred             CHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEE
Confidence            9999999999999864321   1223444331   2333221 1  123457889999999776

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.45  E-value=1.7e-12  Score=80.43  Aligned_cols=103  Identities=19%  Similarity=0.227  Sum_probs=72.6

Q ss_pred             ceeccCCccEEEEEEeeecCC-----------CeeEEEECCE------Eec---cCCcEEEEecCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP-----------AKVEWFRDGT------AIT---LGGRIDMHVSSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-----------~~~~w~~~~~------~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~   61 (126)
                      ++.+.+|+.+.|.|.+.+.|.           +.+.|++++.      .+.   ...++. ...+   .|.|.++...|.
T Consensus        16 ~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~---~L~i~~~~~~D~   91 (349)
T 4dep_C           16 QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS-KEKD---VLWFRPTLLNDT   91 (349)
T ss_dssp             CCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE-EETT---EEEESSCCGGGC
T ss_pred             eEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEe-ecCC---EEEEccCChhhC
Confidence            467889999999999987654           8999999773      111   112222 2222   799999999999


Q ss_pred             EEEEEEEecCCceeEEEEEEEecCCCCeecc------CcceeCCCeeEEEEEE
Q psy12132         62 GNYMCQASNNLGSSQQFIQLSGIPNIPVFQK------SSRRLGPDGYRLVWQV  108 (126)
Q Consensus        62 g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~l~~~~  108 (126)
                      |.|+|.+.|..+.....+.|.+...+.....      ......++.+.|.|..
T Consensus        92 G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  144 (349)
T 4dep_C           92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPN  144 (349)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCS
T ss_pred             EEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCC
Confidence            9999999998888877777776543332211      1123467789999974

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.45  E-value=1.4e-13  Score=85.56  Aligned_cols=108  Identities=13%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCE-EEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.+.|.+.+.|++++..+......  ........|.|.++...|.| .|+|.+.+..|.....+.
T Consensus       167 ~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~  244 (347)
T 2ifg_A          167 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ  244 (347)
T ss_dssp             SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred             ceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEE
Confidence            346788999999999999999999999987543211100  01223458999999999999 999999999888777776


Q ss_pred             EEecCCCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         81 LSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+...|.....  ....++.+.|.|.+.|.++
T Consensus       245 l~V~~~P~i~~~--~~~~g~~v~l~C~~~g~P~  275 (347)
T 2ifg_A          245 VNVSFPASVQLH--TAVEMHHWCIPFSVDGQPA  275 (347)
T ss_dssp             CCCBEEEEEEEC--CCEESSSEEEEEEEEEESC
T ss_pred             EEEcCCCeeeec--cCccCceEEEEEEeeecCC
Confidence            665433322122  2235678999999987744

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=85.07  Aligned_cols=102  Identities=17%  Similarity=0.206  Sum_probs=76.7

Q ss_pred             ceeccCCccEEEEEEee-------ecCCCeeEEEECCEEe--ccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVY-------ANPPAKVEWFRDGTAI--TLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-------~~p~~~~~w~~~~~~~--~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ++.+.+|+++.|.|.+.       +.|.+.+.|++++..+  ...  .++. ..++   .|.|.++...|.|.|+|.+.+
T Consensus        27 ~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~---~L~i~~v~~~D~G~Y~C~~~n  102 (339)
T 3o4o_C           27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-AQDG---ALWLLPALQEDSGTYVCTTRN  102 (339)
T ss_dssp             CEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE-EETT---EEEESSBCTTCCEEEECCEEE
T ss_pred             EEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE-eeCC---eEEECCCCcccCEEEEEEEEC
Confidence            46788999999999997       8889999999988763  222  2332 2233   799999999999999999999


Q ss_pred             CCceeEEEEEEEecCCCCee----ccCcceeCCCeeEEEEE
Q psy12132         71 NLGSSQQFIQLSGIPNIPVF----QKSSRRLGPDGYRLVWQ  107 (126)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~l~~~  107 (126)
                      ..|.....+.|.+...++..    ........++.+.|.|.
T Consensus       103 ~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~  143 (339)
T 3o4o_C          103 ASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP  143 (339)
T ss_dssp             TTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECC
T ss_pred             CcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEec
Confidence            88878778777775443321    11223457888999998

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.2e-12  Score=77.18  Aligned_cols=85  Identities=20%  Similarity=0.427  Sum_probs=63.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE----CCEEeccCCcEEEE--------ecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR----DGTAITLGGRIDMH--------VSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~----~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ..+..|+.+.|.|.+.+.|.+.+.|++    ++..+.........        .......|.|.++...|.|.|+|.+.|
T Consensus       124 ~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N  203 (241)
T 3grw_A          124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN  203 (241)
T ss_dssp             EECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEec
Confidence            456779999999999999999999999    77665433221110        011235799999999999999999999


Q ss_pred             CCceeEEEEEEEecCCC
Q psy12132         71 NLGSSQQFIQLSGIPNI   87 (126)
Q Consensus        71 ~~~~~~~~~~l~~~~~~   87 (126)
                      ..|.....+.|.+...+
T Consensus       204 ~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          204 FIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             SSCEEEEEEEEEC----
T ss_pred             CcceEEEEEEEEecCCC
Confidence            99999888888875433

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.45  E-value=6.8e-13  Score=78.03  Aligned_cols=112  Identities=19%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             ceeccCCccEEEEEEeeecCC-C-eeEEEECC--EEe---c---------cCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPP-A-KVEWFRDG--TAI---T---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~-~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.+. + .+.|++++  ..+   .         ...++..........|.|.+++..|.|.|.
T Consensus        28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  107 (234)
T 2j6e_L           28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYY  107 (234)
T ss_dssp             CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEE
T ss_pred             cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEE
Confidence            356788999999999987543 4 69999852  111   0         124565554455678999999999999999


Q ss_pred             EEEecCCce---eEEEEEEEecC---CCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         66 CQASNNLGS---SQQFIQLSGIP---NIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        66 C~~~~~~~~---~~~~~~l~~~~---~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.+.+..+.   ......+.+..   .+|.+.. .+  ....++.+.|.|.+.+..|
T Consensus       108 C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p  164 (234)
T 2j6e_L          108 CATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFP  164 (234)
T ss_dssp             EEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSS
T ss_pred             EEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcC
Confidence            999987662   12223333321   2232221 11  1234668999999977544

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.45  E-value=2.8e-12  Score=76.13  Aligned_cols=109  Identities=17%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             eeccCCccEEEEEEeeecCCCe-----eEEEECCEEec--------cCCcEEEEe----------cCCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-----VEWFRDGTAIT--------LGGRIDMHV----------SSEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-----~~w~~~~~~~~--------~~~~~~~~~----------~~~~~~l~i~~~~~~   59 (126)
                      +.+..|+++.|.|.+.+.|.+.     +.|++++....        .........          ...+..|.|.+++..
T Consensus        13 ~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~   92 (248)
T 3pv7_A           13 QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLE   92 (248)
T ss_dssp             EEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGG
T ss_pred             eEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHH
Confidence            4678899999999999888775     99998532110        001000000          112346999999999


Q ss_pred             CCEEEEEEEecCCceeEEEEEEEecCCCCeecc-CcceeCCCeeEEEEEEccC
Q psy12132         60 DFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK-SSRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        60 d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~  111 (126)
                      |.|.|+|.+.+..+.....+.|.+...|.+... ......+..+.|+|.+.+.
T Consensus        93 D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~  145 (248)
T 3pv7_A           93 EAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGF  145 (248)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEE
T ss_pred             HCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccE
Confidence            999999999998777777777776543332222 1222345678899999773

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.45  E-value=3.9e-12  Score=73.77  Aligned_cols=109  Identities=18%  Similarity=0.240  Sum_probs=70.8

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEEe---c-------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTAI---T-------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~---~-------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++  +...   .             ...++.+..+  .....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   88 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE   88 (210)
T ss_dssp             CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence            35678999999999998765  478999984  2111   0             1346655432  23568999999999


Q ss_pred             CCEEEEEEEecCCceeEEEEEEEec---CCCCeec-cC--cceeCCCeeEEEEEEccC
Q psy12132         60 DFGNYMCQASNNLGSSQQFIQLSGI---PNIPVFQ-KS--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        60 d~g~y~C~~~~~~~~~~~~~~l~~~---~~~~~~~-~~--~~~~~~~~~~l~~~~~~~  111 (126)
                      |.|.|.|.+.+.. .......+.+.   +.+|.+. ..  .....++.+.|+|.+.+.
T Consensus        89 D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  145 (210)
T 3d9a_H           89 DTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY  145 (210)
T ss_dssp             GCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeE
Confidence            9999999998853 11112233332   1233322 11  123467889999999776

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.45  E-value=5.9e-12  Score=74.59  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=73.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEE--------------CCEEeccC----CcEEEEec-CCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFR--------------DGTAITLG----GRIDMHVS-SEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~--------------~~~~~~~~----~~~~~~~~-~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.| ..+.+.+.+.|++              ++......    .++.+... .....|.|.+++..|.|
T Consensus        11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   89 (245)
T 4ei6_B           11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA   89 (245)
T ss_dssp             EEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred             eEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence            36788999999999 6567888999998              22211111    55655442 34568999999999999


Q ss_pred             EEEEEEecC----CceeEEEEEEEecC-----CCCee-ccCcc---eeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         63 NYMCQASNN----LGSSQQFIQLSGIP-----NIPVF-QKSSR---RLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        63 ~y~C~~~~~----~~~~~~~~~l~~~~-----~~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .|.|.+.+.    .........+.+..     .+|.. ...+.   ...++.+.|.|...+..|.. ..+.|.+
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~-~~v~W~~  162 (245)
T 4ei6_B           90 VYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH-VELSWWV  162 (245)
T ss_dssp             EEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC-EEEEEEE
T ss_pred             EEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCC-eEEEEEE
Confidence            999999852    22222233344332     23322 22111   12367899999987754422 2445544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.45  E-value=1.2e-11  Score=72.48  Aligned_cols=112  Identities=11%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Eec--------------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+..+.  ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            46788999999999998765  4789999842  1   110              12466655432  357899999999


Q ss_pred             CCCEEEEEEEecCCc------eeEEEEEEEecC---CCCeecc-C--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLG------SSQQFIQLSGIP---NIPVFQK-S--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~------~~~~~~~l~~~~---~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..+      .......|.|..   .+|.+.. .  .....++.+.|.|.+.+..|
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  155 (223)
T 1dee_B           89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLP  155 (223)
T ss_dssp             GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBS
T ss_pred             HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeC
Confidence            999999999988642      111223455432   2333221 1  11246778999999977633

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.45  E-value=1.3e-12  Score=78.09  Aligned_cols=122  Identities=13%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec-cC-------------CcEEEE--ecCCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT-LG-------------GRIDMH--VSSEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~-~~-------------~~~~~~--~~~~~~~l~i~~~~~~d   60 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++.  +   ..+. ..             .+....  .......|.|.+++..|
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   90 (259)
T 3omz_A           11 SVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEND   90 (259)
T ss_dssp             CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGG
T ss_pred             eeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCccc
Confidence            46778999999999999888889999982  1   1111 00             011111  11223579999999999


Q ss_pred             CEEEEEEEecCCc---eeEEEEEEEecCC----------------CCeeccC---cceeCCCeeEEEEEEccCCcceeEE
Q psy12132         61 FGNYMCQASNNLG---SSQQFIQLSGIPN----------------IPVFQKS---SRRLGPDGYRLVWQVDTYSAIIQYL  118 (126)
Q Consensus        61 ~g~y~C~~~~~~~---~~~~~~~l~~~~~----------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~  118 (126)
                      +|.|.|.+.+..+   .......|.+...                .+.+...   .....++.+.|.|...+..+.. ..
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~v  169 (259)
T 3omz_A           91 SGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSY-YI  169 (259)
T ss_dssp             CEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSC-EE
T ss_pred             CEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCc-eE
Confidence            9999999998654   2222333443321                1222222   2245788999999886542222 24


Q ss_pred             EEEEEe
Q psy12132        119 LKFRER  124 (126)
Q Consensus       119 ~~~r~~  124 (126)
                      .|||..
T Consensus       170 ~W~k~~  175 (259)
T 3omz_A          170 FWYKRL  175 (259)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            455543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.45  E-value=8.6e-12  Score=82.91  Aligned_cols=107  Identities=11%  Similarity=0.270  Sum_probs=77.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~   82 (126)
                      .+..|+.+.|.|.+.+ |.+.+.|++++..+....++.+...  ...|.|.++...|.|.|+|.+.+..+.. ...+.|.
T Consensus       122 ~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~  198 (642)
T 1e07_A          122 PVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNG--NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILN  198 (642)
T ss_pred             eEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcCC--CCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEE
Confidence            3567889999999987 8899999999988876666655432  2489999999999999999999877643 3445555


Q ss_pred             ecC--CCCeecc-CcceeCCCeeEEEEEEccCCc
Q psy12132         83 GIP--NIPVFQK-SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        83 ~~~--~~~~~~~-~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +..  ..+.+.. ......++.+.|.|...+.++
T Consensus       199 V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~  232 (642)
T 1e07_A          199 VLYGPDAPTISPLNTSYRSGENLNLSCHAASNPP  232 (642)
T ss_pred             EEeCCCCcEEecCCcccccCCEEEEEEEcCCCCC
Confidence            442  2222221 222356888999999966654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.45  E-value=1.6e-12  Score=80.66  Aligned_cols=112  Identities=15%  Similarity=0.264  Sum_probs=75.2

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEEec-----------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (344)
T 1za6_B            9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRS   88 (344)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            46788999999999998763  578999986  32210                 1346665543  3456899999999


Q ss_pred             CCCEEEEEEEecCCceeEEEEEEEecC---CCCeec-cC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGSSQQFIQLSGIP---NIPVFQ-KS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~~~~~~l~~~~---~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..+.......|.+..   .+|.+. ..  .....++.+.|.|.+.+..|
T Consensus        89 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  149 (344)
T 1za6_B           89 EDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  149 (344)
T ss_dssp             GGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBS
T ss_pred             ccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEEC
Confidence            999999999998654443444555432   233222 11  12246788999999977633

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.44  E-value=2.5e-13  Score=83.79  Aligned_cols=106  Identities=17%  Similarity=0.155  Sum_probs=74.1

Q ss_pred             ceeccCCccEEEEEEeeec---------CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCE-EEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYAN---------PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~---------p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~   71 (126)
                      ++.+.+|+++.|.|.+.+.         |.+.+.|++++..+....+.  ...+   .|.|.++...|.| .|+|.+.+.
T Consensus        38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~---~L~i~~v~~~D~Gs~Y~C~a~n~  112 (329)
T 3oq3_B           38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG---DLWIANYTSNDSHRRYLCTVTTK  112 (329)
T ss_dssp             EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETT---EEEESSCCGGGGGCCEEEEEECT
T ss_pred             eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecc---eEEEcCCChHhCCCcEEEEEEeC
Confidence            3568899999999999874         55789999988665433332  2233   8999999999999 899999998


Q ss_pred             CceeEEEEEEEecCCCCeeccC---cceeCCCeeEEEEEEccCC
Q psy12132         72 LGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  112 (126)
                      .|.........+...+|.....   .....++.+.|.|...+.+
T Consensus       113 ~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p  156 (329)
T 3oq3_B          113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAK  156 (329)
T ss_dssp             TSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCC
T ss_pred             CCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCC
Confidence            8765544433333333332221   1123577899999887765

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.44  E-value=1e-11  Score=72.65  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Eec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            46788999999999998765  5789999842  1   111              1246665543  3456899999999


Q ss_pred             CCCEEEEEEEecCCce---eEEEEEEEecC---CCCeecc-C-cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGS---SQQFIQLSGIP---NIPVFQK-S-SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~---~~~~~~l~~~~---~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..+.   ......|.|..   .+|.+.. . .....++.+.|.|.+.+..|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P  151 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFP  151 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBS
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEEC
Confidence            9999999999886442   11223444432   2233221 1 11245778999999976644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=2.9e-13  Score=87.25  Aligned_cols=79  Identities=22%  Similarity=0.423  Sum_probs=63.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEecc---CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITL---GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|++++..+..   ..++....++   .|.|.++...|.|.|+|.+.|..|...+.+
T Consensus       395 ~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  471 (477)
T 2id5_A          395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGTYLCIAANAGGNDSMPA  471 (477)
T ss_dssp             EEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTS---CEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             EEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCC---EEEEeeCChHHCEEEEEEEEeCCCcEEEEE
Confidence            5678899999999999999999999998866542   2344333333   699999999999999999999999888887


Q ss_pred             EEEec
Q psy12132         80 QLSGI   84 (126)
Q Consensus        80 ~l~~~   84 (126)
                      .+.|.
T Consensus       472 ~l~V~  476 (477)
T 2id5_A          472 HLHVR  476 (477)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77653

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.44  E-value=5.6e-12  Score=82.88  Aligned_cols=107  Identities=11%  Similarity=0.239  Sum_probs=77.2

Q ss_pred             eeccCCccEEEEEEeeecCCCee----EEEE--CCE--Eecc---------CCcEEEEec--CCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKV----EWFR--DGT--AITL---------GGRIDMHVS--SEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~----~w~~--~~~--~~~~---------~~~~~~~~~--~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|+++.|.|.+.+.|.+.+    .|++  ++.  .+..         ..++.+...  .+...|.|.++...|.|.
T Consensus       341 ~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~  420 (585)
T 2ocw_A          341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF  420 (585)
T ss_pred             eEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEE
Confidence            45678999999999999999877    7998  775  3321         234444322  123459999999999999


Q ss_pred             EEEEEecCCceeEEEEEEEecCCCCeecc--CcceeCCCeeEEEEEEcc
Q psy12132         64 YMCQASNNLGSSQQFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDT  110 (126)
Q Consensus        64 y~C~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~  110 (126)
                      |+|.+ |..|.....+.|.+...+|.+..  ......++.+.|+|...+
T Consensus       421 Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~  468 (585)
T 2ocw_A          421 YWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPC  468 (585)
T ss_pred             EEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecC
Confidence            99998 88887778888887654444333  223456788999999853

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.44  E-value=4.2e-13  Score=80.36  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             ceeccCCccEEEEEEee---ecCCCeeEEEECCEEecc------------------CCcEEEEe--cCCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVY---ANPPAKVEWFRDGTAITL------------------GGRIDMHV--SSEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~---~~p~~~~~w~~~~~~~~~------------------~~~~~~~~--~~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.   +.+.+.+.|++++.....                  ..++.+..  ...+..|.|.++..
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   93 (268)
T 3mj6_A           14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK   93 (268)
T ss_dssp             EEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCG
T ss_pred             ceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCH
Confidence            45778999999999987   666778999985432110                  12333211  11235799999999


Q ss_pred             CCCEEEEEEEecCCce--eEEEEEEEecCCCCeeccCcceeCCCeeEEEEEE
Q psy12132         59 TDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV  108 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (126)
                      .|.|.|+|.+.+..+.  ....+.+.+.+..|.   ......++.+.|.|..
T Consensus        94 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~---~~~v~~G~~v~L~C~~  142 (268)
T 3mj6_A           94 ADEGIYTCEIRLKNESMVMKKPVELWVLPEEPR---DLRVRVGDTTQMRCSI  142 (268)
T ss_dssp             GGCEEEEEEEEETTCCCEEEEEEEEEEECCCCS---EEEEETTCCEEECCBC
T ss_pred             hHCEEEEEEEEecCCcceEEEEEEEEEeccCCC---ccccccCCcEEEEEEe
Confidence            9999999999876443  345566666544332   2234567889999988

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.44  E-value=1e-12  Score=76.39  Aligned_cols=77  Identities=23%  Similarity=0.417  Sum_probs=61.8

Q ss_pred             eeccCCccEEEEEEe-eecCCCeeEEEECCEEecc--------CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAITL--------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+..        ..++.....+   .|.|.++...|.|.|+|.+.|..|
T Consensus       118 ~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~G  194 (217)
T 2vr9_A          118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG---NLLISNVEPIDEGNYKCIAQNLVG  194 (217)
T ss_dssp             EEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTT---EEEESSCCSTTCEEEEEEEEETTE
T ss_pred             cEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCC---cEEEeeCCHHHCeEEEEEEEcccc
Confidence            456789999999998 8999999999999988762        2344333333   799999999999999999999998


Q ss_pred             eeEEEEEEE
Q psy12132         74 SSQQFIQLS   82 (126)
Q Consensus        74 ~~~~~~~l~   82 (126)
                      .......+.
T Consensus       195 ~~~~~~~~l  203 (217)
T 2vr9_A          195 TRESSYAKL  203 (217)
T ss_dssp             EEECCCEEE
T ss_pred             eeccccEEE
Confidence            776654444

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.44  E-value=2.7e-13  Score=73.94  Aligned_cols=74  Identities=19%  Similarity=0.425  Sum_probs=56.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc----------CCcEEEEe---cCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL----------GGRIDMHV---SSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~----------~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+..          ..++....   ......|.|.++...|.|.|+|.+
T Consensus        30 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  109 (137)
T 3qr2_A           30 SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRA  109 (137)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEE
T ss_pred             CEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEE
Confidence            45677899999999999999999999997654321          11222211   112458999999999999999999


Q ss_pred             ecCCcee
Q psy12132         69 SNNLGSS   75 (126)
Q Consensus        69 ~~~~~~~   75 (126)
                      .|..|..
T Consensus       110 ~N~~G~~  116 (137)
T 3qr2_A          110 SNDPDRN  116 (137)
T ss_dssp             ECCTTSS
T ss_pred             EecCCcc
Confidence            9988765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.44  E-value=2e-12  Score=79.09  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-----EEecC-------CeEEEEEecCCCCC-CEEEEEEEe
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-----MHVSS-------EKHSLLVRHIKDTD-FGNYMCQAS   69 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-----~~~~~-------~~~~l~i~~~~~~d-~g~y~C~~~   69 (126)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+.......     .....       ....|.|.++...| .|.|+|.+.
T Consensus       219 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~  298 (315)
T 1itb_B          219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK  298 (315)
T ss_dssp             EECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEE
T ss_pred             EEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEe
Confidence            457789999999999999999999999998876543211     11110       13489999999999 999999999


Q ss_pred             cCCceeEEEEEEEec
Q psy12132         70 NNLGSSQQFIQLSGI   84 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~   84 (126)
                      |..|.....+.|.+.
T Consensus       299 N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          299 NTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CTTCCEEEEEEEECC
T ss_pred             cCCCceeEEEEEEec
Confidence            999999988888764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.44  E-value=8e-13  Score=81.60  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             eccCCccEEEEEE-----eeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc----
Q psy12132          4 ITAPDMRAEIICN-----VYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG----   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~-----~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----   73 (126)
                      .+..|+.+.|.|.     +.+.|.+.+.|++++..+... .++.....  ...|.|.++...|.|.|+|.+.|..|    
T Consensus       131 ~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  208 (339)
T 3o4o_C          131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--TTHLLVHDVALEDAGYYRCVLTFAHEGQQY  208 (339)
T ss_dssp             EEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTT--SSEEEESSCCGGGCEEEEEEEECCBTTBCC
T ss_pred             EEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCC--cceEEEcccCHhhCeEEEEEEEECCCCeEE
Confidence            4678999999999     788899999999999877644 34443322  23899999999999999999998766    


Q ss_pred             eeEEEEEEEecC----CCCeeccCcc---eeCCCeeEEEEEE---ccCCcceeEEEEEE
Q psy12132         74 SSQQFIQLSGIP----NIPVFQKSSR---RLGPDGYRLVWQV---DTYSAIIQYLLKFR  122 (126)
Q Consensus        74 ~~~~~~~l~~~~----~~~~~~~~~~---~~~~~~~~l~~~~---~~~~~~~~~~~~~r  122 (126)
                      .....+.|.+..    .+|.+...+.   ...++.+.|.|..   .+.++..  .++|.
T Consensus       209 ~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~--~v~W~  265 (339)
T 3o4o_C          209 NITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT--MLWWT  265 (339)
T ss_dssp             EEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSC--EEEEE
T ss_pred             EEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCc--eEEEE
Confidence            345566666542    2344443322   3457789999998   6665323  34454

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.44  E-value=4.8e-12  Score=75.94  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e---------ccC----CcEEEEec-CCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I---------TLG----GRIDMHVS-SEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~---------~~~----~~~~~~~~-~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|+++.|.|.+. .+.+.+.|++.  +..   +         ...    .++.+... ..+..|.|.+++..|.|.
T Consensus        36 v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~  114 (268)
T 3pl6_D           36 KVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAV  114 (268)
T ss_dssp             EEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEE
T ss_pred             EEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEE
Confidence            5678999999999986 67789999982  211   1         111    45555442 235789999999999999


Q ss_pred             EEEEEecC--CceeEEEEEEEecC-----CCCe-eccCcc---eeCCCeeEEEEEEccCCc
Q psy12132         64 YMCQASNN--LGSSQQFIQLSGIP-----NIPV-FQKSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        64 y~C~~~~~--~~~~~~~~~l~~~~-----~~~~-~~~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.+.+.  .........+.+..     .+|. ....+.   ...++.+.|+|.+.+..|
T Consensus       115 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p  175 (268)
T 3pl6_D          115 YLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  175 (268)
T ss_dssp             EEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             EEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccC
Confidence            99999873  22222233344332     1332 222111   123678999999977544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.43  E-value=4.1e-12  Score=76.94  Aligned_cols=123  Identities=13%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC--EE---e-c-------------cCCcEEEEe--cCCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG--TA---I-T-------------LGGRIDMHV--SSEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~--~~---~-~-------------~~~~~~~~~--~~~~~~l~i~~~~~   58 (126)
                      .+.+.+|++++|.|.+.+.  +.+.+.|++..  ..   + .             ...++.+..  ......|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (280)
T 3fku_X            9 AEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRS   88 (280)
T ss_dssp             CCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCS
T ss_pred             CEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            4567899999999999765  55789998732  10   0 0             113555542  23456899999999


Q ss_pred             CCCEEEEEEEecC---------CceeEEEEEEEecC--------------CCCeeccC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNN---------LGSSQQFIQLSGIP--------------NIPVFQKS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~---------~~~~~~~~~l~~~~--------------~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|+|.|.|.+.+.         .........|.+..              .++.+...  .....++.+.|.|...+..+
T Consensus        89 ~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~~~~  168 (280)
T 3fku_X           89 EDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNV  168 (280)
T ss_dssp             TTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCCCCC
T ss_pred             hhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecCCCC
Confidence            9999999999876         11122223344433              12333322  22456889999999976322


Q ss_pred             ceeEEEEEEEe
Q psy12132        114 IIQYLLKFRER  124 (126)
Q Consensus       114 ~~~~~~~~r~~  124 (126)
                      ......|||+.
T Consensus       169 ~~~~v~W~r~~  179 (280)
T 3fku_X          169 GNQGAAWLQQH  179 (280)
T ss_dssp             CTTCCEEEEEC
T ss_pred             CCceEEEEEEC
Confidence            11234456643

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.43  E-value=1.3e-12  Score=76.04  Aligned_cols=82  Identities=12%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEECCEEeccCCc-EEEEe-------cCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGR-IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+.+|+++.|.|.+.+.|.  +.+.|++++..+..... .....       ......|.|.+++..|.|.|+|.+.|..|
T Consensus       116 ~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g  195 (213)
T 2x1w_L          116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM  195 (213)
T ss_dssp             EEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             EEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCC
Confidence            6778999999999998654  47999998765321111 00000       11234799999999999999999999999


Q ss_pred             eeEEEEEEEecC
Q psy12132         74 SSQQFIQLSGIP   85 (126)
Q Consensus        74 ~~~~~~~l~~~~   85 (126)
                      ...+.+.|.|..
T Consensus       196 ~~~~~~~l~V~~  207 (213)
T 2x1w_L          196 TKKNSTFVRVHE  207 (213)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cEEEEEEEEEec
Confidence            988888888754

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.43  E-value=8.1e-14  Score=82.00  Aligned_cols=111  Identities=13%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--EEe---c---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--TAI---T---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+.+.+.+.|++++  ..+   .         ...++.....+....|.|.+++..|.|.|.|.+
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  112 (233)
T 3bqu_C           33 LSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQ  112 (233)
T ss_dssp             C-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEEE
T ss_pred             EEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEEE
Confidence            45788999999999988888889998842  111   0         112333222233458999999999999999999


Q ss_pred             ecCCcee-E--EEEEEEecCCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         69 SNNLGSS-Q--QFIQLSGIPNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        69 ~~~~~~~-~--~~~~l~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+..+.. .  ..+.+.....+|.... .+  ....++.+.|+|.+.+..|
T Consensus       113 ~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p  163 (233)
T 3bqu_C          113 SDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP  163 (233)
T ss_dssp             CSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS
T ss_pred             ecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccC
Confidence            8765422 1  1222222222333322 11  1224678999999977544

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.43  E-value=5.7e-12  Score=76.07  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=64.0

Q ss_pred             eccCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEec--CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          4 ITAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+.+|+++.|.|.+.+ .|.+.+.|++++..+...........  .....|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus       197 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~  276 (289)
T 3ejj_X          197 VRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMN  276 (289)
T ss_dssp             ECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEE
Confidence            4468999999999998 78899999999987754322111100  11348999999999999999999999999999998


Q ss_pred             EEecCCC
Q psy12132         81 LSGIPNI   87 (126)
Q Consensus        81 l~~~~~~   87 (126)
                      |.+...+
T Consensus       277 L~~~~~~  283 (289)
T 3ejj_X          277 FQVVESH  283 (289)
T ss_dssp             EECC---
T ss_pred             EEEEecc
Confidence            8865433

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.43  E-value=3.9e-12  Score=74.62  Aligned_cols=112  Identities=13%  Similarity=0.168  Sum_probs=73.2

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---ec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++..  ..   +.              ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45688999999999998776  6789999842  11   10              1246655543  2456899999999


Q ss_pred             CCCEEEEEEEecCCc-----e---eEEEEEEEecC---CCCee-ccCc--ceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLG-----S---SQQFIQLSGIP---NIPVF-QKSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~-----~---~~~~~~l~~~~---~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..+     .   ......|.|..   .+|.. ...+  ....++.+.|.|.+.+..|
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P  157 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  157 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBS
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEEC
Confidence            999999999998753     1   11223444432   22322 2111  2245788999999976533

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.43  E-value=4e-13  Score=81.24  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=74.9

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EE
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QF   78 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~   78 (126)
                      +.+.+|+++.|.|.+.+ |.  +.+.|+++ +..+....++.....+   .|.|.++...|.|.|+|.+.+..+... ..
T Consensus        99 ~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~  174 (292)
T 4dkd_C           99 VVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSIS  174 (292)
T ss_dssp             EEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCC
T ss_pred             EEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEE
Confidence            45678999999999986 44  78999996 5555444454443333   499999999999999999998766443 35


Q ss_pred             EEEEecC---CCCeeccCcc---eeCCCeeEEEEEEccCCc
Q psy12132         79 IQLSGIP---NIPVFQKSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        79 ~~l~~~~---~~~~~~~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      +.|.+..   .+|.+...+.   ...++.+.|.|...+.++
T Consensus       175 ~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~  215 (292)
T 4dkd_C          175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDV  215 (292)
T ss_dssp             EEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSS
T ss_pred             EEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCC
Confidence            5555543   2444433222   246888999999976654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=1.5e-11  Score=72.94  Aligned_cols=121  Identities=12%  Similarity=0.201  Sum_probs=73.9

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC--E---Eec--------------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG--T---AIT--------------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~--~---~~~--------------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.  +.+.+.|++..  .   .+.              ...++.+..+.  ....|.|.+++.
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (242)
T 1hxm_B           10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (242)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence            4567899999999999875  56789999842  1   111              23456554322  457899999999


Q ss_pred             CCCEEEEEEEecCCc-------eeEEEEEEEecCC------CC--eeccC--cceeCCCeeEEEEEEccCCcceeEEEEE
Q psy12132         59 TDFGNYMCQASNNLG-------SSQQFIQLSGIPN------IP--VFQKS--SRRLGPDGYRLVWQVDTYSAIIQYLLKF  121 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~-------~~~~~~~l~~~~~------~~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~  121 (126)
                      .|.|.|.|.+.+...       .......|.+...      +|  ....+  .....++.+.|+|.+.+..|. ...+.|
T Consensus        90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W  168 (242)
T 1hxm_B           90 QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD-VIKIHW  168 (242)
T ss_dssp             GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC-CEEEEE
T ss_pred             ccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC-CeEEEE
Confidence            999999999886420       1111234444321      12  11111  111247789999999776442 124555


Q ss_pred             EE
Q psy12132        122 RE  123 (126)
Q Consensus       122 r~  123 (126)
                      .+
T Consensus       169 ~~  170 (242)
T 1hxm_B          169 EE  170 (242)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.43  E-value=2.1e-12  Score=78.09  Aligned_cols=82  Identities=13%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc-EEEEe----cCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR-IDMHV----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++........ .....    ......|.|.++...|.|.|+|.+.|..|....
T Consensus       191 ~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  270 (289)
T 3mjg_X          191 TVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD  270 (289)
T ss_dssp             SEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEE
T ss_pred             ceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCcee
Confidence            3567899999999999999999999986654322111 11111    112358999999999999999999999999888


Q ss_pred             EEEEEec
Q psy12132         78 FIQLSGI   84 (126)
Q Consensus        78 ~~~l~~~   84 (126)
                      ...|.+.
T Consensus       271 ~~~l~v~  277 (289)
T 3mjg_X          271 EKAINIT  277 (289)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877764

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.42  E-value=1.1e-11  Score=76.02  Aligned_cols=105  Identities=10%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             ccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE-EEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-----EEE
Q psy12132          5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-----QQF   78 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~   78 (126)
                      +.+|+++.|.|.+. .+.+.+.|++++..+...... ..........|.|.++...|.|.|+|.+.|..+..     ...
T Consensus       130 v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~  208 (316)
T 3vh8_G          130 VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDP  208 (316)
T ss_dssp             EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCC
T ss_pred             cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCC
Confidence            56899999999995 567789999988665322111 11111233579999999999999999999876631     333


Q ss_pred             EEEEec--CCCCeeccCc--ceeCCCeeEEEEEEcc
Q psy12132         79 IQLSGI--PNIPVFQKSS--RRLGPDGYRLVWQVDT  110 (126)
Q Consensus        79 ~~l~~~--~~~~~~~~~~--~~~~~~~~~l~~~~~~  110 (126)
                      +.+.+.  ..+|.+...+  ....++.+.|.|....
T Consensus       209 ~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~  244 (316)
T 3vh8_G          209 LDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRS  244 (316)
T ss_dssp             EEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESS
T ss_pred             EEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCC
Confidence            444442  3444443322  2356889999999864

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.42  E-value=1.9e-12  Score=75.22  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCe---eEEEECCEEecc----------------CCcEEEE-------ecCCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANPPAK---VEWFRDGTAITL----------------GGRIDMH-------VSSEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~---~~w~~~~~~~~~----------------~~~~~~~-------~~~~~~~l~i~~   55 (126)
                      ++.+..|+++.|.|.+.+.+.+.   +.|+|++..+..                ..+....       ....+.+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            35678899999999998777664   789996532210                0111111       111245799999


Q ss_pred             CCCCCCEEEEEEEecCCceeEEEE-EEEecCCCCeec--cCcceeCCCeeEEEEEEccCCc
Q psy12132         56 IKDTDFGNYMCQASNNLGSSQQFI-QLSGIPNIPVFQ--KSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~~~~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ++..|.|.|.|.+.+..+...... .+.+...+....  ............+.|...+..|
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P  150 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRP  150 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBS
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCC
Confidence            999999999999988665443333 333332222221  1222334556677776644433

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.42  E-value=5.1e-12  Score=85.98  Aligned_cols=108  Identities=15%  Similarity=0.252  Sum_probs=80.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCce-eEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGS-SQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~-~~~~~~   80 (126)
                      ..+..|+++.|.|.+.+.|.+.+.|++++..+....+.....++   .|.|.++. ..|.|.|+|.+.|..|. ....+.
T Consensus       536 ~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~  612 (816)
T 3dmk_A          536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLE  612 (816)
T ss_dssp             EEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTS---EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEE
T ss_pred             eEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCC---eEEEEecCccccCEEEEEEEEECCCceeeeeEE
Confidence            45668999999999999998999999999988766666555444   79999998 58999999999998774 344555


Q ss_pred             EEecCCCCeec---cCcceeCCCeeEEEEEEccCCc
Q psy12132         81 LSGIPNIPVFQ---KSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        81 l~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+...+....   .......++.+.|.|...+.++
T Consensus       613 v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~  648 (816)
T 3dmk_A          613 VQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDL  648 (816)
T ss_dssp             EEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSS
T ss_pred             EEEecCCccccccccccccCCCCeEEEEEEEeCCCC
Confidence            55543333222   1223456889999999866544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.41  E-value=2.9e-12  Score=72.88  Aligned_cols=74  Identities=11%  Similarity=0.077  Sum_probs=60.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++..+.       ...   ..|.|.++...|.|.|+|.+.+..+.....+.|.
T Consensus       107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------~~~---~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~  176 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QGG---KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV  176 (184)
T ss_dssp             SEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------EES---SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------cCc---eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEE
Confidence            356789999999999989999999998864431       112   3799999999999999999999888888888887


Q ss_pred             ecCC
Q psy12132         83 GIPN   86 (126)
Q Consensus        83 ~~~~   86 (126)
                      +...
T Consensus       177 V~~~  180 (184)
T 2ny1_B          177 VLAF  180 (184)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            6543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.41  E-value=3.7e-12  Score=72.96  Aligned_cols=74  Identities=16%  Similarity=0.353  Sum_probs=60.0

Q ss_pred             eeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      ..+.+|+.+.|.|.+.+.|.| .+.|++++..+......     .....|.|.++.  |.|.|+|.+.|..|... +.+.
T Consensus       116 ~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~  188 (195)
T 2c5d_C          116 RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT  188 (195)
T ss_dssp             EEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEE
T ss_pred             EEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEE
Confidence            456789999999999999999 99999999877644332     233479999887  78999999999998775 6777


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.+
T Consensus       189 l~V  191 (195)
T 2c5d_C          189 ITV  191 (195)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.41  E-value=9.7e-12  Score=74.57  Aligned_cols=108  Identities=12%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCC-----ceeEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQ   77 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-----~~~~~   77 (126)
                      .+.+|++++|.|.+. .+.+.+.|+|++..+....... .........|.|.++...|.|.|+|.+.+..     ...+.
T Consensus        17 ~V~~G~~VtL~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~   95 (257)
T 1b6u_A           17 LVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSD   95 (257)
T ss_dssp             EEESSCCEEEEEEES-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCC
T ss_pred             EecCCCCEEEEEecC-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCC
Confidence            467899999999997 4577899999875432110000 0011234589999999999999999987532     12233


Q ss_pred             EEEEEec--CCCCeeccC--cceeCCCeeEEEEEEccCC
Q psy12132         78 FIQLSGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        78 ~~~l~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      .+.|.+.  ..+|.+...  .....++.+.|.|...+..
T Consensus        96 ~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~  134 (257)
T 1b6u_A           96 PLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY  134 (257)
T ss_dssp             CEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCC
T ss_pred             CEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCC
Confidence            4444443  234444322  2345788999999986654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.41  E-value=1.9e-12  Score=73.80  Aligned_cols=74  Identities=26%  Similarity=0.395  Sum_probs=59.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ..+..|+++.|.|.+.+.|.+.+.|++++..+...  .++....++   .|.|.++...|.|.|+|.+.|..+......
T Consensus       110 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  185 (191)
T 1epf_A          110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFK  185 (191)
T ss_dssp             EECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             EeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCC---eEEECCCChhhCEEEEEEEEEecceeEEEE
Confidence            45678999999999999999999999999887533  355444433   799999999999999999999775444333

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.41  E-value=1.4e-12  Score=81.29  Aligned_cols=96  Identities=8%  Similarity=0.026  Sum_probs=70.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      .+.+|+++.|.|.+.+.|.+.+.|++++..+.       ..   ...|.|.++...|.|.|+|.+.+..+.....+.+.+
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~~---~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v  176 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  176 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEECSSSCEE-------EE---SSEEEECSBCGGGCEECEEEEEETTEEEEECCEECE
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEcCCCccc-------cc---ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEE
Confidence            45789999999999889999999999864331       11   237999999999999999999988766666666665


Q ss_pred             cCCCCeeccCcceeCCCeeEEEEEEcc
Q psy12132         84 IPNIPVFQKSSRRLGPDGYRLVWQVDT  110 (126)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~  110 (126)
                      ...++.. .......++.+.|.|...+
T Consensus       177 ~~~p~~~-~~~~~~~G~~v~l~C~~~~  202 (363)
T 1wio_A          177 LAFQKAS-SIVYKKEGEQVEFSFPLAF  202 (363)
T ss_dssp             ECCSCSE-EEEEEETBCCEEEECCCCC
T ss_pred             ecCCCCC-CceEEecCCEEEEEEEEec
Confidence            4322222 2233456788999997755

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.41  E-value=5.1e-12  Score=80.40  Aligned_cols=110  Identities=17%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             ceeccCCccEEEEEEeeecCC----CeeEEEECC--EEe------------ccCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPP----AKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~----~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+.+.+.    +.+.|++++  ..+            ....++.....+....|.|.++...|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (438)
T 1qgc_4           10 SLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVAT   89 (438)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCee
Confidence            456889999999999987776    389999852  211            11346665555556789999999999999


Q ss_pred             EEEEEecCCcee---EEEEEEEecCCCCeecc-Cc--ceeCCCeeEEEEEEccC
Q psy12132         64 YMCQASNNLGSS---QQFIQLSGIPNIPVFQK-SS--RRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        64 y~C~~~~~~~~~---~~~~~l~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~  111 (126)
                      |+|.+.+..+..   ...+.+.....+|.+.. .+  ....+..+.|.|.+.+.
T Consensus        90 Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  143 (438)
T 1qgc_4           90 YYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  143 (438)
T ss_dssp             EEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccc
Confidence            999999876532   23333332222343322 11  12346689999998664

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.40  E-value=9.9e-12  Score=72.64  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=71.5

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---ec----------------cCCcEEEEec--CCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT----------------LGGRIDMHVS--SEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~~----------------~~~~~~~~~~--~~~~~l~i~~~   56 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +.                ...++.+..+  .....|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            45688999999999998765  6789999842  11   10                1245655543  23568999999


Q ss_pred             CCCCCEEEEEEEecCCc-----eeEEEEEEEecC---CCCeecc-C--cceeCCCeeEEEEEEccC
Q psy12132         57 KDTDFGNYMCQASNNLG-----SSQQFIQLSGIP---NIPVFQK-S--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        57 ~~~d~g~y~C~~~~~~~-----~~~~~~~l~~~~---~~~~~~~-~--~~~~~~~~~~l~~~~~~~  111 (126)
                      +..|.|.|.|.+.+..+     .......|.+..   .+|.+.. .  .....++.+.|+|.+.+.
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~  154 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY  154 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEE
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccE
Confidence            99999999999988643     111223344322   2333221 1  112357889999999775

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.40  E-value=2.4e-12  Score=74.35  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=61.5

Q ss_pred             ccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEEEEe
Q psy12132          5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLSG   83 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~~   83 (126)
                      +..|+.+.|.|.+.+.| |.+.|++++..+....++......  ..|.|.++...|.|.|+|.+.|..|... ..+.|.+
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v  198 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI  198 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeE
Confidence            56799999999998865 899999999988777676655432  4899999999999999999999988764 3444544

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.40  E-value=2.7e-12  Score=77.67  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=76.8

Q ss_pred             eeccCCccEEEEEEeeecCC-CeeEEE-ECCEEeccCCcEEEEecCCeEEEEEecCCCCCCE-EEEEEEecCCceeE-EE
Q psy12132          3 SITAPDMRAEIICNVYANPP-AKVEWF-RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLGSSQ-QF   78 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~-~~   78 (126)
                      +.+.+|+.+.|.|.+.+ |. +.+.|+ +++..+....++.....+   .|.|.++...|.| .|+|.+.|..+... ..
T Consensus       101 ~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~  176 (290)
T 2o26_X          101 LFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGTWLHSDK  176 (290)
T ss_dssp             EEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTT---EEEEESCCGGGTTCEEEEEEEETTEEEECCC
T ss_pred             eEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCC---CEEEecccHHHCCCEEEEEEEECCceEEeEE
Confidence            45678999999999985 77 899995 577777655555554443   7999999999999 99999999855432 23


Q ss_pred             EEEEec---CCCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         79 IQLSGI---PNIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        79 ~~l~~~---~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      +.+.+.   ..+|.+...   .....++.+.|.|...+.+..
T Consensus       177 ~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p  218 (290)
T 2o26_X          177 FTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS  218 (290)
T ss_dssp             EEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTT
T ss_pred             EEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcc
Confidence            455443   244444322   233567889999999876543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.40  E-value=2.1e-12  Score=73.80  Aligned_cols=69  Identities=13%  Similarity=0.379  Sum_probs=54.0

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEec-CCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      ....|+++.|.|.+.+ + +.+.|+|++..+....         +..|.|.+ +...|.|.|+|.+.|..|.....+.+.
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            3467999999999986 4 3499999998876431         12799999 999999999999999888755555554


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      +
T Consensus        79 v   79 (186)
T 1jbj_A           79 V   79 (186)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.40  E-value=6.5e-12  Score=65.78  Aligned_cols=70  Identities=19%  Similarity=0.442  Sum_probs=54.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.|.+.+.|+++.     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (108)
T 1jhl_L           10 YLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             eeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEEEE
Confidence            357889999999999998888899999853     1121         12466655444567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        90 ~~n~   93 (108)
T 1jhl_L           90 QHNE   93 (108)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            9875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.40  E-value=1.5e-12  Score=77.09  Aligned_cols=77  Identities=18%  Similarity=0.262  Sum_probs=56.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC------------------------cEEEEecCCeEEEEEecCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG------------------------RIDMHVSSEKHSLLVRHIKD   58 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~------------------------~~~~~~~~~~~~l~i~~~~~   58 (126)
                      +.+.+|+++.|.|.+.+.|.|.+.|++++..+....                        +....   ....|.|.++..
T Consensus       146 ~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~  222 (250)
T 2fbo_J          146 VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS---GARNLVIRAAKI  222 (250)
T ss_dssp             EECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE---TTTEEEECSCCG
T ss_pred             EEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC---CccEEEEecCCc
Confidence            455679999999999998999999999887654321                        11110   113899999999


Q ss_pred             CCCEEEEEEEecCC---ceeEEEEEEE
Q psy12132         59 TDFGNYMCQASNNL---GSSQQFIQLS   82 (126)
Q Consensus        59 ~d~g~y~C~~~~~~---~~~~~~~~l~   82 (126)
                      .|.|.|+|.+.|..   |.....+.|.
T Consensus       223 ~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          223 TDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             GGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             ccCEEEEEEecCCccccCccceeEEEe
Confidence            99999999999944   4445554443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.40  E-value=1.3e-11  Score=75.09  Aligned_cols=112  Identities=12%  Similarity=0.181  Sum_probs=72.0

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Eec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++.  .   .+.              ...++....+  .....|.|.+++.
T Consensus        31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  110 (291)
T 2gki_A           31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS  110 (291)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred             cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence            35678899999999998766  5789999842  1   110              1234444332  2356899999999


Q ss_pred             CCCEEEEEEEecCC-cee----EEEEEEEecC---------------CCCeeccCc---ceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNL-GSS----QQFIQLSGIP---------------NIPVFQKSS---RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~-~~~----~~~~~l~~~~---------------~~~~~~~~~---~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|+|.|.|.+.+.. |..    .....|.|..               .++.+...+   ....++.+.|+|...+.++
T Consensus       111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence            99999999998763 111    1122444433               122222222   2457889999999976654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.40  E-value=5.7e-12  Score=72.86  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCe---eEEEECCEEeccC------------------CcEEEEe---cCCeEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAK---VEWFRDGTAITLG------------------GRIDMHV---SSEKHSLLVRHIK   57 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~---~~w~~~~~~~~~~------------------~~~~~~~---~~~~~~l~i~~~~   57 (126)
                      .+.+..|+++.|.|.+.+.|.+.   +.|+|++..+...                  .++....   ...+.+|.|.+++
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   87 (218)
T 4frw_A            8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV   87 (218)
T ss_dssp             EEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCC
T ss_pred             eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeecc
Confidence            46788999999999998887664   8999865332110                  1111111   1123579999999


Q ss_pred             CCCCEEEEEEEecCCceeE-EEEEEEecCCCCe-ecc--CcceeCCCeeEEEEEEccCCc
Q psy12132         58 DTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPV-FQK--SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        58 ~~d~g~y~C~~~~~~~~~~-~~~~l~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ..|.|.|.|.+.+..+... ....+.+...++. ...  ......+..+.+.|...+.++
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~  147 (218)
T 4frw_A           88 QADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPA  147 (218)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSC
T ss_pred             HHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcC
Confidence            9999999999887544333 3333333222222 111  122234667888888876655

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.40  E-value=1.5e-11  Score=72.65  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--------------CEEec---cCCcEEEEe-cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--------------GTAIT---LGGRIDMHV-SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--------------~~~~~---~~~~~~~~~-~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+.+ +.+.+.|++.              +....   ...++.+.. ......|.|.+++..|.|.
T Consensus        11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~   89 (240)
T 3q5y_A           11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   89 (240)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence            367889999999999874 7789999982              11111   124555544 2346789999999999999


Q ss_pred             EEEEEecC---CceeEEEEEEEecC-----CCCeec-cCcc---eeCCCeeEEEEEEccCCc
Q psy12132         64 YMCQASNN---LGSSQQFIQLSGIP-----NIPVFQ-KSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        64 y~C~~~~~---~~~~~~~~~l~~~~-----~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.+.+.   .........+.+..     .+|... ..+.   ...++.+.|+|.+.+..|
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P  151 (240)
T 3q5y_A           90 YFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFP  151 (240)
T ss_dssp             EEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             EEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEEC
Confidence            99999732   11222222333321     233322 1111   123578999999977433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=82.99  Aligned_cols=81  Identities=25%  Similarity=0.397  Sum_probs=63.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-EEeccC---CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-TAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ++.+.+|+++.|.|.+ +.|.|.+.|++++ ..+...   .++....++   +|.|.+++..|.|.|+|.+.|..|...+
T Consensus       350 ~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  425 (440)
T 3zyj_A          350 DLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGNTTA  425 (440)
T ss_dssp             CEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTC---CEEESSCCSTTCEEEEEEEECSSCEEEE
T ss_pred             ceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCC---eEEEccCChhhCEEEEEEEEcCCCcEEE
Confidence            3567889999999999 5789999999944 333322   244444444   6999999999999999999999999998


Q ss_pred             EEEEEecCC
Q psy12132         78 FIQLSGIPN   86 (126)
Q Consensus        78 ~~~l~~~~~   86 (126)
                      .+.+.+...
T Consensus       426 ~~~~~v~~~  434 (440)
T 3zyj_A          426 SATLNVTGT  434 (440)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEecc
Confidence            888887543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.40  E-value=7.6e-12  Score=79.59  Aligned_cols=106  Identities=14%  Similarity=0.177  Sum_probs=70.5

Q ss_pred             CCccEEEEEEeee-cCCC-eeEEEECCEEeccCCcE--EEEe--cCC---eEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          7 PDMRAEIICNVYA-NPPA-KVEWFRDGTAITLGGRI--DMHV--SSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         7 ~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~~~~--~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+......  ....  ++.   ...|.|.++...|.|.|+|.+.|..+....
T Consensus       130 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  209 (438)
T 1qgc_4          130 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI  209 (438)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE
T ss_pred             cCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce
Confidence            4778999999987 6777 89999999877543111  1111  111   247999999999999999999998776544


Q ss_pred             EEEEEecCCCCeec--cCcceeCCCeeEEEEEEccCC
Q psy12132         78 FIQLSGIPNIPVFQ--KSSRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        78 ~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~  112 (126)
                      ...+.....+....  .......++.+.|.|...+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p  246 (438)
T 1qgc_4          210 VKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFI  246 (438)
T ss_dssp             EEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSC
T ss_pred             ecccccccceeEEecCCceEEecCCcEEEEEEEcccc
Confidence            44444322222211  122345688899999997765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.40  E-value=3.2e-12  Score=78.68  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=70.4

Q ss_pred             eccCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEe--cCC---eEEEEEecCCCCCCEEEEEEEecCCcee-
Q psy12132          4 ITAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHV--SSE---KHSLLVRHIKDTDFGNYMCQASNNLGSS-   75 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~-   75 (126)
                      .+.+|+.+.|.|.+.+.|++  .+.|++++..+..........  ++.   ...|.+.....+|.|.|+|.+.|..+.. 
T Consensus       128 ~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~  207 (327)
T 2wng_A          128 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGD  207 (327)
T ss_dssp             CBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSC
T ss_pred             ccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCC
Confidence            46779999999999988766  899999998875332111110  111   1257777777777899999999986652 


Q ss_pred             --EEEEEEEe-cCCCCeecc-CcceeCCCeeEEEEEEccCCc
Q psy12132         76 --QQFIQLSG-IPNIPVFQK-SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 --~~~~~l~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~  113 (126)
                        .....+.+ ...+|.+.. ......++.+.|.|...+.+|
T Consensus       208 ~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p  249 (327)
T 2wng_A          208 PLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYP  249 (327)
T ss_dssp             CEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEEBS
T ss_pred             cccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccccC
Confidence              33333322 223343332 122346888999999987533

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.40  E-value=5.4e-12  Score=74.16  Aligned_cols=110  Identities=16%  Similarity=0.275  Sum_probs=70.8

Q ss_pred             ceeccCCccEEEEEEeeecCC----CeeEEEEC--CEE---ec-------------cCCcEEEEec--CCeEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP----AKVEWFRD--GTA---IT-------------LGGRIDMHVS--SEKHSLLVRHIK   57 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~----~~~~w~~~--~~~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~   57 (126)
                      .+.+.+|+++.|.|.+.+.+.    +.+.|++.  +..   +.             ...++.+..+  .....|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   88 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD   88 (228)
T ss_dssp             CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred             ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence            457889999999999987764    88999874  211   10             1235555432  235689999999


Q ss_pred             CCCCEEEEEEEecCCc------e---eEEEEEEEecC---CCCeec-cCc--ceeCCCeeEEEEEEccC
Q psy12132         58 DTDFGNYMCQASNNLG------S---SQQFIQLSGIP---NIPVFQ-KSS--RRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        58 ~~d~g~y~C~~~~~~~------~---~~~~~~l~~~~---~~~~~~-~~~--~~~~~~~~~l~~~~~~~  111 (126)
                      ..|.|.|.|.+.+..|      .   ......|.+..   .+|.+. ..+  ....++.+.|+|.+.+.
T Consensus        89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~  157 (228)
T 3bae_H           89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGY  157 (228)
T ss_dssp             GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEE
T ss_pred             cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccE
Confidence            9999999999987643      1   11223444432   233222 111  12467889999999765

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.39  E-value=5.1e-12  Score=71.97  Aligned_cols=101  Identities=13%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEEC-CEEec------------cC--CcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRD-GTAIT------------LG--GRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~-~~~~~------------~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      ++.+.+|+++.|.|.+.+ .+.+.+.|++. +..+.            ..  .++.+  ...+.+|.|.+++..|.|.|+
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEEE
Confidence            467889999999999753 33678999984 32221            11  34433  123347999999999999999


Q ss_pred             EEEecCCceeEEEEEEEecCC--CCeeccCcceeCCCeeEEEEEE-cc
Q psy12132         66 CQASNNLGSSQQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQV-DT  110 (126)
Q Consensus        66 C~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~-~~  110 (126)
                      |.+.+.. .....+.|.|...  .|.+..     ....+.|+|.+ .+
T Consensus        86 C~v~~~~-~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~g  127 (180)
T 2dru_A           86 MRMLHET-EDQWKITMEVYEMVSKPMIYW-----ECSNATLTCEVLEG  127 (180)
T ss_dssp             EEEESSS-EEEEEEEEEEECCCCCCEEEE-----EGGGTEEEEECSSC
T ss_pred             EEEEcCC-eEEEEEEEEEECCCCCCEEEe-----cCCCEEEEEEeCCC
Confidence            9988765 5566666666432  233222     22458999999 55

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.39  E-value=2.4e-11  Score=66.30  Aligned_cols=83  Identities=18%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             ceeccCCccEEEEEEeeecCC---CeeEEEECCE--Eec---------------cCCcEEEEec---CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP---AKVEWFRDGT--AIT---------------LGGRIDMHVS---SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~---~~~~w~~~~~--~~~---------------~~~~~~~~~~---~~~~~l~i~~~~~   58 (126)
                      .+.+..|+++.|.|.+.+.+.   +.+.|++++.  .+.               ...++.+...   .....|.|.+++.
T Consensus        15 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   94 (139)
T 1pko_A           15 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   94 (139)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCH
Confidence            466788999999999975543   6899999763  110               0234444432   2356899999999


Q ss_pred             CCCEEEEEEEecCCceeEEEEEEEec
Q psy12132         59 TDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      .|.|.|+|.+.+..+.....+.|.|.
T Consensus        95 ~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           95 SDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            99999999999988877777888776

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.38  E-value=2.1e-12  Score=75.50  Aligned_cols=108  Identities=16%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             ccCCccEEEEEEeeecC---C-CeeEEEECCEEeccCCcEEEEe--cC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYANP---P-AKVEWFRDGTAITLGGRIDMHV--SS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p---~-~~~~w~~~~~~~~~~~~~~~~~--~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +.+|+++.|.|.+.+.+   . +.+.|++++..+..........  ++   ....|.|.++...|.|.|+|.+.+..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            67899999999998773   3 6899999987654321110000  00   12479999999999999999999876543


Q ss_pred             --EEEEEEE-ecCCCCeec-cCc--ceeCCCeeEEEEEEccCC
Q psy12132         76 --QQFIQLS-GIPNIPVFQ-KSS--RRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        76 --~~~~~l~-~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~  112 (126)
                        ...+.+. ....+|.+. ...  ....++.+.|.|.+.+..
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~  145 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFN  145 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEB
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeee
Confidence              2222211 112233322 111  112478899999998743

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.38  E-value=4.5e-11  Score=71.56  Aligned_cols=101  Identities=10%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             eeccCCccEEEEEEeee-cCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecC---CCCCCEE--EEEEEecCCce
Q psy12132          3 SITAPDMRAEIICNVYA-NPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI---KDTDFGN--YMCQASNNLGS   74 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g~--y~C~~~~~~~~   74 (126)
                      ..+.+|+++.|.|.+.+ .|.+  .+.|++++..+..  .  ....+.  .+.+..+   +..|.|.  |+|.+.+..+.
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~--~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~   86 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--T--VTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQS   86 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--E--EEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--e--EeeCCC--eEEEEeecccccccCCcceEEEEEecCCCC
Confidence            35678999999999998 7766  9999999987653  1  222222  3444444   7778884  99999999888


Q ss_pred             eEEEEEEEecCC-CCeec-cCcceeCCCeeEEEEEEc
Q psy12132         75 SQQFIQLSGIPN-IPVFQ-KSSRRLGPDGYRLVWQVD  109 (126)
Q Consensus        75 ~~~~~~l~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~  109 (126)
                      ......|.+... ++.+. .......++.+.|.|...
T Consensus        87 ~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~  123 (265)
T 2oz4_A           87 QETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH  123 (265)
T ss_dssp             EEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC
T ss_pred             cEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc
Confidence            877777776432 23332 233345688999999887

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.38  E-value=7.4e-12  Score=72.61  Aligned_cols=109  Identities=14%  Similarity=0.252  Sum_probs=68.2

Q ss_pred             ccCCccEEEEEEeeecC----CCeeEEEECCEEeccCCc-EE-EEecC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYANP----PAKVEWFRDGTAITLGGR-ID-MHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p----~~~~~w~~~~~~~~~~~~-~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +.+|+++.|.|.+.+.+    .+.+.|++++..+..... .. ...++   ....|.|.++...|.|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998874    248999999866532100 00 00011   12368999999999999999999987643


Q ss_pred             --EEEEEEE-ecCCCCeec-cCc--ceeCCCeeEEEEEEccCCc
Q psy12132         76 --QQFIQLS-GIPNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 --~~~~~l~-~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                        ...+.+. ....+|.+. ...  ....++.+.|.|.+.+..|
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P  138 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFP  138 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBS
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEEC
Confidence              2333221 112233322 111  1224778999999977543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.38  E-value=3.1e-12  Score=78.63  Aligned_cols=112  Identities=12%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             ceeccCCccEEEEEEeeec----CCCeeEEEECC--EE-------------e--ccCCcEEEE-ecCCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN----PPAKVEWFRDG--TA-------------I--TLGGRIDMH-VSSEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~----p~~~~~w~~~~--~~-------------~--~~~~~~~~~-~~~~~~~l~i~~~~~~   59 (126)
                      ++.+.+|+++.|.|.+.+.    +.+.+.|++++  ..             +  ....++.+. .......|.|.++...
T Consensus        23 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~  102 (331)
T 3u83_A           23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELE  102 (331)
T ss_dssp             EEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGG
T ss_pred             cEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcc
Confidence            3577899999999998765    34479999943  11             1  112344332 1123457999999999


Q ss_pred             CCEEEEEE-EecCCceeEEEEEEEecCCCCeec--c--CcceeCC---CeeEEEEE-EccCCc
Q psy12132         60 DFGNYMCQ-ASNNLGSSQQFIQLSGIPNIPVFQ--K--SSRRLGP---DGYRLVWQ-VDTYSA  113 (126)
Q Consensus        60 d~g~y~C~-~~~~~~~~~~~~~l~~~~~~~~~~--~--~~~~~~~---~~~~l~~~-~~~~~~  113 (126)
                      |.|.|+|. ..+..+.....+.|.+...|....  .  ......+   +.+.|.|. ..+.++
T Consensus       103 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~  165 (331)
T 3u83_A          103 DEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPP  165 (331)
T ss_dssp             GCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSC
T ss_pred             cCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCC
Confidence            99999998 555567677777777654433311  1  1112233   66999998 455443

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.38  E-value=5.3e-12  Score=68.62  Aligned_cols=70  Identities=19%  Similarity=0.387  Sum_probs=55.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CE---Ee-ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GT---AI-TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+.+.+|+++.|.|.+.+.  +.+.|+++  +.   .+ ....++.....+....|.|.+++..|+|.|.|.+.+..|
T Consensus        26 ~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g  101 (133)
T 3khq_A           26 FAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSA  101 (133)
T ss_dssp             EEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred             eEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence            3567889999999999876  88999986  32   12 234677776666677899999999999999999998754

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.38  E-value=6.1e-12  Score=76.04  Aligned_cols=103  Identities=12%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCC-eEEEEEecCCCCCCEEEEEEEecCCce---eEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQASNNLGS---SQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~---~~~   77 (126)
                      ++.+.+|+++.|.|.+.+.    +.|++++..+.  .+......+. ...|.|.++...|.|.|+|.+.|..|.   ...
T Consensus         9 ~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   82 (289)
T 3mjg_X            9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK   82 (289)
T ss_dssp             EEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCE
T ss_pred             eEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEE
Confidence            3567899999999998764    99999987653  1222222221 358999999999999999999987765   345


Q ss_pred             EEEEEecC-CCCeeccC-----cceeCCCeeEEEEEEcc
Q psy12132         78 FIQLSGIP-NIPVFQKS-----SRRLGPDGYRLVWQVDT  110 (126)
Q Consensus        78 ~~~l~~~~-~~~~~~~~-----~~~~~~~~~~l~~~~~~  110 (126)
                      .+.+.+.. ..+.....     .....++.+.|.|....
T Consensus        83 ~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~  121 (289)
T 3mjg_X           83 RLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD  121 (289)
T ss_dssp             EEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSC
T ss_pred             eEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCC
Confidence            56666542 22222111     22456788999998873

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.37  E-value=4.5e-12  Score=77.94  Aligned_cols=107  Identities=12%  Similarity=0.128  Sum_probs=72.7

Q ss_pred             eeccCC---ccEEEEEE-eeecCCCeeEEEECC--EEec-----cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPD---MRAEIICN-VYANPPAKVEWFRDG--TAIT-----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g---~~~~l~C~-~~~~p~~~~~w~~~~--~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +.+.+|   +.+.|.|. ..+.|.+.+.|++++  ....     ....+..     ...|.|..+...|.|.|+|.+.|.
T Consensus       142 ~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~  216 (331)
T 3u83_A          142 LRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQSLACIVNYH  216 (331)
T ss_dssp             EEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTCEEEEEEEET
T ss_pred             eeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE-----EEEEEEEeccccCCCEEEEEEecC
Confidence            345566   77999998 788999999999853  2211     1111111     136888889999999999999999


Q ss_pred             CceeEEEEEEEecCCCCeeccC---cceeCCCeeEEEEEEccCCcc
Q psy12132         72 LGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.....+.|.+...|......   .....++.+.|+|...+.++.
T Consensus       217 ~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  262 (331)
T 3u83_A          217 MDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPA  262 (331)
T ss_dssp             TEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCC
T ss_pred             CCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCC
Confidence            8887777777664333222221   113457889999999777554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.37  E-value=1.2e-12  Score=75.64  Aligned_cols=77  Identities=17%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             eccCCccEEEEEEe-eecCCCeeEEEECC--EEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          4 ITAPDMRAEIICNV-YANPPAKVEWFRDG--TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         4 ~~~~g~~~~l~C~~-~~~p~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+..|+.+.|.|.+ .+.|.+.+.|++++  ..+......    ......|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~  207 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLR  207 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEE
Confidence            35679999999999 88999999999953  333221111    111238999999999999999999999999988888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus       208 l~V~  211 (214)
T 3jz7_A          208 LDVV  211 (214)
T ss_dssp             ECCB
T ss_pred             EEEe
Confidence            8876

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.37  E-value=8.2e-12  Score=66.40  Aligned_cols=81  Identities=15%  Similarity=0.254  Sum_probs=58.2

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECCEEecc-------------CCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDGTAITL-------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      ++.+..|+++.|.|...+.  +...+.|++++..+..             ..++.+..   +..|.|.+++..|.|.|+|
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C   88 (117)
T 3q0h_A           12 NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP---GLGLTLQSLTVNDTGEYFC   88 (117)
T ss_dssp             CEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECS---TTCEEECSCCGGGCEEEEE
T ss_pred             CEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCC---ceEEEEeeCChhhCEEEEE
Confidence            4678899999999999762  2346899997654321             23444322   3479999999999999999


Q ss_pred             EEec-CCceeEEEEEEEecC
Q psy12132         67 QASN-NLGSSQQFIQLSGIP   85 (126)
Q Consensus        67 ~~~~-~~~~~~~~~~l~~~~   85 (126)
                      .+.+ ..|.....+.|.|..
T Consensus        89 ~v~~~~~g~~~~~~~L~V~~  108 (117)
T 3q0h_A           89 IYHTYPDGTYTGRIFLEVLE  108 (117)
T ss_dssp             EEEEETTCCEEEEEEEEEEC
T ss_pred             EEEECCCCCeEEEEEEEEEc
Confidence            9754 456777777777653

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.37  E-value=1.1e-11  Score=76.50  Aligned_cols=114  Identities=19%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             eccCCccEEEEEEeeecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      .+..|+++.|.|.+.+.+ .+.+.|++++..+...........   ..|.|.++.+.|.|.|+|..   .|...+...|.
T Consensus        17 ~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~   90 (325)
T 1n26_A           17 TSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLL   90 (325)
T ss_dssp             EECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEES---SEEEECSCCGGGCEEEEEES---SSSCSCEEEEE
T ss_pred             ECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcccccccccc---ceEEecccchhhCeEeEEEe---CCEEeeeEEEE
Confidence            346899999999988654 679999987754422111111222   37999999999999999993   45555555555


Q ss_pred             ec--CCCCeeccCcceeCCCeeEEEEEEccC-CcceeEEEEEEEe
Q psy12132         83 GI--PNIPVFQKSSRRLGPDGYRLVWQVDTY-SAIIQYLLKFRER  124 (126)
Q Consensus        83 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~r~~  124 (126)
                      +.  +..|.+.+... .....+.++|.+... .....|.+.|++.
T Consensus        91 V~~pP~~P~l~c~~~-~~~~~~~c~W~~~~~~~~~~~y~l~~~~~  134 (325)
T 1n26_A           91 VDVPPEEPQLSCFRK-SPLSNVVCEWGPRSTPSLTTKAVLLVRKF  134 (325)
T ss_dssp             ECCCCCCCCCEEEBS-STTSCEEEEECCSSCCCTTCEEEEEEEEE
T ss_pred             eccCCCCCceeEEee-cCCCcEEEEECCCCCCCCCceEEEEEEEc
Confidence            43  33333222111 123467888876322 2346788888864

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=2e-12  Score=74.70  Aligned_cols=81  Identities=23%  Similarity=0.547  Sum_probs=59.6

Q ss_pred             eccCCccEEEEEE-eeecCCCeeEEEECCE-EeccCCcE-------EEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          4 ITAPDMRAEIICN-VYANPPAKVEWFRDGT-AITLGGRI-------DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         4 ~~~~g~~~~l~C~-~~~~p~~~~~w~~~~~-~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      .+..|+.+.|.|. +.+.|.+.+.|++++. .+......       ..........|.|.++...|.|.|+|.+.|..|.
T Consensus       115 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  194 (212)
T 1f97_A          115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT  194 (212)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             ccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCC
Confidence            4678999999999 7889999999999998 66543221       1112223347999999999999999999999887


Q ss_pred             e--EEEEEEEec
Q psy12132         75 S--QQFIQLSGI   84 (126)
Q Consensus        75 ~--~~~~~l~~~   84 (126)
                      .  ...+.|.+.
T Consensus       195 ~~~s~~~~l~V~  206 (212)
T 1f97_A          195 AMRSEAAHMDAV  206 (212)
T ss_dssp             CEECCCEEEEEE
T ss_pred             ccccceEEEEEE
Confidence            7  445555543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.37  E-value=5.3e-11  Score=69.51  Aligned_cols=112  Identities=14%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---e---c-------------cCCcEEEEec--CCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I---T-------------LGGRIDMHVS--SEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~---~-------------~~~~~~~~~~--~~~~~l~i~~~   56 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++..  ..   +   .             ...++.+..+  .....|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL   88 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence            45688999999999998643  5789998732  11   1   0             1245555433  34568999999


Q ss_pred             CCCCCEEEEEEEecCC--ceeEEEEEEEec---CCCCeec-c-CcceeCCCeeEEEEEEccCCc
Q psy12132         57 KDTDFGNYMCQASNNL--GSSQQFIQLSGI---PNIPVFQ-K-SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        57 ~~~d~g~y~C~~~~~~--~~~~~~~~l~~~---~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +..|.|.|.|.+.+..  ........+.+.   ..+|.+. . ......++.+.|.|.+.+..|
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~~P  152 (221)
T 3m8o_H           89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFP  152 (221)
T ss_dssp             CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEEBS
T ss_pred             CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEeeEC
Confidence            9999999999998753  112222334432   2233322 1 111146788999999977433

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.37  E-value=4e-11  Score=71.31  Aligned_cols=108  Identities=10%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce--eEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~l   81 (126)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+...... .........|.|.++...|.|.|+|.+.+..+.  .+..+.|
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L   94 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   94 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEE
Confidence            4678999999999864 45689999998765311000 001123458999999999999999998775332  2334444


Q ss_pred             Eec--CCCCeeccC--cceeCCCeeEEEEEEccCCc
Q psy12132         82 SGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.  ..+|.+...  .....++.+.|.|...+..+
T Consensus        95 ~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~  130 (242)
T 1p6f_A           95 VVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS  130 (242)
T ss_dssp             EEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCS
T ss_pred             EeecccCCCceEccCCCccCCCCcEEEEEecCCCCC
Confidence            443  233433321  23457899999999865543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.36  E-value=1.3e-11  Score=72.57  Aligned_cols=111  Identities=13%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---e---c-----------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I---T-----------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~---~-----------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +   .           ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (227)
T 1mju_H            9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (227)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCc
Confidence            45688999999999998776  6789999853  11   1   0           1246655432  3457899999999


Q ss_pred             CCCEEEEEEEecCCce-eEEEEEEEecC---CCCeec-cCc--ceeCCCeeEEEEEEccCC
Q psy12132         59 TDFGNYMCQASNNLGS-SQQFIQLSGIP---NIPVFQ-KSS--RRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~-~~~~~~l~~~~---~~~~~~-~~~--~~~~~~~~~l~~~~~~~~  112 (126)
                      .|.|.|.|.+.+..+. ......|.|..   .+|... ..+  ....++.+.|+|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~  149 (227)
T 1mju_H           89 DDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYF  149 (227)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEB
T ss_pred             ccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEe
Confidence            9999999999875321 11223444432   223222 111  123577899999997653

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.36  E-value=7.2e-12  Score=73.12  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=59.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-eEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l   81 (126)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....         ..|.|.++...|.|.|+|.+.|..|. ....+.|
T Consensus       128 ~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l  198 (218)
T 3k0w_A          128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI  198 (218)
T ss_dssp             EEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEE
T ss_pred             eeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEE
Confidence            4577899999999999999999999999987764322         27999999999999999999998776 4455555


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       199 ~V~  201 (218)
T 3k0w_A          199 IID  201 (218)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            553

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.36  E-value=5.4e-12  Score=80.61  Aligned_cols=110  Identities=11%  Similarity=0.041  Sum_probs=76.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCee-----EEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKV-----EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ++.+..|+++.|.|.+.+ |.|.+     .|++++..+.. .+        ...|.|.++.. |.| |+|.+.+..+...
T Consensus         8 ~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~~--------~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~   75 (450)
T 1z7z_I            8 KVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-NN--------RKVYELSNVQE-DSQ-PMCYSNCPDGQST   75 (450)
T ss_dssp             EEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-TT--------EEEEEEEEECS-CBC-CEEEEEETTEEEE
T ss_pred             ceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-CC--------ceEEEEEeccc-CCe-eEEEEeCCCCcce
Confidence            456788999999999998 88888     89887653321 11        22688888877 999 9999987766666


Q ss_pred             EEEEEEecCCCCeeccC---cceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         77 QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        77 ~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      ..+.|.+...|......   .....++.+.|.|...+.++...+.+.|.+
T Consensus        76 ~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k  125 (450)
T 1z7z_I           76 AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR  125 (450)
T ss_dssp             EECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE
T ss_pred             eEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEee
Confidence            66677665444443222   234578899999999887655333344443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.36  E-value=1.1e-11  Score=74.91  Aligned_cols=112  Identities=13%  Similarity=0.129  Sum_probs=71.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec--------------cCCcEEEEec-CCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT--------------LGGRIDMHVS-SEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~--------------~~~~~~~~~~-~~~~~l~i~~~~~~d~   61 (126)
                      ++.+.+|+++.|.|.+.+.+.+.+.|+++.  .   .+.              ...++.+..+ .....|.|.+++..|.
T Consensus        33 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~  112 (279)
T 2wbj_D           33 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS  112 (279)
T ss_dssp             EEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGC
T ss_pred             eEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCC
Confidence            356888999999999987788899999853  1   110              1245555442 3456899999999999


Q ss_pred             EEEEEEEecCCc------eeEEEEEEEecC-----CCCeecc-Ccc---eeCCCeeEEEEEEccCCc
Q psy12132         62 GNYMCQASNNLG------SSQQFIQLSGIP-----NIPVFQK-SSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        62 g~y~C~~~~~~~------~~~~~~~l~~~~-----~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.|.+.+..+      .......+.|..     .+|.+.. .+.   ...++.+.|+|.+.+..|
T Consensus       113 G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  179 (279)
T 2wbj_D          113 SFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  179 (279)
T ss_dssp             EEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred             EEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence            999999988321      111122344332     2333322 111   113568899999977644

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.36  E-value=3.7e-11  Score=69.99  Aligned_cols=110  Identities=16%  Similarity=0.289  Sum_probs=70.5

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---ec-------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT-------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +.             ...++.+..+  .....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (215)
T ss_dssp             CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred             CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence            45688999999999998764  4789999852  11   10             1245555432  23568999999999


Q ss_pred             CCEEEEEEEecCCce---eEEEEEEEecC---CCCe-eccC--cceeCCCeeEEEEEEccC
Q psy12132         60 DFGNYMCQASNNLGS---SQQFIQLSGIP---NIPV-FQKS--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        60 d~g~y~C~~~~~~~~---~~~~~~l~~~~---~~~~-~~~~--~~~~~~~~~~l~~~~~~~  111 (126)
                      |.|.|.|.+.+..+.   ......|.+..   .+|. ....  .....++.+.|+|.+.+.
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~  149 (215)
T 1c5d_H           89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGY  149 (215)
T ss_dssp             GCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeee
Confidence            999999999875321   11223444432   2232 2211  112457789999999776

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.35  E-value=2.4e-11  Score=72.96  Aligned_cols=110  Identities=14%  Similarity=0.204  Sum_probs=70.8

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---ec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +.              ...++.+..+  .....|.|.+++.
T Consensus        15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   94 (261)
T 2xqy_G           15 AELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS   94 (261)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence            35688999999999998776  5789999852  11   10              1246655443  2456899999999


Q ss_pred             CCCEEEEEEEecCCc---eeEEEEEEEecC---CCCeec-cCc--ceeCCCeeEEEEEEccC
Q psy12132         59 TDFGNYMCQASNNLG---SSQQFIQLSGIP---NIPVFQ-KSS--RRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~---~~~~~~~l~~~~---~~~~~~-~~~--~~~~~~~~~l~~~~~~~  111 (126)
                      .|.|.|.|.+.+..+   .......|.|..   .+|... ..+  ....++.+.|.|.+.+.
T Consensus        95 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~  156 (261)
T 2xqy_G           95 EDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGY  156 (261)
T ss_dssp             GGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEE
T ss_pred             ccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeE
Confidence            999999999998532   111223444432   223222 111  12357789999999765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.35  E-value=1.5e-12  Score=80.17  Aligned_cols=86  Identities=22%  Similarity=0.463  Sum_probs=65.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE----CCEEeccCCc--EEEEe-------cCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR----DGTAITLGGR--IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~----~~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ..+..|+++.|.|.+.+.|.|.+.|++    ++..+.....  +....       ......|.|.++...|.|.|+|.+.
T Consensus       232 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  311 (334)
T 1ry7_B          232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG  311 (334)
T ss_dssp             EEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEE
T ss_pred             eEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEe
Confidence            456779999999999999999999999    5555543221  11111       1112379999999999999999999


Q ss_pred             cCCceeEEEEEEEecCCCC
Q psy12132         70 NNLGSSQQFIQLSGIPNIP   88 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~   88 (126)
                      |..|.....+.|.+...++
T Consensus       312 N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          312 NSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             ESSCCEEEEEEEEEECSCC
T ss_pred             CCCCeEEEEEEEEEEECCC
Confidence            9999999888888765544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.35  E-value=4e-11  Score=73.37  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             ceeccCCccEEEEEEeeecCCC-----eeEEEECCEEe-------------ccCCcEEEEec-----CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-----KVEWFRDGTAI-------------TLGGRIDMHVS-----SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-----~~~w~~~~~~~-------------~~~~~~~~~~~-----~~~~~l~i~~~~~   58 (126)
                      ++.+..|+++.|.|.+.+.+.+     .+.|+|++...             ....++.+...     ..+.+|.|.++..
T Consensus         9 ~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~   88 (313)
T 4fqp_A            9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV   88 (313)
T ss_dssp             EECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCG
T ss_pred             EEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCCh
Confidence            4567889999999999876655     38999976421             11223332111     1235799999999


Q ss_pred             CCCEEEEEEEe-cCCceeEEEEEEEecCCCCeec--cCcceeCCCeeEEEEEEccC
Q psy12132         59 TDFGNYMCQAS-NNLGSSQQFIQLSGIPNIPVFQ--KSSRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        59 ~d~g~y~C~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~  111 (126)
                      .|.|.|+|.+. +..+.....+.|.+...|....  .......+....+.|...+.
T Consensus        89 ~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~  144 (313)
T 4fqp_A           89 EDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG  144 (313)
T ss_dssp             GGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEE
T ss_pred             hhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCc
Confidence            99999999876 4455666666666543333222  12222345567788877544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.35  E-value=5.3e-12  Score=73.01  Aligned_cols=81  Identities=12%  Similarity=0.072  Sum_probs=59.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ..+..++.+.+.|.+.+.|.|.+.|++++..+........... ...+.|.|..+...|.|.|+|.+.|..|.....+.+
T Consensus       128 ~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~  207 (218)
T 4frw_A          128 LEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITH  207 (218)
T ss_dssp             EETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEE
T ss_pred             eeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEE
Confidence            4556788999999999999999999998866543322211100 012479999999999999999999998877665555


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .+
T Consensus       208 ~v  209 (218)
T 4frw_A          208 IL  209 (218)
T ss_dssp             EC
T ss_pred             EE
Confidence            43

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.34  E-value=1.6e-12  Score=75.88  Aligned_cols=111  Identities=16%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             ceeccCCccEEEEEEeeecCC-----CeeEEEECCEEe-------------ccCCcEEEEec---CCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP-----AKVEWFRDGTAI-------------TLGGRIDMHVS---SEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-----~~~~w~~~~~~~-------------~~~~~~~~~~~---~~~~~l~i~~~~~~d   60 (126)
                      ++.+.+|+++.|.|.+.+.+.     +.+.|++++...             ....+..+...   .+...|.|.++...|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            567889999999999987654     689999976321             01123322210   114579999999999


Q ss_pred             CEEEEEEEecCCceeEEEEEEEec--CCCCeeccCc--ceeCCCeeEEEEEE-ccCCc
Q psy12132         61 FGNYMCQASNNLGSSQQFIQLSGI--PNIPVFQKSS--RRLGPDGYRLVWQV-DTYSA  113 (126)
Q Consensus        61 ~g~y~C~~~~~~~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~  113 (126)
                      .|.|+|.+.+. +.....+.|.+.  +..|.+....  ....++.+.|.|.+ .+.++
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~  140 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPE  140 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSC
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCC
Confidence            99999999875 233344444433  2333333222  22357889999999 55443

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.34  E-value=4.3e-11  Score=69.49  Aligned_cols=69  Identities=22%  Similarity=0.411  Sum_probs=51.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec-------cCCcEEEEec---CCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT-------LGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~-------~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|+++.|.|.+.+.+ +.+.|++..     ..+.       ...++....+   .....|.|.+++..|.|.|.|
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (207)
T 1ypz_E           10 ALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC   88 (207)
T ss_dssp             EEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred             eEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            35788999999999997543 589999842     1121       2356666544   445789999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+.+.
T Consensus        89 ~~~~~   93 (207)
T 1ypz_E           89 AADTW   93 (207)
T ss_dssp             EEECB
T ss_pred             EEecC
Confidence            99875

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.34  E-value=9.7e-12  Score=65.50  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEe----------------c---cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAI----------------T---LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~----------------~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      ..+.+|+++.|.|.......+.+.|+|.....                .   ..+|..+..++   +|.|.++...|.|.
T Consensus        10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ng---SL~I~nvt~~D~G~   86 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA---SLLIQNIIQNDAGF   86 (111)
T ss_dssp             SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTS---CEEECSCCGGGCEE
T ss_pred             ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCC---cEEEccCcccCCeE
Confidence            46788999999998643334469999865211                0   13466665555   89999999999999


Q ss_pred             EEEEEecCCc-eeEEEEEEEec
Q psy12132         64 YMCQASNNLG-SSQQFIQLSGI   84 (126)
Q Consensus        64 y~C~~~~~~~-~~~~~~~l~~~   84 (126)
                      |+|.+.+..+ ...+.+.|.|.
T Consensus        87 Ytc~v~~~~~~~~~~~~~L~V~  108 (111)
T 2qsq_A           87 YTLHVIKSDLVNEEATGQFRVY  108 (111)
T ss_dssp             EEEEEEETTSCCEEEEEEEEEE
T ss_pred             EEEEEEeCCCcEEEEEEEEEEe
Confidence            9999998755 45666666654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.34  E-value=1.7e-10  Score=68.06  Aligned_cols=112  Identities=17%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Eec-------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++..  .   .+.             ...++.+..+  .....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence            45678999999999998764  5789999842  1   110             1246665542  34568999999999


Q ss_pred             CCEEEEEEEe--cCCc----eeEEEEEEEecC---CCCeec-cCc--ceeCC-CeeEEEEEEccCCc
Q psy12132         60 DFGNYMCQAS--NNLG----SSQQFIQLSGIP---NIPVFQ-KSS--RRLGP-DGYRLVWQVDTYSA  113 (126)
Q Consensus        60 d~g~y~C~~~--~~~~----~~~~~~~l~~~~---~~~~~~-~~~--~~~~~-~~~~l~~~~~~~~~  113 (126)
                      |.|.|.|.+.  +..+    .......|.|..   .+|... ..+  ....+ +.+.|.|.+.+..|
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P  155 (232)
T 1dn0_B           89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLP  155 (232)
T ss_dssp             GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBS
T ss_pred             cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeC
Confidence            9999999998  3211    111223455432   223222 111  12245 78999999976633

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.34  E-value=9.7e-12  Score=72.71  Aligned_cols=84  Identities=25%  Similarity=0.551  Sum_probs=63.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE----CCEEeccCCc--EEEEe-----cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR----DGTAITLGGR--IDMHV-----SSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~----~~~~~~~~~~--~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..+..|+.+.|.|.+.+.|.+.+.|++    ++..+.....  .....     ......|.|.++...|.|.|+|.+.|.
T Consensus       128 ~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  207 (231)
T 3ojm_B          128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY  207 (231)
T ss_dssp             EEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             eEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEec
Confidence            456679999999999999999999999    6665543321  11111     111246999999999999999999999


Q ss_pred             CceeEEEEEEEecCC
Q psy12132         72 LGSSQQFIQLSGIPN   86 (126)
Q Consensus        72 ~~~~~~~~~l~~~~~   86 (126)
                      .|.....+.|.+...
T Consensus       208 ~g~~~~~~~l~V~~~  222 (231)
T 3ojm_B          208 IGQANQSAWLTVLPK  222 (231)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             cceEeeEEEEEEecC
Confidence            998888888877543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.33  E-value=1.1e-11  Score=79.30  Aligned_cols=109  Identities=12%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             ccCCccEEEEEEeeecC----CCeeEEEECCEEeccCCc--EEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYANP----PAKVEWFRDGTAITLGGR--IDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p----~~~~~w~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +.+|+++.|.|.+.+.+    .+.+.|++++..+.....  .....++   ....|.|.++...|.|.|+|.+.|..+..
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            46799999999999874    358999999987653221  1111111   23479999999999999999999987765


Q ss_pred             EEEEEEEe---cCCCCeecc-Cc--ceeCCCeeEEEEEEccCCc
Q psy12132         76 QQFIQLSG---IPNIPVFQK-SS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 ~~~~~l~~---~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .....+..   ...+|.+.. ..  ....+..+.|.|...+..|
T Consensus       332 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P  375 (444)
T 1igt_B          332 PIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMP  375 (444)
T ss_dssp             CEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBS
T ss_pred             ceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeC
Confidence            32223321   223343321 11  1223445999999977533

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.33  E-value=2.7e-11  Score=68.58  Aligned_cols=72  Identities=19%  Similarity=0.310  Sum_probs=56.4

Q ss_pred             eeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      +.+..|+.+.|.|.+.+.|.| .+.|++++..+.....       ....|.|.++  .|.|.|+|.+.|..|... ..+.
T Consensus       108 ~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~  178 (182)
T 1rhf_A          108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTAT  178 (182)
T ss_dssp             EEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEE
T ss_pred             eEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEE
Confidence            457789999999999999999 9999999987753321       2347888888  588999999999988764 3555


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.+
T Consensus       179 l~V  181 (182)
T 1rhf_A          179 VHL  181 (182)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.33  E-value=4.4e-12  Score=83.45  Aligned_cols=106  Identities=16%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             eeccCCccEEEEEEe-eecCCCeeEEEECCEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      +.+.+|++++|.|.+ .+.|.+.+.|++++..+.            ...+.....++   +|.|.+++..|.|.|+|.+.
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEEEE
Confidence            567889999999998 778889999999764211            01233333333   79999999999999999999


Q ss_pred             cCCcee-EEEEEEEec--CCCCeeccCcc-eeC-CCeeEEEEEEccC
Q psy12132         70 NNLGSS-QQFIQLSGI--PNIPVFQKSSR-RLG-PDGYRLVWQVDTY  111 (126)
Q Consensus        70 ~~~~~~-~~~~~l~~~--~~~~~~~~~~~-~~~-~~~~~l~~~~~~~  111 (126)
                      +..+.. ...+.|.|.  +..|.+..... ... ...+.|+|.+.+.
T Consensus       453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~  499 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGS  499 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEE
T ss_pred             cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCC
Confidence            988766 566666653  33343333222 222 3344679998764

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.33  E-value=2.1e-11  Score=65.54  Aligned_cols=82  Identities=17%  Similarity=0.349  Sum_probs=58.9

Q ss_pred             eeccCCccEEEEEEeeecCC---CeeEEEECCEE--e---------c------cCCcEEEEecC---CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP---AKVEWFRDGTA--I---------T------LGGRIDMHVSS---EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~---~~~~w~~~~~~--~---------~------~~~~~~~~~~~---~~~~l~i~~~~~~   59 (126)
                      +....|++++|.|.+...+.   ..+.|+|++..  +         .      ...+..+..+.   ++.+|.|.+++..
T Consensus        15 v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~   94 (125)
T 4gos_A           15 SAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLT   94 (125)
T ss_dssp             EEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGG
T ss_pred             EEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChH
Confidence            45678999999999864333   36899985421  1         0      01233332221   2468999999999


Q ss_pred             CCEEEEEEEecCCceeEEEEEEEec
Q psy12132         60 DFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        60 d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      |.|.|.|.+.+..+...+.+.|.|-
T Consensus        95 D~G~Y~C~v~~~~g~~~~~v~LkVG  119 (125)
T 4gos_A           95 DAGTYKCYIITSKGKGNANLEYKTG  119 (125)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HCEEEEEEEEeCCCeEEEEEEEEEC
Confidence            9999999999999999998888874

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.33  E-value=4.2e-11  Score=71.95  Aligned_cols=111  Identities=15%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec-c-C----------C-cEEEEe-cCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT-L-G----------G-RIDMHV-SSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~-~-~----------~-~~~~~~-~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|.+.+ +.+.+.|++.  +..   +. . .          . ++.... ......|.|.+++..|.|
T Consensus        36 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G  114 (270)
T 3qib_D           36 YLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSA  114 (270)
T ss_dssp             EEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCE
T ss_pred             eEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCe
Confidence            367889999999999864 7789999982  111   10 0 0          0 444432 234578999999999999


Q ss_pred             EEEEEEecCC----ceeEEEEEEEecC-----CCCeec-cCcc---eeCCCeeEEEEEEccCCc
Q psy12132         63 NYMCQASNNL----GSSQQFIQLSGIP-----NIPVFQ-KSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        63 ~y~C~~~~~~----~~~~~~~~l~~~~-----~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.+.+..    ........+.+..     .+|... ..+.   ...++.+.|+|...+..|
T Consensus       115 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  178 (270)
T 3qib_D          115 LYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  178 (270)
T ss_dssp             EEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             EEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeC
Confidence            9999998632    1122222344332     123222 1111   123678999999977433

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=79.77  Aligned_cols=79  Identities=23%  Similarity=0.263  Sum_probs=61.5

Q ss_pred             eccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      .+..|+.+.|.|.+.|.|.| .+.|++++..+.....   .  .....+.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       223 ~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~---~--~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~  297 (308)
T 4fom_A          223 WFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL---A--SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIY  297 (308)
T ss_dssp             EETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB---C--STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred             eeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE---E--cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEE
Confidence            45668899999999999988 6999998866543321   1  1223677888999999999999999999988888887


Q ss_pred             ecCCC
Q psy12132         83 GIPNI   87 (126)
Q Consensus        83 ~~~~~   87 (126)
                      |...|
T Consensus       298 V~~~P  302 (308)
T 4fom_A          298 ISDPP  302 (308)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            75443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.32  E-value=1.8e-10  Score=68.11  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=70.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec------------cCCcEEEEe-cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT------------LGGRIDMHV-SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~------------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+. .+.+.+.|++++  .   .+.            ...++.+.. ......|.|.+++..|.|.
T Consensus         8 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   86 (238)
T 1bec_A            8 NKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSV   86 (238)
T ss_dssp             EEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEE
T ss_pred             eeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEE
Confidence            46788999999999985 467899999853  1   110            124554443 2345689999999999999


Q ss_pred             EEEEEecCCc-----eeEEEEEEEecC-----CCCeec-cCcc---eeCCCeeEEEEEEccCCc
Q psy12132         64 YMCQASNNLG-----SSQQFIQLSGIP-----NIPVFQ-KSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        64 y~C~~~~~~~-----~~~~~~~l~~~~-----~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.+.+..+     .......|.+..     .+|... ..+.   ...++.+.|.|.+.+..|
T Consensus        87 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P  150 (238)
T 1bec_A           87 YFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFP  150 (238)
T ss_dssp             EEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBS
T ss_pred             EEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeC
Confidence            9999988631     111122344322     233332 2111   124678899999977533

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.31  E-value=1.5e-11  Score=65.03  Aligned_cols=82  Identities=21%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             eeccCCccEEEEEEee-ecCCCe----eEEEECCEE--e-----------ccCCcEEEEecC-----CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVY-ANPPAK----VEWFRDGTA--I-----------TLGGRIDMHVSS-----EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~-~~p~~~----~~w~~~~~~--~-----------~~~~~~~~~~~~-----~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+. +.+.+.    +.|++++..  +           ....++.+....     ...+|.|.+++..
T Consensus        10 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~   89 (118)
T 3udw_C           10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE   89 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGG
T ss_pred             EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChH
Confidence            5678899999999994 444443    899997421  1           112334332211     1458999999999


Q ss_pred             CCEEEEEEEec-CCceeEEEEEEEec
Q psy12132         60 DFGNYMCQASN-NLGSSQQFIQLSGI   84 (126)
Q Consensus        60 d~g~y~C~~~~-~~~~~~~~~~l~~~   84 (126)
                      |.|.|.|.+.+ ..+.......|.|.
T Consensus        90 D~G~Y~C~v~~~~~~~~~~~~~L~V~  115 (118)
T 3udw_C           90 DEGNYTCLFVTFPQGSRSVDIWLRVL  115 (118)
T ss_dssp             GCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HCeEEEEEEEECCCCCccceEEEEEE
Confidence            99999999988 66666677777664

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.31  E-value=1.3e-11  Score=72.78  Aligned_cols=109  Identities=11%  Similarity=0.090  Sum_probs=68.0

Q ss_pred             ccCCccEEEEEEeeec-CC-C-eeEEEECCEEe-ccCCcEEEE-ecC---CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          5 TAPDMRAEIICNVYAN-PP-A-KVEWFRDGTAI-TLGGRIDMH-VSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~-~-~~~w~~~~~~~-~~~~~~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +..|+++.|.|.+.+. |. | .+.|++++..+ ......... .++   ....|.|.++...|.|.|+|.+.+..+...
T Consensus        25 v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~  104 (231)
T 2w59_A           25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLP  104 (231)
T ss_dssp             HHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSSC
T ss_pred             cccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCCc
Confidence            4689999999999885 63 4 99999988765 222211111 111   124689999988999999999998765544


Q ss_pred             EEEEEEec---CCCCee-ccCc--ceeCCCeeEEEEEEccCCc
Q psy12132         77 QFIQLSGI---PNIPVF-QKSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        77 ~~~~l~~~---~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      ..+.+...   ..+|.. ...+  ....+..+.|+|.+.+..|
T Consensus       105 ~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P  147 (231)
T 2w59_A          105 LSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRP  147 (231)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             eEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccC
Confidence            44444321   123322 2111  1122457899999977544

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.31  E-value=3.7e-11  Score=63.00  Aligned_cols=70  Identities=16%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++..     ..+.         ...++..........|.|.+++..|.|.|.|.
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   91 (109)
T 2q20_A           12 SLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCEEEEEE
Confidence            467889999999999987777899999853     1121         13466655444567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        92 ~~~~   95 (109)
T 2q20_A           92 QYDN   95 (109)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            8764

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.31  E-value=3e-11  Score=63.28  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=52.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++..     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (108)
T 1qfw_M           10 SMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFADYHCG   89 (108)
T ss_dssp             CEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSEEEEE
T ss_pred             eEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEEEEEE
Confidence            467889999999999987777789999843     1121         12355544334456899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        90 ~~~~   93 (108)
T 1qfw_M           90 QTYN   93 (108)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            8874

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.31  E-value=2.3e-11  Score=72.19  Aligned_cols=109  Identities=13%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             ccCCccEEEEEEeeec---CCC-eeEEEECCEEeccCCc-E-EEEecC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYAN---PPA-KVEWFRDGTAITLGGR-I-DMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~---p~~-~~~w~~~~~~~~~~~~-~-~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +.+|+++.|.|.+.+.   |.+ .+.|++++..+..... . ....++   ....|.|.+++..|.|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            5689999999999877   766 8999998755432100 0 000111   12479999999999999999999887654


Q ss_pred             EEEEEEE---ecCCCCeec-cCc--ceeCCCeeEEEEEEccCCc
Q psy12132         76 QQFIQLS---GIPNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 ~~~~~l~---~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .....+.   ....+|.+. ...  ....+..+.|+|.+.+..|
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P  152 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYP  152 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeEC
Confidence            2222221   112233322 111  1124567999999977544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=5.2e-12  Score=81.09  Aligned_cols=79  Identities=25%  Similarity=0.374  Sum_probs=62.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC-CEEeccC---CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ++.+.+|+++.|.|.+.  |.|.+.|+++ +..+...   .++....++   +|.|.+++..|.|.|+|.+.|..|...+
T Consensus       361 ~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~  435 (452)
T 3zyi_A          361 DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNA  435 (452)
T ss_dssp             CEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTS---CEECSSCCTTCCEEEEEEEECSSCEEEE
T ss_pred             cccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCC---eEEEeecCHHHCEEEEEEEEcCCCcEEE
Confidence            35678899999999987  8999999994 4444322   244444444   6999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy12132         78 FIQLSGIP   85 (126)
Q Consensus        78 ~~~l~~~~   85 (126)
                      .+.+.|..
T Consensus       436 ~~~l~v~~  443 (452)
T 3zyi_A          436 SAYLNVST  443 (452)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEEEc
Confidence            88888753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.30  E-value=3.8e-11  Score=81.09  Aligned_cols=111  Identities=12%  Similarity=0.073  Sum_probs=58.3

Q ss_pred             eeccCCccEEEEEEeeec--CCCeeEEEECCEEeccCCcEEE--------EecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          3 SITAPDMRAEIICNVYAN--PPAKVEWFRDGTAITLGGRIDM--------HVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +.+.+|+++.|.|.+.+.  +.+.+.|++++..+........        ........|.|.++...|.|.|+|.+.+..
T Consensus       234 ~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  313 (772)
T 3v2a_R          234 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL  313 (772)
T ss_dssp             EEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSS
T ss_pred             eEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCC
Confidence            467889999999999874  4568999998876543222111        011123579999999999999999999988


Q ss_pred             ceeEEEEEEEecCCCCeecc-----CcceeCCCeeEEEEEEccCCc
Q psy12132         73 GSSQQFIQLSGIPNIPVFQK-----SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.....+.+.+...|.....     ......++.+.|.|...+.++
T Consensus       314 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~  359 (772)
T 3v2a_R          314 MTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP  359 (772)
T ss_dssp             CEEEEEEEEEEECCCC------------------------------
T ss_pred             cceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC
Confidence            87777777776543322111     122346778899999877543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.30  E-value=5.1e-11  Score=69.40  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=57.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEEC-CEEeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+..|+.+.|.|.+.|.|.|.+.|+++ +..+..........  .+.........+...|.|.|+|.+.|..|.......
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~  206 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAE  206 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEE
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEE
Confidence            456799999999999999999999998 55543322211111  111122333345578999999999999999988888


Q ss_pred             EEecCCC
Q psy12132         81 LSGIPNI   87 (126)
Q Consensus        81 l~~~~~~   87 (126)
                      +.+...|
T Consensus       207 l~v~~~p  213 (222)
T 3sbw_C          207 LVIPELP  213 (222)
T ss_dssp             EECCCC-
T ss_pred             EEecCCc
Confidence            8875433

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.30  E-value=5.3e-11  Score=70.10  Aligned_cols=121  Identities=13%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC-----EEec-------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG-----TAIT-------------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~-----~~~~-------------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      .+.+.+|+++.|.|.+.+.  +.+.+.|++..     ..+.             ...++.+..+.  ....|.|.+++..
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (230)
T 1ypz_F           10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (230)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChh
Confidence            3567899999999999764  56789999842     1110             12455554322  4568999999999


Q ss_pred             CCEEEEEEEecC--Cc--eeEEEEEEEecC--------CCCe-eccCcce---eCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         60 DFGNYMCQASNN--LG--SSQQFIQLSGIP--------NIPV-FQKSSRR---LGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        60 d~g~y~C~~~~~--~~--~~~~~~~l~~~~--------~~~~-~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      |.|.|.|.+.+.  ..  .......|.|.+        .+|. ....+..   ..++.+.|+|.+.+..|. ...+.|.+
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~-~~~v~W~~  168 (230)
T 1ypz_F           90 DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPD-VIRVYWKE  168 (230)
T ss_dssp             GCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSC-CCEEEEEC
T ss_pred             hCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCC-CeEEEEEc
Confidence            999999999874  11  111222344431        1111 1111111   135678999999766442 12455554

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.30  E-value=9.9e-11  Score=61.69  Aligned_cols=85  Identities=11%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             ceeccCCccEEEEEEeeecCC-CeeEEEECCE-----Eec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPP-AKVEWFRDGT-----AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~-----~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y   64 (126)
                      .+.+.+|+++.|.|...+... ..+.|++...     .+.         ...++.+..  ......|.|.+++..|+|.|
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y   89 (113)
T 1zox_A           10 EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIY   89 (113)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEE
Confidence            357889999999999975433 3699998641     121         124555542  23456899999999999999


Q ss_pred             EEEEecCCceeEEEEEEEecCC
Q psy12132         65 MCQASNNLGSSQQFIQLSGIPN   86 (126)
Q Consensus        65 ~C~~~~~~~~~~~~~~l~~~~~   86 (126)
                      .|.+.+........+.|.|.+.
T Consensus        90 ~C~v~~~~~~~~~~v~L~V~~~  111 (113)
T 1zox_A           90 WCGITKGGLDPMFKVTVNIGPV  111 (113)
T ss_dssp             EEEECCSSSCCEEEEEEEEECC
T ss_pred             EEeeEcCCCCccEEEEEEEEcC
Confidence            9999887555567777777543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.30  E-value=2.8e-11  Score=70.55  Aligned_cols=82  Identities=17%  Similarity=0.138  Sum_probs=59.8

Q ss_pred             eccCCccEEEEEEe-eecCCCeeEEEE-CCEEeccCCcEEEE--ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          4 ITAPDMRAEIICNV-YANPPAKVEWFR-DGTAITLGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         4 ~~~~g~~~~l~C~~-~~~p~~~~~w~~-~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      .+..|+.+.|.|.+ .+.|.+.+.|++ ++..+.........  ..+....|.+.++...|.|.|+|.+.|..|.....+
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  200 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHG  200 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEE
Confidence            35578999999999 788999999998 44444322222222  122234588999999999999999999999998888


Q ss_pred             EEEecC
Q psy12132         80 QLSGIP   85 (126)
Q Consensus        80 ~l~~~~   85 (126)
                      .+.+..
T Consensus       201 ~l~V~~  206 (222)
T 4i0k_A          201 SVTITG  206 (222)
T ss_dssp             EEECCC
T ss_pred             EEEEeC
Confidence            888753

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.30  E-value=5.3e-11  Score=62.21  Aligned_cols=70  Identities=16%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|++++|.|.+.+.+.+.+.|++..     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (107)
T 1i8k_A           10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL   89 (107)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEE
Confidence            467889999999999987777889999842     1121         13466655445567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        90 ~~~~   93 (107)
T 1i8k_A           90 QSFN   93 (107)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            8764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.29  E-value=3.1e-11  Score=72.36  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Eec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45788999999999998765  5789999842  1   110              1246655543  3456899999999


Q ss_pred             CCCEEEEEEEecCCc----------e---eEEEEEEEecC---CCCeec-cCc--ceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLG----------S---SQQFIQLSGIP---NIPVFQ-KSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~----------~---~~~~~~l~~~~---~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..|          .   ......|.|..   .+|... ..+  ....++.+.|.|.+.+..|
T Consensus        89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            999999999988653          1   11223445432   233322 111  1235677899999876533

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.29  E-value=2.6e-11  Score=70.27  Aligned_cols=55  Identities=22%  Similarity=0.474  Sum_probs=44.4

Q ss_pred             cCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ..|+++.|.|.+   |.+.+.|+|++..+...       ......|.|.++...|.|.|+|.+.+
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecC
Confidence            579999999998   78899999999876431       11223799999999999999999655

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.29  E-value=1.3e-12  Score=64.96  Aligned_cols=57  Identities=16%  Similarity=0.472  Sum_probs=46.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecC-CCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~   70 (126)
                      ..+..|++++|.|.+.+.|.  +.|+|++..+...      ..   ..|.|.++ ...|+|.|+|.+.+
T Consensus         9 ~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~------~~---~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            9 KVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK------HD---KHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             EEEEETTEEEEECSSCCCSS--CEEEETTEECTTC------CS---SCCBCCSCCTTTTCSCEEEECSS
T ss_pred             eEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC------CC---CEEEECccCccCcCEEEEEEEcc
Confidence            45677999999999998873  9999999887543      11   26999996 78999999999875

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.28  E-value=6e-11  Score=63.30  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=54.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++..  .   .+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (120)
T 1mqk_L           10 SLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQ   89 (120)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence            467889999999999987777899999842  1   111         13466655444567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        90 ~~~~   93 (120)
T 1mqk_L           90 HHYG   93 (120)
T ss_dssp             ECSS
T ss_pred             EEeC
Confidence            8874

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.28  E-value=7.1e-11  Score=70.41  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e-cc-----------CC-cEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I-TL-----------GG-RIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~-~~-----------~~-~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++.  +..   + ..           .. ++......... |.|.+++..|.|.
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~   88 (253)
T 3to4_D           10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRT   88 (253)
T ss_dssp             EEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEE
T ss_pred             eEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeE
Confidence            35678899999999988888889999872  111   1 00           11 44444333333 9999999999999


Q ss_pred             EEEEEecCCc------eeEEEEEEEecC-----CCCeecc-Ccce---eCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         64 YMCQASNNLG------SSQQFIQLSGIP-----NIPVFQK-SSRR---LGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        64 y~C~~~~~~~------~~~~~~~l~~~~-----~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      |.|.+.+..+      .......+.+..     .+|.... .+..   ..++.+.|.|.+.+..|.. ..+.|.+
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~-i~v~W~k  162 (253)
T 3to4_D           89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH-VELSWWV  162 (253)
T ss_dssp             EEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC-EEEEEEE
T ss_pred             EEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCc-EEEEEEE
Confidence            9999986532      111122333321     2332221 1111   1246899999997743322 2344544

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.28  E-value=5.2e-11  Score=68.46  Aligned_cols=70  Identities=11%  Similarity=0.113  Sum_probs=48.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC-cEEEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      ..+.+|+++.|.|.+.+. .+.+.|++++..+.... .+.... .+....|.|.++...|.|.|+|.+.|..+
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            356789999999999877 78999999987654221 111111 12245899999999999999999998754

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.28  E-value=2.9e-11  Score=64.50  Aligned_cols=82  Identities=24%  Similarity=0.437  Sum_probs=58.8

Q ss_pred             eeccCCccEEEEEEeeecCC----CeeEEEECC-------EEec--------------cCCcEEEEec---CCeEEEEEe
Q psy12132          3 SITAPDMRAEIICNVYANPP----AKVEWFRDG-------TAIT--------------LGGRIDMHVS---SEKHSLLVR   54 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~----~~~~w~~~~-------~~~~--------------~~~~~~~~~~---~~~~~l~i~   54 (126)
                      +.+.+|+++.|.|.+.+.+.    +.+.|++++       ..+.              ...++.+...   .....|.|.
T Consensus        15 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   94 (126)
T 1eaj_A           15 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   94 (126)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEEC
Confidence            56788999999999986654    349999853       2221              1134444322   123579999


Q ss_pred             cCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132         55 HIKDTDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        55 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      +++..|.|.|.|.+.+..+.....+.|.|.
T Consensus        95 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  124 (126)
T 1eaj_A           95 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL  124 (126)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence            999999999999999987777777777654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.28  E-value=6.1e-12  Score=72.92  Aligned_cols=73  Identities=16%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             eccCCccEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC-CceeEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~l   81 (126)
                      .+.+|+++.|.|.+.+. |.+.+.|++++..+...     ..   ...|.|.++...|.|.|+|.+.|. .+.....+.|
T Consensus        99 ~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----~~---~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l  170 (204)
T 3sgj_C           99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----HH---NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI  170 (204)
T ss_dssp             EEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EE---CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----cC---CceEEECcCCcccCEEEEEEEEeCCCceecCcEEE
Confidence            45689999999999655 55789999999875321     11   237999999999999999999994 4444556666


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       171 ~V~  173 (204)
T 3sgj_C          171 TIT  173 (204)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.28  E-value=6.3e-11  Score=63.15  Aligned_cols=70  Identities=16%  Similarity=0.349  Sum_probs=53.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++..     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        12 ~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   91 (119)
T 2e27_L           12 SLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAATYYCL   91 (119)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCEEEEEE
Confidence            356889999999999988778899999842     1121         13466655445567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        92 ~~~~   95 (119)
T 2e27_L           92 QYDN   95 (119)
T ss_dssp             ECGG
T ss_pred             EccC
Confidence            8864

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.27  E-value=1.5e-11  Score=68.92  Aligned_cols=72  Identities=14%  Similarity=0.318  Sum_probs=54.3

Q ss_pred             eeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-eEEEEE
Q psy12132          3 SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~   80 (126)
                      ..+.+|+++.|.|.+. +.|.+.+.|++++..+....        ....|.|.++...|.|.|+|.+.|..|. ....+.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~  166 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT  166 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------CCCeEEEEeccccCCEEEEEEEEeCcCccccccEE
Confidence            3466899999999994 45668999999987754211        1237999999999999999999998875 333444


Q ss_pred             EE
Q psy12132         81 LS   82 (126)
Q Consensus        81 l~   82 (126)
                      |.
T Consensus       167 l~  168 (170)
T 3ry4_A          167 IT  168 (170)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.27  E-value=1.1e-10  Score=67.69  Aligned_cols=108  Identities=20%  Similarity=0.250  Sum_probs=61.3

Q ss_pred             cCCccEEEEEEeeecCC----CeeEEEECCEEeccCC--cEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          6 APDMRAEIICNVYANPP----AKVEWFRDGTAITLGG--RIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~----~~~~w~~~~~~~~~~~--~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..|+++.|.|.+.+.++    +.+.|++++..+....  ......++..   ..|.+......|.|.|+|.+.+..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            68999999999988753    4899999997664321  1111112211   1222223333449999999999876542


Q ss_pred             EEEEEE---ecCCCCeec-cCc--ceeCCCeeEEEEEEccCCc
Q psy12132         77 QFIQLS---GIPNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        77 ~~~~l~---~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      ....+.   ....+|... ...  ....+..+.|.|.+.+..|
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P  138 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYP  138 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeEC
Confidence            222232   112233322 211  1224556999999987544

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.27  E-value=2.6e-10  Score=73.57  Aligned_cols=112  Identities=13%  Similarity=0.232  Sum_probs=72.8

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E---Eec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.+  .+.+.|+++.  .   .+.              ...++.+..+  .....|.|.+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (475)
T 1iga_A           10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (475)
T ss_pred             cEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCCh
Confidence            46788999999999998654  5689999852  1   110              1235554433  2356899999999


Q ss_pred             CCCEEEEEEEecCCce------eEEEEEEEecC---CCCe-eccC-cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGS------SQQFIQLSGIP---NIPV-FQKS-SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~------~~~~~~l~~~~---~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..|.      ......|.+..   .+|. .... .....++.+.|.|.+.+..|
T Consensus        90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P  155 (475)
T 1iga_A           90 EDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFP  155 (475)
T ss_pred             hhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecC
Confidence            9999999999987541      12233444432   2232 2221 11246788999999987644

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.27  E-value=1.6e-10  Score=74.18  Aligned_cols=112  Identities=14%  Similarity=0.253  Sum_probs=73.5

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CE---Eec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GT---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++  +.   .+.              ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (457)
T 1hzh_H            9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (457)
T ss_dssp             CEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCc
Confidence            45788999999999998776  678999983  21   110              1246655443  3456899999999


Q ss_pred             CCCEEEEEEEecCCc------------eeEEEEEEEecC---CCCe-eccC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLG------------SSQQFIQLSGIP---NIPV-FQKS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~------------~~~~~~~l~~~~---~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|+|.+.+..|            .......+.+..   .+|. ....  .....++.+.|.|.+.+..|
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  161 (457)
T 1hzh_H           89 ADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  161 (457)
T ss_dssp             GGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBS
T ss_pred             ccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeC
Confidence            999999999998754            122233444432   1232 2221  12346788999999977643

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.27  E-value=4.3e-13  Score=90.47  Aligned_cols=82  Identities=24%  Similarity=0.437  Sum_probs=0.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+..  ....|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus       676 ~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  753 (772)
T 3v2a_R          676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI  753 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC--CCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEE
Confidence            456779999999999999999999999998877655444332  234899999999999999999999999988888887


Q ss_pred             ecCC
Q psy12132         83 GIPN   86 (126)
Q Consensus        83 ~~~~   86 (126)
                      |...
T Consensus       754 V~~~  757 (772)
T 3v2a_R          754 IEGA  757 (772)
T ss_dssp             ----
T ss_pred             EECC
Confidence            7543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.27  E-value=1.6e-11  Score=69.41  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=54.9

Q ss_pred             eccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-eEEEEEE
Q psy12132          4 ITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l   81 (126)
                      .+.+|+++.|.|.+. +.|.+.+.|++++..+....        ....|.|.++...|.|.|+|.+.|..+. ....+.|
T Consensus        96 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l  167 (176)
T 1f2q_A           96 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNI  167 (176)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEE
Confidence            456899999999994 56667999999998774221        1237999999999999999999986433 3444555


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .+.
T Consensus       168 ~V~  170 (176)
T 1f2q_A          168 TVI  170 (176)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.26  E-value=1.9e-11  Score=74.92  Aligned_cols=104  Identities=10%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC-----ceeEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQF   78 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-----~~~~~~   78 (126)
                      .+.+|+++.|.|.+.+. .+.+.|+|++..+.....    .......|.|.++...|.|.|+|.+.+..     +.....
T Consensus        34 ~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~  108 (316)
T 3vh8_G           34 VVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNP  108 (316)
T ss_dssp             EEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH----HCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCC
T ss_pred             ccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec----CCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCc
Confidence            46689999999999876 788999999866432110    01122379999999999999999987531     222334


Q ss_pred             EEEEe--cCCCCeeccC--cceeCCCeeEEEEEEccCC
Q psy12132         79 IQLSG--IPNIPVFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        79 ~~l~~--~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      +.|.+  ...+|.+...  .....++.+.|.|...+..
T Consensus       109 ~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~  146 (316)
T 3vh8_G          109 VVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMF  146 (316)
T ss_dssp             EEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCC
T ss_pred             EEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCC
Confidence            44444  2333433321  2245788999999985433

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.25  E-value=1.1e-11  Score=70.78  Aligned_cols=60  Identities=18%  Similarity=0.413  Sum_probs=49.7

Q ss_pred             cCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          6 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      .+|+++.|.|.+   |.|.+.|+|++..+.....       ....|.|.++...|.|.|+|.+.|..|..
T Consensus       120 ~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          120 RGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            489999999988   7889999999988753321       22379999999999999999999987655

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.25  E-value=3.9e-11  Score=73.18  Aligned_cols=110  Identities=16%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCEEec-----------------cCCcEEEEec-CCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGTAIT-----------------LGGRIDMHVS-SEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~-----------------~~~~~~~~~~-~~~~~l~i~~~~~~d~g   62 (126)
                      ++.+..|+++.|.|.+.+. +.+.+.|+|++....                 ...++.+... ....+|.|.++...|.|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            3567789999999998644 345799998532110                 0122222111 12357999999999999


Q ss_pred             EEEEEEecC-CceeEEEEEEEecCCCCe--eccC--cceeCCCeeEEEEEEccC
Q psy12132         63 NYMCQASNN-LGSSQQFIQLSGIPNIPV--FQKS--SRRLGPDGYRLVWQVDTY  111 (126)
Q Consensus        63 ~y~C~~~~~-~~~~~~~~~l~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~~  111 (126)
                      .|+|.+.+. .+.......+.+...++.  ....  .....+..+.|.|...+.
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g  141 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATG  141 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEE
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCC
Confidence            999999875 555555555554333322  2211  112345678899977443

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.25  E-value=2.7e-11  Score=64.05  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=57.0

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEECCEE--------ec---------cCCcEEEEe--cCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDGTA--------IT---------LGGRIDMHV--SSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~~--------~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~   61 (126)
                      .+.+.+|+++.|.|.... .....+.|++....        +.         ...++.+..  ......|.|.+++..|+
T Consensus         6 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   85 (116)
T 2or8_A            6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDS   85 (116)
T ss_dssp             EEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             eEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccC
Confidence            367889999999999864 33567999986411        11         123333321  12345799999999999


Q ss_pred             EEEEEEEecCCcee--EEEEEEEecC
Q psy12132         62 GNYMCQASNNLGSS--QQFIQLSGIP   85 (126)
Q Consensus        62 g~y~C~~~~~~~~~--~~~~~l~~~~   85 (126)
                      |.|.|.+.+..+..  ...+.|.|.+
T Consensus        86 G~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           86 GLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             EEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             EEEEEEEEcCCcccccEEEEEEEECC
Confidence            99999998765433  5666666643

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.25  E-value=1.3e-10  Score=61.16  Aligned_cols=69  Identities=29%  Similarity=0.541  Sum_probs=52.1

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEEC--CE----EeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRD--GT----AITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~--~~----~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      .+.+.+|+++.|.|.+.+.  +.+.+.|+++  +.    .+....++....  ......|.|.+++..|.|.|.|.+.+
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A            9 TITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            3678899999999999765  4678999984  21    233345665432  23457899999999999999999887

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.25  E-value=2e-10  Score=73.37  Aligned_cols=111  Identities=15%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEEe----c-------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTAI----T-------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~----~-------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+..|+++.|.|.+.+.+  .+.+.|+++  +..+    .             ...++.+..+  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (444)
T 1igt_B            9 GGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKS   88 (444)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCH
Confidence            45788999999999998764  568999984  2211    0             1246655443  2456899999999


Q ss_pred             CCCEEEEEEEecCCce---eEEEEEEEecC---CCC-eeccC--cceeCCCeeEEEEEEccCC
Q psy12132         59 TDFGNYMCQASNNLGS---SQQFIQLSGIP---NIP-VFQKS--SRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~---~~~~~~l~~~~---~~~-~~~~~--~~~~~~~~~~l~~~~~~~~  112 (126)
                      .|.|.|.|.+.+..+.   ......|.+..   .+| .+...  .....++.+.|.|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~  151 (444)
T 1igt_B           89 EDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYF  151 (444)
T ss_dssp             GGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEB
T ss_pred             HHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEccee
Confidence            9999999999986543   11223444432   123 22221  1124678899999997753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.25  E-value=1.2e-10  Score=69.06  Aligned_cols=69  Identities=23%  Similarity=0.474  Sum_probs=53.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE--CCEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+.+.+.+.|++  ++..+.            ...++..........|.|.++...|.|.|+|.+
T Consensus       145 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  224 (247)
T 2ghw_B          145 LSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQ  224 (247)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEE
Confidence            457789999999999999889999998  443221            124555544445568999999999999999999


Q ss_pred             ecC
Q psy12132         69 SNN   71 (126)
Q Consensus        69 ~~~   71 (126)
                      .+.
T Consensus       225 ~~~  227 (247)
T 2ghw_B          225 RSN  227 (247)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            875

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.24  E-value=9.7e-12  Score=72.08  Aligned_cols=72  Identities=13%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecC-CCCCCEEEEEEEecCCcee-EEEEEEE
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNLGSS-QQFIQLS   82 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~-~~~~~l~   82 (126)
                      +|+++.|.|.  +.|.|.+.|++++..+...  .+......+   .|.|.++ +..|.|.|+|.+.|..|.. ...+.|.
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~---~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDED---HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETT---EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCC---EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            7999999999  6888999999999877543  122222233   8999999 9999999999999998853 4555554


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      +
T Consensus       202 ~  202 (204)
T 1sy6_A          202 A  202 (204)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.24  E-value=2.2e-11  Score=68.78  Aligned_cols=72  Identities=15%  Similarity=0.313  Sum_probs=54.2

Q ss_pred             eccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-eEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQL   81 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l   81 (126)
                      .+.+|+++.|.|.+.+.+++ .+.|++++..+...     ..   ...|.|.++...|.|.|+|.+.|..+. ....+.|
T Consensus        99 ~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----~~---~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l  170 (175)
T 1fnl_A           99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HH---NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI  170 (175)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EE---CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----CC---CCEEEEcccChhhCeEEEEEEEcCCCCccCccEEE
Confidence            45689999999999877665 99999999876321     11   237999999999999999999996543 3344444


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus       171 ~V  172 (175)
T 1fnl_A          171 TI  172 (175)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.24  E-value=5.4e-11  Score=69.68  Aligned_cols=82  Identities=10%  Similarity=0.065  Sum_probs=53.9

Q ss_pred             eeccCCccEEEEEEeee-cCCCeeEEEECCE-EeccCC-cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVYA-NPPAKVEWFRDGT-AITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~~-~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ..+..|+.+.+.|.+.+ .|.|.+.|++++. .+.... ......++....+.+..++..|.|.|+|.+.|..|......
T Consensus       128 ~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~  207 (226)
T 4f80_A          128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTA  207 (226)
T ss_dssp             EEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEE
T ss_pred             eeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEE
Confidence            34567899999999987 5999999998653 333221 11112222223455566788999999999999999888888


Q ss_pred             EEEec
Q psy12132         80 QLSGI   84 (126)
Q Consensus        80 ~l~~~   84 (126)
                      .+.+.
T Consensus       208 ~v~v~  212 (226)
T 4f80_A          208 SISIA  212 (226)
T ss_dssp             EECCC
T ss_pred             EEEEC
Confidence            87764

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.24  E-value=2.7e-10  Score=67.92  Aligned_cols=111  Identities=13%  Similarity=0.142  Sum_probs=68.7

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E--E-ec------------cCCcEEEEec-CCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T--A-IT------------LGGRIDMHVS-SEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~--~-~~------------~~~~~~~~~~-~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+. .+.+.+.|+++.  .  . +.            ...++..... .....|.|.+++..|.|.
T Consensus        12 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   90 (252)
T 1oga_E           12 YLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   90 (252)
T ss_dssp             EEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             eEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence            36788999999999985 467899999842  1  1 11            1245554321 234589999999999999


Q ss_pred             EEEEEecCC---ceeEEEEEEEecC-----CCCeecc-Ccce---eCCCeeEEEEEEccCCc
Q psy12132         64 YMCQASNNL---GSSQQFIQLSGIP-----NIPVFQK-SSRR---LGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        64 y~C~~~~~~---~~~~~~~~l~~~~-----~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.+.+..   ........+.+..     .+|.+.. .+..   ..++.+.|+|.+.+..|
T Consensus        91 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P  152 (252)
T 1oga_E           91 YLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  152 (252)
T ss_dssp             EEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             EEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcC
Confidence            999998751   1111112333321     2343322 1211   13678999999977533

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.24  E-value=1.7e-11  Score=73.41  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=61.1

Q ss_pred             eeccCCccEEEEEEe---eecCCCeeEEEEC-CEEecc-----------------C----CcEEEEe--cCCeEEEEEec
Q psy12132          3 SITAPDMRAEIICNV---YANPPAKVEWFRD-GTAITL-----------------G----GRIDMHV--SSEKHSLLVRH   55 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~---~~~p~~~~~w~~~-~~~~~~-----------------~----~~~~~~~--~~~~~~l~i~~   55 (126)
                      +.+.+|+++.|.|.+   .+.|.+.+.|+++ +.....                 .    .+..+..  ......|.|.+
T Consensus       128 ~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~  207 (268)
T 3mj6_A          128 LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQT  207 (268)
T ss_dssp             EEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECS
T ss_pred             cccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECc
Confidence            467789999999999   5668899999983 211100                 0    1111110  11245899999


Q ss_pred             CCCCCCEEEEEEEecCCceeEEEEEEEecCCCCeecc
Q psy12132         56 IKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK   92 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~   92 (126)
                      +...|.|.|+|.+.|..|.....+.|.+...+|.+..
T Consensus       208 v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~  244 (268)
T 3mj6_A          208 VKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTI  244 (268)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECC------
T ss_pred             CChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCeeee
Confidence            9999999999999999998888888888555554443

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.24  E-value=6e-11  Score=63.37  Aligned_cols=87  Identities=14%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             ceeccCCccEEEEEEeeec----CCCeeEEEECCE-------Eecc-------------CCcEEEEec--CCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYAN----PPAKVEWFRDGT-------AITL-------------GGRIDMHVS--SEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~----p~~~~~w~~~~~-------~~~~-------------~~~~~~~~~--~~~~~l~i~~   55 (126)
                      .+.+..|+++.|.|.+...    +.+.+.|++.+.       .+..             ..++.+...  ..+.+|.|.+
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (124)
T 1neu_A            8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN   87 (124)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECS
T ss_pred             eEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEcc
Confidence            4678899999999998643    456899987431       1100             234443311  2345899999


Q ss_pred             CCCCCCEEEEEEEecCCce--eEEEEEEEecCCCC
Q psy12132         56 IKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIP   88 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~~--~~~~~~l~~~~~~~   88 (126)
                      ++..|.|.|.|.+.+..+.  ....+.|.|.+.|+
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           88 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP  122 (124)
T ss_dssp             CCGGGCEEEEEEEEC----CCEEEEEEEEEEC---
T ss_pred             CChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCC
Confidence            9999999999999987553  35666777665443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.23  E-value=8.8e-12  Score=71.64  Aligned_cols=69  Identities=7%  Similarity=-0.022  Sum_probs=43.8

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE-EEEe-cCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+.+|+++.|.|.+.+.| +.+.|+|++..+...... .... ......|.|.+++..|.|.|+|.+.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             -------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            467899999999999887 899999998765422111 1111 11235899999999999999999998653

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.23  E-value=4.8e-11  Score=71.32  Aligned_cols=70  Identities=20%  Similarity=0.319  Sum_probs=54.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE--CCEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+.+.+.+.|++  ++..+.            ...++..........|.|.+++..|.|.|.|.+
T Consensus       149 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  228 (257)
T 1f3r_B          149 LSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ  228 (257)
T ss_dssp             ECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEE
Confidence            457789999999999988888999999  443221            124555544445568999999999999999999


Q ss_pred             ecCC
Q psy12132         69 SNNL   72 (126)
Q Consensus        69 ~~~~   72 (126)
                      .|..
T Consensus       229 ~n~~  232 (257)
T 1f3r_B          229 YNNG  232 (257)
T ss_dssp             ESSS
T ss_pred             eCCC
Confidence            9864

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.23  E-value=1.4e-10  Score=61.03  Aligned_cols=70  Identities=19%  Similarity=0.412  Sum_probs=53.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|++++|.|.+.+.+.+.+.|++..     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        13 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (111)
T 1i3g_L           13 FMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQ   92 (111)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCEEEEEE
Confidence            367889999999999987777889999853     1121         12466655444567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        93 ~~~~   96 (111)
T 1i3g_L           93 QYSS   96 (111)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.23  E-value=1.7e-11  Score=69.55  Aligned_cols=64  Identities=9%  Similarity=0.162  Sum_probs=51.0

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.++.|.|.+.+.|.|.+.|++++..+....+           +.+..+...|.|.|+|.+.|..|.......|.
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence            44689999999999999999999987754332           33446678999999999999998887766554

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.23  E-value=5.4e-11  Score=73.17  Aligned_cols=109  Identities=13%  Similarity=0.137  Sum_probs=67.6

Q ss_pred             ccCCccEEEEEEeeec-CCC---eeEEEECC-EEeccCCcEEE-EecC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYAN-PPA---KVEWFRDG-TAITLGGRIDM-HVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~~---~~~w~~~~-~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +.+|+++.|.|.+.+. |.+   .+.|++++ ..+........ ..++   ....|.|.++...|.|.|+|.+.|..+..
T Consensus       125 v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          125 LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR  204 (323)
T ss_dssp             HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             hccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC
Confidence            5579999999999875 455   89999964 44332221111 0111   12479999999999999999999876444


Q ss_pred             EEEEEEEe---cCCCCeecc---CcceeCCCeeEEEEEEccCCc
Q psy12132         76 QQFIQLSG---IPNIPVFQK---SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 ~~~~~l~~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      ...+.+..   ...+|.+..   ......++.+.|+|.+.+..|
T Consensus       205 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p  248 (323)
T 2wqr_A          205 ALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMP  248 (323)
T ss_dssp             CEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBS
T ss_pred             CeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeC
Confidence            33444432   112332221   111223788999999977433

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.22  E-value=2.8e-10  Score=67.87  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=68.6

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC-----EEe--------------ccCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG-----TAI--------------TLGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~-----~~~--------------~~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.  +...+.|++..     ..+              ....++.+..+  .....|.|.+++.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS   88 (253)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            4678899999999999763  35679998732     111              01245555433  2456799999999


Q ss_pred             CCCEEEEEEEecCC----ceeEEEEEEEec---CCCCeec-cC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNL----GSSQQFIQLSGI---PNIPVFQ-KS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~----~~~~~~~~l~~~---~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..    ........+.+.   ..+|.+. ..  .....++.+.|.|.+.+..|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  153 (253)
T 3liz_H           89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP  153 (253)
T ss_dssp             GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBS
T ss_pred             hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeC
Confidence            99999999998752    222222334442   2333332 11  11235778999999977433

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.21  E-value=2.5e-10  Score=65.62  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             cCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEE-ecCCe-EEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          6 APDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMH-VSSEK-HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         6 ~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~-~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      ..|+.+.|.|.+. +.|.|.+.|++++..+......... ..+.. ....+..+...|.|.|+|.+.|..+...+.+.+.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~  198 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN  198 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence            4577899999995 8999999999999877643222112 12121 2223445566899999999999988887776543

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.21  E-value=1.4e-10  Score=60.72  Aligned_cols=62  Identities=11%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             eccCCccEEEEEEeeecCCC-----eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          4 ITAPDMRAEIICNVYANPPA-----KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+.+|++++|.|.+.+.+..     .+.|+|++..+..     ..   ....|.|..+...|.|.|.|.+.+..+
T Consensus        18 ~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-----~~---~~~~l~i~~v~~~dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A           18 EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-----RG---LSSEFQIPTASEDHSGSYWCEAATEDN   84 (108)
T ss_dssp             SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-----EE---SCCEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-----CC---cccEEEeCccCcccCeEEEEEEEeCCC
Confidence            36789999999998755443     4999999987642     11   224799999999999999999998643

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.21  E-value=2.8e-12  Score=73.96  Aligned_cols=72  Identities=24%  Similarity=0.540  Sum_probs=55.4

Q ss_pred             eccCCccEEEEEEe-eecCCCeeEEEECCEEeccCCcE-------EEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          4 ITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRI-------DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         4 ~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      .+..|+.+.|.|.+ .+.|.+.+.|++++..+......       ..........|.|.++...|.|.|+|.+.|..|..
T Consensus       118 ~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             EEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             ceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            46779999999996 88999999999998776543211       01111123479999999999999999999998876

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.20  E-value=7.4e-11  Score=72.57  Aligned_cols=105  Identities=10%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             ccEEEEEEeeec-C-CCeeEEEECCEEeccCCcE--EEEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          9 MRAEIICNVYAN-P-PAKVEWFRDGTAITLGGRI--DMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         9 ~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.|.|.+.+. | .+.+.|++++..+......  ....++.   ...|.|......|.|.|+|.+.+..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999886 3 4689999999887643211  1111221   1257777777779999999999987655544332


Q ss_pred             Ee---cCCCCeeccCcc---eeCCCeeEEEEEEccCCc
Q psy12132         82 SG---IPNIPVFQKSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        82 ~~---~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      ..   ...++.+...+.   ...++.+.|.|...+..|
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P  142 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP  142 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECC
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCC
Confidence            11   112222222221   245788999999877544

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.20  E-value=1.7e-10  Score=60.63  Aligned_cols=70  Identities=17%  Similarity=0.361  Sum_probs=52.7

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+.+.+    .+.+.|++..  .   .+.         ...++..........|.|.+++..|+|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~   89 (111)
T 1j05_L           10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccCEE
Confidence            36788999999999998665    4679999852  1   121         1246665544556789999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+.+.
T Consensus        90 Y~C~~~~~   97 (111)
T 1j05_L           90 YYCQQTNE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEecC
Confidence            99998864

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.19  E-value=1.6e-10  Score=68.88  Aligned_cols=70  Identities=19%  Similarity=0.353  Sum_probs=54.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.+.+.+.+.+.|+++  +..+.            ...++.....+....|.|.+++..|.|.|.|.+
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  227 (256)
T 3umt_A          148 LSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ  227 (256)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE
Confidence            5678899999999999888889999983  21111            124565555555678999999999999999999


Q ss_pred             ecCC
Q psy12132         69 SNNL   72 (126)
Q Consensus        69 ~~~~   72 (126)
                      .+..
T Consensus       228 ~~~~  231 (256)
T 3umt_A          228 YASS  231 (256)
T ss_dssp             CSSS
T ss_pred             eeCC
Confidence            8753

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.19  E-value=7.8e-11  Score=61.50  Aligned_cols=81  Identities=14%  Similarity=0.206  Sum_probs=54.5

Q ss_pred             ceeccCCccEEEEEEeeecCCC---eeEEEECCEE--------ec---------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPA---KVEWFRDGTA--------IT---------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~--------~~---------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      ++.+..|+++.|.|.+.+.+.+   .+.|++....        +.         ...++.+..+  .....|.|.+++..
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   82 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD   82 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh
Confidence            4678899999999998765433   4899985421        10         1223333221  12358999999999


Q ss_pred             CCEEEEEEEecCCceeEEEEEEE
Q psy12132         60 DFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus        60 d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      |.|.|.|.+.+..+.....+.|.
T Consensus        83 D~G~Y~C~v~~~~~~~~~~~~l~  105 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMNDKKLELK  105 (109)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEE
T ss_pred             hCeEEEEEEEcCCcccceEEEEE
Confidence            99999999998765554444444

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.19  E-value=9.7e-10  Score=64.84  Aligned_cols=70  Identities=16%  Similarity=0.310  Sum_probs=51.5

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC-----EEec---------cCCcEEEEec--CCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG-----TAIT---------LGGRIDMHVS--SEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~-----~~~~---------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+.+.+  ...+.|++..     ..+.         ...++....+  .....|.|.+++..|.|.
T Consensus        10 ~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~   89 (229)
T 1hxm_A           10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS   89 (229)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeE
Confidence            35678999999999997544  4679998742     1221         1356666532  345789999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+.+.
T Consensus        90 Y~C~~~~~   97 (229)
T 1hxm_A           90 YYCACDTL   97 (229)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99998865

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.19  E-value=8.8e-11  Score=69.20  Aligned_cols=69  Identities=17%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC-----EEe---------ccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG-----TAI---------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|+++.|.|.+.+.|.+.+.|++++     ..+         ....++....  ......|.|.+++..|.|.|+|
T Consensus       137 ~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  216 (238)
T 2p1y_A          137 LTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC  216 (238)
T ss_dssp             EEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEE
T ss_pred             EEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEE
Confidence            45778999999999999999999999853     111         1124454432  2334689999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+.|.
T Consensus       217 ~a~n~  221 (238)
T 2p1y_A          217 AAIDT  221 (238)
T ss_dssp             EEEET
T ss_pred             EEeeC
Confidence            99986

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.19  E-value=2e-10  Score=61.73  Aligned_cols=81  Identities=20%  Similarity=0.344  Sum_probs=55.5

Q ss_pred             ceeccCCccEEEEEEeeecCCC----eeEEEECC----------------EEecc----CCcEEEEecC-----------
Q psy12132          2 HSITAPDMRAEIICNVYANPPA----KVEWFRDG----------------TAITL----GGRIDMHVSS-----------   46 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~----~~~w~~~~----------------~~~~~----~~~~~~~~~~-----------   46 (126)
                      .+.+.+|+++.|.|.+...+.+    .+.|++..                ..+..    ..++.+....           
T Consensus        11 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~   90 (128)
T 3r0n_A           11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL   90 (128)
T ss_dssp             EEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBC
T ss_pred             eEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCC
Confidence            4677889999999999866655    78999852                11111    1244333221           


Q ss_pred             CeEEEEEecCCCCCCEEEEEEEec-CCceeEEEEEEE
Q psy12132         47 EKHSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLS   82 (126)
Q Consensus        47 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~   82 (126)
                      .+..|.|.+++..|.|.|.|.+.+ ..|.......|.
T Consensus        91 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~  127 (128)
T 3r0n_A           91 QDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR  127 (128)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEE
Confidence            145899999999999999998764 456666665554

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.19  E-value=8.3e-11  Score=67.51  Aligned_cols=69  Identities=12%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE-EEEecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+.+|+++.|.|.+.+ +.+.+.|++++..+...... ..........|.|.++...|.|.|+|.+.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            4578999999999987 45689999998765433221 111112335899999999999999999998754

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.19  E-value=2.7e-10  Score=60.04  Aligned_cols=71  Identities=23%  Similarity=0.441  Sum_probs=52.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E-E--e-------ccCCcEEEEec---CCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T-A--I-------TLGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~-~--~-------~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|+++.|.|.+.+.+ +.+.|++..  . .  +       ....++....+   .....|.|.+++..|.|.|.|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   88 (113)
T 1h5b_A           10 ALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEEEE
Confidence            35678999999999998654 689999843  1 1  1       12345555432   245689999999999999999


Q ss_pred             EEecCCc
Q psy12132         67 QASNNLG   73 (126)
Q Consensus        67 ~~~~~~~   73 (126)
                      .+.+..+
T Consensus        89 ~~~n~~~   95 (113)
T 1h5b_A           89 AAEASSG   95 (113)
T ss_dssp             EEECSSS
T ss_pred             EEecCCC
Confidence            9988653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.19  E-value=2.8e-10  Score=68.01  Aligned_cols=69  Identities=19%  Similarity=0.339  Sum_probs=53.0

Q ss_pred             eeccCCccEEEEEEeeecCCC-----eeEEEE--CCEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-----KVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-----~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|+++.|.|.+.+.|.+     .+.|++  ++..+.            ...++..........|.|.+++..|.|.
T Consensus       131 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~  210 (256)
T 1nqb_A          131 LPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGV  210 (256)
T ss_dssp             EEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEE
Confidence            457889999999999888765     899999  454321            1245555444455689999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |+|.+.+.
T Consensus       211 Y~C~a~~~  218 (256)
T 1nqb_A          211 YYCFQGSH  218 (256)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEccC
Confidence            99999874

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.18  E-value=2e-10  Score=60.14  Aligned_cols=69  Identities=26%  Similarity=0.504  Sum_probs=51.3

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E----EeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T----AITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~----~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      .+.+.+|+++.|.|.+.+..  .+.+.|+++.  .    .+....++....  ......|.|.+++..|+|.|.|.+.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A            9 IATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            35788999999999997653  4689999852  2    222345665432  23457899999999999999999876

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.18  E-value=2.8e-10  Score=68.74  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=59.5

Q ss_pred             eccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEec--CCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .+..|+.+.|.|.+.+.|. +.+.|++++..+...........  .....|.|.++...|.|.|+|.+.|..|.....+.
T Consensus       197 ~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  276 (292)
T 4dkd_C          197 VRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF  276 (292)
T ss_dssp             CCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEE
T ss_pred             eEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEE
Confidence            3468999999999998765 46788888765543222111111  12347999999999999999999999999888888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus       277 l~V~  280 (292)
T 4dkd_C          277 FRVV  280 (292)
T ss_dssp             ECC-
T ss_pred             EEEe
Confidence            8764

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.18  E-value=3.7e-10  Score=59.22  Aligned_cols=83  Identities=13%  Similarity=0.239  Sum_probs=56.6

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEECC--EE---ec--------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFRDG--TA---IT--------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~--~~---~~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|...+.. ...+.|++..  ..   +.        ...++.+..  ......|.|.+++..|+|.|.
T Consensus         5 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   84 (110)
T 2q87_A            5 TVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYW   84 (110)
T ss_dssp             EEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEE
Confidence            36788999999999986543 3689999853  11   10        124555542  223568999999999999999


Q ss_pred             EEEecCC-c---eeEEEEEEEec
Q psy12132         66 CQASNNL-G---SSQQFIQLSGI   84 (126)
Q Consensus        66 C~~~~~~-~---~~~~~~~l~~~   84 (126)
                      |.+.+.. |   .....+.|.+.
T Consensus        85 C~~~~~~~g~~~~~~~~v~v~V~  107 (110)
T 2q87_A           85 CGVDTPWLQDFHDPVVEVEVSVF  107 (110)
T ss_dssp             EEEECTTSCCBCCCSEEEEEEEC
T ss_pred             EEEecCccCccCCccEEEEEEEe
Confidence            9998774 3   23344455543

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.18  E-value=9.9e-10  Score=56.76  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             eeccCCccEEEEEEeee-cCCCeeEEEECC----EEeccC-C-cEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          3 SITAPDMRAEIICNVYA-NPPAKVEWFRDG----TAITLG-G-RIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~----~~~~~~-~-~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      ..+..|+.+.|.|.+.+ .+.|.++|.|.+    ..+... + +..+...+  ....|.|.++...|.|.|+|.+.+..|
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g  103 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ  103 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCC
Confidence            35778999999999965 679999999844    222211 1 22222222  345899999999999999999999776


Q ss_pred             eeE-EEEEEEe
Q psy12132         74 SSQ-QFIQLSG   83 (126)
Q Consensus        74 ~~~-~~~~l~~   83 (126)
                      ... +...+.|
T Consensus       104 ~ieSHs~ti~V  114 (122)
T 1xau_A          104 VINSHSVTIHV  114 (122)
T ss_dssp             EEECCCEEEEE
T ss_pred             ceeeeEEEEEE
Confidence            553 3333443

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.18  E-value=1.4e-10  Score=62.81  Aligned_cols=81  Identities=19%  Similarity=0.339  Sum_probs=55.1

Q ss_pred             ceeccCCccEEEEEEeee---cCCCeeEEEECCEE-----ec-----------------------cC--CcEEEEecCCe
Q psy12132          2 HSITAPDMRAEIICNVYA---NPPAKVEWFRDGTA-----IT-----------------------LG--GRIDMHVSSEK   48 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~---~p~~~~~w~~~~~~-----~~-----------------------~~--~~~~~~~~~~~   48 (126)
                      .+.+..|+++.|.|.+..   .+.+.+.|++.+..     +.                       ..  .++.+.. ...
T Consensus        13 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~   91 (135)
T 1xt5_A           13 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-LAA   91 (135)
T ss_dssp             EEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC-TTS
T ss_pred             eEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec-CCC
Confidence            356788999999999753   56778999985421     11                       01  3333322 123


Q ss_pred             EEEEEecCCCCCCEEEEEEEecCC-----ceeEEEEEEEe
Q psy12132         49 HSLLVRHIKDTDFGNYMCQASNNL-----GSSQQFIQLSG   83 (126)
Q Consensus        49 ~~l~i~~~~~~d~g~y~C~~~~~~-----~~~~~~~~l~~   83 (126)
                      ..|.|.+++..|.|.|.|.+.+..     +.....+.|.|
T Consensus        92 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V  131 (135)
T 1xt5_A           92 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV  131 (135)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEE
T ss_pred             CeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEE
Confidence            579999999999999999998743     33345555555

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.17  E-value=3.4e-10  Score=73.04  Aligned_cols=107  Identities=10%  Similarity=0.008  Sum_probs=66.3

Q ss_pred             ccCCccEEEEEEeeecCC---CeeEEEECCEEeccCC--cEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          5 TAPDMRAEIICNVYANPP---AKVEWFRDGTAITLGG--RIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~---~~~~w~~~~~~~~~~~--~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +.+|+++.|.|.+.+.++   +.+.| .++ .+....  ......++   ....|.|.++...|.|.|+|.+.|..+...
T Consensus       259 ~~~G~~v~L~C~~~g~~p~~~~~i~W-~~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~  336 (475)
T 1iga_A          259 LLLGSEANLTCTLTGLRDASGVTFTW-TPS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP  336 (475)
T ss_pred             hccCCceEEEEEEEcccCCCceEEEE-CCC-CcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc
Confidence            467999999999987754   58999 433 322111  00011011   234799999999999999999999877654


Q ss_pred             EEEEEEe--cCCCCeec-cCcc---eeCCCeeEEEEEEccCCc
Q psy12132         77 QFIQLSG--IPNIPVFQ-KSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        77 ~~~~l~~--~~~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      ....+.+  ...+|.+. ....   ...++.+.|+|.+.+..|
T Consensus       337 ~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P  379 (475)
T 1iga_A          337 LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSP  379 (475)
T ss_pred             eEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeEC
Confidence            4334421  22334322 2221   235667999999977643

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.17  E-value=8.8e-11  Score=68.72  Aligned_cols=64  Identities=13%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+|++++|.|...+.+.+.+.|+|++..+...  .  ........|.|.++...|.|.|+|.+.+.
T Consensus       116 ~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--c--cCCCccCEEEEccCCcccCEEEEEEEEcC
Confidence            4678999999997767778899999998765431  1  12233458999999999999999999875

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.15  E-value=6.9e-11  Score=70.77  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=66.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC-CceeE---EE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN-LGSSQ---QF   78 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~---~~   78 (126)
                      ..+.+|+.+.|.|.+.  |.+.+.|  ++..+....        ....|.+..+...|.|.|+|.+.+. .|...   ..
T Consensus       108 ~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~--------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~  175 (265)
T 2oz4_A          108 PEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT  175 (265)
T ss_dssp             SEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS--------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEE
T ss_pred             ceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC--------CcEEEEEccccccCCceEEEEEEcCCCCCccccccc
Confidence            3456799999999998  8899999  766553221        2236788889999999999999753 35443   45


Q ss_pred             EEEEecCCCCeecc----CcceeCCCeeEEEEEEccCCc
Q psy12132         79 IQLSGIPNIPVFQK----SSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        79 ~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.|.+...|.....    ......++.+.|.|...+.++
T Consensus       176 ~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~  214 (265)
T 2oz4_A          176 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL  214 (265)
T ss_dssp             EEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESC
T ss_pred             EEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCC
Confidence            55554322222111    112356888999998877654

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.15  E-value=8.5e-10  Score=63.94  Aligned_cols=109  Identities=14%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.....+.|++..  .   .+.         ...++....  ......|.|.+++..|.|.|.
T Consensus         9 ~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~   88 (203)
T 2bnu_A            9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYL   88 (203)
T ss_dssp             EEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEE
Confidence            367789999999999976555689998742  1   111         124555542  234578999999999999999


Q ss_pred             EEEecCC---c--e--eEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCC
Q psy12132         66 CQASNNL---G--S--SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        66 C~~~~~~---~--~--~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (126)
                      |.+.+..   .  .  ....+.+...  +..|.......  ....+.|.|...+..
T Consensus        89 C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~--~~~~~~L~C~~~g~~  142 (203)
T 2bnu_A           89 CAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR--SKSSDKSVCLFTDFD  142 (203)
T ss_dssp             EEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC--SSSSSCEEEEEESCC
T ss_pred             EEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC--CCCCcEEEEEccccc
Confidence            9987631   1  1  1223333322  12222221111  223789999997753

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.15  E-value=3.1e-10  Score=59.10  Aligned_cols=64  Identities=14%  Similarity=0.144  Sum_probs=48.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+|++++|.|.+.+. ...+.|++++..+...   .....+....|.|.+++..|.|.|.|.+.+.
T Consensus        15 ~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~---~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK---EKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE---EECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             CcCcCCCEEEEEEcCCC-CcEEEEEECCccceee---eccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            46789999999999754 4678899998754321   1112234568999999999999999998874

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.15  E-value=2.8e-11  Score=77.18  Aligned_cols=112  Identities=13%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--EE---ec--------------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT--------------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~~--------------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+..|+++.|.|.+.+.+  .+.+.|+++.  ..   +.              ...++.+..+  +....|.|.+++.
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (434)
T 1igy_B            8 AELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTS   87 (434)
T ss_dssp             CCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCG
T ss_pred             CeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCCh
Confidence            46788999999999998764  6789999852  21   10              1235554332  2345899999999


Q ss_pred             CCCEEEEEEEecCCceeEEEEEEEecC---CCC-eeccC--cceeCCCeeEEEEEEccCCc
Q psy12132         59 TDFGNYMCQASNNLGSSQQFIQLSGIP---NIP-VFQKS--SRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~~~~~~l~~~~---~~~-~~~~~--~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .|.|.|.|.+.+..+.......|.+..   .+| .....  .....++.+.|.|...+..|
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P  148 (434)
T 1igy_B           88 DDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP  148 (434)
T ss_dssp             GGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBS
T ss_pred             HHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecC
Confidence            999999999988543333333444431   223 22211  12246788999999977533

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.15  E-value=2.2e-10  Score=59.99  Aligned_cols=70  Identities=24%  Similarity=0.433  Sum_probs=51.4

Q ss_pred             ceeccCCccEEEEEE-eeecC-CCeeEEEECCEE---ec---------cCCcEEEE--ecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICN-VYANP-PAKVEWFRDGTA---IT---------LGGRIDMH--VSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~-~~~~p-~~~~~w~~~~~~---~~---------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|. +.+.+ .+.+.|++....   +.         ...++...  .......|.|.+++..|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   88 (109)
T 1pew_A            9 SVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYY   88 (109)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEE
Confidence            467889999999999 76554 478999986521   11         12466655  3344678999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        89 C~~~~~   94 (109)
T 1pew_A           89 CQSYDA   94 (109)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            998764

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.15  E-value=2.7e-10  Score=60.22  Aligned_cols=85  Identities=15%  Similarity=0.062  Sum_probs=57.9

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC-------E-Eec---------cCCcEEEEe--cCCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG-------T-AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~-------~-~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d   60 (126)
                      .+.+.+|++++|.|.....  ....+.|++..       . .+.         ...++.+..  ...+.+|.|.+++..|
T Consensus         6 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   85 (115)
T 2or7_A            6 AVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGD   85 (115)
T ss_dssp             CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGG
T ss_pred             EEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHH
Confidence            4678899999999998643  34679999864       1 111         123443321  1234589999999999


Q ss_pred             CEEEEEEEecCCceeEEEEEEEecCC
Q psy12132         61 FGNYMCQASNNLGSSQQFIQLSGIPN   86 (126)
Q Consensus        61 ~g~y~C~~~~~~~~~~~~~~l~~~~~   86 (126)
                      +|.|.|.+..........+.|.|.+.
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (115)
T 2or7_A           86 GGPYCCVVEIPGAFHFVDYMLEVKPE  111 (115)
T ss_dssp             CEEEEEEECCTTSCEEEEEEEEEESC
T ss_pred             CEEEEEEEECCCceeEEEEEEEEcCC
Confidence            99999999876444466667776543

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.14  E-value=1.4e-09  Score=64.35  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=68.0

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEECC-----EEe---c----------------cCCcEEEEec--CCeEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG-----TAI---T----------------LGGRIDMHVS--SEKHSL   51 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~-----~~~---~----------------~~~~~~~~~~--~~~~~l   51 (126)
                      .+.+.+|+++.|.|.+.+.+    ...+.|++..     ..+   .                ...++.+..+  .....|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   88 (239)
T 3tv3_H            9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL   88 (239)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred             CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence            35678999999999998665    3489998732     111   1                1235554432  345689


Q ss_pred             EEecCCCCCCEEEEEEEecCCc-------------eeEEEEEEEec---CCCCeec-cCc--ceeCCCeeEEEEEEccCC
Q psy12132         52 LVRHIKDTDFGNYMCQASNNLG-------------SSQQFIQLSGI---PNIPVFQ-KSS--RRLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        52 ~i~~~~~~d~g~y~C~~~~~~~-------------~~~~~~~l~~~---~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~  112 (126)
                      .|.+++..|.|.|.|.+.+..+             .......+.+.   ..+|.+. ..+  ....++.+.|.|.+.+..
T Consensus        89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~  168 (239)
T 3tv3_H           89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  168 (239)
T ss_dssp             EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEB
T ss_pred             EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEe
Confidence            9999999999999999875421             01111233332   2233332 111  123577899999997654


Q ss_pred             c
Q psy12132        113 A  113 (126)
Q Consensus       113 ~  113 (126)
                      |
T Consensus       169 p  169 (239)
T 3tv3_H          169 P  169 (239)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.14  E-value=4.9e-10  Score=59.14  Aligned_cols=70  Identities=17%  Similarity=0.309  Sum_probs=52.5

Q ss_pred             ceeccCCccEEEEEEeeecCC------CeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP------AKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~------~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~   61 (126)
                      .+.+.+|+++.|.|.+.+.+.      +.+.|++..     ..+.         ...++..........|.|.+++..|+
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   89 (114)
T 1eeq_A           10 SLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDV   89 (114)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcccC
Confidence            467889999999999976652      679999842     1121         13466655445567899999999999


Q ss_pred             EEEEEEEecC
Q psy12132         62 GNYMCQASNN   71 (126)
Q Consensus        62 g~y~C~~~~~   71 (126)
                      |.|.|.+.+.
T Consensus        90 G~Y~C~~~~~   99 (114)
T 1eeq_A           90 AVYYCQQYYS   99 (114)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeeC
Confidence            9999998764

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.14  E-value=5.7e-10  Score=61.47  Aligned_cols=70  Identities=19%  Similarity=0.385  Sum_probs=53.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|++++|.|.+.+.+.+.+.|++..     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        25 ~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~C~  104 (146)
T 2yc1_B           25 TLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQ  104 (146)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHCEEEEEE
Confidence            356889999999999987777789999843     1221         12466655444567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus       105 ~~~~  108 (146)
T 2yc1_B          105 QYRY  108 (146)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8865

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.14  E-value=1.9e-10  Score=68.47  Aligned_cols=70  Identities=23%  Similarity=0.434  Sum_probs=53.0

Q ss_pred             eeccCCccEEEEEEeeecCCC----eeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA----KVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~----~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|+++.|.|.+.+.+.+    .+.|+++  +..+.            ...++..........|.|.+++..|.|.|
T Consensus       143 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y  222 (253)
T 3uzq_A          143 LAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATY  222 (253)
T ss_dssp             EEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEE
Confidence            567889999999999988776    8999984  21111            12455554455566899999999999999


Q ss_pred             EEEEecCC
Q psy12132         65 MCQASNNL   72 (126)
Q Consensus        65 ~C~~~~~~   72 (126)
                      .|.+.+..
T Consensus       223 ~C~~~n~~  230 (253)
T 3uzq_A          223 FCQRSNEV  230 (253)
T ss_dssp             EEEECSSS
T ss_pred             EEEEccCC
Confidence            99998753

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.14  E-value=1.4e-10  Score=66.04  Aligned_cols=64  Identities=9%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+.+|+++.|.|.+.+. .+.+.|++++..+.......    .....|.|.++...|.|.|+|.+.|..
T Consensus       104 ~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPER----WYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             SSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCE----EEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             eecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCC----CceEEEEEccCCccCCeEEEEEEEeCC
Confidence            45679999999998754 56999999987665422211    112368899999999999999999864

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.14  E-value=1.2e-09  Score=65.16  Aligned_cols=70  Identities=14%  Similarity=0.367  Sum_probs=50.1

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC--E---Ee---c-----------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG--T---AI---T-----------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~--~---~~---~-----------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      ++.+.+|+++.|.|.+.+.  ....+.|++..  .   .+   .           ...++.+..+  .....|.|.+++.
T Consensus         8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   87 (248)
T 3u2s_H            8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRV   87 (248)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCH
Confidence            4678899999999999752  34579998732  1   11   0           1245655433  3456899999999


Q ss_pred             CCCEEEEEEEecC
Q psy12132         59 TDFGNYMCQASNN   71 (126)
Q Consensus        59 ~d~g~y~C~~~~~   71 (126)
                      .|+|.|.|.+.+.
T Consensus        88 ~DsG~Y~C~~~~~  100 (248)
T 3u2s_H           88 EDTATYFCVREAG  100 (248)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             HHCEEEEEEEeCC
Confidence            9999999998763

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.14  E-value=1.7e-10  Score=65.91  Aligned_cols=63  Identities=11%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+|+++.|.|.+.+ +.+.+.|+|++..+..    ..........|.|.+++..|.|.|+|.+.+.
T Consensus       109 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~  171 (188)
T 1oll_A          109 EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  171 (188)
T ss_dssp             EEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEE
T ss_pred             ccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcC
Confidence            4578999999999875 4678999998865432    1112234568999999999999999998874

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.13  E-value=6.9e-10  Score=58.54  Aligned_cols=69  Identities=23%  Similarity=0.368  Sum_probs=51.4

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E----EeccCCcEEEEec--CCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T----AITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~----~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      .+.+.+|+++.|.|.+.+.+  .+.+.|+++.  .    .+....++....+  .....|.|.+++..|+|.|.|.+.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N            9 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             cEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            36788999999999997655  5689999852  2    1222356654422  3457899999999999999999876

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.13  E-value=1.8e-10  Score=71.43  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             ccCCccEEEEEEeeec-CC-CeeEEEECCEEeccC-CcEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYAN-PP-AKVEWFRDGTAITLG-GRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +..|+.+.|.|.+.+. |. +.+.|++++..+... .......++   ....|.|..+...| |.|+|.+.|..+..
T Consensus       132 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          132 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             TTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             ccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            4579999999999887 54 699999988653210 000000111   11368898888778 99999999887654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.13  E-value=4e-10  Score=60.82  Aligned_cols=73  Identities=15%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEEC--C---EEe-c---------cCCcEEEEe--cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFRD--G---TAI-T---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~~--~---~~~-~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|...+.. ...+.|++.  +   ..+ .         ...++....  ......|.|.+++..|+|.
T Consensus        10 ~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~   89 (129)
T 3rrq_A           10 LLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT   89 (129)
T ss_dssp             EEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             EEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEE
Confidence            36778999999999997654 457899873  2   111 1         123665552  3346789999999999999


Q ss_pred             EEEEEecCCce
Q psy12132         64 YMCQASNNLGS   74 (126)
Q Consensus        64 y~C~~~~~~~~   74 (126)
                      |.|.+.+..+.
T Consensus        90 Y~C~~~~~~~~  100 (129)
T 3rrq_A           90 YLCGAISLAPK  100 (129)
T ss_dssp             EEEEEEECGGG
T ss_pred             EEEEEEecCCC
Confidence            99999876543

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=99.12  E-value=3.6e-09  Score=61.46  Aligned_cols=109  Identities=10%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEECC-----EEec-------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRDG-----TAIT-------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~~-----~~~~-------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|+++.|.|.+.+ .....+.|++..     ..+.       ...++....  ......|.|.+++..|.|.|.|
T Consensus         8 ~~~v~~G~~v~L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C   87 (206)
T 1kgc_D            8 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC   87 (206)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEEcCCCCCccEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEECCCCcccCccEEE
Confidence            356789999999999965 334579998742     1121       134666543  2345689999999999999999


Q ss_pred             EEecC---------CceeEEEEEEEecC--CCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         67 QASNN---------LGSSQQFIQLSGIP--NIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        67 ~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .+.+.         .|. ...+.+....  ..|......  .....+.|+|...+..|
T Consensus        88 ~~~~~~~~~~~~~~~g~-gt~L~V~~~~~~~~P~V~~~~--~~~~~v~L~C~~~g~~P  142 (206)
T 1kgc_D           88 ILPLAGGTSYGKLTFGQ-GTILTVHPNIQNPDPAVYQLR--DSKSSDKSVCLFTDFDS  142 (206)
T ss_dssp             ECCCCSTTCCCCCCCCC-CEEEEEECCCSSCCCEEEECC--CCTTCCCEEEEEESCCT
T ss_pred             EEecccCCCcccceECC-CEEEEEeCCCCCCCCeEEeec--CCCCCeEEEEEeeceec
Confidence            98753         111 2234443221  222222111  12237799999976543

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.12  E-value=1.8e-10  Score=60.37  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             ceeccCCccEEEEEEeeecCCC-----eeEEEECCEE-e---cc------------CCcEEEEecCCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-----KVEWFRDGTA-I---TL------------GGRIDMHVSSEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-----~~~w~~~~~~-~---~~------------~~~~~~~~~~~~~~l~i~~~~~~d   60 (126)
                      ++.+..|+++.|.|.+.+.|.+     .+.|++++.. +   ..            ..+..+..  .+..|.|.+++..|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~sL~I~~v~~~D   80 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS--DSWTLRLHNLQIKD   80 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET--TTTEEEECSCCGGG
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC--CCEEEEEcCCChHH
Confidence            4678899999999998765543     3999996531 1   00            12333322  23589999999999


Q ss_pred             CEEEEEEEecCCceeEEEEE
Q psy12132         61 FGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus        61 ~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .|.|.|.+.+..+.....+.
T Consensus        81 ~G~Y~C~v~~~~~~~~~~~~  100 (110)
T 1ncn_A           81 KGLYQCIIHHKKPTGMIRIH  100 (110)
T ss_dssp             CEEEEEEEEEECSSSEEEEE
T ss_pred             CEEEEEEEEcCCCCceEEEE
Confidence            99999999876555444333

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.12  E-value=3.6e-10  Score=66.08  Aligned_cols=68  Identities=24%  Similarity=0.414  Sum_probs=49.4

Q ss_pred             eccCCccE-EEEEEe-eecCCCeeEEEECCEEeccCC----cEEEEecC-----C----eEEEEEecCCCCCCEEEEEEE
Q psy12132          4 ITAPDMRA-EIICNV-YANPPAKVEWFRDGTAITLGG----RIDMHVSS-----E----KHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         4 ~~~~g~~~-~l~C~~-~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~-----~----~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      .+..|+.+ .|.|.+ .+.|.|.+.|++++..+....    ++.+....     +    ...|.+.....+|.|.|+|.+
T Consensus       129 ~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a  208 (231)
T 2pet_A          129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAA  208 (231)
T ss_dssp             CTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEE
T ss_pred             eecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEE
Confidence            35578877 999999 899999999999998876544    33332210     0    145777755556699999999


Q ss_pred             ecC
Q psy12132         69 SNN   71 (126)
Q Consensus        69 ~~~   71 (126)
                      .|.
T Consensus       209 ~n~  211 (231)
T 2pet_A          209 HYS  211 (231)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            984

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.12  E-value=1.4e-09  Score=58.50  Aligned_cols=70  Identities=27%  Similarity=0.477  Sum_probs=51.8

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEEC--CE----EeccCCcEEEEec--CCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRD--GT----AITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~--~~----~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+.+|++++|.|...+.  +.+.+.|++.  +.    .+....++....+  .....|.|.+++..|+|.|.|.+.+.
T Consensus         9 ~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   88 (126)
T 3moq_A            9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV   88 (126)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEc
Confidence            3567889999999999765  4568999983  21    2233456654332  24678999999999999999998764

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.12  E-value=6.8e-10  Score=59.40  Aligned_cols=84  Identities=23%  Similarity=0.358  Sum_probs=56.3

Q ss_pred             ceeccCCccEEEEEEeeecCCC---eeEEEECCEE-----ec---c----------CCcEEEEe---cCCeEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPPA---KVEWFRDGTA-----IT---L----------GGRIDMHV---SSEKHSLLVRHIK   57 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~-----~~---~----------~~~~~~~~---~~~~~~l~i~~~~   57 (126)
                      .+.+..|+++.|.|.+.+.+..   .+.|+|....     +.   .          ..|+.+..   ...+.+|.|.+++
T Consensus         9 ~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   88 (123)
T 4gjt_B            9 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV   88 (123)
T ss_dssp             EEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCC
T ss_pred             EEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCC
Confidence            4678899999999998765543   5789985311     10   0          12333221   1124579999999


Q ss_pred             CCCCEEEEEEEec-CCceeEEEEEEEecC
Q psy12132         58 DTDFGNYMCQASN-NLGSSQQFIQLSGIP   85 (126)
Q Consensus        58 ~~d~g~y~C~~~~-~~~~~~~~~~l~~~~   85 (126)
                      ..|+|.|.|.+.+ ..|.....+.|.|..
T Consensus        89 ~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE  117 (123)
T 4gjt_B           89 QADEGEYECRVSTFPAGSFQARLRLRVLE  117 (123)
T ss_dssp             SSSCSEEEEEEEESSSCEEEEEEEEEC--
T ss_pred             hHHCEEEEEEEEECCCCeEEeEEEEEEEE
Confidence            9999999998875 566777777777653

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.12  E-value=4.8e-11  Score=72.70  Aligned_cols=116  Identities=12%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             ccCCccEEEEEEeeecCCC---eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce-------
Q psy12132          5 TAPDMRAEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-------   74 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-------   74 (126)
                      +.+|+.++|.|.+.+..++   ++.|++++..+.....   ........+.+.....++.+.|+|.+.+..+.       
T Consensus        98 ~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~  174 (291)
T 1mq8_A           98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE  174 (291)
T ss_dssp             CCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEE
T ss_pred             ccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCcccc
Confidence            6679999999999765443   5899999977643210   01112235666666555666999999976442       


Q ss_pred             -eEEEEEEEecCCCCe---eccCcceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         75 -SQQFIQLSGIPNIPV---FQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        75 -~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                       ......|.+...|+.   ...+.....++.+.|+|...+.+|.....++|+.
T Consensus       175 ~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~  227 (291)
T 1mq8_A          175 NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (291)
T ss_dssp             ECCCCEECBC-------------------------------------------
T ss_pred             ccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEE
Confidence             123344444323222   1111123468899999999988776555566654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.11  E-value=4.9e-10  Score=67.82  Aligned_cols=68  Identities=22%  Similarity=0.444  Sum_probs=52.9

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE--CCEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+.+ +.+.|++  ++..+.            ...++..........|.|.+++..|.|.|.|.+
T Consensus       172 ~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a  250 (282)
T 1qok_A          172 MSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQ  250 (282)
T ss_dssp             EEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEE
Confidence            4577899999999999888 8999999  443321            134555544445668999999999999999999


Q ss_pred             ecC
Q psy12132         69 SNN   71 (126)
Q Consensus        69 ~~~   71 (126)
                      .+.
T Consensus       251 ~~~  253 (282)
T 1qok_A          251 RSS  253 (282)
T ss_dssp             CSS
T ss_pred             eeC
Confidence            874

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.11  E-value=5e-09  Score=61.60  Aligned_cols=119  Identities=14%  Similarity=0.196  Sum_probs=71.8

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC-----EEe-c-------------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG-----TAI-T-------------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~-----~~~-~-------------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.  ....+.|++..     ..+ .             ...++.+..+.  ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            3668899999999999752  34579998732     111 0             12456554433  456799999999


Q ss_pred             CCCEEEEEEEecCC-----c---eeEEEEEEEec---CCCCeec-cC--cceeCCCeeEEEEEEccCCcceeEEEEE
Q psy12132         59 TDFGNYMCQASNNL-----G---SSQQFIQLSGI---PNIPVFQ-KS--SRRLGPDGYRLVWQVDTYSAIIQYLLKF  121 (126)
Q Consensus        59 ~d~g~y~C~~~~~~-----~---~~~~~~~l~~~---~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~  121 (126)
                      .|+|.|.|.+.+..     +   .......+.+.   ..+|.+. ..  .....+..+.|.|.+.+..|. ...+.|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~-~~~v~W  164 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSW  164 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSS-CCEEEE
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECC-CEEEEE
Confidence            99999999998753     1   11122234432   1233222 11  112357789999999765442 124455

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.10  E-value=1.5e-09  Score=57.20  Aligned_cols=70  Identities=17%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             ceeccCCccEEEEEEeeecC-----CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANP-----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|++++|.|.+.+.+     .+.+.|++..  .   .+.         ...++..........|.|.+++..|+|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   89 (113)
T 1dlf_L           10 SLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   89 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHHCE
Confidence            46788999999999997655     3679998842  1   121         124665554455678999999999999


Q ss_pred             EEEEEEecC
Q psy12132         63 NYMCQASNN   71 (126)
Q Consensus        63 ~y~C~~~~~   71 (126)
                      .|.|.+.+.
T Consensus        90 ~Y~C~~~~~   98 (113)
T 1dlf_L           90 VYFCSQSTH   98 (113)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEecC
Confidence            999998764

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.10  E-value=4.2e-10  Score=60.49  Aligned_cols=70  Identities=19%  Similarity=0.365  Sum_probs=52.7

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|++++|.|.+.+.+    .+.+.|++..     ..+.         ...++..........|.|.+++..|+|.
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~DsG~   89 (126)
T 4ffy_L           10 SLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAAT   89 (126)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHCEE
Confidence            36788999999999998665    4579999842     1111         1246655545556789999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+.+.
T Consensus        90 Y~C~~~~~   97 (126)
T 4ffy_L           90 YYCQQNNE   97 (126)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEecC
Confidence            99998874

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.10  E-value=5.9e-10  Score=66.48  Aligned_cols=69  Identities=23%  Similarity=0.446  Sum_probs=53.0

Q ss_pred             eeccCCccEEEEEEeeecCC-CeeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPP-AKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +.+.+|+++.|.|.+.+.+. +.+.|++.  +..+.            ...++.....+....|.|.+++..|.|.|.|.
T Consensus       159 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  238 (256)
T 3juy_B          159 LSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQ  238 (256)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEE
Confidence            46788999999999988776 89999982  22111            22456555555567899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus       239 ~~~~  242 (256)
T 3juy_B          239 VYGA  242 (256)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9874

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.09  E-value=3.7e-09  Score=62.19  Aligned_cols=112  Identities=13%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             ceeccCCccEEEEEEeeecC--CCee--EEEECC-----EEe-----c-----------cCCcEEEEec--CCeEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKV--EWFRDG-----TAI-----T-----------LGGRIDMHVS--SEKHSLLVR   54 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~--~w~~~~-----~~~-----~-----------~~~~~~~~~~--~~~~~l~i~   54 (126)
                      .+.+.+|+++.|.|.+.+.+  ...+  .|++..     ..+     .           ...++.+..+  .....|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT   88 (232)
T ss_dssp             CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence            35678899999999997532  2445  998732     111     0           0135555433  245689999


Q ss_pred             cCCCCCCEEEEEEEecCC--------ceeEEEEEEEec---CCCCeec-cCc--ceeCCCeeEEEEEEccCCc
Q psy12132         55 HIKDTDFGNYMCQASNNL--------GSSQQFIQLSGI---PNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        55 ~~~~~d~g~y~C~~~~~~--------~~~~~~~~l~~~---~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      +++..|.|.|.|.+.+..        ........+.+.   ..+|.+. ..+  ....++.+.|+|.+.+..|
T Consensus        89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P  161 (232)
T 3qhz_H           89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  161 (232)
T ss_dssp             SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBS
T ss_pred             cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeC
Confidence            999999999999998652        112222233432   2233332 211  1235778999999976544

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.09  E-value=2.8e-09  Score=58.51  Aligned_cols=70  Identities=19%  Similarity=0.419  Sum_probs=53.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|++++|.|.+...+...+.|++..     ..+.         ...++..........|.|.+++..|+|.|.|.
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~   88 (143)
T 3u6r_L            9 TLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFAVYYCQ   88 (143)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCEEEEEE
Confidence            367789999999999987666789999842     2221         13466655455667999999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus        89 ~~~~   92 (143)
T 3u6r_L           89 QRSD   92 (143)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8764

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.09  E-value=6.1e-10  Score=66.39  Aligned_cols=69  Identities=16%  Similarity=0.411  Sum_probs=52.3

Q ss_pred             eeccCCccEEEEEEeeecCCC-eeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-KVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +.+.+|+++.|.|.+.+.+.+ .+.|+++  +..+.            ...++..........|.|.+++..|.|.|.|.
T Consensus       151 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  230 (257)
T 3gkz_A          151 MSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCH  230 (257)
T ss_dssp             EEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEE
Confidence            567789999999999988777 8999983  22111            02455554444566899999999999999999


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +.+.
T Consensus       231 ~~~~  234 (257)
T 3gkz_A          231 QWSS  234 (257)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            9874

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.09  E-value=1.5e-09  Score=62.24  Aligned_cols=63  Identities=16%  Similarity=0.226  Sum_probs=46.4

Q ss_pred             CCc-cEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCC-CCEEEEEEEecCCceeEEEEE
Q psy12132          7 PDM-RAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         7 ~g~-~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      .|. ++.|.|.+.+. |.|.+.|++++..+....           .|.|...... |.|.|+|.+.|..|.....+.
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence            354 79999999985 478999999987653222           3555444444 899999999999887765543

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.09  E-value=4.1e-09  Score=61.41  Aligned_cols=111  Identities=14%  Similarity=0.287  Sum_probs=67.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEe-c--c------CCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAI-T--L------GGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~-~--~------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.....+.|++..     ..+ .  .      ..++....  ......|.|.+++..|.|.|.
T Consensus        12 ~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~   91 (210)
T 2eys_A           12 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   91 (210)
T ss_dssp             EEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEE
Confidence            356788999999999976666789999842     112 1  1      24555542  234568999999999999999


Q ss_pred             EEEecCC---ce----eEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCCcc
Q psy12132         66 CQASNNL---GS----SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        66 C~~~~~~---~~----~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      |.+.+..   ..    ....+.+...  +..|.......  ....+.|.|...+..|.
T Consensus        92 C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~--~~~~~tl~Cl~~gf~P~  147 (210)
T 2eys_A           92 CVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRD--SKSSDKSVCLFTDFDSQ  147 (210)
T ss_dssp             EEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECC--CSSSSCEEEEEESCCTT
T ss_pred             EEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCC--CCCCceEEEEcccccCC
Confidence            9988631   11    1123333221  12222222111  12267899999776543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.08  E-value=2.5e-09  Score=69.79  Aligned_cols=117  Identities=18%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             ccCCccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          5 TAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      +..|+.+.|.|.+.+..+  ..+.|++++..+....   ......++.   ...|.|......|.|.|+|.+.|..+...
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~  388 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ  388 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence            346999999999987633  3899999998754111   011111111   23688888888899999999998766443


Q ss_pred             -EEEEEEe-c--CCCCee-ccCcceeCCCeeE-EEEEEccCCcceeEEEEEEE
Q psy12132         77 -QFIQLSG-I--PNIPVF-QKSSRRLGPDGYR-LVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        77 -~~~~l~~-~--~~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~r~  123 (126)
                       ..+.... .  ..+|.. ...+.. .++.+. |.|.+.+..|.. ..+.|.+
T Consensus       389 ~~~~~~~~~~~~~~~p~v~~~~~~~-~~~~~~~L~C~~~g~~P~~-i~v~W~k  439 (512)
T 1zvo_C          389 RLMALREPAAQAPVKLSLNLLASSD-PPEAASWLLCEVSGFSPPN-ILLMWLE  439 (512)
T ss_pred             ceeEEeecCCCCCCCCEEEEEccCc-CCCCceEEEEEEeeeCCCC-cEEEEEE
Confidence             2222211 1  123332 222222 566788 999998754422 2344544

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.07  E-value=4.9e-10  Score=58.71  Aligned_cols=80  Identities=14%  Similarity=0.267  Sum_probs=55.4

Q ss_pred             ceeccCCccEEEEEEe-eecCCCeeEEEEC-CEEec--------------cCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNV-YANPPAKVEWFRD-GTAIT--------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~-~~~~~--------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|.. .+.+.+.+.|++. +..+.              ...++.+..  ....|.|.+++..|+|.|.
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~--~~~sL~I~~v~~~DsG~Y~   89 (110)
T 2ptt_A           12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE--NNGALHISNVRKEDKGTYY   89 (110)
T ss_dssp             SEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT--TTCCEEESSCCGGGCEEEE
T ss_pred             CEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC--CCccEEECCCCcccCeEEE
Confidence            3678899999999998 6666779999983 22111              012444321  3457999999999999999


Q ss_pred             EEEecCCceeEEEEEEEec
Q psy12132         66 CQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        66 C~~~~~~~~~~~~~~l~~~   84 (126)
                      |.+.+.. .....+.|.|.
T Consensus        90 C~v~~~~-~~~~~~~L~V~  107 (110)
T 2ptt_A           90 MRVLRET-ENELKITLEVF  107 (110)
T ss_dssp             EEEESSS-BCCEEEEEEEE
T ss_pred             EEEEcCC-CcEEEEEEEEE
Confidence            9998754 33445555553

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=99.07  E-value=4.2e-09  Score=61.41  Aligned_cols=110  Identities=11%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECC-----EEec----------cCCcEEEEe--cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDG-----TAIT----------LGGRIDMHV--SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~-----~~~~----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|...+.... .+.|++..     ..+.          ...++....  ......|.|.+++..|.|.
T Consensus        12 ~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~   91 (211)
T 2ak4_D           12 EISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAV   91 (211)
T ss_dssp             EEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             EEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccCce
Confidence            3567889999999999765444 79998742     1121          124555542  2345789999999999999


Q ss_pred             EEEEEecCC--c--e--eEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         64 YMCQASNNL--G--S--SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        64 y~C~~~~~~--~--~--~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.+.+..  .  .  ....+.+...  +..|.......  ....+.|.|...+..|
T Consensus        92 Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~--~~~~vtL~Cl~~gf~P  147 (211)
T 2ak4_D           92 YFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRD--SKSSDKSVCLFTDFDS  147 (211)
T ss_dssp             EEEEEECSBTTSCCEECCCEEEEEECCCSSCCCEEEEEBC--CSSSCCEEEEEESCCT
T ss_pred             EEEEEEcCCCcceeeECCCEEEEEeCcCCCCCCEEEEccC--CCCceEEEEEeeeecC
Confidence            999987631  0  1  1123333322  12222221111  2236799999977543

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-09  Score=58.77  Aligned_cols=71  Identities=21%  Similarity=0.339  Sum_probs=49.2

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCE----EeccC-----CcEEEEe-----cCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGT----AITLG-----GRIDMHV-----SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~----~~~~~-----~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|++++|.|.+.+. +.+.+.|+++..    .+...     .++....     ......|.|.+++..|.|.|.|
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   96 (136)
T 2d9c_A           17 SVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYC   96 (136)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            3677889999999999765 456899999651    12111     1222110     1124589999999999999999


Q ss_pred             EEecCC
Q psy12132         67 QASNNL   72 (126)
Q Consensus        67 ~~~~~~   72 (126)
                      .+.+..
T Consensus        97 ~~~~~~  102 (136)
T 2d9c_A           97 VKFRKG  102 (136)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            988643

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.06  E-value=7.7e-09  Score=65.39  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=74.6

Q ss_pred             ceeccCCccEEEEEEeeecC--------------CCeeEEEEC--CE--E--eccCC----------c-EEEE-------
Q psy12132          2 HSITAPDMRAEIICNVYANP--------------PAKVEWFRD--GT--A--ITLGG----------R-IDMH-------   43 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--------------~~~~~w~~~--~~--~--~~~~~----------~-~~~~-------   43 (126)
                      .+.+.+|++++|.|.....+              ...+.|++.  +.  .  +....          + ..+.       
T Consensus       167 sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~~  246 (401)
T 3f8u_B          167 APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEP  246 (401)
T ss_dssp             SCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCCS
T ss_pred             cEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccccc
Confidence            35678899999999986443              246899863  32  1  11111          1 1111       


Q ss_pred             --ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEecCCCCeeccCcc---eeCCC-eeEEEEEEccCCcceeE
Q psy12132         44 --VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSR---RLGPD-GYRLVWQVDTYSAIIQY  117 (126)
Q Consensus        44 --~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~l~~~~~~~~~~~~~  117 (126)
                        ...++.+|.|.+++..|.|.|.|.+.+..+.....+.+.+...|.+......   ...++ .+.|+|.+.+..|....
T Consensus       247 ~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~  326 (401)
T 3f8u_B          247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGL  326 (401)
T ss_dssp             SCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTC
T ss_pred             ccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCc
Confidence              0123578999999999999999999988777777777776543333222111   12343 68999999877554112


Q ss_pred             EEEE
Q psy12132        118 LLKF  121 (126)
Q Consensus       118 ~~~~  121 (126)
                      .+.|
T Consensus       327 ~VtW  330 (401)
T 3f8u_B          327 EVEW  330 (401)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3455

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.06  E-value=2.8e-09  Score=67.06  Aligned_cols=118  Identities=12%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             ccCCccEEEEEEeeec-CCC---eeEEEECCEEeccCC--cEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYAN-PPA---KVEWFRDGTAITLGG--RIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~~---~~~w~~~~~~~~~~~--~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +..|+++.|.|.+.+. |.|   .+.|++++..+....  ......++   ....|.|..+...|.|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            5678999999999877 323   699999875542111  00000111   23478999999999999999999876533


Q ss_pred             EEEEEEEe---cCCCCeeccCcc---eeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         76 QQFIQLSG---IPNIPVFQKSSR---RLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        76 ~~~~~l~~---~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .....+..   ...+|.+...+.   ...++.+.|+|.+.+..|.. ..+.|.+
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~-i~v~W~k  312 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPED-ITVEWQW  312 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCC-cEEEEEE
Confidence            22222211   222333222111   23466799999997754421 2444544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.06  E-value=3.8e-10  Score=65.37  Aligned_cols=73  Identities=19%  Similarity=0.340  Sum_probs=51.9

Q ss_pred             CCccEEEEEEeeec-CC-CeeEEEECCEEeccCCcE--EEEecC---CeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          7 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRI--DMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~--~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      .|+.+.|.|.+.+. |+ +.+.|++++..+......  ....++   ....|.|..+...|.|.|+|.+.|..+.....+
T Consensus       128 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          128 KTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            69999999999885 33 499999999887532100  000111   123588999999999999999999876555544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.05  E-value=1.1e-09  Score=69.89  Aligned_cols=107  Identities=15%  Similarity=0.119  Sum_probs=67.4

Q ss_pred             ccCCccEEEEEEeeec-CCC-eeEEEECCEEeccCCcEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          5 TAPDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +.+|+.+.|.|.+.+. |.+ .+.|++++..+...........+   ....|.|..+...| |.|+|.+.|..+......
T Consensus       131 ~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~  209 (434)
T 1igy_B          131 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDK  209 (434)
T ss_dssp             CCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEE
T ss_pred             cCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcccee
Confidence            3579999999999886 666 99999987642110000000001   11368899998888 999999999887654333


Q ss_pred             EEEec-----------CC-CCeeccCc--c--eeCCCeeEEEEEEccCC
Q psy12132         80 QLSGI-----------PN-IPVFQKSS--R--RLGPDGYRLVWQVDTYS  112 (126)
Q Consensus        80 ~l~~~-----------~~-~~~~~~~~--~--~~~~~~~~l~~~~~~~~  112 (126)
                      .+.+.           .. +.++...+  .  ...++.+.|.|...+..
T Consensus       210 ~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~  258 (434)
T 1igy_B          210 KIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDIS  258 (434)
T ss_dssp             ECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCC
T ss_pred             eccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccc
Confidence            33221           00 23322222  1  35688899999998764

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=99.05  E-value=3.1e-09  Score=61.20  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.....+.|++..  .   .+.         ...++....  ......|.|.+++..|.|.|.
T Consensus        10 ~v~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~   89 (194)
T 1lp9_E           10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYY   89 (194)
T ss_dssp             EEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEE
Confidence            356788999999999976666789998742  1   121         124555432  223458999999999999999


Q ss_pred             EEEec
Q psy12132         66 CQASN   70 (126)
Q Consensus        66 C~~~~   70 (126)
                      |.+.+
T Consensus        90 C~~~~   94 (194)
T 1lp9_E           90 CALFL   94 (194)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99876

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.05  E-value=7.8e-09  Score=60.66  Aligned_cols=119  Identities=16%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEECC-----EEe---c-----------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRDG-----TAI---T-----------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~~-----~~~---~-----------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|.+.+.  ....+.|++..     ..+   .           ...++.+..+.  ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            3578899999999999653  34579998732     111   0           11355554322  456899999999


Q ss_pred             CCCEEEEEEEecCCc---------eeEEEEEEEec---CCCCeec-cCc--ceeCCCeeEEEEEEccCCcceeEEEEE
Q psy12132         59 TDFGNYMCQASNNLG---------SSQQFIQLSGI---PNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSAIIQYLLKF  121 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~---------~~~~~~~l~~~---~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~  121 (126)
                      .|.|.|.|.+.+..+         .......+.+.   ..+|.+. ..+  ....+..+.|+|.+.+..|. ...+.|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~v~W  165 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSW  165 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSS-CCEEEE
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECC-CeEEEE
Confidence            999999999875321         00111233332   1233222 111  12356789999999765442 124455

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=99.05  E-value=5.9e-09  Score=60.31  Aligned_cols=111  Identities=12%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec-c-------CCcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT-L-------GGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~-~-------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|+++.|.|...+.....+.|++..  .   .+. .       ..++....  ......|.|.+++..|.|.|.|
T Consensus         8 ~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C   87 (200)
T 2nw2_A            8 EMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLC   87 (200)
T ss_dssp             EEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             eEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEE
Confidence            356789999999999876656689998742  1   221 1       34555542  2345689999999999999999


Q ss_pred             EEecC--Cc--e--eEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCCcc
Q psy12132         67 QASNN--LG--S--SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSAI  114 (126)
Q Consensus        67 ~~~~~--~~--~--~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (126)
                      .+.+.  .+  .  ....+.+...  +..|......  .....+.|.|...+..|.
T Consensus        88 ~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~--~~~~~~tl~Cl~~gf~P~  141 (200)
T 2nw2_A           88 AVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLR--DSKSSDKSVCLFTDFDSQ  141 (200)
T ss_dssp             EEC---CCCCCEECCCEEEEEECCCSSCCCEEEEEE--ECC--CCEEEEEESCCTT
T ss_pred             EEEcCCcceeeeeCCCEEEEEecCcccCCCeEEEcC--CCCCCceEEEEeecccCC
Confidence            98651  11  1  1123333321  1222222111  122267899999776553

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.05  E-value=4e-09  Score=67.68  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             ccCCccEEEEEEeeecCCC----eeEEEECCEEeccCCcEEE--EecCCeEEEEEecCCCCC---CEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYANPPA----KVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD---FGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~----~~~w~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d---~g~y~C~~~~~~~~~   75 (126)
                      +.+|+++.|.|.+.+.+++    .+.|++++..+........  ..++.........+...|   .|.|+|.+.|..+..
T Consensus       261 ~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred             cccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence            4569999999999987553    8999999987653221111  111211111122234455   999999999765544


Q ss_pred             EEEEEEEe---cCCCCeec-cCcc--eeCCCeeEEEEEEccCCc
Q psy12132         76 QQFIQLSG---IPNIPVFQ-KSSR--RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        76 ~~~~~l~~---~~~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~  113 (126)
                      .....+.+   ...+|.+. ....  ...+..+.|.|...+..|
T Consensus       341 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p  384 (457)
T 1hzh_H          341 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYP  384 (457)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             cceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEEEeEEC
Confidence            33333322   12233322 2111  123445999999977544

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.04  E-value=3e-09  Score=64.13  Aligned_cols=69  Identities=14%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECC--EE---ec--------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT--------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~~--------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+.+.+  .+.+.|++++  ..   +.              ...++.+..+  .....|.|.+++..
T Consensus       144 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  223 (276)
T 3auv_A          144 GLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAE  223 (276)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChh
Confidence            4577899999999998776  4899999952  11   10              1245555433  23458999999999


Q ss_pred             CCEEEEEEEecC
Q psy12132         60 DFGNYMCQASNN   71 (126)
Q Consensus        60 d~g~y~C~~~~~   71 (126)
                      |.|.|.|.+.|.
T Consensus       224 DsG~Y~C~a~n~  235 (276)
T 3auv_A          224 DTAVYYCARFVF  235 (276)
T ss_dssp             GCEEEEEEEECS
T ss_pred             HCEEEEEEEEcC
Confidence            999999999986

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.04  E-value=9.8e-09  Score=67.01  Aligned_cols=112  Identities=21%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             ceeccCCccEEEEEEeeecCC----CeeEEEEC--CE---Eec-------------cCCcEEEEec--CCeEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP----AKVEWFRD--GT---AIT-------------LGGRIDMHVS--SEKHSLLVRHIK   57 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~----~~~~w~~~--~~---~~~-------------~~~~~~~~~~--~~~~~l~i~~~~   57 (126)
                      .+.+.+|+++.|.|.+.+.+.    ..+.|+++  +.   .+.             ...++.+..+  .....|.|.+++
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   88 (512)
T 1zvo_C            9 PGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMS   88 (512)
T ss_pred             CEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCC
Confidence            467889999999999976543    67999985  22   110             1245555432  235789999999


Q ss_pred             CCCCEEEEEEEecCCc-----------e--eEEEEEEEecC---CCCeec-cCcc---eeCCCeeEEEEEEccCCc
Q psy12132         58 DTDFGNYMCQASNNLG-----------S--SQQFIQLSGIP---NIPVFQ-KSSR---RLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        58 ~~d~g~y~C~~~~~~~-----------~--~~~~~~l~~~~---~~~~~~-~~~~---~~~~~~~~l~~~~~~~~~  113 (126)
                      ..|.|.|.|.+.+..+           .  ......|.|..   .+|.+. ..+.   ...+..+.|+|.+.+..|
T Consensus        89 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           89 AADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             HHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence            9999999999887532           0  11223444431   233222 1111   123478999999977644

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=99.04  E-value=6.3e-09  Score=56.49  Aligned_cols=68  Identities=19%  Similarity=0.391  Sum_probs=53.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC---CEE---e-ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD---GTA---I-TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~---~~~---~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +.+.+|++++|.|...+. ...+.|++.   +..   + ....++..........|.|.+++..|+|.|.|.+.+.
T Consensus        28 ~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  102 (134)
T 3kg5_A           28 IARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCN  102 (134)
T ss_dssp             EEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECT
T ss_pred             EEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcC
Confidence            567889999999999765 578999987   322   1 2345776665556779999999999999999998875

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=99.04  E-value=6.6e-09  Score=54.85  Aligned_cols=70  Identities=16%  Similarity=0.338  Sum_probs=51.7

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC--C---EEe-c--c----------CCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD--G---TAI-T--L----------GGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~---~~~-~--~----------~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|+++.|.|...+. +...+.|++.  +   ..+ .  .          ..++..........|.|.+++..|.|
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~Dsg   89 (115)
T 2otu_A           10 SASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   89 (115)
T ss_dssp             CEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCChhHCE
Confidence            4678899999999998754 5678999873  1   111 1  1          23565554445678999999999999


Q ss_pred             EEEEEEecC
Q psy12132         63 NYMCQASNN   71 (126)
Q Consensus        63 ~y~C~~~~~   71 (126)
                      .|.|.+.+.
T Consensus        90 ~Y~C~~~~~   98 (115)
T 2otu_A           90 IYICGVGDT   98 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999998764

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.61  E-value=2.2e-11  Score=64.03  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=51.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCE--Ee------------ccCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGT--AI------------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~--~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|.+.+.+.+.+.|++...  .+            ....++.+..  ......|.|.+++..|.|.|.
T Consensus         8 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   87 (110)
T 1u3h_A            8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF   87 (110)
Confidence            3567889999999999877778899998531  11            1123444433  223458999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        88 C~~~~~   93 (110)
T 1u3h_A           88 CAASAN   93 (110)
Confidence            998764

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=99.04  E-value=2.3e-09  Score=57.92  Aligned_cols=70  Identities=19%  Similarity=0.405  Sum_probs=49.9

Q ss_pred             ceeccCCccEEEEEEeee-------cCCCeeEEEECCE------Eecc-----------CCcEEEEec--CCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYA-------NPPAKVEWFRDGT------AITL-----------GGRIDMHVS--SEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-------~p~~~~~w~~~~~------~~~~-----------~~~~~~~~~--~~~~~l~i~~   55 (126)
                      .+.+.+|+++.|.|....       .....+.|++...      .+..           ..++.+..+  ....+|.|.+
T Consensus        15 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   94 (132)
T 1nko_A           15 SVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD   94 (132)
T ss_dssp             EEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcc
Confidence            367889999999999872       3456899998643      1211           145555432  2356899999


Q ss_pred             CCCCCCEEEEEEEecC
Q psy12132         56 IKDTDFGNYMCQASNN   71 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~   71 (126)
                      ++..|+|.|.|.+.+.
T Consensus        95 v~~~DsG~Y~C~v~~~  110 (132)
T 1nko_A           95 ARMSDAGRYFFRMEKG  110 (132)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             cCcccCeeEEEEEEcC
Confidence            9999999999998764

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=99.04  E-value=9.5e-09  Score=60.09  Aligned_cols=109  Identities=15%  Similarity=0.262  Sum_probs=65.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEe-c--------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAI-T--------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~-~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+. .....+.|++..     ..+ .        ...++....  ......|.|.+++..|.|.|.
T Consensus        10 ~v~v~~G~~vtL~C~~~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~   88 (215)
T 1oga_D           10 FLSIQEGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   88 (215)
T ss_dssp             EEEEETTCCEEEEEECS-SCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEEEEEc-CCCceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccCceEE
Confidence            35678999999999984 345679998742     111 1        124555542  234578999999999999999


Q ss_pred             EEEecCCce----eEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         66 CQASNNLGS----SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        66 C~~~~~~~~----~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.+....+.    ....+.+.+.  +..|.... . ......+.|+|...+..|
T Consensus        89 C~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~-~-~~~~~~vtL~C~~~gf~P  140 (215)
T 1oga_D           89 CAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQ-L-RDSKSSDKSVCLFTDFDS  140 (215)
T ss_dssp             EEEECTTSSEEECCCEEEEEECCCSSCCCEEEE-E-EBSSSSSCEEEEEESCCT
T ss_pred             EEEecccccceeCCCEEEEEeccCCCcCCEEEE-c-CCCCCCeEEEEEcccccc
Confidence            998753211    1223333332  12222211 1 112247899999977543

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.03  E-value=2.9e-09  Score=56.31  Aligned_cols=70  Identities=14%  Similarity=0.333  Sum_probs=51.2

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECC--E---Eec------------cCCcEEEEe--cCCeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDG--T---AIT------------LGGRIDMHV--SSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~--~---~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~   61 (126)
                      .+.+.+|++++|.|.+... +...+.|++..  .   .+.            ...++....  ......|.|.+++..|+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds   88 (116)
T 1tvd_A            9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS   88 (116)
T ss_dssp             CEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             cEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHC
Confidence            4678899999999998754 45679998742  1   111            134665543  33456899999999999


Q ss_pred             EEEEEEEecC
Q psy12132         62 GNYMCQASNN   71 (126)
Q Consensus        62 g~y~C~~~~~   71 (126)
                      |.|.|.+.+.
T Consensus        89 G~Y~C~~~~~   98 (116)
T 1tvd_A           89 ATYYCAFTLP   98 (116)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEeCC
Confidence            9999998873

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.03  E-value=1.2e-09  Score=63.21  Aligned_cols=71  Identities=7%  Similarity=0.138  Sum_probs=48.2

Q ss_pred             eccCCccEEEEEEeeecCC---CeeEEEECCEEeccCCcEEE-E---ecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          4 ITAPDMRAEIICNVYANPP---AKVEWFRDGTAITLGGRIDM-H---VSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~---~~~~w~~~~~~~~~~~~~~~-~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      .+.+|+.+.|.|.+.+.++   +++.|++++..+........ .   .......|.+.....+|.|.|+|.+.|..+.
T Consensus       102 ~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             EEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            3568999999999987643   37899999987643210000 0   0011235678888888899999999987654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.03  E-value=1.7e-09  Score=64.33  Aligned_cols=63  Identities=11%  Similarity=0.234  Sum_probs=48.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+|++++|.|.+.+. .+.+.|+|++..+..    ..........|.|.+++..|.|.|+|.+.+.
T Consensus       112 ~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~  174 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  174 (242)
T ss_dssp             EEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             ccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECC
Confidence            45789999999998754 569999999865432    1122334568999999999999999999875

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.03  E-value=1e-09  Score=63.51  Aligned_cols=64  Identities=13%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             ccCCccEEEEEEeeec----CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          5 TAPDMRAEIICNVYAN----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~----p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      +.+|+.+.|.|.+.+.    |.|.+.|++++..+... ..     .....|.|..+..+|.|.|+|.+.|..+.
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            4579999999999764    78899999987543211 11     12347999999999999999999997543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.03  E-value=1.4e-09  Score=62.69  Aligned_cols=65  Identities=14%  Similarity=0.114  Sum_probs=46.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+...........+ ....|.|.++.  |.|.|+|.+.+.
T Consensus       118 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            4678999999999875 57899999998765432111111111 14579999998  999999998864

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.02  E-value=1.3e-09  Score=64.66  Aligned_cols=68  Identities=16%  Similarity=0.412  Sum_probs=51.1

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEEec-----------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+..+  .....|.|.+++..
T Consensus       141 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  220 (250)
T 3esu_F          141 ELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSV  220 (250)
T ss_dssp             EEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcc
Confidence            4577899999999998766  779999986  32211                 1245555432  34568999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |.|.|.|.+.+
T Consensus       221 DsG~Y~C~~~~  231 (250)
T 3esu_F          221 DSAVYFCARSG  231 (250)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cCEEEEEEEec
Confidence            99999999986

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.02  E-value=3e-09  Score=63.36  Aligned_cols=69  Identities=16%  Similarity=0.397  Sum_probs=51.4

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEEe------c-----------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTAI------T-----------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.+.+  .+.+.|+++  +..+      .           ...++.+..+  .....|.|.+++..
T Consensus       144 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  223 (256)
T 3ux9_B          144 GLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAE  223 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChh
Confidence            3467899999999998766  679999985  3211      0           1135555443  33567999999999


Q ss_pred             CCEEEEEEEecC
Q psy12132         60 DFGNYMCQASNN   71 (126)
Q Consensus        60 d~g~y~C~~~~~   71 (126)
                      |.|.|.|.+.+.
T Consensus       224 DsG~Y~C~~~~~  235 (256)
T 3ux9_B          224 DTAVYYCARYID  235 (256)
T ss_dssp             GCEEEEEEEEET
T ss_pred             hCEEEEEEEEcC
Confidence            999999999885

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=99.02  E-value=1.2e-09  Score=57.43  Aligned_cols=70  Identities=19%  Similarity=0.410  Sum_probs=52.7

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECC-----EEec----c-----------CCcEEEEecCCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDG-----TAIT----L-----------GGRIDMHVSSEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~-----~~~~----~-----------~~~~~~~~~~~~~~l~i~~~~~~d   60 (126)
                      .+.+.+|++++|.|.+. +.+.+.+.|++..     ..+.    .           ..++..........|.|.+++..|
T Consensus         8 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~D   87 (111)
T 2qhl_A            8 VKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGTREDD   87 (111)
T ss_dssp             EEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSCCGGG
T ss_pred             eEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCCChhH
Confidence            35788999999999987 6666789998832     1111    0           346665555556789999999999


Q ss_pred             CEEEEEEEecC
Q psy12132         61 FGNYMCQASNN   71 (126)
Q Consensus        61 ~g~y~C~~~~~   71 (126)
                      +|.|.|.+.+.
T Consensus        88 sG~Y~C~~~~~   98 (111)
T 2qhl_A           88 GGEYFCGEVEG   98 (111)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEccC
Confidence            99999998764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.02  E-value=5.5e-10  Score=64.68  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=49.8

Q ss_pred             CCccEEEEEEeee-cCCC-eeEEEECCEEeccCCcEE--EEecC-----CeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          7 PDMRAEIICNVYA-NPPA-KVEWFRDGTAITLGGRID--MHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         7 ~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~~~~~--~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+.......  .....     ....|.|.++...|.|.|+|.+.|.....
T Consensus       126 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          126 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            5789999999987 5555 899999998775431110  00011     12389999999999999999999976543

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.01  E-value=2.9e-08  Score=56.66  Aligned_cols=113  Identities=12%  Similarity=0.036  Sum_probs=70.5

Q ss_pred             ceeccCCccEEEEEEeeecCCCe-eEEEEC-CEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAK-VEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~-~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +..+.+|+++.|.|.+. -+.|. +.|.-. +......      .......|.+.++.. | |.|.|.+..........+
T Consensus         8 ~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~------~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~   78 (185)
T 1iam_A            8 KVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLL------PGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKT   78 (185)
T ss_dssp             EEEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEECS------SSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEEC
T ss_pred             CcEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccEec------cCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEE
Confidence            35688999999999996 45554 667421 1111100      011224688888873 4 899999876544566677


Q ss_pred             EEEecCCCCeeccCc---ceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         80 QLSGIPNIPVFQKSS---RRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        80 ~l~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .+.+...|......+   ....++.+.|+|.+.+..|...+.+.|.+
T Consensus        79 ~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~k  125 (185)
T 1iam_A           79 FLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR  125 (185)
T ss_dssp             EEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE
T ss_pred             EEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEe
Confidence            777643333222222   24678899999999888776555455544

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.01  E-value=3.1e-08  Score=59.13  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECC-----EEec--------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDG-----TAIT--------------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~-----~~~~--------------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+.+..  ...+.|++..     ..+.              ...++.+..+.  ....|.|.+++..
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE  112 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence            5678899999999997532  4579998731     1110              12455554332  4567999999999


Q ss_pred             CCEEEEEEEecCCc-----------eeEEEEEEEec---CCCCeec-cCc--ceeCCCeeEEEEEEccCCc
Q psy12132         60 DFGNYMCQASNNLG-----------SSQQFIQLSGI---PNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        60 d~g~y~C~~~~~~~-----------~~~~~~~l~~~---~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.|.|.|.+.+..+           .......+.+.   ..+|.+. ..+  ....++.+.|+|.+.+..|
T Consensus       113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p  183 (256)
T 3sob_H          113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  183 (256)
T ss_dssp             GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBS
T ss_pred             cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEEC
Confidence            99999999986421           11122234432   1223222 111  1235788999999976433

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.01  E-value=8.8e-09  Score=60.68  Aligned_cols=110  Identities=14%  Similarity=0.257  Sum_probs=67.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e-------ccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I-------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~-------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|...+. ...+.|++.  +..   +       ....|+....  ......|.|.+++..|+|.|.|.+
T Consensus        11 v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~   89 (229)
T 3mbe_C           11 LSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAA   89 (229)
T ss_dssp             EEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEE
T ss_pred             EEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccCCCCEEEEE
Confidence            567889999999999766 668999984  211   1       0124555542  334678999999999999999998


Q ss_pred             ecCC--c--e--eEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCCcce
Q psy12132         69 SNNL--G--S--SQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSAII  115 (126)
Q Consensus        69 ~~~~--~--~--~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  115 (126)
                      ....  .  .  ....+.+...  ++.|.... +.. ....+.|.|...+..|.+
T Consensus        90 ~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~-~~~-~~~~vtl~Cl~~gf~P~i  142 (229)
T 3mbe_C           90 EDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQ-LKD-PRSQDSTLCLFTDFDSQI  142 (229)
T ss_dssp             ECSSSTTCEEECCCCEEEEECCCSSCCCEEEE-EEC-TTCTTCEEEEEESCCSSS
T ss_pred             EeCCCcccceeCCCEEEEEecccCCCCCEEEE-ccC-CCCCEEEEEEccccCCce
Confidence            7521  1  0  1123333321  22222211 111 223478999998876633

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=99.01  E-value=5.1e-09  Score=55.06  Aligned_cols=69  Identities=9%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec-c-----------C-CcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT-L-----------G-GRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~-~-----------~-~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|++++|.|...+.+.+.+.|++..  .   .+. .           . .++........ .|.|.+++..|+|.
T Consensus        10 ~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~~~Dsg~   88 (112)
T 1fo0_B           10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVANMSQGRT   88 (112)
T ss_dssp             EEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEESCCSCEE
T ss_pred             eEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCCHhHCEE
Confidence            357889999999999876667789999842  1   121 0           0 34443333233 89999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+.+.
T Consensus        89 Y~C~~~~~   96 (112)
T 1fo0_B           89 LYCTCSAD   96 (112)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEcC
Confidence            99998764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.00  E-value=7.8e-10  Score=64.01  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             CCccEEEEEEeee-cCCC-eeEEEECCEEeccC-Cc-EEEEe--cC---CeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          7 PDMRAEIICNVYA-NPPA-KVEWFRDGTAITLG-GR-IDMHV--SS---EKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         7 ~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~-~~-~~~~~--~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+... .. .....  ++   ..+.|.|..+...|.|.|+|.+.|....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          125 ATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            5889999999987 4444 89999999876543 10 00111  11   1237899999999999999999987543

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.00  E-value=3.5e-09  Score=56.35  Aligned_cols=69  Identities=14%  Similarity=0.314  Sum_probs=51.8

Q ss_pred             eeccCCccEEEEEEeeecC---CCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP---PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+.+|+++.|.|...+.+   ...+.|++..  .   .+.         ...++..........|.|.+++..|.|.|.
T Consensus        10 ~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~   89 (120)
T 1oaq_L           10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF   89 (120)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeEEE
Confidence            5678999999999997654   4679998842  1   111         134666554455678999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        90 C~~~~~   95 (120)
T 1oaq_L           90 CALWYS   95 (120)
T ss_dssp             EEEEET
T ss_pred             EEEccC
Confidence            998865

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.00  E-value=8.6e-10  Score=64.37  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=51.2

Q ss_pred             ccCCccEEEEEEeeec-CCC-eeEEEECCEEeccCCcEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          5 TAPDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +..|+.+.|.|.+.+. |.| .+.|++++..+...........+   ....|.|..+...| |.|+|.+.|..+......
T Consensus       139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            3468999999999985 888 99999988654321100111111   12368899998889 999999999877654433

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.00  E-value=1.3e-09  Score=66.34  Aligned_cols=70  Identities=13%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             eeccCCccEEEEEEeeecCCC------eeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYANPPA------KVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~------~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      +.+.+|+++.|.|.+.+.+.+      .+.|+++.  .   .+.         ...++..........|.|.+++..|.|
T Consensus       169 ~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  248 (291)
T 2gki_A          169 LAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLA  248 (291)
T ss_dssp             EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCE
Confidence            457789999999999887765      89999852  2   111         134555544445568999999999999


Q ss_pred             EEEEEEecCC
Q psy12132         63 NYMCQASNNL   72 (126)
Q Consensus        63 ~y~C~~~~~~   72 (126)
                      .|.|.+.+..
T Consensus       249 ~Y~C~a~~~~  258 (291)
T 2gki_A          249 VYYCKQSYYH  258 (291)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEccCC
Confidence            9999998753

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.00  E-value=7.7e-09  Score=52.89  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=55.2

Q ss_pred             eccCCccEEEEEEeee-cCCCeeEEEE-CC---EEeccCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          4 ITAPDMRAEIICNVYA-NPPAKVEWFR-DG---TAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~-~p~~~~~w~~-~~---~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      .+..|+.+.|.|.+.+ .+.|+++|-| ++   ..+... .......+  ....|.+..+...|.|.|+|.+....|...
T Consensus        22 sv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~-~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ie  100 (120)
T 2aw2_A           22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDR-QTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE  100 (120)
T ss_dssp             EEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSS-CEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEecCCeEEEEccEEeccCCCceEEEecCCceEEECccc-cccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcEE
Confidence            4678999999999987 5899999988 43   333321 11222322  235788999999999999999998876553


Q ss_pred             -EEEEEEe
Q psy12132         77 -QFIQLSG   83 (126)
Q Consensus        77 -~~~~l~~   83 (126)
                       +.+.+.|
T Consensus       101 SHsvtI~V  108 (120)
T 2aw2_A          101 SHSTTLYV  108 (120)
T ss_dssp             CCCEEEEE
T ss_pred             eeEEEEEE
Confidence             3333433

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.99  E-value=1.8e-09  Score=58.01  Aligned_cols=70  Identities=21%  Similarity=0.360  Sum_probs=49.3

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCE----EeccC-----CcEEEE-----ecCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGT----AITLG-----GRIDMH-----VSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~----~~~~~-----~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|++++|.|.+.+. +.+.+.|+++..    .+...     .++...     .......|.|.+++..|+|.|.|
T Consensus        12 ~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   91 (127)
T 2jju_A           12 SVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYC   91 (127)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEEEEE
T ss_pred             eEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEE
Confidence            3678889999999999765 567899999651    12111     133321     11224589999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+.+.
T Consensus        92 ~~~~~   96 (127)
T 2jju_A           92 VKFRK   96 (127)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            98874

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=98.99  E-value=1.1e-08  Score=59.22  Aligned_cols=109  Identities=13%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|...+.....+.|++.  +   +.+.         ...|+....  ......|.|.+++..|+|.|.
T Consensus         9 ~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~   88 (200)
T 3rgv_A            9 QVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYY   88 (200)
T ss_dssp             EEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCccCCCEE
Confidence            35678899999999998655568999983  2   1121         124555542  234568999999999999999


Q ss_pred             EEEecC----CceeEEEEEEEec--CCCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         66 CQASNN----LGSSQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        66 C~~~~~----~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.+...    .|.. ..+.+...  +..|.... +.. ....+.|.|...+..|
T Consensus        89 Ca~~~~~~~~fG~G-T~L~V~~~~~~~~P~V~~-~~~-~~~~~tl~Cl~~gf~P  139 (200)
T 3rgv_A           89 CAANSGTYQRFGTG-TKLQVVPNIQNPDPAVYQ-LRD-SKSSDKSVCLFTDFDS  139 (200)
T ss_dssp             EEEESSSCCCCCCC-EEEEEECCCSSCCCEEEE-EEE-SSSSSCEEEEEESCCT
T ss_pred             EEeccCcccccCcC-EEEEEeCCCCCCCCeEEE-ccC-CCCCceEEEEcccccC
Confidence            998642    2222 23333321  22222211 111 1234689999977766

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.99  E-value=1.6e-09  Score=62.71  Aligned_cols=70  Identities=23%  Similarity=0.386  Sum_probs=49.5

Q ss_pred             CCccEEEEEEeeecCCC--eeEEEECCEEeccCCcE---EEEecC---CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          7 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI---DMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~---~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      .|+.+.|.|.+.+.+++  .+.|++++..+......   ....++   ....|.|......|.|.|+|.+.+......
T Consensus       129 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          129 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             cCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            58899999999875443  89999999887543111   111111   123688989888999999999999765433

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.99  E-value=1.4e-09  Score=58.45  Aligned_cols=74  Identities=12%  Similarity=0.228  Sum_probs=52.3

Q ss_pred             ceeccCCccEEEEEEeeec---CCCeeEEEECC-----EEe-c--c----------CCcEEEEe--cCCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN---PPAKVEWFRDG-----TAI-T--L----------GGRIDMHV--SSEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~---p~~~~~w~~~~-----~~~-~--~----------~~~~~~~~--~~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|.|...+.   ....+.|++..     ..+ .  .          ..++.+..  ......|.|.+++.
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   88 (126)
T 2h32_A            9 AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQP   88 (126)
T ss_dssp             EEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCCh
Confidence            3567889999999998754   24579998742     111 1  0          23565552  33457899999999


Q ss_pred             CCCEEEEEEEecCCcee
Q psy12132         59 TDFGNYMCQASNNLGSS   75 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~   75 (126)
                      .|+|.|.|.+.+..+..
T Consensus        89 ~DsG~Y~C~~~~~~~~~  105 (126)
T 2h32_A           89 EDEAMYYCAMGARSSEK  105 (126)
T ss_dssp             GGCEEEEEEEECSCCCC
T ss_pred             hHCEEEEEEEEcCCCCc
Confidence            99999999988765433

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.98  E-value=1.9e-09  Score=62.65  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=49.2

Q ss_pred             CCccEEEEEEeee-cCCC-eeEEEECCEEeccCCcEE--EEe--cCC---eEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          7 PDMRAEIICNVYA-NPPA-KVEWFRDGTAITLGGRID--MHV--SSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         7 ~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~~~~~--~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+.......  ...  ++.   .+.|.|..+...|.|.|+|.+.|......
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            4789999999987 4554 899999998765430110  111  111   13688999999999999999999764433

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.98  E-value=5.4e-09  Score=55.79  Aligned_cols=69  Identities=25%  Similarity=0.404  Sum_probs=50.3

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC--E----EeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG--T----AITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~----~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      .+.+.+|++++|.|.+.+..  .+.+.|++..  .    .+....++....  ......|.|.+++..|+|.|.|.+..
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (121)
T 2i24_N            9 RITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPES   87 (121)
T ss_dssp             EEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence            35778999999999997543  4579999843  1    222345665432  23467899999999999999998764

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.98  E-value=1.1e-09  Score=58.18  Aligned_cols=70  Identities=17%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCE----EeccC-----CcEEEE-----ecCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGT----AITLG-----GRIDMH-----VSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~----~~~~~-----~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|++++|.|.+.+. +.+.+.|++++.    .+...     .++...     .......|.|.+++..|.|.|.|
T Consensus        16 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   95 (120)
T 2yz1_A           16 SVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYC   95 (120)
T ss_dssp             EEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEE
T ss_pred             eEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEEEE
Confidence            3578899999999999765 567899999741    12110     112111     11223579999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+.+.
T Consensus        96 ~~~~~  100 (120)
T 2yz1_A           96 VKFQK  100 (120)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            98764

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.97  E-value=3.8e-10  Score=75.45  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=57.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC-----ceeEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-----GSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-----~~~~~   77 (126)
                      +.+..|+++.|.|.+.+ |.+++.|++++..+..........  ....|.|.+++..|.|.|.|.+.+..     +...+
T Consensus       543 v~v~~g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~~~~~~~~--~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~  619 (663)
T 1olz_A          543 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM--GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA  619 (663)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT--TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred             EEEecCCcEEEEccCCC-CCCcEEEEECCeeccccCcceEEe--cCCeEEEEecCcccCeEEEEEEEECccCCCceEEEE
Confidence            56778999999999998 999999999987654322111111  12369999999999999999998873     22345


Q ss_pred             EEEEEecCCCCeeccC----cceeCCCeeEEEEEE
Q psy12132         78 FIQLSGIPNIPVFQKS----SRRLGPDGYRLVWQV  108 (126)
Q Consensus        78 ~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~~~  108 (126)
                      .+.|.|.. +|.+...    .....++.+.++|..
T Consensus       620 ~~~l~V~v-~P~~~~~p~~~~~~~~g~~~~~~~~~  653 (663)
T 1olz_A          620 KHVLEVKV-VPKPVVAPTLSVVQTEGSRIATKVLV  653 (663)
T ss_dssp             EEEEEEEC---------------------------
T ss_pred             EEEEEEEe-CCccCCCCCChhhhhcCCceEEEeec
Confidence            55555543 3333221    222457778888866

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.52  E-value=5.7e-11  Score=67.94  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=68.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++..  .   .+.         ...++....  ......|.|.+++..|.|.|.
T Consensus         9 ~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~   88 (185)
T 3c6l_A            9 SLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYF   88 (185)
Confidence            356788999999999976666689999853  1   111         123444332  123458999999999999999


Q ss_pred             EEEecC---CceeEEEEEEEe--cCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEE
Q psy12132         66 CQASNN---LGSSQQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFR  122 (126)
Q Consensus        66 C~~~~~---~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r  122 (126)
                      |.+.+.   .|.. ..+.+..  .+..|......  .....+.|.|...+..|..  .|.|.
T Consensus        89 C~~~~~~~~fg~g-T~L~V~~~~~~~~P~V~~~~--~~~~~vtL~C~~~gf~P~p--~v~~~  145 (185)
T 3c6l_A           89 CAASDNRIFFGDG-TQLVVKPNIQNPEPAVYQLK--DPRSQDSTLCLFTDFDSQI--NVPKT  145 (185)
Confidence            998652   1211 2222222  11222222111  1222789999998876533  45553

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.97  E-value=3.9e-10  Score=60.22  Aligned_cols=82  Identities=15%  Similarity=0.286  Sum_probs=54.4

Q ss_pred             ceeccCCccEEEEEEe-eecCCCeeEEEECCE-Eecc-------------CCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNV-YANPPAKVEWFRDGT-AITL-------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~-~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      ++.+.+|++++|.|.. .......+.|+++.. .+..             ..+..+.  ..+.+|.|.+++..|+|.|.|
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~--~~~~sL~I~nv~~~DsG~Y~c   90 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD--PQSGALYISKVQKEDNSTYIM   90 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEEC--TTTCCEEESSCCGGGCSEEEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEe--CCCceEEEeCCCHHHCeEEEE
Confidence            4677899999999987 333345799998642 2210             1233222  123489999999999999999


Q ss_pred             EEecCCc-eeEEEEEEEecC
Q psy12132         67 QASNNLG-SSQQFIQLSGIP   85 (126)
Q Consensus        67 ~~~~~~~-~~~~~~~l~~~~   85 (126)
                      .+.+..+ .....+.|.|..
T Consensus        91 ~v~~~~~~~~~~~~~L~V~~  110 (121)
T 2edo_A           91 RVLKKTGNEQEWKIKLQVLD  110 (121)
T ss_dssp             EEEETTTEEEECCEECEEEC
T ss_pred             EEEcCCCcEEEEEEEEEEEC
Confidence            9986543 345556666543

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.97  E-value=4.3e-09  Score=62.49  Aligned_cols=118  Identities=18%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             ccCCccEEEEEEeeecC----CCeeEEEECCEEeccCCcE--EEEecCC---eEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          5 TAPDMRAEIICNVYANP----PAKVEWFRDGTAITLGGRI--DMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p----~~~~~w~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      +..|+.+.|.|.+.+..    ...+.|+++|..+......  ....++.   ...|.|......|.|.|+|.+.+..+..
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence            34589999999999864    3379999999876432100  0111111   1356666666667889999999876533


Q ss_pred             EEEEEEE--e-cCCCCeec-cCc--ceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         76 QQFIQLS--G-IPNIPVFQ-KSS--RRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        76 ~~~~~l~--~-~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      .....+.  . ...+|... ...  ....+..+.|.|.+.+..|.. ..+.|.+
T Consensus       116 ~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~-i~v~W~k  168 (240)
T 4acp_A          116 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSD-IAVEWES  168 (240)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSC-CEEEEEE
T ss_pred             cccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCC-cEEEEEE
Confidence            2222222  1 12233222 211  122367899999997754422 2344444

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.97  E-value=3.1e-09  Score=56.21  Aligned_cols=69  Identities=10%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECC--E---Eec----------cCCcEEEE--ecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDG--T---AIT----------LGGRIDMH--VSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~--~---~~~----------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|...+. +.+.+.|++..  .   .+.          ...++...  .......|.|.+++..|+|.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~   88 (116)
T 1fo0_A            9 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAV   88 (116)
T ss_dssp             EEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             cEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEE
Confidence            3678899999999999765 55689998842  1   110          12455553  23345789999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|.+.+
T Consensus        89 Y~C~~~~   95 (116)
T 1fo0_A           89 YFCAMRG   95 (116)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999876

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.97  E-value=5.6e-08  Score=52.01  Aligned_cols=84  Identities=12%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             eeccCCccEEEEEEeeecCC-CeeEEEECCE-----E-ecc--------CCcEEEEec--CCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPP-AKVEWFRDGT-----A-ITL--------GGRIDMHVS--SEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~-----~-~~~--------~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+.+|+++.|.|....... ..+.|++...     . +..        ..++.+..+  .....|.|.+++..|.|.|.
T Consensus        12 v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~   91 (124)
T 2nms_A           12 VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYW   91 (124)
T ss_dssp             EEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEE
Confidence            56788999999999865432 3689998531     1 111        135554432  34578999999999999999


Q ss_pred             EEEecCCceeEEEEEEEecCC
Q psy12132         66 CQASNNLGSSQQFIQLSGIPN   86 (126)
Q Consensus        66 C~~~~~~~~~~~~~~l~~~~~   86 (126)
                      |.+..........+.|.|.+.
T Consensus        92 C~~~~~~~~~~~~v~L~V~~~  112 (124)
T 2nms_A           92 CGIEKTGNDLGVTVQVTIDPA  112 (124)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCCCCccEEEEEEEeCC
Confidence            998876444455666666543

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.97  E-value=1.2e-08  Score=60.14  Aligned_cols=69  Identities=16%  Similarity=0.414  Sum_probs=50.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|.+.+.....+.|++..  .   .+.         ...++....  ......|.|.+++..|.|.|.
T Consensus        10 ~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~   89 (229)
T 2q86_A           10 SLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYF   89 (229)
T ss_dssp             EEEEETTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEE
Confidence            356788999999999976666689998742  1   111         124555442  234568999999999999999


Q ss_pred             EEEec
Q psy12132         66 CQASN   70 (126)
Q Consensus        66 C~~~~   70 (126)
                      |.+.+
T Consensus        90 C~~~~   94 (229)
T 2q86_A           90 CVVGD   94 (229)
T ss_dssp             EEESC
T ss_pred             EEEEe
Confidence            99875

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.96  E-value=6.2e-09  Score=54.91  Aligned_cols=69  Identities=17%  Similarity=0.298  Sum_probs=51.0

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECCE--------Eec--------------cCCcEEEEe--cCCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDGT--------AIT--------------LGGRIDMHV--SSEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~--------~~~--------------~~~~~~~~~--~~~~~~l~i~~~   56 (126)
                      .+.+.+|++++|.|...+. +...+.|++...        .+.              ...++.+..  ......|.|.++
T Consensus         7 ~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (115)
T 2atp_B            7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNV   86 (115)
T ss_dssp             EEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSC
T ss_pred             CEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEECCC
Confidence            3678899999999999754 456899987431        110              124666554  344568999999


Q ss_pred             CCCCCEEEEEEEec
Q psy12132         57 KDTDFGNYMCQASN   70 (126)
Q Consensus        57 ~~~d~g~y~C~~~~   70 (126)
                      +..|+|.|.|.+..
T Consensus        87 ~~~DsG~Y~C~~~~  100 (115)
T 2atp_B           87 KPEDSDFYFCATVG  100 (115)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHHHCEEEEEeEcc
Confidence            99999999998875

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.96  E-value=3e-09  Score=61.75  Aligned_cols=72  Identities=18%  Similarity=0.366  Sum_probs=47.5

Q ss_pred             CCccEEEEEEeee-cCCC-eeEEEECCEEeccCCcE-E-EEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          7 PDMRAEIICNVYA-NPPA-KVEWFRDGTAITLGGRI-D-MHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         7 ~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~~~~-~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+...... . ...++.   ...|.+......|.|.|+|.+.|..+.....
T Consensus       135 ~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          135 KENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            4678999999987 5666 89999999887542111 0 011111   1247788888888999999999987655544

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.95  E-value=5.7e-09  Score=61.47  Aligned_cols=68  Identities=13%  Similarity=0.376  Sum_probs=50.0

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEEe------c-----------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTAI------T-----------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.+.+.|  .+.+.|+++  +..+      .           ...++....+  .....|.|.+++..
T Consensus       129 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  208 (240)
T 1moe_A          129 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE  208 (240)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHH
Confidence            4567899999999999877  358999985  2111      0           1235554432  33468999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |.|.|.|.+..
T Consensus       209 D~G~Y~C~a~~  219 (240)
T 1moe_A          209 DTAVYYCAPFG  219 (240)
T ss_dssp             GCEEEEEEECS
T ss_pred             HCEEEEEEEEe
Confidence            99999999985

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=98.95  E-value=1.6e-08  Score=65.76  Aligned_cols=113  Identities=9%  Similarity=-0.002  Sum_probs=71.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +..+..|+++.|.|.+.   .+.+.|++++..+... +    .++....|.|.++...|.|.|.|.+.+........+.+
T Consensus       212 ~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~-r----i~~~~~~L~I~nl~~sd~g~y~~~C~~~~~i~~~~l~v  283 (488)
T 2q7n_A          212 DKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI-H----LYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFA  283 (488)
T ss_dssp             TCEEESSCCCEEEECCS---SCEEEEEETTEECCCE-E----CSSSCEEEECCSCCCCCSSCEEEEEEESSCEEEEEEEE
T ss_pred             CCEEcCCCCEEEEEECC---CCEEEEEECCEECchh-h----ccceEEEEEEeCCCcccCCcEEEEEEcCCeEEEEEEEe
Confidence            34578899999999987   4699999999776532 1    23345689999999988887777665322222233333


Q ss_pred             EecCCCCeeccCcceeCCCeeEEEEEEccC-----CcceeEEEEEEE
Q psy12132         82 SGIPNIPVFQKSSRRLGPDGYRLVWQVDTY-----SAIIQYLLKFRE  123 (126)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~r~  123 (126)
                      ...+.+|.... -.......+.++|.+...     .+...|.+.|+.
T Consensus       284 ~~pP~~P~nl~-C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~  329 (488)
T 2q7n_A          284 GYPPDVPQKLS-CETHDLKEIICSWNPGRITGLVGPRNTEYTLFESI  329 (488)
T ss_dssp             ECCCCCCCSCE-EEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETT
T ss_pred             eCCCCCCcccE-EEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEE
Confidence            33333333221 111245678899988332     256789998864

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.94  E-value=7.4e-09  Score=56.29  Aligned_cols=69  Identities=16%  Similarity=0.332  Sum_probs=51.4

Q ss_pred             eeccCCccEEEEEEeeecC---CCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP---PAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+.+|++++|.|.+...+   .+.+.|++..     ..+.         ...++..........|.|.+++..|.|.|.
T Consensus        15 v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~~~DsG~Y~   94 (135)
T 1p4b_L           15 LTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYF   94 (135)
T ss_dssp             EEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCChhHCEEEE
Confidence            5678999999999997554   4679998742     1111         124666554445678999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        95 C~~~~~  100 (135)
T 1p4b_L           95 CALWYS  100 (135)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            998764

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.94  E-value=3e-09  Score=63.78  Aligned_cols=78  Identities=14%  Similarity=0.088  Sum_probs=52.1

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEec-CCeEEEEEecCCCCCCEEEEEEEecCCc-----eeEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLG-----SSQQ   77 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~-----~~~~   77 (126)
                      .+.+|++++|.|.+.+. .+.+.|+|++..+........... .....|.|.++.  |.|.|+|.+.+...     ..+.
T Consensus       117 ~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~  193 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSD  193 (257)
T ss_dssp             TCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCC
T ss_pred             ccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCC
Confidence            35789999999999765 478999999876543221111111 124589999998  99999999986421     2234


Q ss_pred             EEEEEec
Q psy12132         78 FIQLSGI   84 (126)
Q Consensus        78 ~~~l~~~   84 (126)
                      .+.|.|.
T Consensus       194 pl~L~V~  200 (257)
T 1b6u_A          194 PLLVSVT  200 (257)
T ss_dssp             CEEECCB
T ss_pred             CEEEEEe
Confidence            4555554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.94  E-value=4.4e-09  Score=62.29  Aligned_cols=78  Identities=10%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             cCCccEEEEEEeee-cCCC-eeEEEECCEEeccC------C---cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecC
Q psy12132          6 APDMRAEIICNVYA-NPPA-KVEWFRDGTAITLG------G---RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         6 ~~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~------~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..|+.+.|.|.+.+ .|.+ .+.|++++..+...      .   ......++.   ...|.+......|.|.|+|.+.|.
T Consensus       131 ~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~  210 (248)
T 3pv7_A          131 MKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA  210 (248)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECT
T ss_pred             ccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECC
Confidence            45677889999998 7888 99999988532211      0   000011111   236788888888999999999998


Q ss_pred             CceeEE--EEEEEe
Q psy12132         72 LGSSQQ--FIQLSG   83 (126)
Q Consensus        72 ~~~~~~--~~~l~~   83 (126)
                      .+....  .+.|.+
T Consensus       211 ~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          211 SLHTPLRSNFTLTA  224 (248)
T ss_dssp             TCSSCEEEEECC--
T ss_pred             CCCCCcEEEEEEEE
Confidence            776443  444444

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.93  E-value=4.8e-08  Score=51.68  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=51.0

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEEC--CE---Eec----------cCCcEEEEe--cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFRD--GT---AIT----------LGGRIDMHV--SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~~--~~---~~~----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|++++|.|...... ...+.|++.  +.   .+.          ...++....  ......|.|.+++..|+|.
T Consensus         8 ~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (117)
T 3bp6_A            8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGI   87 (117)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHHCEE
Confidence            35688999999999997543 468999984  21   111          134666543  3456789999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+.+.
T Consensus        88 Y~C~~~~~   95 (117)
T 3bp6_A           88 YLCGAISL   95 (117)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            99998764

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.93  E-value=1.4e-08  Score=54.37  Aligned_cols=70  Identities=19%  Similarity=0.421  Sum_probs=52.0

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--C---EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|...+.+  ...+.|++.  +   ..+.         ...++..........|.|.+++..|+|.|.
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~   88 (123)
T 3t0v_A            9 SVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSEDEADYY   88 (123)
T ss_dssp             CEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             eEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCHHHCEEEE
Confidence            46788999999999997653  367999983  2   1121         124666554455679999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        89 C~~~~~   94 (123)
T 3t0v_A           89 CLSWDD   94 (123)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            998764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.93  E-value=9.2e-09  Score=60.91  Aligned_cols=68  Identities=18%  Similarity=0.473  Sum_probs=50.2

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEECC--EE---e---c-----------cCCcEEEEe--cCCeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I---T-----------LGGRIDMHV--SSEKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~~---~---~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.+.+  .+.+.|++++  ..   +   .           ...++.+..  ......|.|.+++..|
T Consensus       138 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  217 (247)
T 1svz_A          138 LKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNED  217 (247)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhH
Confidence            477899999999998775  5689999852  11   1   0           124555443  2335689999999999


Q ss_pred             CEEEEEEEecC
Q psy12132         61 FGNYMCQASNN   71 (126)
Q Consensus        61 ~g~y~C~~~~~   71 (126)
                      .|.|.|.+.+.
T Consensus       218 sG~Y~C~a~n~  228 (247)
T 1svz_A          218 TATYFCVRDRH  228 (247)
T ss_dssp             CEEEEEEEEEG
T ss_pred             CEEEEEEEecc
Confidence            99999999884

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=98.92  E-value=8e-09  Score=60.04  Aligned_cols=68  Identities=25%  Similarity=0.363  Sum_probs=48.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC-----EEec--------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT--------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +.+.+|+++.|.|...+.....+.|++..     ..+.        ...|+....  ......|.|.+++..|+|.|.|.
T Consensus        12 v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca   91 (208)
T 4ei6_A           12 LSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCA   91 (208)
T ss_dssp             EEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEE
T ss_pred             EEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEE
Confidence            56788999999999976545578999742     1111        124555542  23456899999999999999998


Q ss_pred             Eec
Q psy12132         68 ASN   70 (126)
Q Consensus        68 ~~~   70 (126)
                      +..
T Consensus        92 ~~~   94 (208)
T 4ei6_A           92 ASE   94 (208)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=98.92  E-value=1.8e-08  Score=58.47  Aligned_cols=108  Identities=19%  Similarity=0.303  Sum_probs=64.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec-------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT-------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~-------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|.+.+. ...+.|++..  .   .+.       ...|+....  ......|.|.+++..|.|.|.|.+
T Consensus        13 v~v~~G~svtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Cav   91 (205)
T 3qjh_A           13 LSLHEGTGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAA   91 (205)
T ss_dssp             EEEETTCCEEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEeCCCCEEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEEeccccccCeEEEEEE
Confidence            567889999999998765 5679999842  1   111       134555542  334678999999999999999998


Q ss_pred             ecCC-ce--eEEEEEEEecC----CCCeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         69 SNNL-GS--SQQFIQLSGIP----NIPVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        69 ~~~~-~~--~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      .... +.  ...-..|.|.+    +.|.... +.. ....+.|.|...+..|
T Consensus        92 ~~~~~~~~~fG~GT~L~V~~~~~~~~p~V~~-l~~-~~~~~tl~Cl~~~f~P  141 (205)
T 3qjh_A           92 EASNTNKVVFGTGTRLQVLPNIQNPDPAVYQ-LRD-SKSSDKSVCLFTDFDS  141 (205)
T ss_dssp             EETTTCCEEEBCCEEEEEECCCSSCCCEEEE-EEB-CC--CCEEEEEESCCT
T ss_pred             EcCCCCccccCCCEEEEEeCcccCCCCEEEE-ecc-cCCCcEEEEEEEcccc
Confidence            7321 11  11112333322    2222211 111 1234789999877665

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.92  E-value=2.1e-08  Score=59.38  Aligned_cols=69  Identities=19%  Similarity=0.398  Sum_probs=50.6

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEEe---c-------------cCCcEEEEec--CCeEEEEEecCCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTAI---T-------------LGGRIDMHVS--SEKHSLLVRHIKDTD   60 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~~---~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d   60 (126)
                      ..+.+|+++.|.|.+.+.+  .+.+.|+++  +..+   .             ...++.+..+  .....|.|.+++..|
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  211 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED  211 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCc
Confidence            3467899999999998775  478999984  2211   0             1345555432  234689999999999


Q ss_pred             CEEEEEEEecC
Q psy12132         61 FGNYMCQASNN   71 (126)
Q Consensus        61 ~g~y~C~~~~~   71 (126)
                      .|.|.|.+.+.
T Consensus       212 ~G~Y~C~a~~~  222 (242)
T 2znx_A          212 TATYYCANXDG  222 (242)
T ss_dssp             CEEEEEEETTS
T ss_pred             CEEEEEeccCC
Confidence            99999999873

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.92  E-value=2.8e-08  Score=58.15  Aligned_cols=74  Identities=11%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             cCCccEEEEEEeeec-CCC-eeEEEE-CCEEeccCCcE-EEEecC---CeEEEEEecCCC--CCCEEEEEEEecCCceeE
Q psy12132          6 APDMRAEIICNVYAN-PPA-KVEWFR-DGTAITLGGRI-DMHVSS---EKHSLLVRHIKD--TDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p~~-~~~w~~-~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~   76 (126)
                      ..|+.+.|.|.+.+. |.+ .+.|++ ++..+...... .....+   ....|.|.....  .|.|.|+|.+.+..+...
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~  218 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKE  218 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCc
Confidence            478899999999877 766 999999 88765420000 000111   123678877765  788999999999887665


Q ss_pred             EEE
Q psy12132         77 QFI   79 (126)
Q Consensus        77 ~~~   79 (126)
                      ...
T Consensus       219 ~~~  221 (223)
T 1dee_B          219 KDV  221 (223)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.92  E-value=1.4e-09  Score=62.97  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             ccCCccEEEEEEeeec-CCC-eeEEEECCEEeccCCcEEEEecC---CeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          5 TAPDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~-p~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      +..|+.+.|.|.+.+. |.| .+.|++++..+...........+   ....|.|..+..+| |.|+|.+.|..+....
T Consensus       130 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          130 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             cccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            3578999999999887 878 99999987643211000011111   12368898888767 9999999998776543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.92  E-value=1.7e-09  Score=62.90  Aligned_cols=74  Identities=14%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             ccCCccEEEEEEeee-cCCC-eeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          5 TAPDMRAEIICNVYA-NPPA-KVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~-~p~~-~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +..|+.+.|.|.+.+ .|.| .+.|++++..+...........+.   ...|.|..... |.|.|+|.+.|..+......
T Consensus       136 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             SCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEE
T ss_pred             cccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEE
Confidence            457999999999998 8888 999999886532110000011111   13688855444 56999999999876554433

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.91  E-value=7.9e-09  Score=54.28  Aligned_cols=68  Identities=15%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|.+.+.+.+.+.|++..     ..+.         ...++....  ......|.|.+++..|+|.|.
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   88 (112)
T 2z35_A            9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY   88 (112)
T ss_dssp             EEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEE
T ss_pred             cEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEE
Confidence            356789999999999987667789999842     1121         124555432  223568999999999999999


Q ss_pred             EEEe
Q psy12132         66 CQAS   69 (126)
Q Consensus        66 C~~~   69 (126)
                      |.+.
T Consensus        89 C~~~   92 (112)
T 2z35_A           89 CALS   92 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9987

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.91  E-value=8e-09  Score=54.55  Aligned_cols=69  Identities=13%  Similarity=0.262  Sum_probs=49.3

Q ss_pred             eeccCCccEEEEEEeeec---CCCeeEEEECC-----EEec-------------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYAN---PPAKVEWFRDG-----TAIT-------------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~---p~~~~~w~~~~-----~~~~-------------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      +.+.+|+++.|.|.....   +...+.|++..     ..+.             ...++....+.  ....|.|.+++..
T Consensus         8 ~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   87 (116)
T 3bj9_1            8 MSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPE   87 (116)
T ss_dssp             EEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCChh
Confidence            567889999999998743   45679998742     1111             12355554332  2458999999999


Q ss_pred             CCEEEEEEEecC
Q psy12132         60 DFGNYMCQASNN   71 (126)
Q Consensus        60 d~g~y~C~~~~~   71 (126)
                      |+|.|.|.+.+.
T Consensus        88 DsG~Y~C~~~~~   99 (116)
T 3bj9_1           88 DEAMYYCAMGAR   99 (116)
T ss_dssp             GCEEEEEEECCS
T ss_pred             HCEEEEEEEeCC
Confidence            999999998764

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.90  E-value=4e-09  Score=61.00  Aligned_cols=73  Identities=14%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             CCccEEEEEEeeec--CCCeeEEEECCEEeccCC---cEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          7 PDMRAEIICNVYAN--PPAKVEWFRDGTAITLGG---RIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         7 ~g~~~~l~C~~~~~--p~~~~~w~~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      .|+.+.|.|.+.+.  |.+.+.|++++..+....   ......++.   ...|.|..+...|.|.|+|.+.+..+.....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          125 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  204 (211)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred             cCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence            58999999999875  357899999998775321   001111111   1368888888889999999999987665554


Q ss_pred             E
Q psy12132         79 I   79 (126)
Q Consensus        79 ~   79 (126)
                      +
T Consensus       205 ~  205 (211)
T 3tv3_L          205 V  205 (211)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.90  E-value=2.5e-09  Score=63.54  Aligned_cols=68  Identities=21%  Similarity=0.340  Sum_probs=48.0

Q ss_pred             CCccEEEEEEeeec-CC-CeeEEEECCEEeccC--CcEEEEec--C---CeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          7 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLG--GRIDMHVS--S---EKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~--~~~~~~~~--~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      .|+.+.|.|.+.+. |. +.+.|++++..+...  ........  +   ....|.|.++...|.|.|+|.+.|....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            47789999999874 44 469999999876543  11111111  1   1247999999999999999999997644

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.90  E-value=1.6e-08  Score=53.29  Aligned_cols=70  Identities=19%  Similarity=0.354  Sum_probs=50.7

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC--CE-----Ee-c--c----------CCcEEEEecCCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD--GT-----AI-T--L----------GGRIDMHVSSEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~~-----~~-~--~----------~~~~~~~~~~~~~~l~i~~~~~~d   60 (126)
                      .+.+.+|++++|.|...+. +...+.|++.  +.     .+ .  .          ..++..........|.|.+++..|
T Consensus         9 ~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   88 (114)
T 2hp4_A            9 DRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRREN   88 (114)
T ss_dssp             SCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEEECCCCHHH
Confidence            3567889999999999744 3567999873  22     11 0  0          245655444456789999999999


Q ss_pred             CEEEEEEEecC
Q psy12132         61 FGNYMCQASNN   71 (126)
Q Consensus        61 ~g~y~C~~~~~   71 (126)
                      +|.|.|.+.+.
T Consensus        89 sg~Y~C~~~~~   99 (114)
T 2hp4_A           89 EGYYFCSALSN   99 (114)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEecC
Confidence            99999998764

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.89  E-value=7.8e-08  Score=52.14  Aligned_cols=69  Identities=14%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEEC--CE---Eec----------cCCcEEEEe--cCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFRD--GT---AIT----------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~--~~---~~~----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|...... ...+.|++.  +.   .+.          ...++....  ......|.|.+++..|+|.|
T Consensus        19 v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y   98 (134)
T 3bik_B           19 LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY   98 (134)
T ss_dssp             EEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEE
Confidence            5678899999999987543 468999984  21   111          134666543  34467899999999999999


Q ss_pred             EEEEecC
Q psy12132         65 MCQASNN   71 (126)
Q Consensus        65 ~C~~~~~   71 (126)
                      .|.+.+.
T Consensus        99 ~C~~~~~  105 (134)
T 3bik_B           99 LCGAISL  105 (134)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9998764

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.88  E-value=2.5e-09  Score=56.89  Aligned_cols=69  Identities=23%  Similarity=0.441  Sum_probs=49.6

Q ss_pred             ceeccCCccEEEEEEeeecC----CCeeEEEECC----EEec-----cCCcEEEEe-----cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP----PAKVEWFRDG----TAIT-----LGGRIDMHV-----SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p----~~~~~w~~~~----~~~~-----~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|.+...+    ...+.|++..    ..+.     ...++....     ......|.|.+++..|+|.
T Consensus        16 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~DsG~   95 (120)
T 3noi_A           16 EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASI   95 (120)
T ss_dssp             EEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGCEE
T ss_pred             EEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhCEE
Confidence            35678899999999997654    4579999864    3222     123444322     2234689999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|.+..
T Consensus        96 Y~C~v~~  102 (120)
T 3noi_A           96 YVCRVEV  102 (120)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999874

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.88  E-value=2.6e-10  Score=66.06  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             cCCccEEEEEEeeec-CC-CeeEEEECCEEeccCCcEE-EEecC----CeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          6 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRID-MHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ..|+.+.|.|.+.+. |. +.+.|++++..+....... ....+    ....|.|.++...|.|.|+|.+.|..+.
T Consensus       126 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          126 LRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             HHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            358899999999887 44 7999999998875432110 00001    0135889999999999999999997654

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.88  E-value=1.5e-08  Score=57.74  Aligned_cols=64  Identities=13%  Similarity=0.308  Sum_probs=47.0

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.++.|.|.+.+.|.+.+.|++++..+. .      ...   .+.+.. ...|.|.|+|.+.|..+.......+.
T Consensus       115 ~~~v~L~C~~~~~p~~~~~W~~~g~~l~-~------~~~---~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          115 CINTTLTCEVMNGTDPELNLYQDGKHLK-L------SQR---VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEESSCEEE-E------ESS---CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             cCcEEEEeEccCCCCCEEEEEECCEECC-C------CCc---EEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            3368999999988899999999987761 1      011   233332 46899999999999988777666553

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.88  E-value=1.4e-08  Score=61.43  Aligned_cols=70  Identities=17%  Similarity=0.330  Sum_probs=52.3

Q ss_pred             eeccCCccEEEEEEeee-cC-CCeeEEEEC--CEEec------------cCCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYA-NP-PAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p-~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|.+.+ .+ .+.+.|++.  +..+.            ...++..........|.|.+++..|.|.|.|
T Consensus       149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  228 (280)
T 3fku_X          149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC  228 (280)
T ss_dssp             EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEE
Confidence            45778999999999987 43 478999873  22111            1245665555556789999999999999999


Q ss_pred             EEecCC
Q psy12132         67 QASNNL   72 (126)
Q Consensus        67 ~~~~~~   72 (126)
                      .+.+..
T Consensus       229 ~~~~~~  234 (280)
T 3fku_X          229 STWDSS  234 (280)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            998765

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.87  E-value=9.5e-08  Score=55.02  Aligned_cols=114  Identities=7%  Similarity=-0.069  Sum_probs=71.7

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +..+..|+++.|.|.+. -+.+ .+.|.-.-...      ..........+.+.++. .|.+.|.|.+........+.+.
T Consensus        11 ~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~------~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~   82 (196)
T 3bn3_B           11 VAFVERGGSLWLNCSTN-CPRPERGGLETSLRRN------GTQRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQARGL   82 (196)
T ss_dssp             EEEEETTEEEEEEEEEC-CSSCSEEEEECSSEEE------EEEEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEECE
T ss_pred             CcEEcCCCeEEEEEeCC-CCCCCccEEEEccCCe------eEccccCceEEEEEEEc-cCCCceEEEEECCCCceEEEEE
Confidence            35678899999999996 4555 67774321110      01111122358888888 7777799997765455566666


Q ss_pred             EEecCC--CCeeccCc-ceeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         81 LSGIPN--IPVFQKSS-RRLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        81 l~~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      |.+...  .+.+...+ ....++.+.|+|.+.+..|...+.+.|.+
T Consensus        83 l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlk  128 (196)
T 3bn3_B           83 IRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLR  128 (196)
T ss_dssp             EEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEE
T ss_pred             EEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEe
Confidence            665432  22232221 25678899999999888777766555554

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.87  E-value=4.3e-08  Score=51.77  Aligned_cols=70  Identities=19%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEECC-----EEec---c----------CCcEEEEec--CCeEEEEEecCCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRDG-----TAIT---L----------GGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~-----~~~~---~----------~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      .+.+.+|++++|.|.+.+.+  ...+.|++..     ..+.   .          ..++....+  .....|.|.+++..
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   88 (116)
T 1a2y_B            9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CEEEeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHH
Confidence            35678899999999997543  3679998742     1111   0          135555432  34578999999999


Q ss_pred             CCEEEEEEEecC
Q psy12132         60 DFGNYMCQASNN   71 (126)
Q Consensus        60 d~g~y~C~~~~~   71 (126)
                      |+|.|.|.+.+.
T Consensus        89 Dsg~Y~C~~~~~  100 (116)
T 1a2y_B           89 DTARYYCARERD  100 (116)
T ss_dssp             GCEEEEEEEESS
T ss_pred             HCEEEEEEEecC
Confidence            999999998764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.87  E-value=4.5e-08  Score=57.64  Aligned_cols=77  Identities=12%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             CC-ccEEEEEEeeec-CCC-eeEEEE-CCEEeccCCcE-EEEecC---CeEEEEEecCCC--CCCEEEEEEEecCCceeE
Q psy12132          7 PD-MRAEIICNVYAN-PPA-KVEWFR-DGTAITLGGRI-DMHVSS---EKHSLLVRHIKD--TDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         7 ~g-~~~~l~C~~~~~-p~~-~~~w~~-~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~   76 (126)
                      .| +.+.|.|.+.+. |.+ .+.|++ ++..+...... .....+   ....|.|.....  .|.|.|+|.+.+..+...
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~  218 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE  218 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcc
Confidence            57 899999999876 776 999999 88765430000 000111   123688888776  789999999999887765


Q ss_pred             EEEEEEe
Q psy12132         77 QFIQLSG   83 (126)
Q Consensus        77 ~~~~l~~   83 (126)
                      ....+.+
T Consensus       219 ~~~~i~~  225 (232)
T 1dn0_B          219 KNVPLPV  225 (232)
T ss_dssp             EEEECCC
T ss_pred             eeEecCC
Confidence            5554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-10
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	4e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	9e-06
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	9e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	2e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	5e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	7e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	9e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.001
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.001
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.003
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-13
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           E+   V    P    W +    I     + +  S     L +   +    G Y     N
Sbjct: 18 VELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 77

Query: 71 NLGSSQQFIQLS--GIPNIPVF 90
           LGS Q  + L+    P+ P  
Sbjct: 78 KLGSRQAQVNLTVVDKPDPPAG 99

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 9e-13
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNYMCQAS 69
           +  C    NP   + W ++G       RI  +    +H  L+   +  +D GNY C   
Sbjct: 23 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 82

Query: 70 NNLGSSQQFIQLS 82
          N  GS      L 
Sbjct: 83 NEYGSINHTYHLD 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (120), Expect = 4e-10
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A   C V A+ P  V W +D   +    +     +   + L +  +K  D G Y  +A 
Sbjct: 18 SANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77

Query: 70 NNLGSSQQFIQLS 82
          N+ G+ ++ + L+
Sbjct: 78 NSYGTKEEIVFLN 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-09
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A   C+    P   V W R G  ++   R  +  +  K +  +  ++ +D GNY     
Sbjct: 16 SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 75

Query: 70 NNLGSSQQFIQLS 82
          N+ G  +    L+
Sbjct: 76 NSEGKQEAEFTLT 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.2 bits (114), Expect = 4e-09
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             I C V   P   V W  +   ++ G             L+++ +K+ D G Y C+A+
Sbjct: 20 DVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD-----SGLVIKGVKNGDKGYYGCRAT 74

Query: 70 NNLGSSQQFIQLS 82
          N  G       + 
Sbjct: 75 NEHGDKYFETLVQ 87

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 5e-09
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNYMCQA 68
            ++C+    P   + W +DG  I      D        S  L +R++   D   Y+C A
Sbjct: 23 VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82

Query: 69 SNNLGSSQQFIQLS 82
           N  G     I L 
Sbjct: 83 ENKAGEQDASIHLK 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-08
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTDFGNYM 65
          I  +V   P   + W  +G+ +     I           +     L +      + GNY 
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 66 CQASNNLGSSQQFIQLS 82
            A+N  G +   I  +
Sbjct: 80 LLAANPFGQASASIMAA 96

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 11  AEIICNVYANPPAKVEWFRDGTAI-------------TLGGRIDMHVSSEKHSLLVRHIK 57
            E +C VY++    ++W +                   L          E   L +R++ 
Sbjct: 23  VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82

Query: 58  DTDFGNYMCQASNNLGSSQQFIQLS 82
             D G Y C A N++G S     L+
Sbjct: 83  FEDAGEYTCLAGNSIGISFHSAWLT 107

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNYMCQA 68
           A     V   P  + EW+++G  I    RI  +   +    LV R +   D  + M +A
Sbjct: 21 DAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA 80

Query: 69 SNNLGSSQQFIQLS 82
           N  G +     L 
Sbjct: 81 INIAGETSSHAFLL 94

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-07
 Identities = 10/76 (13%), Positives = 20/76 (26%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
                           +    F         GR+ +  + ++    V   +  D G Y  
Sbjct: 52  KAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTV 111

Query: 67  QASNNLGSSQQFIQLS 82
              N +G  Q  + + 
Sbjct: 112 TVKNPVGEDQVNLTVK 127

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.0 bits (103), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            + C  + NP  +++W +   + T          S +  L ++++   D G Y C+A N
Sbjct: 23 VTLECFAFGNPVPQIKWRKLDGSQT------SKWLSSEPLLHIQNVDFEDEGTYECEAEN 76

Query: 71 NLGSSQQFIQLS 82
            G      ++ 
Sbjct: 77 IKGRDTYQGRII 88

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 7   PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDF 61
            D    I   V  NP   ++WF +G  +     I   +    H      L + +    + 
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 62  GNYMCQASNNLGSSQQFIQLS--GIPNI 87
           G+Y   A N  G  ++ I     G P I
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-07
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 67
          R E+ C V +   A V+WF++G  I  G +    +  E  KH L++      D   Y   
Sbjct: 17 RVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 75

Query: 68 ASNNLGSSQQFIQL 81
           +    S++  + L
Sbjct: 76 TTGGQSSAKLSVDL 89

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 13 IICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
          I   V  NPP  + W  +G  +                 +  LL       + GNY   A
Sbjct: 22 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 69 SNNLGSSQQFIQL 81
           N LG++ Q I  
Sbjct: 82 KNPLGTANQTING 94

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE--------KHSLLVRHIKDTD 60
          RA + C+ +  +PP++  WF+DG ++                        L+   +   D
Sbjct: 19 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 78

Query: 61 FGNYMCQASNNLGSSQ 76
           G Y CQA N  G++ 
Sbjct: 79 SGEYYCQAQNGYGTAM 94

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-06
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 11 AEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
              C +  N     + W++D +   +       +   K  L     K  D G+Y C   
Sbjct: 20 DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 79

Query: 70 NNLGSSQQFIQLSGIPNIP 88
          N+    +  I    + N P
Sbjct: 80 NSSYCLRIKISAKFVENEP 98

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (97), Expect = 1e-06
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
          +  + C   ANPPA   W  +GT + +G      +      ++   +K  D G+Y C A+
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQCVAT 82

Query: 70 NNLGS 74
          N  G+
Sbjct: 83 NARGT 87

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A I+C+V ++ P  + W   G  +    +    +    + L +R IK TD G Y C+  
Sbjct: 18 DAVIVCDVVSSLPPTIIWKHKGRDVI-LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 76

Query: 70 NNLGSSQQFIQL 81
                  F  +
Sbjct: 77 ILARGEINFKDI 88

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-06
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 7/88 (7%)

Query: 10  RAEIICNV---YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNY 64
              I C V          +  FR    +          + ++ +        ++    N+
Sbjct: 19  SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNF 78

Query: 65  MCQASNNLGSS--QQFIQLSGIPNIPVF 90
            C A  +L S     F + S    + ++
Sbjct: 79  SCLAVLDLMSRGGNIFHKHSAPKMLEIY 106

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 40.6 bits (94), Expect = 4e-06
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNYMCQA 68
           A   C V   P  +V WF+D   +       +    E +  L    +   D   Y C+A
Sbjct: 25 AARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 84

Query: 69 SNNLGSSQQFIQLS 82
           N+LG +    +L 
Sbjct: 85 VNSLGEATCTAELL 98

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.0 bits (92), Expect = 5e-06
 Identities = 10/67 (14%), Positives = 23/67 (34%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C +  N       ++           +  +  ++ SL+    + +D G+Y C A 
Sbjct: 19 PTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 78

Query: 70 NNLGSSQ 76
             G + 
Sbjct: 79 TPAGVAS 85

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 5e-06
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 10 RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
          +  +   + A+  A+V+W ++G      G +        K +L +      D   Y C  
Sbjct: 23 KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 81

Query: 69 SNNLGSSQQFIQ 80
               S++ F++
Sbjct: 82 GGEKCSTELFVK 93

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-06
 Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 5/79 (6%)

Query: 14  ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
           +          V   R    +     +            V   +D     + C+   +L 
Sbjct: 28  VEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT---TTVLVRRDHHGAQFSCRTELDLR 84

Query: 74  S--SQQFIQLSGIPNIPVF 90
               + F   S    +  F
Sbjct: 85  PQGLELFENTSAPYQLQTF 103

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 7e-06
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 10 RAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
              IC   +  PA  + W R          +D +       L +R+++ +D G Y+C  
Sbjct: 19 DVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-----GILTIRNVQPSDAGTYVCTG 73

Query: 69 SNNLGSSQQFIQLS 82
          SN     Q    L 
Sbjct: 74 SNMFAMDQGTATLH 87

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 9e-06
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
            ++ C+V       ++W +DG  +       I +        L ++ ++ +D G Y CQ
Sbjct: 13 PVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ 72

Query: 68 ASNNLGSS 75
            +   + 
Sbjct: 73 VEDGGETE 80

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.1 bits (90), Expect = 9e-06
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 4/73 (5%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
               C     P   V W RDG  +         +      L    +   D G Y C A 
Sbjct: 18 DLRWSCVASGKPRPAVRWLRDGQPLAS----QNRIEVSGGELRFSKLVLEDSGMYQCVAE 73

Query: 70 NNLGSSQQFIQLS 82
          N  G+     +L+
Sbjct: 74 NKHGTVYASAELT 86

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDF 61
          RA + C+    +PP++  WF+DG  +    +     S+  +        L+   +  +D 
Sbjct: 19 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 78

Query: 62 GNYMCQASNNLGSSQ 76
          G Y C+A N  G+  
Sbjct: 79 GEYSCEARNGYGTPM 93

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 2e-05
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 14  ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
                  P     W  +     +       VS    +L +   + +D GNY C A++++ 
Sbjct: 26  CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 85

Query: 74  SSQ-----QFIQLSGIPN 86
                   +F QLS    
Sbjct: 86  FITKSVFSKFSQLSLAAE 103

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 23/71 (32%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
            +  +    P     W    +   L   + +   S   S+     K  D GNY  +  N
Sbjct: 20 HNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79

Query: 71 NLGSSQQFIQL 81
           LG  +   ++
Sbjct: 80 ELGEDEAIFEV 90

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 5e-05
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 9  MRAEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
              ++C          N   K++W++D   + L      H S  K  L+V ++ +   G
Sbjct: 15 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRG 71

Query: 63 NYMCQASNNLGSSQQFIQLS 82
          NY C AS      Q  I   
Sbjct: 72 NYTCHASYTYLGKQYPITRV 91

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-05
 Identities = 12/70 (17%), Positives = 15/70 (21%), Gaps = 3/70 (4%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
           A   C+      A    +  G       L             S  V +    D G Y C
Sbjct: 18 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77

Query: 67 QASNNLGSSQ 76
                G   
Sbjct: 78 MIRTEGGVGI 87

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 10 RAEIICNVYANPPAKV-------EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF- 61
           A ++C   + PP          +            R  +  S  +  L + ++      
Sbjct: 19 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 78

Query: 62 GNYMCQASNNLGSSQQFIQL 81
          G Y C  +++ GS Q  I L
Sbjct: 79 GQYRCNGTSSKGSDQAIITL 98

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.4 bits (83), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQA 68
            I C   +NP     +F++G  +       +  H  +    LL +     D G Y C+ 
Sbjct: 21 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV 80

Query: 69 SNNLGSSQ 76
           N +G  Q
Sbjct: 81 DNGVGKPQ 88

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 9/56 (16%), Positives = 15/56 (26%)

Query: 27  WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
             + G  + L    D         L +   +    G Y C+ S           L+
Sbjct: 50  SSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 10  RAEIICNVYANPPAKVEWFRDGTAITLGGRI------------DMHVSSEKHSLLVRHIK 57
           + ++ICNV         W  +G+ I     +            +   S+    L +  I+
Sbjct: 19  QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 78

Query: 58  DTDFG-NYMCQASNNLGSSQQFIQL 81
              +   + C A N  G    +IQL
Sbjct: 79  SRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 42  MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81
             +   K +L +++++ +D G Y C   ++    +  ++L
Sbjct: 74  ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 17 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
          V     A V W     A           +     LL+R ++  D GNY C  +     +
Sbjct: 31 VEPEDNATVHWVLRKPAAG---SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGT 86

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 5e-04
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 14/81 (17%)

Query: 3  SITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
          + T P+  +   +C  + NP  +++  +               +          +     
Sbjct: 13 NWTWPENSQQTPMCQAWGNPLPELKCLK-------------DGTFPLPIGESVTVTRDLE 59

Query: 62 GNYMCQASNNLGSSQQFIQLS 82
          G Y+C+A +  G   + + ++
Sbjct: 60 GTYLCRARSTQGEVTREVTVN 80

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 7e-04
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
             + C V      +  W       +        + S   +L      D +  N  C A 
Sbjct: 19 DVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA-NVTSDLNRKNVTCWAE 77

Query: 70 NNLGSSQQFIQLS 82
          N++G ++  +Q++
Sbjct: 78 NDVGRAEVSVQVN 90

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 9e-04
 Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
           E++           E            +  +++ +   SL + ++  +D   Y  ++ N
Sbjct: 24 KEVLW--KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81

Query: 71 NLGSSQ 76
             + +
Sbjct: 82 ITDTMK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
           A     + + P    +W   G  +T     ++    +KH L++ + +    G    QA+
Sbjct: 18 TAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 76

Query: 70 NNLGSSQQFIQ 80
          N   ++   ++
Sbjct: 77 NAKSAANLKVK 87

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 37  GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
               + H       + +   KD   GNY C+ +           L 
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.003
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
          AE+ C+  +N       F++G           +    + +LL+ ++ + D G Y C +  
Sbjct: 15 AELKCSQKSNLARVFWKFQNGVLKA---ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 71

Query: 71 NLGSSQQFIQLS 82
           + +   F  ++
Sbjct: 72 RVKNKTVFQVVA 83

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.004
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 10  RAEIICNVYANPPAKVEWF-------RDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDF 61
           + +I C + + PP     +         GT+                +L + +I +    
Sbjct: 23  KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 82

Query: 62  GNYMCQASNNLGSSQQFIQLS 82
             Y C A N+ GS  + I+L 
Sbjct: 83  TIYNCTAWNSFGSDTEIIRLK 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.83
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.82
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.82
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.81
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.81
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.81
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.78
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.76
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.76
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.74
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.73
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.72
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.72
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.7
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.7
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.69
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.69
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.69
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.68
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.68
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.67
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.67
d2avga1	110	Cardiac myosin binding protein C, different domain	99.66
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.66
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.66
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.65
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.65
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.65
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.64
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.64
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.62
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.62
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.6
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.6
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.58
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.58
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.57
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.57
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.56
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.54
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.53
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.51
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.49
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.46
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.43
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.41
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.4
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.39
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.31
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.27
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.23
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.03
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.97
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.89
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.78
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.77
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.76
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.76
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.73
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.72
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.72
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.72
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.7
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.7
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.69
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.68
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.67
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.66
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.66
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.66
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.65
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.65
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.63
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.63
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.62
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.62
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.62
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.61
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.61
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.6
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.6
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.59
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.58
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.58
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.56
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.56
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.54
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.54
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.53
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.53
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.52
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.52
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.52
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.52
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.5
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.49
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.49
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.48
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.48
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.48
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.47
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.47
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.46
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.46
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.45
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.41
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.38
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.38
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.38
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.37
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.37
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.36
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.36
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.36
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.33
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.33
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.33
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.32
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.32
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.31
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.31
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.29
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.28
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.27
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.25
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.24
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.24
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.24
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.22
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.21
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.21
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.2
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.2
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.19
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.18
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.17
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.15
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.15
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	98.14
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.13
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.11
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.05
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.04
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.03
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.02
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.01
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.0
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.91
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.9
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.87
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.83
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.82
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.79
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.78
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.78
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.77
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.75
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.74
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.73
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.72
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.71
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.71
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.62
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.61
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.6
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.57
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.57
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.55
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.54
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.54
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.53
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.53
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.52
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.51
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.5
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.5
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.5
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.49
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.47
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.45
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.45
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.44
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.42
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.41
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.37
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.35
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.33
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.32
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.28
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.27
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.24
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.22
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.21
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.18
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.16
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.12
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.12
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.07
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.98
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.97
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.95
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.93
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.84
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	96.82
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.81
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.81
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.75
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.46
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.43
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.29
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.29
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.27
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	96.11
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	95.95
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	95.87
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	95.8
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	95.6
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	95.56
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	95.55
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.53
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	95.49
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	95.37
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	95.29
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	95.27
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	95.23
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	95.22
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	95.2
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	95.03
d2crza1	97	Fibronectin type-III domain containing protein 3a,	94.89
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	94.78
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	94.61
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	94.49
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	94.45
d2crma1	107	Fibronectin type-III domain containing protein 3a,	94.14
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	94.13
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	93.94
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	93.6
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	93.47
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	93.38
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	93.12
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	92.91
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	92.81
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	92.75
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	92.55
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	92.25
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.14
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	92.13
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	91.92
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	91.9
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	91.89
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	91.78
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.64
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	91.63
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	91.63
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	91.6
d2d9qb1	94	Granulocyte colony-stimulating factor (GC-SF) rece	91.56
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	91.55
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.51
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	91.44
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	91.38
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.29
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.26
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	91.14
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.0
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.0
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.93
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	90.86
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.86
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	90.7
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	90.7
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	90.69
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	90.66
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.63
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	90.59
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	90.47
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.43
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	90.41
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.4
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	90.38
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.36
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	90.24
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	90.24
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.05
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	90.03
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	89.95
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	89.81
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.8
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	89.7
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	89.69
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	89.68
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	89.38
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	89.38
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	89.37
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	89.16
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	89.12
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	89.11
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	89.1
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	89.04
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	88.99
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	88.92
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.87
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	88.82
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	88.81
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	88.8
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	88.76
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	88.73
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	88.69
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	88.67
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	88.59
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	88.45
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	88.36
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	88.24
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	88.21
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	88.19
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	88.16
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	88.13
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	88.08
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	88.01
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	87.94
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	87.77
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	87.7
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	87.55
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	87.45
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	87.45
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	87.43
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	87.42
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	87.29
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	87.03
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	86.96
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	86.9
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	86.81
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	86.71
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	86.63
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	86.6
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	86.35
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	85.63
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	85.6
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	85.49
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	85.49
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	85.02
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	84.65
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	84.6
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	83.88
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	83.76
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	83.73
d1cida2	72	CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10	83.42
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	83.03
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	83.0
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	81.9
d1wioa4	72	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	81.64
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	81.6
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	81.46
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	80.71
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	80.25

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-19  Score=92.94  Aligned_cols=84  Identities=18%  Similarity=0.281  Sum_probs=74.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   88 (101)
T d2cqva1           9 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   88 (101)
T ss_dssp             SEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             cEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46778999999999999999999999999998888888877776667789999999999999999999999999888888


Q ss_pred             EecC
Q psy12132         82 SGIP   85 (126)
Q Consensus        82 ~~~~   85 (126)
                      .+..
T Consensus        89 ~V~~   92 (101)
T d2cqva1          89 TVVD   92 (101)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7653

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=2.3e-20  Score=95.42  Aligned_cols=84  Identities=20%  Similarity=0.384  Sum_probs=74.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   89 (97)
T d1koaa1          10 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL   89 (97)
T ss_dssp             CCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECC
T ss_pred             CEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEE
Confidence            46678899999999999999999999999999887777776666677789999999999999999999999998888877


Q ss_pred             EecC
Q psy12132         82 SGIP   85 (126)
Q Consensus        82 ~~~~   85 (126)
                      .|..
T Consensus        90 ~V~~   93 (97)
T d1koaa1          90 NVTR   93 (97)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            7654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.82  E-value=6.3e-20  Score=93.05  Aligned_cols=82  Identities=16%  Similarity=0.289  Sum_probs=73.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+....++..........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus        11 ~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l   90 (93)
T d1wiua_          11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV   90 (93)
T ss_dssp             EEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEE
Confidence            46788999999999999999999999999988887777777777777899999999999999999999999999988888


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        91 ~V   92 (93)
T d1wiua_          91 IV   92 (93)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.82  E-value=6.4e-19  Score=90.72  Aligned_cols=83  Identities=22%  Similarity=0.360  Sum_probs=72.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+..+.++.+.... ....|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus        17 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   96 (102)
T d1fhga_          17 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAE   96 (102)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEE
Confidence            467788999999999999999999999999999888777765443 4678999999999999999999999999988888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus        97 L~V~  100 (102)
T d1fhga_          97 LLVE  100 (102)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.81  E-value=5.7e-20  Score=92.86  Aligned_cols=83  Identities=19%  Similarity=0.353  Sum_probs=73.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus         8 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   87 (91)
T d1tnna_           8 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL   87 (91)
T ss_dssp             CEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEE
T ss_pred             CEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEE
Confidence            57789999999999999999999999999988877777777766677899999999999999999999999998888887


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus        88 ~V~   90 (91)
T d1tnna_          88 TIQ   90 (91)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            763

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=3.1e-19  Score=89.69  Aligned_cols=79  Identities=23%  Similarity=0.374  Sum_probs=69.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+....++.+. .+   .|.|.++...|.|.|+|.+.|..|...+...|
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~-~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   85 (89)
T d1cs6a4          10 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-GG---ELRFSKLVLEDSGMYQCVAENKHGTVYASAEL   85 (89)
T ss_dssp             CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-TT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee-ee---eEEEEeecccCCEEEEEEEEeCCCEEEEEEEE
Confidence            567888999999999999999999999999998877776553 22   79999999999999999999999988888877


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus        86 ~V~   88 (89)
T d1cs6a4          86 TVQ   88 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.81  E-value=1.5e-18  Score=88.69  Aligned_cols=83  Identities=20%  Similarity=0.305  Sum_probs=71.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+....+.... .......|.|.++...|.|.|+|.+.|..|...+...
T Consensus        13 ~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   92 (98)
T d1g1ca_          13 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF   92 (98)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEE
Confidence            467788999999999999999999999999998876665443 3445678999999999999999999999999988888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus        93 L~V~   96 (98)
T d1g1ca_          93 LLVQ   96 (98)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.78  E-value=3.2e-18  Score=85.92  Aligned_cols=76  Identities=24%  Similarity=0.409  Sum_probs=64.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+.+|+++.|.|.+.|.|.|.+.|++++..+.. .++.... .   .|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus        13 ~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~-~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~   87 (89)
T d1biha4          13 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTD-S---GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ   87 (89)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEET-T---EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEee-e---eEEECCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            5678899999999999999999999999998854 3444432 2   699999999999999999999999888877776


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      |
T Consensus        88 V   88 (89)
T d1biha4          88 V   88 (89)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=8e-18  Score=86.22  Aligned_cols=82  Identities=21%  Similarity=0.417  Sum_probs=65.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc--EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      +.+..|+++.|.|.+.|.|.|.+.|++++..+.....  ...........|.|.++...|.|.|+|.+.|..|.....+.
T Consensus        15 ~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   94 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH   94 (100)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            4567899999999999999999999999988754321  11122223458999999999999999999999999988888


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus        95 l~V~   98 (100)
T d1qz1a3          95 LKVF   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.76  E-value=2.2e-18  Score=87.89  Aligned_cols=80  Identities=24%  Similarity=0.463  Sum_probs=65.2

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEE-EEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      .+..|+++.|.|.+.|.|.|.+.|++++..+....+.. .........|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus        16 ~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   95 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   95 (97)
T ss_dssp             EECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            46789999999999999999999999999886543221 11122234899999999999999999999999988888877


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      |
T Consensus        96 V   96 (97)
T d3dara1          96 V   96 (97)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.74  E-value=1.9e-17  Score=84.36  Aligned_cols=82  Identities=20%  Similarity=0.340  Sum_probs=65.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE--EEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~   78 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+......  ..........|.|.++...|.|.|+|.+.|..|.. ...
T Consensus        12 ~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s   91 (97)
T d1biha3          12 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS   91 (97)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred             CEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEE
Confidence            567889999999999999999999999999987654332  22222334589999999999999999999998875 446


Q ss_pred             EEEEe
Q psy12132         79 IQLSG   83 (126)
Q Consensus        79 ~~l~~   83 (126)
                      +.|.|
T Consensus        92 ~~L~V   96 (97)
T d1biha3          92 LKLTV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=82.91  Aligned_cols=75  Identities=11%  Similarity=0.065  Sum_probs=62.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +..+.+|+++.|.|.+.|.|.|.+.|++++..+..       ..   ..|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~-------~~---~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-------GG---KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE-------ES---SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee-------ee---eeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            34678999999999999999999999987643321       11   268999999999999999999999999888888


Q ss_pred             EecCC
Q psy12132         82 SGIPN   86 (126)
Q Consensus        82 ~~~~~   86 (126)
                      .|...
T Consensus        78 ~V~~~   82 (84)
T d2nxyb2          78 VVLAF   82 (84)
T ss_dssp             CEECC
T ss_pred             EEEec
Confidence            87543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.6e-17  Score=81.66  Aligned_cols=82  Identities=17%  Similarity=0.318  Sum_probs=64.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~   78 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++++..+....+.....  ......|.|.+++..|.|.|+|.+.|..|.. +..
T Consensus         5 ~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~   84 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   84 (91)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             eEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEE
Confidence            4678899999999999999999999999999887655443332  2234579999999999999999999988864 344


Q ss_pred             EEEEe
Q psy12132         79 IQLSG   83 (126)
Q Consensus        79 ~~l~~   83 (126)
                      +.|.|
T Consensus        85 ~~l~V   89 (91)
T d1rhfa1          85 VWLTV   89 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=3e-17  Score=82.66  Aligned_cols=77  Identities=18%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++.......      ......|.|.++...|.|.|+|.+.|..|.....+.|
T Consensus        14 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   87 (91)
T d1cs6a3          14 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI   87 (91)
T ss_dssp             EEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEE
Confidence            4677899999999999999999999999664332111      1122379999999999999999999999988888877


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus        88 ~V~   90 (91)
T d1cs6a3          88 IIH   90 (91)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.7e-17  Score=82.66  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=63.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      +.+..|+++.|.|.+.|.|.|.+.|++++..+....   .........|.|.++...|.|.|+|.+.|..|.....+.|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            456789999999999999999999999775543222   22233456899999999999999999999999988888877


Q ss_pred             e
Q psy12132         83 G   83 (126)
Q Consensus        83 ~   83 (126)
                      +
T Consensus        88 V   88 (90)
T d1vcaa2          88 I   88 (90)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.70  E-value=3e-16  Score=81.35  Aligned_cols=82  Identities=23%  Similarity=0.423  Sum_probs=61.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEec----cCC--cEE-------EEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAIT----LGG--RID-------MHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~----~~~--~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++....    ...  ...       .........|.|.++...|.|.|+|.+
T Consensus        14 ~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   93 (109)
T d2fdbp2          14 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA   93 (109)
T ss_dssp             CEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEE
T ss_pred             CEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEE
Confidence            5778899999999999999999999998653321    100  001       111222457999999999999999999


Q ss_pred             ecCCceeEEEEEEEe
Q psy12132         69 SNNLGSSQQFIQLSG   83 (126)
Q Consensus        69 ~~~~~~~~~~~~l~~   83 (126)
                      .|..|...+.+.|.|
T Consensus        94 ~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          94 GNSIGISFHSAWLTV  108 (109)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999999988888775

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.8e-16  Score=78.72  Aligned_cols=77  Identities=22%  Similarity=0.381  Sum_probs=62.6

Q ss_pred             ceeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+. +.|.+.+.|++++..+.....  ....+   .|.|.++...|.|.|+|.+.|..|...+.+.
T Consensus        11 ~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~   85 (89)
T d1gl4b_          11 SQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   85 (89)
T ss_dssp             EEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEETT---EEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc--Eeece---EEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence            35688999999999997 567889999998866554332  22233   7999999999999999999999998888887


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.|
T Consensus        86 l~V   88 (89)
T d1gl4b_          86 LHV   88 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=8.2e-17  Score=81.18  Aligned_cols=79  Identities=23%  Similarity=0.356  Sum_probs=62.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc--EEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  +.....+   .|.|.++...|.|.|+|.+.|..+......
T Consensus        10 ~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~   86 (92)
T d1epfa2          10 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFK   86 (92)
T ss_dssp             SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             CEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee---eEEECCCCHHhCEEEEEEEEECcCCEEEEE
Confidence            46788999999999999999999999999988765533  3333232   699999999999999999999766555544


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .+.+
T Consensus        87 ~i~V   90 (92)
T d1epfa2          87 DIQV   90 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-16  Score=85.24  Aligned_cols=83  Identities=17%  Similarity=0.284  Sum_probs=66.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc-----------------------------CCcEEEEecCCeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-----------------------------GGRIDMHVSSEKHSLL   52 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-----------------------------~~~~~~~~~~~~~~l~   52 (126)
                      ++.+..|+++.|.|.+.|.|.|.+.|++++..+..                             ..++.+......+.|.
T Consensus        18 ~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~   97 (130)
T d1gxea_          18 TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFT   97 (130)
T ss_dssp             EEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEE
T ss_pred             CEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEE
Confidence            46788999999999999999999999986544321                             1133344444567899


Q ss_pred             EecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132         53 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus        53 i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      |.++...|.|.|+|.+.|..|...+.+.|.|.
T Consensus        98 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          98 VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             CSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            99999999999999999999999988888764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.9e-16  Score=79.03  Aligned_cols=81  Identities=20%  Similarity=0.265  Sum_probs=65.6

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEe----cC-CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV----SS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~----~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      .++...+.|.+.|.|.|.+.|++++..+..+.+.....    .. ....|.|.+++..|.|.|+|.+.|..|...+.+.|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            45667889999999999999999999987665444321    11 13579999999999999999999999999999998


Q ss_pred             EecCCC
Q psy12132         82 SGIPNI   87 (126)
Q Consensus        82 ~~~~~~   87 (126)
                      .+...|
T Consensus        95 ~V~~~P  100 (103)
T d1wwbx_          95 HFMGWP  100 (103)
T ss_dssp             CCSCCC
T ss_pred             EEEeCC
Confidence            875443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-15  Score=78.07  Aligned_cols=82  Identities=21%  Similarity=0.425  Sum_probs=65.6

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEE----ec--cCCcEEEEecCCeEEEEEecCC-CCCCEEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTA----IT--LGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~----~~--~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~   73 (126)
                      ++.+.+|+++.|.|.+.+.|.| .+.|++++..    +.  ...++..........|.|.++. ..|.|.|+|.+.|..|
T Consensus        11 ~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G   90 (101)
T d3b5ha1          11 SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG   90 (101)
T ss_dssp             EEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             cEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCC
Confidence            3567899999999999999987 6999986522    21  2245666666667799999998 5799999999999999


Q ss_pred             eeEEEEEEEe
Q psy12132         74 SSQQFIQLSG   83 (126)
Q Consensus        74 ~~~~~~~l~~   83 (126)
                      .....+.|.|
T Consensus        91 ~~~~~~~L~V  100 (101)
T d3b5ha1          91 SDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9988888876

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-16  Score=78.27  Aligned_cols=70  Identities=26%  Similarity=0.486  Sum_probs=59.2

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +++.+..|+++.|.|.+. .|.+.+.|++++..+....  ++....++....|.|.++...|.|.|+|.+.|.
T Consensus         8 ~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1           8 EDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             CCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             CCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc
Confidence            357788999999999984 6889999999998876543  466666667789999999999999999999874

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.6e-16  Score=78.64  Aligned_cols=81  Identities=21%  Similarity=0.356  Sum_probs=64.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      +..+.+|+++.|.|.+.+ +.+.+.|++++..+....+..+....  ..|.|.++...|.|.|+|.+.|..|... ..+.
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~--~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~   88 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIK   88 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT--TEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc--eEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence            345788999999999865 56899999999998877776655433  4899999999999999999999887664 4566


Q ss_pred             EEecC
Q psy12132         81 LSGIP   85 (126)
Q Consensus        81 l~~~~   85 (126)
                      |.|..
T Consensus        89 L~V~~   93 (96)
T d1l6za2          89 LDIIF   93 (96)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            66643

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=82.36  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             ceeccCCccEEEEEEeeecC---CCeeEEEECCEEec---cCCcEEEEe------cCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANP---PAKVEWFRDGTAIT---LGGRIDMHV------SSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~~---~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+..|+++.|.|.+.|.|   .|.+.|++++....   ...++....      ......|.|.++...|.|.|+|.+.
T Consensus         9 ~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (113)
T d2dava1           9 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   88 (113)
T ss_dssp             CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             eEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEE
Confidence            56788999999999999988   57999999764321   222332211      1123579999999999999999999


Q ss_pred             cCCceeEEEEEEEecCCC
Q psy12132         70 NNLGSSQQFIQLSGIPNI   87 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~   87 (126)
                      |..|...+.+.|.|...+
T Consensus        89 N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          89 YKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             CSSCEEEECCEEEEECCC
T ss_pred             eCCCEEEEEEEEEEEcCC
Confidence            999999888888875433

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.3e-16  Score=80.97  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             ceeccCCccEEEEEEeeecC---CCeeEEEECCEEec---cCCcEEEEe------cCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANP---PAKVEWFRDGTAIT---LGGRIDMHV------SSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~~---~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+..|+++.|.|.+.|.|   .|.+.|++++....   ...++....      ....+.|.|.+++..|.|.|+|.+.
T Consensus        13 ~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (110)
T d2avga1          13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVS   92 (110)
T ss_dssp             CEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEE
T ss_pred             eEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEE
Confidence            46788999999999999888   57899999764322   122332211      1123579999999999999999999


Q ss_pred             cCCceeEEEEEEEecC
Q psy12132         70 NNLGSSQQFIQLSGIP   85 (126)
Q Consensus        70 ~~~~~~~~~~~l~~~~   85 (126)
                      |..|...+.+.|.|..
T Consensus        93 N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          93 TKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             ETTEEEEEEEEEEEES
T ss_pred             ECCCeEEEEEEEEEEe
Confidence            9999999999998753

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-15  Score=77.12  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=61.7

Q ss_pred             ccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEE--ecC--CeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEEEec
Q psy12132          9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSS--EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI   84 (126)
Q Consensus         9 ~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~~~   84 (126)
                      ....+.|.+.|.|.|.+.|++++..+....+....  ...  ....|.|.+++..|.|.|+|.+.|..|...+.+.+.+.
T Consensus        18 ~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          18 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEE
Confidence            34557789999999999999999988766554332  222  23579999999999999999999999999999888875


Q ss_pred             C
Q psy12132         85 P   85 (126)
Q Consensus        85 ~   85 (126)
                      .
T Consensus        98 ~   98 (105)
T d1wwca_          98 K   98 (105)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-15  Score=78.09  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=63.6

Q ss_pred             eccCCccEE---EEEEeeecCCCeeEEEECCEEeccCCcEEEEe--cC-----CeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          4 ITAPDMRAE---IICNVYANPPAKVEWFRDGTAITLGGRIDMHV--SS-----EKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~---l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~--~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+..|..+.   +.|.+.|.|.|.+.|++++..+....+.....  ..     ..+.|.|.++...|.|.|+|.+.|..|
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            344445545   45588999999999999999987655443321  11     135799999999999999999999999


Q ss_pred             eeEEEEEEEecCCC
Q psy12132         74 SSQQFIQLSGIPNI   87 (126)
Q Consensus        74 ~~~~~~~l~~~~~~   87 (126)
                      ...+.+.+.+...|
T Consensus        88 ~~~~~i~v~v~~~P  101 (107)
T d1he7a_          88 QASASIMAAFMDNP  101 (107)
T ss_dssp             EEEEEEEECCCSCT
T ss_pred             EEEEEEEEEEEcCC
Confidence            99999888875443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.65  E-value=3.4e-17  Score=82.08  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=63.6

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      +++.+.+|+++.|.|.+ +.|.|.+.|+++|..+..+.++.+...+....|.|.++...|.|.|+|.+.|..+
T Consensus         9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_           9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE
Confidence            35778899999999998 5788999999999999888888888888788999999999999999999887543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-17  Score=81.69  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=63.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCE-EEEEEEecCCceeEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQ   80 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~   80 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+.....  .........|.|.++...|.| .|+|.+.|..|.....+.
T Consensus        11 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~   88 (92)
T d2ifga1          11 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ   88 (92)
T ss_dssp             SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred             CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEE
Confidence            45678899999999999999999999998865543211  112234568999999999999 799999999998887776


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.|
T Consensus        89 l~V   91 (92)
T d2ifga1          89 VNV   91 (92)
T ss_dssp             CCC
T ss_pred             EEE
Confidence            654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-15  Score=75.75  Aligned_cols=72  Identities=17%  Similarity=0.291  Sum_probs=55.3

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~   79 (126)
                      ++.+.+|+++.|.|.+.|.|.| ++.|++++..+.....         ..+.+......|.|.|+|.+.|..|.. +..+
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~   80 (85)
T d1rhfa2          10 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTA   80 (85)
T ss_dssp             CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------SSEEEEECCCSSCEEEEEEEEETTEEEECCCE
T ss_pred             cEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------cceEEecCCccccEEEEEEEEcCCCcEEEEEE
Confidence            4678899999999999999988 8999999988754321         134556666789999999999999854 3344


Q ss_pred             EEE
Q psy12132         80 QLS   82 (126)
Q Consensus        80 ~l~   82 (126)
                      .|.
T Consensus        81 ~v~   83 (85)
T d1rhfa2          81 TVH   83 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-15  Score=76.22  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=60.5

Q ss_pred             eeccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          3 SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      +.+.+|+++.|.|.+. +.|.|.+.|++.+..+.   .  .........|.|.++...|.|.|+|.+.|..|...+.+.|
T Consensus        13 ~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~--~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l   87 (90)
T d1gsma1          13 VAVALGASRQLTCRLACADRGASVQWRGLDTSLG---A--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL   87 (90)
T ss_dssp             EEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---C--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---e--eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEE
Confidence            4567899999999885 78899999998665432   1  1122344689999999999999999999999988888877


Q ss_pred             Ee
Q psy12132         82 SG   83 (126)
Q Consensus        82 ~~   83 (126)
                      .|
T Consensus        88 ~V   89 (90)
T d1gsma1          88 LV   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-15  Score=78.24  Aligned_cols=80  Identities=20%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEE-----Ee-cC------CeEEEEEecCCCCCCE-EEEEEEe
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-----HV-SS------EKHSLLVRHIKDTDFG-NYMCQAS   69 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~-----~~-~~------~~~~l~i~~~~~~d~g-~y~C~~~   69 (126)
                      +.+..|+++.|.|.+.+.|.|.+.|++++..+........     .. ..      ..+.|.|.++...|.| .|+|.+.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            4567899999999999999999999999988754322111     00 00      1357999999999999 5999999


Q ss_pred             cCCceeEEEEEEE
Q psy12132         70 NNLGSSQQFIQLS   82 (126)
Q Consensus        70 ~~~~~~~~~~~l~   82 (126)
                      |..|...+.+.|.
T Consensus        92 N~~G~~~~~i~L~  104 (107)
T d1iray3          92 NTHGIDAAYIQLI  104 (107)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE
Confidence            9999999888886

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4e-17  Score=80.82  Aligned_cols=70  Identities=17%  Similarity=0.322  Sum_probs=58.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL   81 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l   81 (126)
                      ++.+.+|+++.|.|.+.|.|.|.+.|++++..+....             .+.++++.|.|.|.|.+.|..|.....+.|
T Consensus        13 ~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l   79 (84)
T d2oz4a3          13 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTV   79 (84)
T ss_dssp             EEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEEEE
Confidence            4567889999999999999999999999887654322             234577899999999999999988888887


Q ss_pred             Eec
Q psy12132         82 SGI   84 (126)
Q Consensus        82 ~~~   84 (126)
                      .|.
T Consensus        80 ~V~   82 (84)
T d2oz4a3          80 NVL   82 (84)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.1e-15  Score=74.86  Aligned_cols=82  Identities=16%  Similarity=0.349  Sum_probs=62.6

Q ss_pred             ceeccCCccEEEEEEeeecCC-CeeEEEE-CCEEec-cCCcEEEE-ecCCeEEEEEecCCCCCCEEEEEEEecCCcee-E
Q psy12132          2 HSITAPDMRAEIICNVYANPP-AKVEWFR-DGTAIT-LGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-Q   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~-~~~~~~-~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~   76 (126)
                      ++.+..|+++.|.|.+.+.|. +.+.|++ ++..+. ...++... .......|.|.++...|.|.|+|.+.|..|.. .
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            356788999999999998885 7999998 455444 33455443 23445789999999999999999999998864 4


Q ss_pred             EEEEEEe
Q psy12132         77 QFIQLSG   83 (126)
Q Consensus        77 ~~~~l~~   83 (126)
                      +.+.|.+
T Consensus        89 ~tv~l~V   95 (97)
T d1epfa1          89 ATVNVKI   95 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=1.5e-16  Score=82.02  Aligned_cols=75  Identities=16%  Similarity=0.281  Sum_probs=57.9

Q ss_pred             ceeccCCccEEEEEEe-eecCCCeeEEEECCEEeccC--CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEE
Q psy12132          2 HSITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~   78 (126)
                      .+.+.+|+++.|.|.+ .+.|.+.+.|++++..+...  .+....  .....|.|.++...|.|.|+|.+.|..|.....
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee--cCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            4678899999999997 68899999999988654422  222222  223479999999999999999999987766544

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-15  Score=76.00  Aligned_cols=83  Identities=14%  Similarity=0.088  Sum_probs=57.8

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEE--CCEE-eccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFR--DGTA-ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-   76 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~--~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-   76 (126)
                      +++.+.+|+++.|.|.+.|.|.|.+.|++  .+.. +................|.|.++...|.|.|+|.+.|..|... 
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   88 (96)
T d2c9aa1           9 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS   88 (96)
T ss_dssp             CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence            35788999999999999999988765433  2222 2211222222222345799999999999999999999999764 


Q ss_pred             EEEEEEe
Q psy12132         77 QFIQLSG   83 (126)
Q Consensus        77 ~~~~l~~   83 (126)
                      ....|.|
T Consensus        89 ~~a~L~V   95 (96)
T d2c9aa1          89 NYAELVV   95 (96)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3345554

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-15  Score=75.29  Aligned_cols=68  Identities=15%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..+.+|+++.|.|.+. .|.+.+.|++++..+... .++.+...+....|.|.++...|.|.|+|.+.|.
T Consensus        16 ~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             EEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence            3577899999999984 688999999999888654 4566666667789999999999999999999774

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.60  E-value=4.1e-15  Score=74.18  Aligned_cols=74  Identities=12%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             eeccCCccEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          3 SITAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      ..+.+|+++.|.|.+.+. |.+.+.|+|++..+....        ....|.|.++...|+|.|.|.+.|..|... ..+.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence            457899999999999654 556899999998764221        223799999999999999999999877653 4555


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus        82 l~V~   85 (88)
T d2fcba2          82 ITVQ   85 (88)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6553

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=76.02  Aligned_cols=68  Identities=21%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             ceeccCCccEEEEEEeeecCC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          2 HSITAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+.+.+|+++.|.|.+.+.|. +++.|+|++..+....+.....++   .|.|.++...|.|.|+|.+.|..
T Consensus        15 ~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          15 VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR---RLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             EEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESS---EEEECSCCGGGCEEEEEESSSSC
T ss_pred             CEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCC---EEEECCCChhcCEEEEEEECCcc
Confidence            356788999999999988765 589999998877655554444333   89999999999999999998754

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=2.3e-15  Score=76.48  Aligned_cols=67  Identities=27%  Similarity=0.573  Sum_probs=53.0

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      ++++.|.|.+.|.|.|.+.|++++..+............ ...|.+..+...|.|.|+|.+.|..|..
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~N~~G~~   88 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCVATNARGTV   88 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET-TEEEEESCCHHHHCEEEEEEEEETTEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeee-eeEEEEecccccCCEEEEEEEEECCCEE
Confidence            478999999999999999999999887654332222221 2467788888999999999999999865

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.3e-15  Score=76.34  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEECCEEec---cCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFRDGTAIT---LGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~~~---~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+..|+++.|.|.+.+.| .|.+.|++++..+.   ...........  ....|.|.++...|.|.|+|.+.|..|...
T Consensus        13 ~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   92 (104)
T d2aw2a1          13 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE   92 (104)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence            4678899999999999998 48999999775432   11222222222  234699999999999999999999988653


Q ss_pred             -EEEEEEe
Q psy12132         77 -QFIQLSG   83 (126)
Q Consensus        77 -~~~~l~~   83 (126)
                       +.+.+.|
T Consensus        93 s~~~~l~V  100 (104)
T d2aw2a1          93 SHSTTLYV  100 (104)
T ss_dssp             CCCEEEEE
T ss_pred             EEEEEEEE
Confidence             3555554

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=3.2e-15  Score=75.51  Aligned_cols=74  Identities=19%  Similarity=0.316  Sum_probs=58.6

Q ss_pred             ceeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ++.+.+|+.+.|.|.+.|.|.| .+.|++++..+.......... .....|.|.++...|.|.|+|.+.|..|...
T Consensus        11 ~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          11 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            4678899999999999999866 799999998876443222222 2234799999999999999999999988643

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.7e-16  Score=77.26  Aligned_cols=74  Identities=18%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC-CcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ...+.+|+++.|.|.+.+ +.|.+.|++++..+... .++....++   .|.|.++...|.|.|+|.+.|..+......
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            356889999999999987 67899999998776543 343333333   699999999999999999999777554433

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.57  E-value=5.4e-15  Score=73.88  Aligned_cols=73  Identities=14%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             eeccCCccEEEEEEeeec-CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE-EEEE
Q psy12132          3 SITAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~   80 (126)
                      ..+.+|+++.|.|.+.+. |.+.+.|++++..+...     ...   ..+.|.++...|.|.|.|.+.|..+... ..+.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----~~~---~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HHN---SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EEC---CCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-----ccc---cccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence            457899999999998644 55589999999876421     111   2688999999999999999998876542 4455


Q ss_pred             EEe
Q psy12132         81 LSG   83 (126)
Q Consensus        81 l~~   83 (126)
                      |.|
T Consensus        84 itV   86 (89)
T d1fnla2          84 ITI   86 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.6e-16  Score=78.55  Aligned_cols=82  Identities=16%  Similarity=0.263  Sum_probs=63.4

Q ss_pred             eeccCCccEEEEEEee-ecCCCeeEEEECCEEecc--CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      +.+.+|+.+.|.|.+. +.|.+.+.|++++..+..  .....+...+  ..|.|.++...|.|.|+|.+.|..|.....+
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~   89 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI   89 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeEEEEE
Confidence            4667899999999884 678899999998754332  2222222222  2799999999999999999999999999999


Q ss_pred             EEEecCC
Q psy12132         80 QLSGIPN   86 (126)
Q Consensus        80 ~l~~~~~   86 (126)
                      .|.|...
T Consensus        90 ~L~V~~~   96 (101)
T d1iray1          90 SAKFVEN   96 (101)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9987643

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=72.46  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=56.5

Q ss_pred             eeccCCccEEEEEEeeecC-CCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee-EEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQ   80 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~   80 (126)
                      ..+.+|+++.|.|.+.+.+ ...+.|+++|..+.....        ...|.|.+++..|.|.|.|.+.|..+.. +..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            4578899999999997654 458999999987753221        1269999999999999999999987654 34555


Q ss_pred             EEec
Q psy12132         81 LSGI   84 (126)
Q Consensus        81 l~~~   84 (126)
                      |.|.
T Consensus        82 i~V~   85 (89)
T d1f2qa2          82 ITVI   85 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=74.56  Aligned_cols=69  Identities=22%  Similarity=0.375  Sum_probs=56.0

Q ss_pred             eeccCCccEEEEE------EeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          3 SITAPDMRAEIIC------NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         3 ~~~~~g~~~~l~C------~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      +.+..|....|.|      .+.+.|.|.+.|++++..+....+.....++   .|.|.++...|.|.|+|.+.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCC
Confidence            4567899999999      5578899999999999998765544444444   7999999999999999999986553

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.2e-14  Score=75.30  Aligned_cols=80  Identities=23%  Similarity=0.515  Sum_probs=58.3

Q ss_pred             eccCCccEEEEEEee-ecCCCeeEEEECCEEeccCCcEE--------EEecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          4 ITAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRID--------MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      .+..|+++.|.|.+. +.|.+.+.|++++..+.......        .........|.|.++...|.|.|+|.+.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            467899999999984 79999999999988765332211        112222347899999999999999999999886


Q ss_pred             eEE--EEEEEe
Q psy12132         75 SQQ--FIQLSG   83 (126)
Q Consensus        75 ~~~--~~~l~~   83 (126)
                      ...  .+.+.+
T Consensus        93 ~~~s~~v~l~V  103 (110)
T d1f97a2          93 AMRSEAAHMDA  103 (110)
T ss_dssp             CEECCCEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            643  455554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-15  Score=78.27  Aligned_cols=77  Identities=18%  Similarity=0.320  Sum_probs=58.1

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEeccC------------CcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLG------------GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      .+.+.+|+++.|.|.+.+.|.|.+.|++++..+...            .+... .   ...|.|.++...|.|.|+|.+.
T Consensus        13 ~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~L~I~~v~~~D~G~Y~C~a~   88 (105)
T d1nbqa1          13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-L---PTGITFKSVTREDTGTYTCMVS   88 (105)
T ss_dssp             BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-E---TTEEECSCCCTTSCSEEEEEEE
T ss_pred             eEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeee-c---CceEEEecccccceeeEEEEEE
Confidence            356788999999999999999999999865332211            11111 1   1379999999999999999999


Q ss_pred             cCCceeEEEEEEE
Q psy12132         70 NNLGSSQQFIQLS   82 (126)
Q Consensus        70 ~~~~~~~~~~~l~   82 (126)
                      |..|.....+.+.
T Consensus        89 n~~G~~~~~~~v~  101 (105)
T d1nbqa1          89 EEGGNSYGEVKVK  101 (105)
T ss_dssp             ETTSSCEECCEEE
T ss_pred             ECCCCEEEEEEEE
Confidence            9988876655554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-15  Score=78.41  Aligned_cols=77  Identities=23%  Similarity=0.478  Sum_probs=57.8

Q ss_pred             eeccCCccEEEEEEe-eecCCCeeEEEECCEEeccCCcEEE-------EecCCeEEEEEecCCCCCCEEEEEEEecCCce
Q psy12132          3 SITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDM-------HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS   74 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   74 (126)
                      ..+..|+++.|.|.+ .+.|.+.+.|++++..+....+...       ........|.|.++...|.|.|+|.+.|..|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            346789999999998 4799999999999877654322211       11112347899999999999999999999887


Q ss_pred             eEEEE
Q psy12132         75 SQQFI   79 (126)
Q Consensus        75 ~~~~~   79 (126)
                      ...+.
T Consensus        92 ~~~s~   96 (104)
T d1nbqa2          92 PMTSN   96 (104)
T ss_dssp             CEECC
T ss_pred             eEEEE
Confidence            76543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.9e-13  Score=69.79  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=57.2

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEec----cC--------CcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAIT----LG--------GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~----~~--------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      ++.+.+|+++.|.|.+.+.|.|.+.|++.+....    ..        .+.. ..   ..+|.|.++...|.|.|+|.+.
T Consensus        10 ~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~tL~I~~v~~~D~G~Y~C~a~   85 (102)
T d1f97a1          10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT-FS---SSGITFSSVTRKDNGEYTCMVS   85 (102)
T ss_dssp             EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE-EE---TTEEEESCCCGGGCEEEEEEEE
T ss_pred             cEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEE-ec---CCEEEEeECCccCCEEEEEEEE
Confidence            3667889999999999999999999998432111    11        1111 11   2379999999999999999999


Q ss_pred             cCCceeEEEEEEE
Q psy12132         70 NNLGSSQQFIQLS   82 (126)
Q Consensus        70 ~~~~~~~~~~~l~   82 (126)
                      |..|.....+.+.
T Consensus        86 n~~g~~~~~~~v~   98 (102)
T d1f97a1          86 EEGGQNYGEVSIH   98 (102)
T ss_dssp             ETTSSSEEEEEEE
T ss_pred             ECCCCEEEEEEEE
Confidence            9988776665544

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.47  E-value=1.4e-13  Score=68.02  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=51.3

Q ss_pred             eeccCCccEEEEEEeeecCCC-eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+.+|+++.|.|.+.+.|.+ .+.|++++..+....          ..|.|..+...|.|.|.|.+.+..++..
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns~~S~~   78 (85)
T d2fcba1          14 INVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQTSLSDP   78 (85)
T ss_dssp             SEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTSBCCCC
T ss_pred             eEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCCccccc
Confidence            467889999999999888776 588999998775432          2588899999999999999888654443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=3.4e-14  Score=73.70  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             eccCCccEEEEEEe-eecCCCeeEEEECCEEeccC-------CcEEEEecCCeEEEEEecCCCCCCE---EEEEEEecCC
Q psy12132          4 ITAPDMRAEIICNV-YANPPAKVEWFRDGTAITLG-------GRIDMHVSSEKHSLLVRHIKDTDFG---NYMCQASNNL   72 (126)
Q Consensus         4 ~~~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~   72 (126)
                      .+.+|+++.|.|.+ .|.|.|.+.|++++..+...       .++....++   .|.|.+++..|.|   .|.|.+.|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc---ccEEeeeEeeccCCceEEEEEEEeCC
Confidence            46789999999986 89999999999976543221       223333333   7999998887766   7999999999


Q ss_pred             ceeEEEEEEEec
Q psy12132         73 GSSQQFIQLSGI   84 (126)
Q Consensus        73 ~~~~~~~~l~~~   84 (126)
                      |.....+.+.+.
T Consensus        90 g~~~~~~~~~~i  101 (111)
T d1biha2          90 VDEEVVLVEYEI  101 (111)
T ss_dssp             CSSCEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            888776655543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.46  E-value=3.5e-13  Score=66.46  Aligned_cols=63  Identities=19%  Similarity=0.328  Sum_probs=49.9

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS   75 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   75 (126)
                      ..+.+|++++|.|.+.+.|.+. +.|++++..+...          ...|.|.++...|.|.|+|.+.+...+.
T Consensus        15 ~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~s~~S~   78 (84)
T d1fnla1          15 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLSTLSD   78 (84)
T ss_dssp             SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSSCCCC
T ss_pred             cEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccCCCccc
Confidence            4678899999999999888875 5667888765432          1279999999999999999988765443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.9e-15  Score=76.62  Aligned_cols=83  Identities=23%  Similarity=0.443  Sum_probs=63.6

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEECCEEeccC--CcEEEEe----cCCeEEEEEecCCCCC-CEEEEEEEecCCc
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLG--GRIDMHV----SSEKHSLLVRHIKDTD-FGNYMCQASNNLG   73 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~~~~~~~~~--~~~~~~~----~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~   73 (126)
                      .+.+.+|+++.|.|.+.+.+ .+.+.|++++..+...  .++....    ++..+.|.|.++...| .|.|+|.+.|..|
T Consensus        15 ~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G   94 (115)
T d2crya1          15 TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG   94 (115)
T ss_dssp             CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCC
Confidence            35677899999999998854 5579999988776533  3333321    1123579999999998 5899999999999


Q ss_pred             eeEEEEEEEec
Q psy12132         74 SSQQFIQLSGI   84 (126)
Q Consensus        74 ~~~~~~~l~~~   84 (126)
                      ...+.+.|.+.
T Consensus        95 ~~~~~~~L~V~  105 (115)
T d2crya1          95 SDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEEECCCCS
T ss_pred             eEEEEEEEEEE
Confidence            99999888775

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=68.24  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=55.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECCEEecc--CCcE--------EEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDGTAITL--GGRI--------DMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~--~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+....|++++|.|... .|.+.+.|.+++..+..  ....        ....+..+..|.|.+++..|+|.|.|.+.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            46788999999999864 68889999998866531  1111        1111223457999999999999999999887


Q ss_pred             CceeEEEE
Q psy12132         72 LGSSQQFI   79 (126)
Q Consensus        72 ~~~~~~~~   79 (126)
                      .+.....+
T Consensus        83 ~~t~~~~l   90 (93)
T d1ccza1          83 TDTMKFFL   90 (93)
T ss_dssp             CSCEEEEE
T ss_pred             CcEEEEEE
Confidence            66555433

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=70.36  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=57.4

Q ss_pred             eeccCCccEEEEEEeee-cCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeEEEE
Q psy12132          3 SITAPDMRAEIICNVYA-NPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI   79 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~   79 (126)
                      ..+.+|+.++|.|.+.| .|.+  ++.|++++..+.....   ........|.|.....+|.|.|+|.+.|..|.....+
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~   90 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL   90 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeE
Confidence            45678999999999986 4545  5789999987753211   1112245799999999999999999999888776555


Q ss_pred             EEEe
Q psy12132         80 QLSG   83 (126)
Q Consensus        80 ~l~~   83 (126)
                      .+.+
T Consensus        91 ~~~~   94 (103)
T d1iama1          91 FENT   94 (103)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            5544

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6e-13  Score=65.31  Aligned_cols=64  Identities=22%  Similarity=0.287  Sum_probs=47.5

Q ss_pred             eeccCCccEEEEEEeeecCCCe-eEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCceeE
Q psy12132          3 SITAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ   76 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~   76 (126)
                      ..+.+|+++.|.|.+.+.|.+. ..|++++..+....          ..|.|.++...|.|.|.|.+.+..++..
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s~~S~~   75 (82)
T d1f2qa1          11 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQVNESEP   75 (82)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTSSCCCC
T ss_pred             eEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCCCCccc
Confidence            4578899999999999888874 56778887664322          2699999999999999999888655443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-12  Score=67.53  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             eeccCCccEEEEEEeee-c--CCCeeEEEECCEEeccCCcEEEE--ecCCeEEEEEecCCCCCCEEEEEEEecCCceeEE
Q psy12132          3 SITAPDMRAEIICNVYA-N--PPAKVEWFRDGTAITLGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ   77 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~-~--p~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~   77 (126)
                      ..+.+|+.++|.|.+.| .  |.+++.|++++..+.........  .......|.+.....+|.|.|+|.+.|..+....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            35678999999999986 3  34479999999887532211111  1112346777777777788999999998765544


Q ss_pred             EEEEE
Q psy12132         78 FIQLS   82 (126)
Q Consensus        78 ~~~l~   82 (126)
                      .+.+.
T Consensus        92 ~~~~~   96 (106)
T d1zxqa1          92 NIFHK   96 (106)
T ss_dssp             CEEEE
T ss_pred             eeEec
Confidence            44443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.4e-10  Score=60.92  Aligned_cols=84  Identities=18%  Similarity=0.317  Sum_probs=58.8

Q ss_pred             ceeccCCccEEEEEEeeecC---CCeeEEEECCEE----e-------c------cCCcEEEEec---CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYANP---PAKVEWFRDGTA----I-------T------LGGRIDMHVS---SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~~~----~-------~------~~~~~~~~~~---~~~~~l~i~~~~~   58 (126)
                      ++.+..|++++|.|.+....   ...+.|++.+..    +       .      ...+..+...   .++.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            46788999999999975333   235899885421    0       0      0112333221   2357999999999


Q ss_pred             CCCEEEEEEEecCCceeEEEEEEEecC
Q psy12132         59 TDFGNYMCQASNNLGSSQQFIQLSGIP   85 (126)
Q Consensus        59 ~d~g~y~C~~~~~~~~~~~~~~l~~~~   85 (126)
                      .|.|.|.|.+.+..+.....+.|.|..
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            999999999999888888888888753

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=4.1e-11  Score=60.50  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=55.1

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECCEEecc----------CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDGTAITL----------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +....|+++.|.|......  ...+.|++++..+..          ..+.....+   .+|.|.+++..|+|.|+|.+.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n---gSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC---ccEEEeCCCHHHCEEEEEEEEe
Confidence            5677899999999642222  237999998866531          123333333   3799999999999999999998


Q ss_pred             CCcee--EEEEEEEe
Q psy12132         71 NLGSS--QQFIQLSG   83 (126)
Q Consensus        71 ~~~~~--~~~~~l~~   83 (126)
                      ..|..  ...+.|.|
T Consensus        82 ~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          82 TNGTRILNKALDLRI   96 (98)
T ss_dssp             TTCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
Confidence            87765  55666665

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=5e-10  Score=57.29  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=51.0

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEec-------------------cCCcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAIT-------------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~-------------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      .+.+|+++.|.|.........+.|+|......                   ...|..+..+   .+|.|.++...|.|.|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n---gSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN---GSLLFQMITMKDMGVY   86 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT---SCEEECSCCGGGCEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc---ccEEEcCCCchhCEEE
Confidence            46789999999985434456899988532110                   0124444433   3899999999999999


Q ss_pred             EEEEecCC-ceeEEEEEEE
Q psy12132         65 MCQASNNL-GSSQQFIQLS   82 (126)
Q Consensus        65 ~C~~~~~~-~~~~~~~~l~   82 (126)
                      +|.+.+.. +...+.+.|.
T Consensus        87 ~c~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          87 TLDMTDENYRRTQATVRFH  105 (107)
T ss_dssp             EEEEEETTEEECCCCEEEC
T ss_pred             EEEEEECCCCEEEEEEEEE
Confidence            99987654 3334444444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-09  Score=56.87  Aligned_cols=81  Identities=25%  Similarity=0.446  Sum_probs=54.7

Q ss_pred             eeccCCccEEEEEEeeecCCC----eeEEEEC--CE-----Ee---------c-----cCCcEEEEec---CCeEEEEEe
Q psy12132          3 SITAPDMRAEIICNVYANPPA----KVEWFRD--GT-----AI---------T-----LGGRIDMHVS---SEKHSLLVR   54 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~----~~~w~~~--~~-----~~---------~-----~~~~~~~~~~---~~~~~l~i~   54 (126)
                      +.+.+|+++.|.|.....+..    .+.|++.  +.     .+         .     ...+..+...   .....|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            567889999999998644332    4789862  10     00         0     0123333211   124579999


Q ss_pred             cCCCCCCEEEEEEEecCCceeEEEEEEEe
Q psy12132         55 HIKDTDFGNYMCQASNNLGSSQQFIQLSG   83 (126)
Q Consensus        55 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~~   83 (126)
                      +++..|.|.|.|.+.+..+.....+.|.|
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            99999999999999988777777777665

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.4e-09  Score=51.86  Aligned_cols=69  Identities=14%  Similarity=0.365  Sum_probs=47.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECCE--EeccC------------CcEEEEe---cCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDGT--AITLG------------GRIDMHV---SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~~--~~~~~------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +...+|++++|+|.........+.|++...  .+...            .++....   ..+..+|.|.+++..|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            566789999999998766667899987532  11111            1221111   112457999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        84 C~v~~~   89 (97)
T d2nxyb1          84 CEVEDQ   89 (97)
T ss_dssp             EEETTE
T ss_pred             EEEecC
Confidence            998763

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=4.1e-08  Score=49.89  Aligned_cols=68  Identities=16%  Similarity=0.379  Sum_probs=49.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e---------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +..   +         ....++.....+....|.|.+++.+|++.|.|..
T Consensus        11 lsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (106)
T d1i8ka_          11 LSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQ   90 (106)
T ss_dssp             EECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEec
Confidence            5678999999999876555567899863  211   1         1124555555555678999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (106)
T d1i8ka_          91 SF   92 (106)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.77  E-value=4.3e-08  Score=49.91  Aligned_cols=68  Identities=19%  Similarity=0.464  Sum_probs=50.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e---------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +..   +         ....++..........|.|.+++..|++.|.|..
T Consensus        11 l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1j1pl_          11 LSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEc
Confidence            5678999999999876555667999873  211   1         1224666666666789999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      .+
T Consensus        91 ~~   92 (107)
T d1j1pl_          91 AN   92 (107)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.76  E-value=6.2e-08  Score=49.20  Aligned_cols=68  Identities=15%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE--E-e-c--------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT--A-I-T--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~--~-~-~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.  . + .        ...++.....+....|.|.+++.+|++.|.|.+
T Consensus        10 l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~   89 (106)
T d1a0ql1          10 LSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQ   89 (106)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEE
Confidence            5678999999999876555557999973  11  1 1 1        124555555556789999999999999999976


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        90 ~~   91 (106)
T d1a0ql1          90 YY   91 (106)
T ss_dssp             CS
T ss_pred             eC
Confidence            54

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.7e-08  Score=52.14  Aligned_cols=84  Identities=15%  Similarity=0.288  Sum_probs=52.3

Q ss_pred             ceeccCCccEEEEEEeeec---CCCeeEEEECC--E---Ee-c--------cCCcEEEE--ecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYAN---PPAKVEWFRDG--T---AI-T--------LGGRIDMH--VSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~---p~~~~~w~~~~--~---~~-~--------~~~~~~~~--~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+.+|++++|.|.....   ....+.|++..  .   .+ .        ...++.+.  .......|.|.+++..|+|
T Consensus         8 ~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG   87 (116)
T d1xeda_           8 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   87 (116)
T ss_dssp             EEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCE
Confidence            4677899999999986422   12356787742  1   11 0        11233332  2334578999999999999


Q ss_pred             EEEEEEecCCceeEEEEEEEecC
Q psy12132         63 NYMCQASNNLGSSQQFIQLSGIP   85 (126)
Q Consensus        63 ~y~C~~~~~~~~~~~~~~l~~~~   85 (126)
                      .|.|.+..........+.|.|..
T Consensus        88 ~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          88 RYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             EEEEEESCGGGCCEEEEEEEEEC
T ss_pred             EEEEEEEcCCCCceEeEEEEEEC
Confidence            99998875433334455666543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=2.8e-08  Score=51.37  Aligned_cols=82  Identities=17%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             ceeccCCccEEEEEEeeec----CCCeeEEEEC--C----EEec----------c----CCcEEEEe--cCCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYAN----PPAKVEWFRD--G----TAIT----------L----GGRIDMHV--SSEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~----p~~~~~w~~~--~----~~~~----------~----~~~~~~~~--~~~~~~l~i~~   55 (126)
                      ++.+..|++++|.|.....    ....+.|++.  +    ..+.          .    ..|+.+..  ...+.+|.|.+
T Consensus         8 ~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (119)
T d1neua_           8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN   87 (119)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECS
T ss_pred             eEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECC
Confidence            4678889999999987522    2237899762  1    1110          0    12333322  12346899999


Q ss_pred             CCCCCCEEEEEEEecCCc--eeEEEEEEEe
Q psy12132         56 IKDTDFGNYMCQASNNLG--SSQQFIQLSG   83 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~~~--~~~~~~~l~~   83 (126)
                      ++..|+|.|.|.+.+..+  .....+.|.|
T Consensus        88 v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          88 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            999999999999887432  2333445544

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.72  E-value=3.1e-08  Score=51.10  Aligned_cols=69  Identities=12%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|.........+.|++.  +   +.+.         ...++.+..  ......|.|.+++..|+|.|.|
T Consensus        11 v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (115)
T d1lp9e1          11 VTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYC   90 (115)
T ss_dssp             EEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceE
Confidence            5678899999999987777778999874  2   1111         012333322  2224579999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+...
T Consensus        91 a~~~~   95 (115)
T d1lp9e1          91 ALFLA   95 (115)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            87543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.72  E-value=5.5e-08  Score=49.98  Aligned_cols=70  Identities=17%  Similarity=0.382  Sum_probs=48.3

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEE--EecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDM--HVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|+++.|.|...+.....+.|++..  .   .+.         ...++..  ........|.|.+++.+|+|.|.
T Consensus         9 ~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Yy   88 (113)
T d2bnqd1           9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYL   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEe
Confidence            356788999999999876555678999732  1   110         1122322  22334678999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+...
T Consensus        89 Ca~~~~   94 (113)
T d2bnqd1          89 CAVRPT   94 (113)
T ss_dssp             EEEEES
T ss_pred             EeEecC
Confidence            987643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.1e-08  Score=48.91  Aligned_cols=66  Identities=11%  Similarity=0.199  Sum_probs=45.8

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+..|++|+|.|... .....+.|++++........ .....+..+.+.|.++...|.|.|.|...+.
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            456899999999875 45668889998754321100 0011223457999999999999999987654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.70  E-value=5.7e-08  Score=49.45  Aligned_cols=68  Identities=18%  Similarity=0.370  Sum_probs=50.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Ee---------ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+         ....++..........|.|.++..+|++.|.|.+
T Consensus        11 ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1ospl1          11 FSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEee
Confidence            5678899999999886555557999973  21   11         1124666655556689999999999999999976


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d1ospl1          91 YW   92 (107)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=8.8e-08  Score=48.64  Aligned_cols=67  Identities=19%  Similarity=0.454  Sum_probs=49.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +   +.+.         ...++..........|.|.+++.+|++.|.|..
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1lk3l1          10 LTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQ   89 (106)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccc
Confidence            5678999999999987555567999873  2   1111         124565555556679999999999999999965


Q ss_pred             e
Q psy12132         69 S   69 (126)
Q Consensus        69 ~   69 (126)
                      .
T Consensus        90 ~   90 (106)
T d1lk3l1          90 S   90 (106)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=7e-08  Score=49.06  Aligned_cols=68  Identities=16%  Similarity=0.341  Sum_probs=49.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +..   +.         ...++..........|.|.+++.+|++.|.|.+
T Consensus        11 ~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   90 (107)
T d1c5cl1          11 LSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEec
Confidence            5678999999999987655667899973  221   11         113444444455679999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d1c5cl1          91 YA   92 (107)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.68  E-value=5.6e-08  Score=50.03  Aligned_cols=70  Identities=20%  Similarity=0.460  Sum_probs=49.0

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      .+.+.+|++++|.|.........+.|++..     ..+.         ...++....  ......|.|.+++.+|+|.|.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~   88 (114)
T d2cdea1           9 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   88 (114)
T ss_dssp             EEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccc
Confidence            356788999999999876666789999732     1111         112333322  224578999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+...
T Consensus        89 Ca~~~~   94 (114)
T d2cdea1          89 CVVSDR   94 (114)
T ss_dssp             EEEECS
T ss_pred             eeeecC
Confidence            988764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4e-08  Score=49.31  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=44.6

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+..|++++|.|... .+...+.|++++..... ..............+.|.++...|.|.|.|...+..
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~   85 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH   85 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCC
Confidence            466799999999875 45667888886532111 111111112233579999999999999999987654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.66  E-value=1.3e-07  Score=47.99  Aligned_cols=69  Identities=16%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.+|++++|.|.........+.|++..     +.+.         ...++..........|.|.+++.+|++.|.|.
T Consensus         9 sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1           9 TLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeee
Confidence            356789999999998865556678998742     1221         12466555555667899999999999999997


Q ss_pred             Eec
Q psy12132         68 ASN   70 (126)
Q Consensus        68 ~~~   70 (126)
                      ...
T Consensus        89 ~~~   91 (106)
T d1op3k1          89 HYA   91 (106)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            553

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=1.2e-07  Score=48.16  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=49.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +   ..+.         ...++..........|.|.+++.+|++.|.|.+
T Consensus        11 l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~   90 (107)
T d1kcvl1          11 MGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQ   90 (107)
T ss_dssp             EEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEe
Confidence            4577899999999987655667999973  2   1111         124555555556678999999999999999976


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d1kcvl1          91 SY   92 (107)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=1.6e-07  Score=47.77  Aligned_cols=68  Identities=21%  Similarity=0.420  Sum_probs=49.9

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+.         ...++..........|.|.+++.+|++.|.|..
T Consensus        11 l~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1d5il1          11 MYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeee
Confidence            5678999999999886555667889873  21   111         124666555566789999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d1d5il1          91 YD   92 (107)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.8e-08  Score=49.49  Aligned_cols=69  Identities=14%  Similarity=0.333  Sum_probs=47.5

Q ss_pred             ceeccCCccEEEEEEeeecCC----CeeEEEECCEEec--c----------CCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANPP----AKVEWFRDGTAIT--L----------GGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~----~~~~w~~~~~~~~--~----------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      ++.+..|+++.|+|.......    ..+.|.+++..+.  .          ..+.... ..++.+|.|.+++..|.|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cCCcEEEEECcCChHHCeEEE
Confidence            467788999999998753221    2577888765431  1          1233332 223568999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+.+.
T Consensus        82 C~V~~~   87 (105)
T d1dr9a1          82 CVVLKY   87 (105)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            998754

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.65  E-value=1.1e-07  Score=48.28  Aligned_cols=68  Identities=21%  Similarity=0.460  Sum_probs=49.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+.         ...++..........|.|.+++.+|++.|.|..
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~   90 (107)
T d1tjgl1          11 LSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQ   90 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEE
Confidence            5678999999999986555668899873  21   111         123555555556789999999999999999965


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d1tjgl1          91 LH   92 (107)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=1.6e-07  Score=47.77  Aligned_cols=68  Identities=24%  Similarity=0.496  Sum_probs=49.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+.         ...++..........|.|.+++.+|++.|.|.+
T Consensus        11 l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~   90 (107)
T d1mexl1          11 MSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQ   90 (107)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeE
Confidence            5678899999999876555567899973  21   111         124565555555678999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d1mexl1          91 YN   92 (107)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=3e-07  Score=46.77  Aligned_cols=68  Identities=21%  Similarity=0.491  Sum_probs=48.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Ee-c--------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AI-T--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~-~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+ .        ....+.....+....|.|.+++..|++.|.|..
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~   90 (108)
T d1jhll_          11 LVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQ   90 (108)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEE
T ss_pred             EEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEee
Confidence            5678899999999986555567999873  21   11 1        112344444555678999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (108)
T d1jhll_          91 HN   92 (108)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=2e-07  Score=47.50  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=49.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Ee-c--------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AI-T--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~-~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+ .        ...++..........|.|.+++.+|++.|.|.+
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~   90 (109)
T d1mqkl_          11 LSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQH   90 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEee
Confidence            5678899999999986555567999983  21   11 1        124555555556789999999999999999975


Q ss_pred             e
Q psy12132         69 S   69 (126)
Q Consensus        69 ~   69 (126)
                      .
T Consensus        91 ~   91 (109)
T d1mqkl_          91 H   91 (109)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.62  E-value=7.9e-08  Score=48.56  Aligned_cols=68  Identities=25%  Similarity=0.482  Sum_probs=49.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +..   +.         ...++..........|.|.+++.+|++.|.|.+
T Consensus         8 l~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   87 (103)
T d8faba1           8 VSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQA   87 (103)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeee
Confidence            5678999999999876555567899873  211   11         123555555556689999999999999999976


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        88 ~~   89 (103)
T d8faba1          88 WD   89 (103)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.62  E-value=2.9e-07  Score=47.26  Aligned_cols=70  Identities=13%  Similarity=0.227  Sum_probs=46.2

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC--CE---Eec---c-------CCcEEE--EecCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD--GT---AIT---L-------GGRIDM--HVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~~---~~~---~-------~~~~~~--~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|++++|.|..... ....+.|++.  +.   .+.   .       ..+...  ........|.|.++...|+|.
T Consensus         9 ~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   88 (114)
T d2ak4d1           9 EISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAV   88 (114)
T ss_dssp             EEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             eEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCC
Confidence            3567899999999986533 3446889873  21   111   0       012222  223346789999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+...
T Consensus        89 YyCa~~~~   96 (114)
T d2ak4d1          89 YFCALSGF   96 (114)
T ss_dssp             EEEEEECS
T ss_pred             ceEeCCCC
Confidence            99986654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.61  E-value=1.3e-07  Score=48.32  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|++++|.|..... ....+.|++.  +.   .+.         ...++..........|.|.+++..|+|.|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYC   86 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEE
Confidence            3567889999999987533 3446889973  21   111         1123333334456789999999999999999


Q ss_pred             EEec
Q psy12132         67 QASN   70 (126)
Q Consensus        67 ~~~~   70 (126)
                      .+..
T Consensus        87 a~~~   90 (110)
T d2esvd1          87 IVVR   90 (110)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            7653

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.61  E-value=2.2e-07  Score=47.37  Aligned_cols=68  Identities=16%  Similarity=0.365  Sum_probs=49.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|+++.|.|...+.....+.|++.  +   +.+.         ...++.....+....|.|.+++.+|++.|.|.+
T Consensus        13 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~   92 (109)
T d1bwwa_          13 LSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQ   92 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEee
Confidence            5678899999999987555567889873  1   1111         124555555556678999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        93 ~~   94 (109)
T d1bwwa_          93 YQ   94 (109)
T ss_dssp             CS
T ss_pred             cC
Confidence            53

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.60  E-value=5.4e-07  Score=46.37  Aligned_cols=70  Identities=14%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC--CE---Eec------------cCCcEEEEecC--CeEEEEEecCCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD--GT---AIT------------LGGRIDMHVSS--EKHSLLVRHIKDTDF   61 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~~---~~~------------~~~~~~~~~~~--~~~~l~i~~~~~~d~   61 (126)
                      .+.+.+|++++|.|..... ....+.|++.  +.   .+.            ...++......  ....|.|.+++..|+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   88 (116)
T d1tvda_           9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS   88 (116)
T ss_dssp             CEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccc
Confidence            4667899999999987543 4567899872  21   111            12355443322  346899999999999


Q ss_pred             EEEEEEEecC
Q psy12132         62 GNYMCQASNN   71 (126)
Q Consensus        62 g~y~C~~~~~   71 (126)
                      |.|.|.+...
T Consensus        89 g~YyCa~~~~   98 (116)
T d1tvda_          89 ATYYCAFTLP   98 (116)
T ss_dssp             EEEEEEEECT
T ss_pred             ccceeeEecC
Confidence            9999987654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.60  E-value=3.5e-07  Score=45.31  Aligned_cols=63  Identities=25%  Similarity=0.490  Sum_probs=44.2

Q ss_pred             CccEEEEEEeeecCCCeeEEEEC--CE---Eec--------cCCcEEEE--ecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRD--GT---AIT--------LGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~--------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      |++++|.|.........+.|++.  +.   .+.        ...++...  .......|.|.+++..|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            78999999987666778999873  21   111        11344332  223356899999999999999998764

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=3.1e-07  Score=47.72  Aligned_cols=69  Identities=12%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             ceeccCCccEEEEEEeeecCCCeeEEEEC--CEE------e-cc---------------CCcEEE-EecCCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYANPPAKVEWFRD--GTA------I-TL---------------GGRIDM-HVSSEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~------~-~~---------------~~~~~~-~~~~~~~~l~i~~~   56 (126)
                      .+.+.+|++++|.|...+.....+.|++.  +..      + ..               ..++.. ...+....|.|.++
T Consensus        10 ~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~   89 (122)
T d1nezg_          10 KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKF   89 (122)
T ss_dssp             CEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSC
T ss_pred             EEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEccc
Confidence            46788999999999987777778999872  211      1 00               012222 12233468999999


Q ss_pred             CCCCCEEEEEEEec
Q psy12132         57 KDTDFGNYMCQASN   70 (126)
Q Consensus        57 ~~~d~g~y~C~~~~   70 (126)
                      +..|.|.|.|.+..
T Consensus        90 ~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          90 SKENEGYYFCSVIS  103 (122)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCCEEEEeeEeC
Confidence            99999999997653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=6.7e-07  Score=45.87  Aligned_cols=69  Identities=14%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC--CE-E--e----------ccCCcEEEEec--CCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD--GT-A--I----------TLGGRIDMHVS--SEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~~-~--~----------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|+++.|.|..... ....+.|++.  +. +  +          ....++.....  .....|.|.+++..|+|.
T Consensus         8 ~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (114)
T d3bp5a1           8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGI   87 (114)
T ss_dssp             EEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeE
Confidence            3567899999999998543 3456889873  21 1  1          12245555433  235689999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (114)
T d3bp5a1          88 YLCGAIS   94 (114)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.9e-07  Score=47.94  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEECC----E--E--ec------------cCCcEEEEecCCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRDG----T--A--IT------------LGGRIDMHVSSEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~~----~--~--~~------------~~~~~~~~~~~~~~~l~i~~~~~~d   60 (126)
                      ++.+.+|++++|.|..... ....+.|++..    .  .  +.            ...++..........|.|.+++.+|
T Consensus         9 ~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~D   88 (114)
T d1akjd_           9 DRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRREN   88 (114)
T ss_dssp             SCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCC
Confidence            3567789999999998543 34568998732    1  1  10            0135555555556789999999999


Q ss_pred             CEEEEEEEecC
Q psy12132         61 FGNYMCQASNN   71 (126)
Q Consensus        61 ~g~y~C~~~~~   71 (126)
                      +|.|.|.+...
T Consensus        89 sg~YyCa~~~~   99 (114)
T d1akjd_          89 EGYYFCSALSN   99 (114)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEeEeEcCC
Confidence            99999987643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.5e-06  Score=43.05  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=41.1

Q ss_pred             cCCccEEEEEEeee-cCCCeeEEEECCEEeccCCcEEEEec--CCe---EEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          6 APDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVS--SEK---HSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         6 ~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~~~~~~~~--~~~---~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      ..++.+.|.|.+.| .|.+.+.|.+++..+...........  +..   +.|.+.   ..+...|+|.+....-
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCC
Confidence            34677899999986 58889999999877654322222221  111   234443   3456689998887643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.58  E-value=8.3e-08  Score=48.82  Aligned_cols=68  Identities=18%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +..   +.         ...++..........|.|.+++.+|++.|.|..
T Consensus        11 ~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQH   90 (107)
T ss_dssp             CCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeee
Confidence            5678899999999876555667999973  211   11         113443344445679999999999999999975


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (107)
T d3cx5k1          91 HI   92 (107)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.56  E-value=1.2e-06  Score=44.72  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=48.4

Q ss_pred             eeccCCccEEEEEEeeec--CCCeeEEEEC--C----EEeccCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYAN--PPAKVEWFRD--G----TAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~--p~~~~~w~~~--~----~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +....|++++|.|...+.  ....+.|++.  +    ..+....++....+.  ....|.|.+++.+|+|.|.|.+...
T Consensus         9 ~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_           9 VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            567789999999987543  3457899973  2    223334455443322  3468999999999999999976654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.56  E-value=2.1e-07  Score=47.45  Aligned_cols=67  Identities=21%  Similarity=0.353  Sum_probs=45.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec---------cCCcEEEE--ecCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---------LGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~---------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|.........+.|++.  +..   +.         ...+....  .......|.|.+++..|+|.|.|
T Consensus         9 ~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (110)
T d1u3ha1           9 LTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC   88 (110)
T ss_dssp             EEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEE
T ss_pred             EEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEee
Confidence            5678899999999886544456899873  211   10         01222222  22335689999999999999999


Q ss_pred             EEe
Q psy12132         67 QAS   69 (126)
Q Consensus        67 ~~~   69 (126)
                      .+.
T Consensus        89 a~~   91 (110)
T d1u3ha1          89 AAS   91 (110)
T ss_dssp             CCE
T ss_pred             eec
Confidence            765

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.54  E-value=1e-07  Score=49.11  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---cC---------CcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---LG---------GRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---~~---------~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+.+|++++|.|.........+.|++.  +   ..+.   ..         .++..........|.|.+++.+|+|.|.
T Consensus        10 v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYF   89 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceec
Confidence            6678899999999987555667889872  2   1111   01         1112122233468999999999999999


Q ss_pred             EEEec
Q psy12132         66 CQASN   70 (126)
Q Consensus        66 C~~~~   70 (126)
                      |.+..
T Consensus        90 Ca~~~   94 (115)
T d1i9ea_          90 CAVSG   94 (115)
T ss_dssp             EEEEE
T ss_pred             ccccC
Confidence            97653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.54  E-value=3.3e-07  Score=47.14  Aligned_cols=69  Identities=14%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--C---EEec---c-------CCcEEEEe--cCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---L-------GGRIDMHV--SSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~---~~~~---~-------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+.+|+++.|.|.........+.|++.  +   +.+.   .       ..++....  ......|.|.+++..|+|.|.
T Consensus        10 v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   89 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYF   89 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccce
Confidence            5678899999999987655667999973  2   1111   0       01222221  222457999999999999999


Q ss_pred             EEEecC
Q psy12132         66 CQASNN   71 (126)
Q Consensus        66 C~~~~~   71 (126)
                      |.+...
T Consensus        90 Ca~~~~   95 (115)
T d1j8hd1          90 CAVSES   95 (115)
T ss_dssp             EEEESS
T ss_pred             eeecCC
Confidence            987653

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.9e-07  Score=47.53  Aligned_cols=69  Identities=14%  Similarity=0.293  Sum_probs=42.5

Q ss_pred             ceeccCCccEEEEEEeeecCCC---eeE--EEECCE-Eec---c--------CCcE--EEEecCCeEEEEEecCCCCCCE
Q psy12132          2 HSITAPDMRAEIICNVYANPPA---KVE--WFRDGT-AIT---L--------GGRI--DMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p~~---~~~--w~~~~~-~~~---~--------~~~~--~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      .+.+..|+++.|+|.....+..   .+.  |.++.. .+.   .        ..++  .......+.+|.|.+++..|.|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            4678899999999998633322   233  444322 110   0        0111  1112223468999999999999


Q ss_pred             EEEEEEec
Q psy12132         63 NYMCQASN   70 (126)
Q Consensus        63 ~y~C~~~~   70 (126)
                      .|.|.+..
T Consensus        83 ~Y~C~V~~   90 (110)
T d1ncna_          83 LYQCIIHH   90 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999864

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.53  E-value=1.3e-06  Score=44.75  Aligned_cols=69  Identities=26%  Similarity=0.484  Sum_probs=48.1

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEEC--CE----EeccCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRD--GT----AITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~--~~----~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      .+...+|++++|.|...+.  ....+.|++.  +.    .+....++....+.  ....|.|.+++.+|+|.|.|.+..
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_           9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            3567899999999998643  3356899873  21    22334455443322  346899999999999999998653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.52  E-value=5.8e-07  Score=45.96  Aligned_cols=70  Identities=16%  Similarity=0.334  Sum_probs=49.1

Q ss_pred             ceeccCCccEEEEEEeeecC---CCeeEEEECC--E---Ee-c--------cCCcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP---PAKVEWFRDG--T---AI-T--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p---~~~~~w~~~~--~---~~-~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      .+.+.+|++++|.|...+..   ...+.|++..  .   .+ .        ...++..........|.|.+++.+|++.|
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence            35678899999999876432   2358899732  1   11 1        12355555555678999999999999999


Q ss_pred             EEEEecC
Q psy12132         65 MCQASNN   71 (126)
Q Consensus        65 ~C~~~~~   71 (126)
                      .|...+.
T Consensus        89 yCa~~~~   95 (112)
T d1lgva1          89 YCSSYDG   95 (112)
T ss_dssp             EEEEECS
T ss_pred             EEeeecC
Confidence            9987653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.6e-07  Score=45.99  Aligned_cols=64  Identities=13%  Similarity=0.178  Sum_probs=45.2

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+..|++++|.|.......-.+.|+|++..... . .  ...+..+.+.+..+...|.|+|.|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~-~-~--~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP-Q-H--QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC-S-E--EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccce-E-E--cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            567899999999864334457889998853221 1 1  11233468999999999999999987643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.52  E-value=7.1e-07  Score=45.52  Aligned_cols=68  Identities=16%  Similarity=0.273  Sum_probs=47.4

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+.         ...++....  ......|.|.+++..|++.|.|
T Consensus        10 ~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (111)
T d1bd2d1          10 LSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFC   89 (111)
T ss_dssp             EEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEe
Confidence            5678999999999876655667889873  21   111         112333322  2346799999999999999999


Q ss_pred             EEec
Q psy12132         67 QASN   70 (126)
Q Consensus        67 ~~~~   70 (126)
                      .+..
T Consensus        90 a~~~   93 (111)
T d1bd2d1          90 AAME   93 (111)
T ss_dssp             EEES
T ss_pred             eccC
Confidence            7764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.6e-06  Score=43.96  Aligned_cols=69  Identities=13%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECC---E--Ee-c--------cCCcEEEEe--cCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDG---T--AI-T--------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~---~--~~-~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|......  ...+.|++..   .  .+ .        ...++....  ......|.|.+++..|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            5678999999999864332  2356798732   1  11 1        113443332  23457899999999999999


Q ss_pred             EEEEecC
Q psy12132         65 MCQASNN   71 (126)
Q Consensus        65 ~C~~~~~   71 (126)
                      .|.+...
T Consensus        86 ~C~v~~~   92 (108)
T d1hkfa_          86 WCRIYRP   92 (108)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            9987743

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.50  E-value=5.1e-07  Score=46.12  Aligned_cols=68  Identities=19%  Similarity=0.410  Sum_probs=48.5

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--C---EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|...+..  ...+.|++.  +   ..+.         ...++..........|.|.+++.+|++.|.|
T Consensus        10 ~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (111)
T d1rzfl1          10 VSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC   89 (111)
T ss_dssp             EEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             eEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEE
Confidence            5778899999999875432  346899863  1   1111         1235555555566899999999999999999


Q ss_pred             EEec
Q psy12132         67 QASN   70 (126)
Q Consensus        67 ~~~~   70 (126)
                      ....
T Consensus        90 A~~~   93 (111)
T d1rzfl1          90 GTWD   93 (111)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            7654

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=4.3e-07  Score=46.94  Aligned_cols=68  Identities=16%  Similarity=0.324  Sum_probs=48.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++..     ..+.         ...++..........|.|.+++..|++.|.|..
T Consensus        11 v~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~   90 (119)
T d1f3rb2          11 LSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ   90 (119)
T ss_dssp             ECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeec
Confidence            45788999999998765545678999741     1111         123444444445578999999999999999976


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        91 ~~   92 (119)
T d1f3rb2          91 YN   92 (119)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=6.6e-07  Score=45.60  Aligned_cols=68  Identities=15%  Similarity=0.292  Sum_probs=48.6

Q ss_pred             eeccCCccEEEEEEeeecCCC---eeEEEEC--C-EE--e---------ccCCcEEEEecCCeEEEEEecCCCCCCEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPA---KVEWFRD--G-TA--I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM   65 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~--~-~~--~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~   65 (126)
                      +.+.+|++++|.|...+....   .+.|++.  + .+  +         ....++..........|.|.++...|.|.|.
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Yy   89 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF   89 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEE
Confidence            457889999999998643322   3889872  2 11  1         0124666555566789999999999999999


Q ss_pred             EEEec
Q psy12132         66 CQASN   70 (126)
Q Consensus        66 C~~~~   70 (126)
                      |....
T Consensus        90 Ca~~~   94 (110)
T d1oaql_          90 CALWY   94 (110)
T ss_dssp             EEEEE
T ss_pred             EEccc
Confidence            98654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.48  E-value=8.4e-07  Score=45.48  Aligned_cols=68  Identities=24%  Similarity=0.421  Sum_probs=48.9

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEECC-----EEec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRDG-----TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|...+.-  ...+.|++..     ..+.         ...++..........|.|.+++..|++.|.|
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyC   89 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYC   89 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEE
Confidence            5678899999999986443  4568899742     1111         1135555555567799999999999999999


Q ss_pred             EEec
Q psy12132         67 QASN   70 (126)
Q Consensus        67 ~~~~   70 (126)
                      ....
T Consensus        90 A~~~   93 (114)
T d2rhea_          90 AAWN   93 (114)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.48  E-value=3.9e-07  Score=46.40  Aligned_cols=68  Identities=22%  Similarity=0.411  Sum_probs=48.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Ee-c--------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AI-T--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~-~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+ .        ...++..........|.|.+++.+|++.|.|..
T Consensus        10 l~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~   89 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQV   89 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEe
Confidence            5678899999999865444457899873  21   11 1        123555555556779999999999999999986


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        90 ~~   91 (109)
T d1w72l1          90 WD   91 (109)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.48  E-value=3.5e-07  Score=46.49  Aligned_cols=68  Identities=22%  Similarity=0.489  Sum_probs=47.9

Q ss_pred             eeccCCccEEEEEEeeec-CCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYAN-PPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~-p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +.+.+|+++.|.|..... ....+.|++.  +.   .+.         ...++..........|.|.+++..|+|.|.|.
T Consensus        11 ~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (108)
T d2fx7l1          11 QSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQ   90 (108)
T ss_dssp             EEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeee
Confidence            567889999999987533 2346889874  21   121         12355555555567899999999999999997


Q ss_pred             Eec
Q psy12132         68 ASN   70 (126)
Q Consensus        68 ~~~   70 (126)
                      +..
T Consensus        91 ~~~   93 (108)
T d2fx7l1          91 QYG   93 (108)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            653

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.6e-07  Score=47.30  Aligned_cols=70  Identities=19%  Similarity=0.380  Sum_probs=46.6

Q ss_pred             ceeccCCccEEEEEEeeecC-------CCeeEEEECCEE------ec--c---------CCcEEEEec--CCeEEEEEec
Q psy12132          2 HSITAPDMRAEIICNVYANP-------PAKVEWFRDGTA------IT--L---------GGRIDMHVS--SEKHSLLVRH   55 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-------~~~~~w~~~~~~------~~--~---------~~~~~~~~~--~~~~~l~i~~   55 (126)
                      .+.+.+|+++.|+|......       ...+.|++....      +.  .         ..++.+..+  ..+++|.|.+
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD   89 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECC
Confidence            46788999999999975211       124678875311      00  0         124454432  2467899999


Q ss_pred             CCCCCCEEEEEEEecC
Q psy12132         56 IKDTDFGNYMCQASNN   71 (126)
Q Consensus        56 ~~~~d~g~y~C~~~~~   71 (126)
                      ++..|+|.|.|.+...
T Consensus        90 v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          90 ARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CChHHCEEEEEEEEeC
Confidence            9999999999998653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.47  E-value=1.7e-06  Score=43.61  Aligned_cols=66  Identities=18%  Similarity=0.330  Sum_probs=46.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.... ....+.|++..  .   .+.         ...++..........|.|.+++.+|++.|.|..
T Consensus        10 l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          10 MSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             EEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEe
Confidence            56788999999998643 34468898742  1   111         123444444455678999999999999999965


Q ss_pred             e
Q psy12132         69 S   69 (126)
Q Consensus        69 ~   69 (126)
                      .
T Consensus        89 ~   89 (104)
T d1yqvl1          89 W   89 (104)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.46  E-value=1e-06  Score=44.93  Aligned_cols=68  Identities=18%  Similarity=0.326  Sum_probs=47.7

Q ss_pred             eeccCCccEEEEEEeeec-C---CCeeEEEEC--CEE----ec--------cCCcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYAN-P---PAKVEWFRD--GTA----IT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~-p---~~~~~w~~~--~~~----~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|..... .   ...+.|++.  +..    +.        ...++..........|.|.+++.+|++.|
T Consensus        11 ~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   90 (111)
T d2gsia1          11 LAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATY   90 (111)
T ss_dssp             EEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceE
Confidence            567899999999987532 1   234889873  211    11        12466655555678999999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|....
T Consensus        91 yCa~~~   96 (111)
T d2gsia1          91 YCSHIR   96 (111)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            997553

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.46  E-value=8.8e-07  Score=45.21  Aligned_cols=68  Identities=19%  Similarity=0.406  Sum_probs=47.4

Q ss_pred             eeccCCccEEEEEEeeecC----CCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANP----PAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p----~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|......    ...+.|++.  +.   .+.         ...++..........|.|.+++.+|++.|
T Consensus        11 l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   90 (111)
T d1j05a_          11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATY   90 (111)
T ss_dssp             EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccE
Confidence            4578899999999874321    234889873  22   111         12355555555678999999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|.+..
T Consensus        91 yCa~~~   96 (111)
T d1j05a_          91 YCQQTN   96 (111)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            997654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.1e-07  Score=44.33  Aligned_cols=61  Identities=10%  Similarity=0.238  Sum_probs=43.7

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      .+..|++++|.|... .....+.++|+|..-.    .........+.+.|.++...|.|.|+|...
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          14 EVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEETTCEEEEEEECS-SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             cccCCCcEEEEECCC-CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEeE
Confidence            467799999999875 4566788888764311    111222345689999999999999999643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=6.6e-07  Score=45.75  Aligned_cols=69  Identities=12%  Similarity=0.253  Sum_probs=47.1

Q ss_pred             ceeccCCccEEEEEEeeecC-CCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEE
Q psy12132          2 HSITAPDMRAEIICNVYANP-PAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p-~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      .+.+.+|++++|.|...+.. ...+.|++.  +.   .|.         ...++....+.....|.|.+++..|+|.|.|
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   86 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC   86 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEee
Confidence            35678999999999876443 345899983  21   111         0123333444456789999999999999999


Q ss_pred             EEec
Q psy12132         67 QASN   70 (126)
Q Consensus        67 ~~~~   70 (126)
                      .+..
T Consensus        87 a~~~   90 (112)
T d1kgcd1          87 ILPL   90 (112)
T ss_dssp             ECCC
T ss_pred             eEec
Confidence            7654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.41  E-value=1.5e-06  Score=44.56  Aligned_cols=69  Identities=17%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             ceeccCCccEEEEEEeeec-CCCeeEEEEC-----CEEe---c--------------cCCcEEEEe--cCCeEEEEEecC
Q psy12132          2 HSITAPDMRAEIICNVYAN-PPAKVEWFRD-----GTAI---T--------------LGGRIDMHV--SSEKHSLLVRHI   56 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~-p~~~~~w~~~-----~~~~---~--------------~~~~~~~~~--~~~~~~l~i~~~   56 (126)
                      .+.+.+|+++.|.|.+.+. ....+.|++.     .+.+   .              ...++....  ......|.|.++
T Consensus         7 ~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   86 (115)
T d2atpb1           7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNV   86 (115)
T ss_dssp             EEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSC
T ss_pred             cEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeeccc
Confidence            3578899999999998753 3457899874     2211   0              012222222  223468999999


Q ss_pred             CCCCCEEEEEEEec
Q psy12132         57 KDTDFGNYMCQASN   70 (126)
Q Consensus        57 ~~~d~g~y~C~~~~   70 (126)
                      +.+|+|.|.|....
T Consensus        87 ~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          87 KPEDSDFYFCATVG  100 (115)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCCcEEEEeEcC
Confidence            99999999997653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=1.9e-06  Score=44.40  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=47.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec--------------cCCcEEEEec-CCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT--------------LGGRIDMHVS-SEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~--------------~~~~~~~~~~-~~~~~l~i~~~~~~d~g   62 (126)
                      +.+.+|++++|.|...+.....+.|++.  +.   .+.              ...++..... .....|.|.+++..|++
T Consensus        11 ~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   90 (118)
T d2ij0c1          11 VIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSG   90 (118)
T ss_dssp             EEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCc
Confidence            5678899999999986655678999973  21   110              1134444332 23468999999999999


Q ss_pred             EEEEEEec
Q psy12132         63 NYMCQASN   70 (126)
Q Consensus        63 ~y~C~~~~   70 (126)
                      .|.|.+..
T Consensus        91 ~YyCa~~~   98 (118)
T d2ij0c1          91 FYVCSALA   98 (118)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEec
Confidence            99998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.38  E-value=1.6e-06  Score=44.24  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=46.8

Q ss_pred             eeccCCccEEEEEEeeecC-----CCeeEEEEC--CEE---ec---------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANP-----PAKVEWFRD--GTA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|++++|.|...+..     ...+.|++.  +..   +.         ...++.....+....|.|.+++.+|++.
T Consensus        11 ls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAv   90 (112)
T d1ncwl1          11 ISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGV   90 (112)
T ss_dssp             EEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEe
Confidence            4578899999999865322     235889863  211   11         1245555555566789999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|....
T Consensus        91 YYC~~~~   97 (112)
T d1ncwl1          91 YYCWQGT   97 (112)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            9996543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.8e-06  Score=41.58  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             ccCCccEEEEEEeeecCC--CeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          5 TAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +..|+.++|.|.+.|.-+  ..+.|.++|..+....  ......++.........+...+.+.|+|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            345788899999988633  3789999998874321  1122222322233333444555667999888753

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=1.8e-06  Score=44.25  Aligned_cols=68  Identities=18%  Similarity=0.371  Sum_probs=46.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Ee---------ccCCcEEE--EecCCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---------TLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~---------~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|...+. ...+.|++.  +.   .+         ....++..  ........|.|.++..+|++.|.|
T Consensus        10 ~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (115)
T d1ogad1          10 LSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLC   88 (115)
T ss_dssp             EEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcc
Confidence            567889999999987643 457899873  21   11         01123322  223346789999999999999999


Q ss_pred             EEecC
Q psy12132         67 QASNN   71 (126)
Q Consensus        67 ~~~~~   71 (126)
                      .+...
T Consensus        89 a~~~~   93 (115)
T d1ogad1          89 AGAGS   93 (115)
T ss_dssp             EEECT
T ss_pred             cccCC
Confidence            87643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.38  E-value=2.1e-06  Score=43.87  Aligned_cols=68  Identities=19%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             eeccCCccEEEEEEeeecC-----CCeeEEEEC--CE---Ee---------ccCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANP-----PAKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|++++|.|...+..     ...+.|++.  +.   .+         ....++.....+....|.|.+++..|++.
T Consensus        12 ~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   91 (113)
T d1n4xl_          12 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGI   91 (113)
T ss_dssp             EEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEE
Confidence            5678899999999975322     246889873  21   11         11245555555567899999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|....
T Consensus        92 YyCa~~~   98 (113)
T d1n4xl_          92 YYCFQGS   98 (113)
T ss_dssp             EEEEECS
T ss_pred             EEEEECC
Confidence            9996443

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.2e-07  Score=45.42  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=46.3

Q ss_pred             eeccCCccEEEEEEeeec--CCCeeEEEEC--C---EEec-c-----------CCcEEEEec--CCeEEEEEecCCCCCC
Q psy12132          3 SITAPDMRAEIICNVYAN--PPAKVEWFRD--G---TAIT-L-----------GGRIDMHVS--SEKHSLLVRHIKDTDF   61 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~--p~~~~~w~~~--~---~~~~-~-----------~~~~~~~~~--~~~~~l~i~~~~~~d~   61 (126)
                      ..+.+|++++|.|...+.  ....+.|++.  +   ..+. .           ..++.+..+  .....|.|.+++..|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            467789999999987532  3456889873  2   1111 0           124544432  2346899999999999


Q ss_pred             EEEEEEEecC
Q psy12132         62 GNYMCQASNN   71 (126)
Q Consensus        62 g~y~C~~~~~   71 (126)
                      |.|.|.+...
T Consensus        89 g~Y~Cav~~~   98 (113)
T d1smoa_          89 GLYQCVIYQP   98 (113)
T ss_dssp             EEEEEEECCT
T ss_pred             ceEEEEEECC
Confidence            9999987543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.37  E-value=1.1e-06  Score=45.01  Aligned_cols=70  Identities=11%  Similarity=0.263  Sum_probs=47.1

Q ss_pred             ceeccCCccEEEEEEeee-cCCCeeEEEEC--CEE----ec---------cCCcEEEEe--cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYA-NPPAKVEWFRD--GTA----IT---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~-~p~~~~~w~~~--~~~----~~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|++++|.|.... .....+.|++.  +..    +.         ...++....  ......|.|.+++..|+|.
T Consensus         8 ~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (115)
T d1fo0a_           8 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAV   87 (115)
T ss_dssp             EEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccccc
Confidence            367889999999998753 33456889973  211    11         012343332  2345689999999999999


Q ss_pred             EEEEEecC
Q psy12132         64 YMCQASNN   71 (126)
Q Consensus        64 y~C~~~~~   71 (126)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1fo0a_          88 YFCAMRGD   95 (115)
T ss_dssp             EEEEEECC
T ss_pred             ccceeecC
Confidence            99987643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.36  E-value=1.6e-06  Score=44.28  Aligned_cols=67  Identities=21%  Similarity=0.384  Sum_probs=46.8

Q ss_pred             eeccCCccEEEEEEeeecC-----CCeeEEEEC--CEE----ec--------cCCcEEEEecCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANP-----PAKVEWFRD--GTA----IT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p-----~~~~~w~~~--~~~----~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|++++|.|...+..     ...+.|++.  |..    +.        ...++..........|.|.+++..|++.
T Consensus        11 lsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAv   90 (112)
T d1mjul1          11 VPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGV   90 (112)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCce
Confidence            5577899999999875431     346889863  211    11        1235555555567789999999999999


Q ss_pred             EEEEEe
Q psy12132         64 YMCQAS   69 (126)
Q Consensus        64 y~C~~~   69 (126)
                      |.|...
T Consensus        91 YyCa~~   96 (112)
T d1mjul1          91 YYCLQH   96 (112)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=5.3e-06  Score=42.56  Aligned_cols=67  Identities=13%  Similarity=0.238  Sum_probs=44.3

Q ss_pred             eeccCCccEEEEEEeeecCCC---eeEEEEC--CEE---ec----cC-------C-cEEEEecCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYANPPA---KVEWFRD--GTA---IT----LG-------G-RIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~--~~~---~~----~~-------~-~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      +.+.+|+++.|.|.......+   .+.|++.  +..   +.    ..       . ............|.|.+++.+|.|
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG   88 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE
Confidence            567889999999998643333   4789973  221   10    00       1 112233344578999999999999


Q ss_pred             EEEEEEe
Q psy12132         63 NYMCQAS   69 (126)
Q Consensus        63 ~y~C~~~   69 (126)
                      .|.|.+.
T Consensus        89 ~YyCa~~   95 (117)
T d1dqta_          89 LYLCKVE   95 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999764

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.9e-06  Score=39.02  Aligned_cols=58  Identities=16%  Similarity=0.378  Sum_probs=40.4

Q ss_pred             cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ..|..+.|+|.......+  ...|.|+|..+.......     ....+.+..  .+++|.|.|.+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-----~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-----CceEEEEec--CCCCceEEEEEcC
Confidence            457789999999754433  578999999887653221     123566654  6789999998653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.33  E-value=2.2e-06  Score=43.81  Aligned_cols=68  Identities=24%  Similarity=0.450  Sum_probs=44.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE-E--e-ccC------CcE-EE--EecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT-A--I-TLG------GRI-DM--HVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~-~--~-~~~------~~~-~~--~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      +.+.+|++++|.|.... ....+.|++.  +. +  + ...      ... ..  ........|.|.+++.+|+|.|.|.
T Consensus        11 ~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (113)
T d1h5ba_          11 LSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCA   89 (113)
T ss_dssp             EEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEE
Confidence            56788999999999763 4567899883  21 1  1 100      111 11  1111345799999999999999998


Q ss_pred             EecC
Q psy12132         68 ASNN   71 (126)
Q Consensus        68 ~~~~   71 (126)
                      +...
T Consensus        90 ~~~~   93 (113)
T d1h5ba_          90 AEAS   93 (113)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            7654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.33  E-value=4.6e-07  Score=46.06  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=48.6

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      +.+.+|++++|.|.........+.|++.  +.   .+.         ...++..........|.|.+++.+|++.|.|.+
T Consensus         9 ~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   88 (108)
T d1nfde1           9 ASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLS   88 (108)
T ss_dssp             EEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEE
T ss_pred             eEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEe
Confidence            4577899999999875444456889873  22   111         123666655556678999999999999999976


Q ss_pred             ec
Q psy12132         69 SN   70 (126)
Q Consensus        69 ~~   70 (126)
                      ..
T Consensus        89 ~~   90 (108)
T d1nfde1          89 SY   90 (108)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.33  E-value=2.7e-06  Score=42.41  Aligned_cols=66  Identities=14%  Similarity=0.021  Sum_probs=43.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+..|++++|.|... .+...+.++|+|....... ...........+.|..+...|.|.|.|.....
T Consensus        16 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          16 TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRL-PAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEE-ECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             cccCCCeEEEEECCC-CCccEEEEEECCCccccEE-EccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            567899999999875 4566888999874322110 00112222345677778788999999976543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.6e-06  Score=44.00  Aligned_cols=69  Identities=10%  Similarity=0.164  Sum_probs=41.4

Q ss_pred             ccCCccEEEEEEeee-cCCC--eeEEEECCEEeccCCcE-EEEecC---CeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          5 TAPDMRAEIICNVYA-NPPA--KVEWFRDGTAITLGGRI-DMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~-~p~~--~~~w~~~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      +.+|+.++|.|.+.+ .|.+  .+.|++++..+...... .....+   ....|.+.....++...|+|.+.+..+
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcC
Confidence            467999999999864 5544  68899988765421100 000001   112466654444444489999987643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4e-06  Score=41.71  Aligned_cols=67  Identities=10%  Similarity=0.061  Sum_probs=41.5

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCc--EEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+..|++++|.|... .....+..+|++........  ......+..+.+.|..+...|.|+|+|.....
T Consensus        14 ~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            467899999999875 34557777787654221110  01111223457999999999999999987643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.31  E-value=7.1e-06  Score=40.92  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             ccCCccEEEEEEeeecC--CCeeEEEECCEEeccCCc---EEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          5 TAPDMRAEIICNVYANP--PAKVEWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p--~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +..|+..+|.|.+.+.-  ...+.|.++|..+..+..   .....++.........+...+.+.|+|.+....
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            34578889999998763  347999999877643211   111122222223333333445557999988753

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.31  E-value=5.3e-06  Score=42.10  Aligned_cols=67  Identities=16%  Similarity=0.379  Sum_probs=45.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE-E--ec---c---------CCcEE-EEecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT-A--IT---L---------GGRID-MHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~-~--~~---~---------~~~~~-~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|.... ....+.|++.  +. +  +.   .         ..++. .........|.|.++..+|+|.|
T Consensus        11 ~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   89 (110)
T d2aq2a1          11 KVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVY   89 (110)
T ss_dssp             EEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEE
Confidence            56789999999998753 3567999983  21 1  10   0         01222 22333457899999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|....
T Consensus        90 yCa~~~   95 (110)
T d2aq2a1          90 FCASGG   95 (110)
T ss_dssp             EEEEEE
T ss_pred             EEeeCC
Confidence            997654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.29  E-value=1.7e-06  Score=42.98  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=43.9

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcE-EEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+..|++++|.|... .....+.++|++..-...... .....+..+.+.|.++...|.|+|.|.....
T Consensus        12 ~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          12 LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             ccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            467899999999975 445677888866321100000 1111222357999999999999999986643

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.28  E-value=1.3e-05  Score=39.86  Aligned_cols=67  Identities=10%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             cCCccEEEEEEeeecC--CCeeEEEECCEEeccCC-c--EEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          6 APDMRAEIICNVYANP--PAKVEWFRDGTAITLGG-R--IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p--~~~~~w~~~~~~~~~~~-~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ..++.++|.|.+.+.-  ...++|.++|..+..+. .  .....++.........+...+...|+|.+....
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCC
Confidence            4467789999998763  44899999998774331 1  111122222222233344455557999988754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.27  E-value=4.1e-06  Score=42.77  Aligned_cols=67  Identities=15%  Similarity=0.393  Sum_probs=45.9

Q ss_pred             eeccCCccEEEEEEeeec---C---CCeeEEEEC--CE---Ee---------ccCCcEEEEecCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYAN---P---PAKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~---p---~~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      +.+.+|+++.|.|...+.   .   ...+.|++.  +.   .+         ....++..........|.|.+++..|+|
T Consensus        11 v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa   90 (113)
T d1q9ra1          11 LAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLA   90 (113)
T ss_dssp             EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCe
Confidence            567889999999986532   1   124889873  21   11         1123455544555678999999999999


Q ss_pred             EEEEEEe
Q psy12132         63 NYMCQAS   69 (126)
Q Consensus        63 ~y~C~~~   69 (126)
                      .|.|...
T Consensus        91 ~YyCA~~   97 (113)
T d1q9ra1          91 VYYCKQS   97 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEEeccc
Confidence            9999754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.7e-05  Score=39.44  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=40.0

Q ss_pred             cCCccEEEEEEeeecCC--CeeEEEECCEEeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          6 APDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..|+.++|.|.+.|.-+  ..+.|.++|..+..........  ++.........+...+.+.|+|.+...
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            35778999999987633  3789999998775432222222  222223333334445555799988765

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=6.9e-06  Score=39.18  Aligned_cols=70  Identities=21%  Similarity=0.311  Sum_probs=46.9

Q ss_pred             eccCCccEEEEEEee-ecCCCeeEEEE-CCEE---eccC-CcEE-EEecC--CeEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          4 ITAPDMRAEIICNVY-ANPPAKVEWFR-DGTA---ITLG-GRID-MHVSS--EKHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~-~~p~~~~~w~~-~~~~---~~~~-~~~~-~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .+..|+.+.|.|.+. -.-.|.++|-| ++..   +... +... +....  +...|-+..+...|.|.|+|.+.-..+
T Consensus        14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            467899999999985 22467899977 4432   2211 2222 22222  345788899999999999999875443

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.24  E-value=1.7e-05  Score=39.41  Aligned_cols=66  Identities=20%  Similarity=0.311  Sum_probs=38.4

Q ss_pred             CCccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++..+|.|.+.+..+  ..+.|.++|..+..+.   ......++.........+...+...|+|.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            3556789999987543  3799999998764321   1111222333344444555666678999887753

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1.7e-06  Score=44.13  Aligned_cols=70  Identities=19%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             ceeccCCccEEEEEEeeec---C---CCeeEEEECC----EEe-c----------cCCcEEEEec--CCeEEEEEecCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN---P---PAKVEWFRDG----TAI-T----------LGGRIDMHVS--SEKHSLLVRHIKD   58 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~---p---~~~~~w~~~~----~~~-~----------~~~~~~~~~~--~~~~~l~i~~~~~   58 (126)
                      .+.+.+|+++.|+|.....   +   ...+.|++..    ..+ .          ...++.+..+  ..+++|.|.+++.
T Consensus         9 ~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   88 (118)
T d1qfoa_           9 NVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKP   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCG
T ss_pred             EEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCCh
Confidence            4678899999999998521   1   1235576632    111 0          1234444322  2466899999999


Q ss_pred             CCCEEEEEEEecC
Q psy12132         59 TDFGNYMCQASNN   71 (126)
Q Consensus        59 ~d~g~y~C~~~~~   71 (126)
                      .|+|.|.|.+...
T Consensus        89 ~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          89 EDSGTYNFRFEIS  101 (118)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             hHCEEEEEEEEeC
Confidence            9999999988654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.5e-06  Score=39.99  Aligned_cols=66  Identities=12%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeeec-CC-CeeEEEECCEEeccC--CcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLG--GRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~--~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++.++|.|.+.+. |. ..+.|.++|..+...  .......++  .........+...+...|+|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            35678999999874 43 389999999887532  111222222  22233334444555567999988753

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.21  E-value=1.5e-05  Score=39.83  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=37.5

Q ss_pred             cCCccEEEEEEeeec-C-CCeeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          6 APDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..|+..+|.|.+.+. | ...+.|.++|..+..+.   ......++.........+...+...|+|.+...
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            356778899999876 3 33899999998765321   111111222222222223334445699988765

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.21  E-value=9.6e-06  Score=41.82  Aligned_cols=68  Identities=18%  Similarity=0.372  Sum_probs=47.5

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--C---EEec---------cCCcEEEEec--CCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--G---TAIT---------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~---~~~~---------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|...+..  ...+.|++.  +   +.+.         ...++....+  .....|.|.+++..|.|.|
T Consensus        11 v~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~Y   90 (120)
T d1hxma1          11 VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSY   90 (120)
T ss_dssp             EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCcee
Confidence            5678899999999987543  346899873  2   1111         1235554432  2357999999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|....
T Consensus        91 yCA~~~   96 (120)
T d1hxma1          91 YCACDT   96 (120)
T ss_dssp             EEEEEC
T ss_pred             ecCccc
Confidence            997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.4e-05  Score=38.50  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=40.2

Q ss_pred             cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ..|+.++|.|.+.|.-+.  .+.|.+++..+..........++  .........+...+...|+|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            347789999999885333  78999999876533222222222  12233333444455557999887653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.20  E-value=2.6e-06  Score=43.40  Aligned_cols=69  Identities=25%  Similarity=0.489  Sum_probs=47.1

Q ss_pred             ceeccCCccEEEEEEeeecC--CCeeEEEEC--CEE---e---------ccCCcEEEEe--cCCeEEEEEecCCCCCCEE
Q psy12132          2 HSITAPDMRAEIICNVYANP--PAKVEWFRD--GTA---I---------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   63 (126)
                      .+.+.+|++++|.|...+..  ...+.|++.  +..   +         ....++....  ......|.|.++..+|++.
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   88 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   88 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence            36688999999999986443  235889873  211   1         0123454433  2346799999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|....
T Consensus        89 YyCA~~~   95 (111)
T d1cd0a_          89 YYCQSYD   95 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9997553

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=7.3e-06  Score=41.77  Aligned_cols=67  Identities=19%  Similarity=0.418  Sum_probs=45.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec------------cCCcEEEE-ecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT------------LGGRIDMH-VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~------------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|...+ ....+.|++.  +..   +.            ...++... .......|.|.+++..|++.|
T Consensus         9 ~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (113)
T d2ntsp1           9 LIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALY   87 (113)
T ss_dssp             EEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceee
Confidence            56789999999998653 3567899872  211   10            01233222 222356899999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|.+..
T Consensus        88 yCA~~~   93 (113)
T d2ntsp1          88 LCASSL   93 (113)
T ss_dssp             EEEEES
T ss_pred             eeeeeC
Confidence            997654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1.4e-05  Score=40.56  Aligned_cols=70  Identities=14%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             ceeccCCccEEEEEEeeec--CCCeeEEEEC--CE----Eecc-----------CCcEEEEec--CCeEEEEEecCCCCC
Q psy12132          2 HSITAPDMRAEIICNVYAN--PPAKVEWFRD--GT----AITL-----------GGRIDMHVS--SEKHSLLVRHIKDTD   60 (126)
Q Consensus         2 ~~~~~~g~~~~l~C~~~~~--p~~~~~w~~~--~~----~~~~-----------~~~~~~~~~--~~~~~l~i~~~~~~d   60 (126)
                      ...+.+|++++|.|...+.  ....+.|++.  +.    .+..           .+++.+..+  .....|.|.+++..|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3567899999999998643  3456789874  21    1211           134555543  335689999999999


Q ss_pred             CEEEEEEEecC
Q psy12132         61 FGNYMCQASNN   71 (126)
Q Consensus        61 ~g~y~C~~~~~   71 (126)
                      .|.|.|.....
T Consensus        84 sa~YyCa~~~~   94 (110)
T d1u9ka_          84 SGLYRCVIYHP   94 (110)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEeCC
Confidence            99999987543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.18  E-value=3.4e-05  Score=38.30  Aligned_cols=66  Identities=15%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             cCCccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          6 APDMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..++..+|.|.+.+.-+  ..+.|.++|..+..+.   ......++.........+...+...|+|.+...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            45678899999987643  3789999998775321   111112222222222333344455799998865

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.17  E-value=2.9e-06  Score=43.14  Aligned_cols=68  Identities=16%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---------cCCcEEEEec--CCeEEEEEecCCCCCCEEEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMC   66 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C   66 (126)
                      +.+.+|++++|.|.........+.|++.  |.   .+.         ...++.....  .....|.|.++...|++.|.|
T Consensus        10 ~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   89 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYC   89 (110)
T ss_dssp             EEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccce
Confidence            5678899999999876555567999873  21   111         1123333222  234679999999999999999


Q ss_pred             EEec
Q psy12132         67 QASN   70 (126)
Q Consensus        67 ~~~~   70 (126)
                      .+..
T Consensus        90 A~~~   93 (110)
T d1ac6a_          90 ALSG   93 (110)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            7654

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.15  E-value=5.8e-06  Score=42.10  Aligned_cols=67  Identities=15%  Similarity=0.346  Sum_probs=45.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec-------------cCCcEEEEe-cCCeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT-------------LGGRIDMHV-SSEKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~-------------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|++++|.|... .....+.|++.  +.   .+.             ...++.... ......|.|.+++..|++.
T Consensus         9 ~~~~~G~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (112)
T d1kgce1           9 KVAKRGQDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAV   87 (112)
T ss_dssp             EEEETTCCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEE
Confidence            4678999999999864 34567899873  21   110             112333322 2234689999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (112)
T d1kgce1          88 YLCASSL   94 (112)
T ss_dssp             EEEEEES
T ss_pred             EEEeeeC
Confidence            9998754

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.6e-06  Score=42.27  Aligned_cols=68  Identities=18%  Similarity=0.338  Sum_probs=43.8

Q ss_pred             eeccCCccEEEEEEeeecCCC---eeEEEECC--EE---ec----cC------CcE--EEEecCCeEEEEEecCCCCCCE
Q psy12132          3 SITAPDMRAEIICNVYANPPA---KVEWFRDG--TA---IT----LG------GRI--DMHVSSEKHSLLVRHIKDTDFG   62 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~~--~~---~~----~~------~~~--~~~~~~~~~~l~i~~~~~~d~g   62 (126)
                      +.+.+|+.++|.|.......+   .+.|++..  ..   +.    ..      .+.  ..........|.|.+++..|.+
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG   88 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE
Confidence            567789999999998533333   48898742  11   10    00      011  1112233568999999999999


Q ss_pred             EEEEEEec
Q psy12132         63 NYMCQASN   70 (126)
Q Consensus        63 ~y~C~~~~   70 (126)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (118)
T d1i8lc_          89 LYICKVEL   96 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeEec
Confidence            99997654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.1e-05  Score=38.70  Aligned_cols=65  Identities=18%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEE-CCEEec-cCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFR-DGTAIT-LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +.+.+|+++.+.|.+. .|...+.-.+ .+..+. .+..+..-...   -+.|.+++..+.|.|.|.+...
T Consensus        15 V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          15 IHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEEC
Confidence            6788999999999997 6777765433 555443 33444444333   5999999999999999998765

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.13  E-value=2.7e-05  Score=40.07  Aligned_cols=68  Identities=16%  Similarity=0.389  Sum_probs=45.5

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--C---EEec-------------cCCcEEEEec--CCeEEEEEecCCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--G---TAIT-------------LGGRIDMHVS--SEKHSLLVRHIKDTD   60 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~---~~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d   60 (126)
                      +...+|+++.|.|.+.+..  ...+.|++.  +   +.+.             ...++....+  .....|.|.++..+|
T Consensus        11 v~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~D   90 (120)
T d1ypzf1          11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEED   90 (120)
T ss_dssp             EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccc
Confidence            4566899999999876432  346889873  2   1110             1124444432  235689999999999


Q ss_pred             CEEEEEEEec
Q psy12132         61 FGNYMCQASN   70 (126)
Q Consensus        61 ~g~y~C~~~~   70 (126)
                      ++.|.|....
T Consensus        91 sa~YyCA~~~  100 (120)
T d1ypzf1          91 EAIYYCSYGE  100 (120)
T ss_dssp             CSEEEEEECC
T ss_pred             ceeEEEEEcC
Confidence            9999997654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.11  E-value=8.6e-06  Score=41.37  Aligned_cols=67  Identities=19%  Similarity=0.370  Sum_probs=45.0

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec-------------cCCcEEEEecC-CeEEEEEecCCCCCCEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT-------------LGGRIDMHVSS-EKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~-------------~~~~~~~~~~~-~~~~l~i~~~~~~d~g~   63 (126)
                      +.+.+|++++|.|.... ....+.|++.  +.   .+.             ...++...... ....|.|.+++..|++.
T Consensus         9 ~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~   87 (111)
T d2esve1           9 SVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGV   87 (111)
T ss_dssp             EEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCce
Confidence            56788999999998543 3457899873  21   110             01234333322 34689999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (111)
T d2esve1          88 YFCASSQ   94 (111)
T ss_dssp             EEEEEES
T ss_pred             EEEeeeC
Confidence            9997543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=7.5e-06  Score=41.79  Aligned_cols=67  Identities=16%  Similarity=0.331  Sum_probs=44.5

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CE---Eec---c---------CCcEEEE-ecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---L---------GGRIDMH-VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~---~~~---~---------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|... .....+.|++.  +.   .+.   .         ..++... .......|.|.++...|++.|
T Consensus         9 ~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~Y   87 (114)
T d1ogae1           9 LFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFY   87 (114)
T ss_dssp             EEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEE
T ss_pred             EEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeE
Confidence            5678899999999975 44567999973  21   110   0         0111111 112345799999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|....
T Consensus        88 yCa~~~   93 (114)
T d1ogae1          88 LCASSS   93 (114)
T ss_dssp             EEEEES
T ss_pred             EEeecc
Confidence            997654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=1.5e-07  Score=46.88  Aligned_cols=72  Identities=21%  Similarity=0.475  Sum_probs=47.1

Q ss_pred             CceeccCCccEEEEEEeeecCCCeeEEEEC--CEEe---c---------cCCcEEEEe--cCCeEEEEEecCCCCCCEEE
Q psy12132          1 MHSITAPDMRAEIICNVYANPPAKVEWFRD--GTAI---T---------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         1 ~~~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~~---~---------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+.+|++++|.|.... ....+.|++.  +..+   .         ...++....  ......|.|.+++..|+|.|
T Consensus         1 qslsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           1 QALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             CCceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence            3567889999999998753 3457899873  2111   0         112333221  12235799999999999999


Q ss_pred             EEEEecCCc
Q psy12132         65 MCQASNNLG   73 (126)
Q Consensus        65 ~C~~~~~~~   73 (126)
                      .|.+....+
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            997765433

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.05  E-value=4.9e-05  Score=37.55  Aligned_cols=66  Identities=20%  Similarity=0.300  Sum_probs=36.5

Q ss_pred             CCccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++..+|.|.+.+.-+  ..+.|.++|..+..+.   ......++.........+...+...|+|.+....
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            3566789999987643  4799999997764321   1111222222333334444555567999887653

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=1.6e-05  Score=38.86  Aligned_cols=65  Identities=22%  Similarity=0.381  Sum_probs=37.2

Q ss_pred             CCccEEEEEEeeec-CC-CeeEEEECCEEeccCCcEEEEecC--CeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+..++|.|.+.|. |. ..+.|.++|..+... ......++  .........+...+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~-~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG-NCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCC-EEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc-CccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCC
Confidence            34578999999875 33 379999999876432 22222222  11222222223344457999887653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=1.6e-05  Score=40.45  Aligned_cols=67  Identities=16%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec------------cCCcEEEE-ecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT------------LGGRIDMH-VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~------------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|+++.|.|... .....+.|++.  +..   +.            ...++... .......|.|.++...|++.|
T Consensus        10 ~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   88 (113)
T d1j8he1          10 LVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMY   88 (113)
T ss_dssp             EEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccE
Confidence            5677899999999864 33567889873  211   10            01122222 222346899999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|.+..
T Consensus        89 yCa~~~   94 (113)
T d1j8he1          89 LCASSS   94 (113)
T ss_dssp             EEEEEC
T ss_pred             EeeEcc
Confidence            998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.03  E-value=4.8e-05  Score=39.27  Aligned_cols=67  Identities=19%  Similarity=0.457  Sum_probs=45.9

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CE---Eec--------------cCCcEEEEec--CCeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GT---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~~   59 (126)
                      +...+|+++.|.|.+.+..  ...+.|++.  ++   .+.              ...++....+  .....|.|.++...
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~   90 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc
Confidence            4566799999999987643  346889873  21   110              1135655432  23467999999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|...
T Consensus        91 Dsa~YyCA~~  100 (123)
T d1hxmb1          91 DIATYYCALW  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCcEEEEeee
Confidence            9999999754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.02  E-value=0.0001  Score=36.79  Aligned_cols=68  Identities=10%  Similarity=0.138  Sum_probs=39.7

Q ss_pred             ccCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEe--cCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          5 TAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +..|+..+|.|.+.+.-+.  .+.|.+++..+..........  ++.........+...+...|+|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            3457888999999875433  789999998764332222222  2211121222233444456999988764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=2.6e-05  Score=37.96  Aligned_cols=63  Identities=16%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcE---EEEecCC---eEEEEEecCCCCCCEEEEEEEecC
Q psy12132          6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI---DMHVSSE---KHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~---~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      ..++.+.|.|.+.+..+.  .++|.++|..+..+...   ....++.   .+.|.+..   .+...|+|.+...
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEEC
Confidence            346689999999876443  68999999877543211   1112222   12344443   3333599988764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=1.5e-05  Score=40.50  Aligned_cols=67  Identities=15%  Similarity=0.307  Sum_probs=43.7

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---e---cc---------CCcEEEE-ecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---I---TL---------GGRIDMH-VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~---~~---------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|... .....+.|++.  +..   +   ..         ..++... .......|.|.++..+|++.|
T Consensus         9 ~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavY   87 (112)
T d2bnub1           9 QVLKTGQSMTLQCAQD-MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVY   87 (112)
T ss_dssp             EEEETTCCEEEEEEES-SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEE-CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEE
Confidence            4577899999999875 34567999873  211   1   00         0111111 222245799999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|....
T Consensus        88 yCA~~~   93 (112)
T d2bnub1          88 FCASSY   93 (112)
T ss_dssp             EEEEEC
T ss_pred             EEeecC
Confidence            997653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.2e-06  Score=43.45  Aligned_cols=63  Identities=11%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             eccCCccEEEEEEeeecCCCeeEEEECCEEecc-CCcEEEEecCCeEEEEEecCCCCCCEEEEEEEe
Q psy12132          4 ITAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      .+..|++++|.|... .+...+..+|++..... ...  ....+..+.+.|.++...|.|.|.|...
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          14 VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI--PQELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS--CHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc--cCCCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            467899999999964 44557777887643210 000  0011123479999999999999999864

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=8.5e-06  Score=41.45  Aligned_cols=68  Identities=15%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--E---Eec---cC---------CcEEEE-ecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---LG---------GRIDMH-VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~~---~~---------~~~~~~-~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|... .....+.|++..  .   .+.   ..         .++... .......|.|..++..|++.|
T Consensus         8 ~~~~~G~svtL~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   86 (112)
T d2cdeb1           8 LVIGTGKKITLECSQT-MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQY   86 (112)
T ss_dssp             EEEETTCCBCCEEEET-TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEE
T ss_pred             EEECCCCCEEEEEEEe-CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccE
Confidence            5678899999999864 335678999742  1   110   00         111111 122345799999999999999


Q ss_pred             EEEEecC
Q psy12132         65 MCQASNN   71 (126)
Q Consensus        65 ~C~~~~~   71 (126)
                      .|.+...
T Consensus        87 yCA~~~~   93 (112)
T d2cdeb1          87 LCASSEN   93 (112)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9976643

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.2e-05  Score=37.65  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEeccCCcEE---EEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID---MHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      +..+.|.|.+.|..+.  .++|.++|..+.......   ...++.........+...+...|+|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            4578999999876544  689999998765432111   111111222222233334445699988865

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.90  E-value=1.9e-05  Score=40.24  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEECC--E---Ee---c---------cCCcEEEE-ecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRDG--T---AI---T---------LGGRIDMH-VSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~~--~---~~---~---------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|++++|.|.... ....+.|++..  .   .+   .         ...++... .......|.|.+++..|++.|
T Consensus        11 ~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   89 (113)
T d1nfdb1          11 IIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMY   89 (113)
T ss_dssp             EEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeE
Confidence            56778999999998643 34578998742  1   11   0         01222221 222346899999999999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|.+..
T Consensus        90 yCa~~~   95 (113)
T d1nfdb1          90 FCASSL   95 (113)
T ss_dssp             CEEEES
T ss_pred             EEEeec
Confidence            997654

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00021  Score=36.43  Aligned_cols=67  Identities=10%  Similarity=0.170  Sum_probs=40.9

Q ss_pred             eeccCCccEEEEEEeeecCCC--ee-EEEEC--CE--Eec------------cCCcEEEE--ecCCeEEEEEecCCCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KV-EWFRD--GT--AIT------------LGGRIDMH--VSSEKHSLLVRHIKDTDF   61 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~-~w~~~--~~--~~~------------~~~~~~~~--~~~~~~~l~i~~~~~~d~   61 (126)
                      ..+..|+.++|.|...+....  .. .|++.  +.  .+.            ...++...  .......|.|.+++..|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            456679999999998644333  23 34442  11  110            11223322  233456899999999999


Q ss_pred             EEEEEEEe
Q psy12132         62 GNYMCQAS   69 (126)
Q Consensus        62 g~y~C~~~   69 (126)
                      +.|.|.+.
T Consensus        90 avYyCa~~   97 (118)
T d1yjdc1          90 DIYFCKIE   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.87  E-value=8.5e-05  Score=37.60  Aligned_cols=67  Identities=9%  Similarity=0.171  Sum_probs=43.3

Q ss_pred             eeccCCccEEEEEEeeecCCCeeEEEEC--CEE---ec----cC---------CcEEEEecCCeEEEEEecCCCCCCEEE
Q psy12132          3 SITAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT----LG---------GRIDMHVSSEKHSLLVRHIKDTDFGNY   64 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~~~~w~~~--~~~---~~----~~---------~~~~~~~~~~~~~l~i~~~~~~d~g~y   64 (126)
                      +.+.+|+++.|.|.....-...+.|++.  |..   +.    .+         .++.... .....|.|...+..|++.|
T Consensus        11 ~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~l~l~~~~~~dsa~Y   89 (112)
T d1fo0b_          11 RLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTELRLQVANMSQGRTL   89 (112)
T ss_dssp             EECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-EETTEEEEEEESCCSCEEE
T ss_pred             EEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc-ccccEEEEecCCccCCccE
Confidence            5678899999999986555567899984  221   11    00         1222111 1123688888889999999


Q ss_pred             EEEEec
Q psy12132         65 MCQASN   70 (126)
Q Consensus        65 ~C~~~~   70 (126)
                      .|.+..
T Consensus        90 ~Ca~~~   95 (112)
T d1fo0b_          90 YCTCSA   95 (112)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            998653

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.83  E-value=0.00011  Score=36.02  Aligned_cols=65  Identities=11%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccCCcE----EEEecCCeEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI----DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +..+.|.|.+.+.-+  ..++|.++|..+......    ....++.........+...+...|+|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            456899999987533  379999999876543211    11112222222223333444456999988653

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.82  E-value=8.6e-05  Score=35.81  Aligned_cols=62  Identities=11%  Similarity=0.248  Sum_probs=39.2

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.++|.|.+.+.-+.  .+.|.++|..+..........++....+.+..+...|  .|+|.+...
T Consensus        13 ~~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~--~yTC~V~H~   76 (86)
T d1hxma2          13 KNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSN--SVTCSVQHD   76 (86)
T ss_dssp             EETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTT--TCEEEEEET
T ss_pred             CCCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCC--EEEEEEEEC
Confidence            3457899999876444  6889999877654333333334444445555555444  599998865

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.79  E-value=0.00019  Score=36.61  Aligned_cols=65  Identities=25%  Similarity=0.526  Sum_probs=45.5

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec----------cCCcEEEEecCC--eEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT----------LGGRIDMHVSSE--KHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~----------~~~~~~~~~~~~--~~~l~i~~~~~~d~   61 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.          ...++.+..+..  ...|.|.+++.+|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            4678999999999987643  35778763  111      11          124677665432  35799999999999


Q ss_pred             EEEEEEE
Q psy12132         62 GNYMCQA   68 (126)
Q Consensus        62 g~y~C~~   68 (126)
                      ..|.|-.
T Consensus        91 A~YYCAr   97 (120)
T d1dn0b1          91 AVYYCAR   97 (120)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999953

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=9.4e-05  Score=36.95  Aligned_cols=66  Identities=15%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             CccEEEEEEeeec-CCC-eeEEEECCEEeccCCcEE--EEecCCe---EEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          8 DMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRID--MHVSSEK---HSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         8 g~~~~l~C~~~~~-p~~-~~~w~~~~~~~~~~~~~~--~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      +.++.|.|.+.+. |.. .+.|.++|..+.......  ...++..   +.|.+..-.-.....|+|.+.....
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            4568899999874 433 689999998865432111  1122211   2344444322224469999987643

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.78  E-value=0.00018  Score=36.81  Aligned_cols=67  Identities=19%  Similarity=0.481  Sum_probs=45.5

Q ss_pred             eeccCCccEEEEEEeeecC----CCeeEEEEC--CEE---ec-------------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          3 SITAPDMRAEIICNVYANP----PAKVEWFRD--GTA---IT-------------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p----~~~~~w~~~--~~~---~~-------------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      ..+.+|+++.|.|.+.|..    ...+.|++.  ++.   +.             ...++.+..+.  ....|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            3567899999999987543    235789873  211   10             12466655432  246799999999


Q ss_pred             CCCEEEEEEEe
Q psy12132         59 TDFGNYMCQAS   69 (126)
Q Consensus        59 ~d~g~y~C~~~   69 (126)
                      +|.+.|.|...
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=0.00019  Score=36.44  Aligned_cols=67  Identities=22%  Similarity=0.511  Sum_probs=46.2

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec----------cCCcEEEEecCC--eEEEEEecCCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT----------LGGRIDMHVSSE--KHSLLVRHIKDTD   60 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~----------~~~~~~~~~~~~--~~~l~i~~~~~~d   60 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |+.      +.          ...++.+..+..  ...|.+.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            35688999999999987643  35778763  111      11          124666665432  3579999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      ...|.|-..
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.77  E-value=5.4e-05  Score=37.33  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             CccEEEEEEeeec-CCC-eeEEEECCEEec
Q psy12132          8 DMRAEIICNVYAN-PPA-KVEWFRDGTAIT   35 (126)
Q Consensus         8 g~~~~l~C~~~~~-p~~-~~~w~~~~~~~~   35 (126)
                      ++.+.|.|.+.|. |.. .+.|.+++..+.
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~   45 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQ   45 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECT
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCC
Confidence            4579999999875 433 789999887654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00015  Score=36.02  Aligned_cols=65  Identities=22%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccCC---cEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGG---RIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~---~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.++|.|.+.+.-+  ..|.|.++|..+..+.   ......++..   +.|.+..-.-.....|+|.+....
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            457899999976633  3799999998764321   1111122222   234454333233457999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.74  E-value=0.00044  Score=35.25  Aligned_cols=67  Identities=19%  Similarity=0.413  Sum_probs=46.3

Q ss_pred             eccCCccEEEEEEeeecCCC--eeEEEECC--E--E----ec----------cCCcEEEEecCC--eEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPPA--KVEWFRDG--T--A----IT----------LGGRIDMHVSSE--KHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~--~~~w~~~~--~--~----~~----------~~~~~~~~~~~~--~~~l~i~~~~~~d~   61 (126)
                      .+.+|+++.|.|.+.|....  .+.|++.-  +  +    +.          ...++.+..+..  ...|.|.+++.+|.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            56789999999999875433  57787641  1  1    11          124676665432  35799999999999


Q ss_pred             EEEEEEEec
Q psy12132         62 GNYMCQASN   70 (126)
Q Consensus        62 g~y~C~~~~   70 (126)
                      ..|.|....
T Consensus        90 A~YYCAr~~   98 (119)
T d1kxvc_          90 AMYYCKPSL   98 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeecc
Confidence            999996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.73  E-value=0.00024  Score=36.07  Aligned_cols=67  Identities=16%  Similarity=0.377  Sum_probs=45.8

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CE------Eec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GT------AIT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~------~~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.  ++      .|.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            4578899999999998754  335777763  11      011           12466665543  2357899999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999999644

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.72  E-value=0.00046  Score=34.98  Aligned_cols=68  Identities=24%  Similarity=0.473  Sum_probs=46.5

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.          ...++.+..+.  ....|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            35678999999999987543  35778763  211      11          12466665433  24579999999999


Q ss_pred             CEEEEEEEec
Q psy12132         61 FGNYMCQASN   70 (126)
Q Consensus        61 ~g~y~C~~~~   70 (126)
                      .+.|.|....
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999997543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=0.00042  Score=35.14  Aligned_cols=67  Identities=16%  Similarity=0.396  Sum_probs=45.9

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  ++.      +.           ...++.+..+..  ...|.+.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            356789999999999876433  5778763  110      11           124666665432  357899999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.71  E-value=0.00046  Score=35.02  Aligned_cols=68  Identities=18%  Similarity=0.475  Sum_probs=46.6

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.  ++.      |.           ...|+.+..+..  ...|.|.+++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            3567899999999998753  235677763  110      11           224666665432  357999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |...|.|....
T Consensus        90 DtAvYYCA~~~  100 (117)
T d1iqdb1          90 DTAVYYCAVPD  100 (117)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeEcC
Confidence            99999997544

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00014  Score=36.20  Aligned_cols=65  Identities=15%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccCCc---EEEEecCCeEEEEEecCCCCC---CEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTD---FGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d---~g~y~C~~~~~~   72 (126)
                      ++.+.|.|.+.+..+  ..+.|.++|..+..+..   .....++.........+...+   ...|+|.+....
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            567899999987433  37999999987653311   111122222223333333332   336999988764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=2.5e-05  Score=38.96  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             CCccEEEEEEeeec-C-CCeeEEEECCEEeccCCcEEEEecCC---eEEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .++.+.|.|.+.+. | ...|.|.+++.............++.   .+.|.+..-.- +.+.|+|.+.....
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCC
Confidence            46789999999874 3 23799987764321110011122222   23555554433 35679999987543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.70  E-value=0.0004  Score=35.27  Aligned_cols=67  Identities=16%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.           ...|+.+..+.  ....|.|.+++.+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            45788999999999987543  35778763  211      11           12466665443  2357999999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1um5h1          89 DSAVYYCARS   98 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999644

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.69  E-value=0.00032  Score=35.13  Aligned_cols=67  Identities=19%  Similarity=0.404  Sum_probs=45.8

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CE--E----ec-------------cCCcEEEEecC--CeEEEEEecCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GT--A----IT-------------LGGRIDMHVSS--EKHSLLVRHIK   57 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~--~----~~-------------~~~~~~~~~~~--~~~~l~i~~~~   57 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++  +    +.             ...++++..+.  ....|.+.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            45788999999999987543  35777652  21  1    11             11366666543  23578999999


Q ss_pred             CCCCEEEEEEEe
Q psy12132         58 DTDFGNYMCQAS   69 (126)
Q Consensus        58 ~~d~g~y~C~~~   69 (126)
                      .+|.+.|.|-..
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=0.00035  Score=35.70  Aligned_cols=67  Identities=13%  Similarity=0.387  Sum_probs=45.4

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.+..  ...+.|++.  |+.      +.           ...|+.+..+.  ....|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            3567899999999998654  335778763  211      11           12466655433  2357999999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|...
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=0.00036  Score=35.37  Aligned_cols=66  Identities=15%  Similarity=0.433  Sum_probs=44.4

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  ++.      +.           ...++.+..+.  ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            3567899999999988653  335778763  211      11           11356555432  2356999999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |...|.|-.
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999954

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.68  E-value=0.00031  Score=35.70  Aligned_cols=66  Identities=18%  Similarity=0.484  Sum_probs=44.8

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CE--E----ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GT--A----IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~--~----~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++  +    +.           ...|+.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            35688999999999987542  35777663  11  0    11           12466665443  2357899999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |.+.|.|-.
T Consensus        90 DtAvYYCAr   98 (118)
T d1nlbh1          90 DTATYFCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999953

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.67  E-value=0.00051  Score=34.97  Aligned_cols=67  Identities=19%  Similarity=0.464  Sum_probs=45.9

Q ss_pred             eeccCCccEEEEEEeeecCCC---eeEEEEC--CEEe------c----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA---KVEWFRD--GTAI------T----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~---~~~w~~~--~~~~------~----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....   .+.|++.  ++.+      .          ...|+.+..+.  ....|.+.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            357789999999999986542   4678652  2111      1          12466666543  2357999999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|-..
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00033  Score=35.58  Aligned_cols=66  Identities=17%  Similarity=0.419  Sum_probs=44.9

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  ++.      +.           ...|+.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            457889999999999876533  5777763  111      11           12466665443  2346899999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |...|.|-.
T Consensus        90 DTAvYYCAr   98 (118)
T d2jelh1          90 DSAIYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeEEE
Confidence            999999953

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.65  E-value=0.00033  Score=35.52  Aligned_cols=66  Identities=24%  Similarity=0.461  Sum_probs=45.1

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec----------cCCcEEEEecC--CeEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT----------LGGRIDMHVSS--EKHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~----------~~~~~~~~~~~--~~~~l~i~~~~~~d~   61 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  |+.      +.          ...++.+..+.  ....|.+.+++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            5678999999999987543  35778763  111      11          11356665433  235799999999999


Q ss_pred             EEEEEEEe
Q psy12132         62 GNYMCQAS   69 (126)
Q Consensus        62 g~y~C~~~   69 (126)
                      ..|.|-..
T Consensus        91 AvYYCAr~   98 (116)
T d1a2yb_          91 ARYYCARE   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999744

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.65  E-value=0.00037  Score=35.19  Aligned_cols=65  Identities=15%  Similarity=0.359  Sum_probs=44.4

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  ..+.|++.  |+-      +.           ...++.+..+..  ...|.|.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            5678999999999987543  35677763  110      11           124666655432  3569999999999


Q ss_pred             CEEEEEEE
Q psy12132         61 FGNYMCQA   68 (126)
Q Consensus        61 ~g~y~C~~   68 (126)
                      ...|.|-.
T Consensus        91 tAvYYCA~   98 (114)
T d1indh1          91 TALYFCAS   98 (114)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEECC
Confidence            99999963

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.62  E-value=0.00078  Score=34.92  Aligned_cols=67  Identities=19%  Similarity=0.428  Sum_probs=46.1

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|..  ...+.|++.  |+.      |.           ...|+.+..+..  ...|.+.+++.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            567899999999998754  335778753  110      11           124666665442  3579999999999


Q ss_pred             CEEEEEEEec
Q psy12132         61 FGNYMCQASN   70 (126)
Q Consensus        61 ~g~y~C~~~~   70 (126)
                      ...|.|....
T Consensus        91 TAvYYCAr~~  100 (135)
T d1ieha_          91 TAVYYCAKYS  100 (135)
T ss_dssp             CEEEEEEEBS
T ss_pred             ceeeEEEEec
Confidence            9999997543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.62  E-value=0.00059  Score=34.64  Aligned_cols=66  Identities=12%  Similarity=0.364  Sum_probs=44.1

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  ++-      +.           ...++.+..+.  ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~e   89 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCC
Confidence            4567899999999998654  235667652  211      11           11355555443  2357899999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |.+.|.|..
T Consensus        90 DtAvYYCAr   98 (117)
T d1mfah1          90 DSAVYYCTR   98 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999964

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.61  E-value=0.00053  Score=35.20  Aligned_cols=66  Identities=21%  Similarity=0.425  Sum_probs=45.4

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++.      |.           ...|+.+..+.  ....|.+.++..+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            5678999999999987553  35778763  110      11           12456665443  24578999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      .+.|.|...
T Consensus        90 tAvYYCAr~   98 (124)
T d1zvya1          90 TAIYTCGAT   98 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00053  Score=34.18  Aligned_cols=71  Identities=8%  Similarity=0.091  Sum_probs=39.2

Q ss_pred             CccEEEEEEeeec-CC-CeeEEEECCEEeccCC--cEEEEecCCeE---EEEEecCCC--CCCEEEEEEEecCCceeEEE
Q psy12132          8 DMRAEIICNVYAN-PP-AKVEWFRDGTAITLGG--RIDMHVSSEKH---SLLVRHIKD--TDFGNYMCQASNNLGSSQQF   78 (126)
Q Consensus         8 g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~--~~~~~~~~~~~---~l~i~~~~~--~d~g~y~C~~~~~~~~~~~~   78 (126)
                      .+.+.|.|.+.+. |. ..+.|.+++..+....  ......++...   .|.+...+-  .....|+|.+....+.....
T Consensus        21 ~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~  100 (105)
T d1dn0b2          21 TSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKN  100 (105)
T ss_dssp             CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEE
T ss_pred             CCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEeE
Confidence            5678999999875 33 4799998876543211  00112333222   344433321  12247999999876544433

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.60  E-value=0.00038  Score=35.63  Aligned_cols=68  Identities=18%  Similarity=0.366  Sum_probs=45.7

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++.      |.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            35678999999999987543  35678763  110      11           12456665433  2356999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999996543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=0.00055  Score=34.93  Aligned_cols=66  Identities=17%  Similarity=0.448  Sum_probs=44.6

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|..  .-.+.|++.  |+.      +.           ...|+.+..+.  ....|.|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            567899999999987643  335788763  211      11           11356665433  23569999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      .+.|.|-..
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999644

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=0.00046  Score=35.14  Aligned_cols=66  Identities=12%  Similarity=0.356  Sum_probs=44.9

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ecc-----------CCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------ITL-----------GGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~~-----------~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++.      +..           ..++.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            35678999999999987643  35778763  111      111           2366665433  2357999999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |.+.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999954

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.58  E-value=0.00051  Score=35.35  Aligned_cols=67  Identities=10%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            35688999999999986542  34667652  111      11           12466665443  2356889999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|-..
T Consensus        90 DtAvYYCAR~   99 (125)
T d1rihh1          90 DSAVYYCARE   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999644

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.57  E-value=0.00048  Score=35.07  Aligned_cols=66  Identities=21%  Similarity=0.497  Sum_probs=45.2

Q ss_pred             eccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|....  .+.|++.  ++.      +.           ...++.+..+.  ....|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            46789999999999875433  5778653  110      11           12466665543  23578999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1rz7h1          91 TAVYYCAAD   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00094  Score=34.30  Aligned_cols=66  Identities=17%  Similarity=0.396  Sum_probs=45.5

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  ++.      |.           ...|+.+..+.  ....|.+.+++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~e   88 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSE   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCC
Confidence            457789999999999876433  5677652  111      11           12566665443  3457999999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |...|.|-.
T Consensus        89 DTAvYYCAr   97 (126)
T d1lmka1          89 DSAVYYCAR   97 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999953

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.57  E-value=0.00083  Score=34.11  Aligned_cols=67  Identities=13%  Similarity=0.395  Sum_probs=44.6

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.  |+.      +.           ...++.+..+..  ...|.+.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            4577899999999998754  235677652  111      11           113555554332  357889999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|-..
T Consensus        90 DtAvYYCAr~   99 (118)
T d1ct8b1          90 DSAIYYCARY   99 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999643

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.57  E-value=0.00091  Score=34.15  Aligned_cols=68  Identities=16%  Similarity=0.425  Sum_probs=46.3

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |+.      +.           ...|+.+..+..  ...|.+.+++.+
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            35788999999999987543  35778763  110      11           124666655432  346899999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |.+.|.|....
T Consensus        91 DtA~YYCAr~~  101 (122)
T d1vgeh1          91 DTAVYYCARDP  101 (122)
T ss_dssp             GCEEEEEEEET
T ss_pred             cceEEEEeecC
Confidence            99999996543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00081  Score=34.58  Aligned_cols=66  Identities=18%  Similarity=0.457  Sum_probs=45.0

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.           ...++.+..+.  ....|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            4678999999999987543  35777752  111      11           12466666543  23578999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      .+.|.|...
T Consensus        91 TavYYCAR~   99 (127)
T d2fx7h1          91 TAVYYCARE   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=0.00082  Score=33.35  Aligned_cols=64  Identities=14%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             CCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCCCEE
Q psy12132          7 PDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTDFGN   63 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d~g~   63 (126)
                      +|+++.|.|.+.|...  -.+.|++.  |+.      |.           ...|+.+..+.  ....|.+.+++.+|...
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            5889999999987543  35778753  211      11           12466665443  23479999999999999


Q ss_pred             EEEEEec
Q psy12132         64 YMCQASN   70 (126)
Q Consensus        64 y~C~~~~   70 (126)
                      |.|-...
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9996543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.55  E-value=0.00095  Score=33.89  Aligned_cols=68  Identities=16%  Similarity=0.342  Sum_probs=45.9

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      -.+.+|+++.|.|.+.|....  .+.|++.  |+.      +.           ...++.+..+..  ...|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            357789999999999875433  5677653  110      11           124666655432  346899999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (118)
T d2fbjh1          90 DTALYYCARLH  100 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEeeEec
Confidence            99999997544

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=6.8e-05  Score=37.36  Aligned_cols=66  Identities=12%  Similarity=0.083  Sum_probs=34.6

Q ss_pred             CCccEEEEEEeeecCC--CeeEEEECCEEeccCCcEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          7 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      .++.+.|.|.+.+.-+  ..|.|..++.............++..   +.|.+..-.- +.+.|+|.+.....
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPAS   89 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCC
Confidence            3578999999987533  37999766533211000011222221   2455544432 24579999987644

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.54  E-value=0.00069  Score=34.26  Aligned_cols=66  Identities=14%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |+.      |.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCC
Confidence            45778999999999987543  35677652  110      11           12366665443  2357889999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |.+.|.|-.
T Consensus        90 DtAvYYCAr   98 (116)
T d1mjuh1          90 DSAVYYCAN   98 (116)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEcc
Confidence            999999964

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.54  E-value=0.00054  Score=35.59  Aligned_cols=67  Identities=19%  Similarity=0.472  Sum_probs=45.3

Q ss_pred             eccCCccEEEEEEeeecCC----CeeEEEEC--CEE---e---c----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP----AKVEWFRD--GTA---I---T----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~----~~~~w~~~--~~~---~---~----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      .+.+|+++.|.|.+.|...    ..+.|++.  ++.   +   .          ...|+++..+.  ....|.|.+++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            4678999999999886432    25778763  111   1   0          12466655433  2357999999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |...|.|-...
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999997554

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.53  E-value=0.00072  Score=34.49  Aligned_cols=66  Identities=20%  Similarity=0.417  Sum_probs=44.9

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|..  ...+.|++.  ++.      +.           ...++.+..+..  ...|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence            567899999999998654  335778763  110      11           113666665432  3568999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      .+.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d2p49b1          91 TATYYCAAG   99 (121)
T ss_dssp             CEEEEEEES
T ss_pred             eeEEeeecc
Confidence            999999653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.53  E-value=0.00038  Score=35.95  Aligned_cols=66  Identities=18%  Similarity=0.429  Sum_probs=45.1

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEECC--E---Ee---c----------------cCCcEEEEecC--CeEEEEEec
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRDG--T---AI---T----------------LGGRIDMHVSS--EKHSLLVRH   55 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~~--~---~~---~----------------~~~~~~~~~~~--~~~~l~i~~   55 (126)
                      .+.+|+++.|.|.+.|..  .-.+.|++..  +   -+   .                ...++.+..+.  ....|.|.+
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            467899999999998754  3357787631  1   01   0                11356655432  345799999


Q ss_pred             CCCCCCEEEEEEEe
Q psy12132         56 IKDTDFGNYMCQAS   69 (126)
Q Consensus        56 ~~~~d~g~y~C~~~   69 (126)
                      ++.+|...|.|-..
T Consensus        91 l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          91 LKPEDTAVYYCAAK  104 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccceeEEEEEEE
Confidence            99999999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.52  E-value=0.00039  Score=35.50  Aligned_cols=67  Identities=18%  Similarity=0.357  Sum_probs=45.6

Q ss_pred             eeccCCccEEEEEEeeecCC----CeeEEEEC--CEE------ecc----------CCcEEEEecCC--eEEEEEecCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP----AKVEWFRD--GTA------ITL----------GGRIDMHVSSE--KHSLLVRHIKD   58 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~----~~~~w~~~--~~~------~~~----------~~~~~~~~~~~--~~~l~i~~~~~   58 (126)
                      ..+.+|+++.|.|.+.|...    -.+.|++.  |+.      +..          ..|+.+..+..  ...|.|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            35778999999999987532    24678763  211      111          14666655432  35799999999


Q ss_pred             CCCEEEEEEEe
Q psy12132         59 TDFGNYMCQAS   69 (126)
Q Consensus        59 ~d~g~y~C~~~   69 (126)
                      +|.+.|.|...
T Consensus        90 eDtAvYYCAr~  100 (120)
T d1ai1h1          90 EDTAMYYCSRE  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeEEEEEec
Confidence            99999999643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00096  Score=34.07  Aligned_cols=66  Identities=18%  Similarity=0.465  Sum_probs=45.1

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|..  .-.+.|++.  |+.      |.           ...|+.+..+.  ....|.|.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            567899999999998653  234677652  111      11           12466666543  24579999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      ...|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d1ol0a_          91 TAVYYCARE   99 (121)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.52  E-value=0.00071  Score=34.86  Aligned_cols=67  Identities=21%  Similarity=0.500  Sum_probs=45.4

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--C--------------EEe-c--cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--G--------------TAI-T--LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~--------------~~~-~--~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  +              ... .  ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            357889999999999875433  4667542  1              110 0  12466666543  2457889999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|...
T Consensus        90 DTA~YYCAr~   99 (128)
T d2nxyd1          90 DTAVYFCAGV   99 (128)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEE
Confidence            9999999754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.00075  Score=34.49  Aligned_cols=67  Identities=13%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  ++.      +.           ...++.+..+.  ....|.|.+++.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            3577899999999987643  335778763  211      11           11356555432  2356999999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.52  E-value=0.00094  Score=33.90  Aligned_cols=66  Identities=17%  Similarity=0.357  Sum_probs=45.0

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec----------cCCcEEEEecCC--eEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT----------LGGRIDMHVSSE--KHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~----------~~~~~~~~~~~~--~~~l~i~~~~~~d~   61 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.          ...++.+..+..  ...|.+.+++.+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            4678999999999987643  35778763  111      11          113566654432  35789999999999


Q ss_pred             EEEEEEEe
Q psy12132         62 GNYMCQAS   69 (126)
Q Consensus        62 g~y~C~~~   69 (126)
                      +.|.|-..
T Consensus        91 A~YyCAr~   98 (118)
T d1lo4h1          91 AIYYCARG   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeccc
Confidence            99999644

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.51  E-value=0.00044  Score=35.58  Aligned_cols=67  Identities=21%  Similarity=0.442  Sum_probs=44.5

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ecc-----------CCcEEEEecCC--eEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------ITL-----------GGRIDMHVSSE--KHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~~-----------~~~~~~~~~~~--~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++.      |..           ..++.+..+..  ...|.|.+++.+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            5678999999999986543  35778763  111      111           13666655432  3469999999999


Q ss_pred             CEEEEEEEec
Q psy12132         61 FGNYMCQASN   70 (126)
Q Consensus        61 ~g~y~C~~~~   70 (126)
                      ...|.|....
T Consensus        90 TAvYYCAr~~   99 (126)
T d1rjca1          90 TAMYYCAADT   99 (126)
T ss_dssp             CEEEEEEECC
T ss_pred             CceeEEEeec
Confidence            9999997543

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.50  E-value=0.00014  Score=35.98  Aligned_cols=63  Identities=11%  Similarity=0.118  Sum_probs=34.2

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEecc----CC---cEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAITL----GG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~----~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ...+.|.|.+.+.-+.  .+.|.+++..+..    ..   ...-..++.........+...+...|+|.+..
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H   85 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKG   85 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEE
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEe
Confidence            3478999999876544  6899998754321    10   11111222222222333344444568998764

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.50  E-value=0.00038  Score=34.86  Aligned_cols=67  Identities=12%  Similarity=0.221  Sum_probs=37.4

Q ss_pred             cCCccEEEEEEeeecCCC--eeEEEECCEEeccCCcE--EEEecCCeEEEEEecCCCCCCE-EEEEEEecCC
Q psy12132          6 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI--DMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~   72 (126)
                      ..+..+.|.|.+.+.-+.  .+.|.++|..+......  ....++.........+...+.| .|+|.+....
T Consensus        22 ~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s   93 (107)
T d1hxmb2          22 KLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHEN   93 (107)
T ss_dssp             GSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETT
T ss_pred             ccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECC
Confidence            346679999999875433  68999988765432111  1112222222222333334433 5999988654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.50  E-value=0.00094  Score=34.49  Aligned_cols=68  Identities=16%  Similarity=0.436  Sum_probs=46.0

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CE--E----ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GT--A----IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~--~----~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.  ++  +    +.           ...|+.+..+..  ...|.+.+++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            4568899999999998654  335777763  11  1    11           124666665432  346889999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |.+.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999996543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.49  E-value=0.00081  Score=34.22  Aligned_cols=67  Identities=18%  Similarity=0.473  Sum_probs=45.2

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      -.+.+|+++.|.|.+.|...  -.+.|++.  ++.      +.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            35788999999999986543  35677653  110      11           12466665443  2357899999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|...
T Consensus        90 DTAvYYCAr~   99 (120)
T d1ad9b1          90 DTAFYFCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEc
Confidence            9999999643

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.49  E-value=0.0012  Score=33.61  Aligned_cols=67  Identities=19%  Similarity=0.430  Sum_probs=45.3

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-------------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-------------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-------------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      .+.+|+++.|.|.+.|..  .-.+.|++.  |+.      +.             ...|+.+..+.  ....|.+.+++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            467899999999998654  335778763  211      11             01366665443  235789999999


Q ss_pred             CCCEEEEEEEec
Q psy12132         59 TDFGNYMCQASN   70 (126)
Q Consensus        59 ~d~g~y~C~~~~   70 (126)
                      +|...|.|-...
T Consensus        91 eDtAvYYCA~~~  102 (120)
T d1dlfh_          91 EDTGIYYCTGIY  102 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CCceEEEeeEec
Confidence            999999996543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.001  Score=34.43  Aligned_cols=68  Identities=19%  Similarity=0.498  Sum_probs=46.1

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  ++.      +.           ...++.+..+.  ....|.+.+++.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            357889999999999875433  4667652  110      11           12566666543  2457889999999


Q ss_pred             CCEEEEEEEec
Q psy12132         60 DFGNYMCQASN   70 (126)
Q Consensus        60 d~g~y~C~~~~   70 (126)
                      |...|.|-...
T Consensus        89 DtA~YYCAr~~   99 (133)
T d1rzfh1          89 DTAVYYCASNS   99 (133)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEeeecc
Confidence            99999996543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.47  E-value=0.00082  Score=34.52  Aligned_cols=66  Identities=18%  Similarity=0.434  Sum_probs=44.9

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CE--E----ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GT--A----IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~--~----~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++  +    +.           ...|+.+..+.  ....|.+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            5678999999999987543  35677653  11  1    11           12466665543  23578999999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      .+.|.|...
T Consensus        91 tavYYCAr~   99 (126)
T d1dfbh1          91 MALYYCVKG   99 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEec
Confidence            999999643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00089  Score=34.25  Aligned_cols=67  Identities=15%  Similarity=0.389  Sum_probs=45.5

Q ss_pred             eeccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  ++-      |.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            35678999999999987543  35677652  110      11           12466666543  3457899999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|-..
T Consensus        90 DTAvYYCAR~   99 (124)
T d1yedb1          90 DSAVYFCTRW   99 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEeccc
Confidence            9999999643

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.46  E-value=0.00074  Score=34.54  Aligned_cols=67  Identities=16%  Similarity=0.372  Sum_probs=45.3

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CE--E----ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GT--A----IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~--~----~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++  +    |.           ...|+.+..+.  ....|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            4678999999999987543  35677763  11  0    11           12466665443  23578899999999


Q ss_pred             CEEEEEEEec
Q psy12132         61 FGNYMCQASN   70 (126)
Q Consensus        61 ~g~y~C~~~~   70 (126)
                      .+.|.|....
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999996543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.46  E-value=0.00071  Score=34.67  Aligned_cols=66  Identities=20%  Similarity=0.395  Sum_probs=43.6

Q ss_pred             eccCCccEEEEEEeeecCC----CeeEEEEC--CEE---e---cc----------CCcEEEEecC--CeEEEEEecCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP----AKVEWFRD--GTA---I---TL----------GGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~----~~~~w~~~--~~~---~---~~----------~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      .+.+|+++.|.|.+.|..-    ..+.|++.  +..   +   ..          ..++.+..+.  ....|.|.+++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            4678999999999876432    24678763  211   1   11          1355554432  2357999999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |...|.|...
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999643

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=0.00025  Score=34.31  Aligned_cols=65  Identities=15%  Similarity=0.439  Sum_probs=41.7

Q ss_pred             ccCCccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecC-CCCCCEEEEEEEecCCceeEEEEEEE
Q psy12132          5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNLGSSQQFIQLS   82 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~l~   82 (126)
                      ...|.+|+|.|...+  ...+.|.+++..+.....         ..|.+... ...++|.|.|......  ..+.+-|.
T Consensus        11 SISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~---------~~L~L~~FSE~e~SGyY~C~~~~~~--~~~~LYLK   76 (100)
T d1jbja2          11 SISGTSVELTCPLDS--DENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPASN--KNTYLYLK   76 (100)
T ss_dssp             EEETTEEEEECSSCC--CTTCEEEETTEEECSCCC---------SEEEEESCCTTTSCEEEEEECSSCC--CCCCEEEC
T ss_pred             EEeCCEEEEECCCCC--CCceEEeeccccCCCCCC---------cEEEEccccccccCcceEEecCCCC--cceEEEEE
Confidence            456899999998763  346999999987753211         13555554 3489999999644332  23444444

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.45  E-value=0.00029  Score=35.19  Aligned_cols=66  Identities=18%  Similarity=0.423  Sum_probs=43.3

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec----------cCCcEEEEecCC--eEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT----------LGGRIDMHVSSE--KHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~----------~~~~~~~~~~~~--~~~l~i~~~~~~d~   61 (126)
                      .+.+|+++.|.|.+.|..  ...+.|++.  |+.      +.          ...++.+..+..  ...|.|.+++.+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            467899999999987642  335678763  111      11          124666655432  35799999999999


Q ss_pred             EEEEEEEe
Q psy12132         62 GNYMCQAS   69 (126)
Q Consensus        62 g~y~C~~~   69 (126)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.45  E-value=0.00085  Score=34.54  Aligned_cols=67  Identities=19%  Similarity=0.395  Sum_probs=44.9

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CE--E----ec-----------cCCcEEEEecCC--eEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GT--A----IT-----------LGGRIDMHVSSE--KHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~--~----~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...  ..+.|++.  ++  +    +.           ...|+.+..+..  ...|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            4678999999999987532  34667652  11  0    11           124666655442  3578999999999


Q ss_pred             CEEEEEEEec
Q psy12132         61 FGNYMCQASN   70 (126)
Q Consensus        61 ~g~y~C~~~~   70 (126)
                      .+.|.|-...
T Consensus        91 TA~YYCAr~~  100 (127)
T d2fb4h1          91 TGVYFCARDG  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeEEEEEEec
Confidence            9999996543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.44  E-value=0.00085  Score=34.49  Aligned_cols=66  Identities=17%  Similarity=0.471  Sum_probs=44.8

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  ++.      +.           ...++.+..+.  ....|.+.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            457789999999999875432  4677652  111      11           12466666543  2357889999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |.+.|.|..
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999963

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.42  E-value=0.00076  Score=34.57  Aligned_cols=66  Identities=18%  Similarity=0.384  Sum_probs=44.9

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CE--E----ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GT--A----IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~--~----~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |+  +    +.           ...|+.+..+..  ...|.+.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            456789999999999875432  4677652  11  0    11           124666655443  357899999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |...|.|-.
T Consensus        90 DTA~YYCAR   98 (124)
T d2b1hh1          90 DTALYYCAR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999953

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00023  Score=35.67  Aligned_cols=31  Identities=16%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             cCCccEEEEEEeeec-CC-CeeEEEECCEEecc
Q psy12132          6 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITL   36 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~   36 (126)
                      ..++.+.|.|.+.+. |. ..+.|.++|..+..
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~   50 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPR   50 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEECCeEcCC
Confidence            346789999999875 33 37999999987654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.40  E-value=0.0013  Score=33.82  Aligned_cols=65  Identities=20%  Similarity=0.437  Sum_probs=43.5

Q ss_pred             eccCCccEEEEEEeeecCC----CeeEEEEC--CEE---e---c----------cCCcEEEEecC--CeEEEEEecCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP----AKVEWFRD--GTA---I---T----------LGGRIDMHVSS--EKHSLLVRHIKDT   59 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~----~~~~w~~~--~~~---~---~----------~~~~~~~~~~~--~~~~l~i~~~~~~   59 (126)
                      .+.+|+++.|.|.+.|...    ..+.|++.  ++.   +   .          ...++.+..+.  ....|.|.+++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            4678999999999886432    24568753  111   1   1          12356655443  2357999999999


Q ss_pred             CCEEEEEEE
Q psy12132         60 DFGNYMCQA   68 (126)
Q Consensus        60 d~g~y~C~~   68 (126)
                      |...|.|-.
T Consensus        91 DtAvYyCAr   99 (126)
T d1etzb1          91 DTATYHCAR   99 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             ccceEEEEE
Confidence            999999964

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.37  E-value=0.00054  Score=35.41  Aligned_cols=67  Identities=15%  Similarity=0.481  Sum_probs=44.8

Q ss_pred             eeccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecCC--eEEEEEecCCCC
Q psy12132          3 SITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSSE--KHSLLVRHIKDT   59 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~~--~~~l~i~~~~~~   59 (126)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  ++.      +.           ...++++..+..  ...|.+.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSE   89 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCC
Confidence            3567899999999998654  335777652  111      11           124666654432  346889999999


Q ss_pred             CCEEEEEEEe
Q psy12132         60 DFGNYMCQAS   69 (126)
Q Consensus        60 d~g~y~C~~~   69 (126)
                      |.+.|.|-..
T Consensus        90 DtA~YYCAr~   99 (130)
T d1rzga1          90 DTAVFYCASP   99 (130)
T ss_dssp             GCEEEEEEEC
T ss_pred             ccEEEEEEEe
Confidence            9999999643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00088  Score=33.44  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=36.3

Q ss_pred             CccEEEEEEeeecC-C-CeeEEEECCEEeccCCcEEE----EecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYANP-P-AKVEWFRDGTAITLGGRIDM----HVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p-~-~~~~w~~~~~~~~~~~~~~~----~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      +..++|.|.+.+.- . ..+.|.++|..+........    ..++..   +.|.+..-.-.....|+|.+....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            56789999997653 2 37999999887643211111    011211   234443332122347999988653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.33  E-value=0.0012  Score=33.79  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=44.6

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CEE------ec-----------cCCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|..  ...+.|++.  ++.      +.           ...|+.+..+.  ....|.|.+++.+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            467899999999998644  235777763  111      11           12466665543  23578899999999


Q ss_pred             CEEEEEEEe
Q psy12132         61 FGNYMCQAS   69 (126)
Q Consensus        61 ~g~y~C~~~   69 (126)
                      ...|.|...
T Consensus        91 TAvYYCAr~   99 (125)
T d1op3h1          91 TAIYYCARK   99 (125)
T ss_dssp             CEEEEEEEE
T ss_pred             ceeEeEeec
Confidence            999999654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00083  Score=33.45  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             CCccEEEEEEeeec-C-CCeeEEEECCEEeccCCcE----EEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLGGRI----DMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~~~----~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++.++|.|.+.+. | ...+.|.++|..+......    ....++..   +.|.+..-.-.....|+|.+....
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA   92 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTT
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            45679999999764 3 3489999999876532211    11122222   234443332223346999988653

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.32  E-value=0.0013  Score=33.57  Aligned_cols=67  Identities=18%  Similarity=0.383  Sum_probs=45.4

Q ss_pred             eccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-------------cCCcEEEEecCC--eEEEEEecCCC
Q psy12132          4 ITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-------------LGGRIDMHVSSE--KHSLLVRHIKD   58 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-------------~~~~~~~~~~~~--~~~l~i~~~~~   58 (126)
                      .+.+|+++.|.|.+.|....  .+.|++.  |+.      +.             ...|+.+..+..  ...|.+.+++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   90 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeecc
Confidence            56789999999999875433  5778763  110      11             013666654432  35689999999


Q ss_pred             CCCEEEEEEEec
Q psy12132         59 TDFGNYMCQASN   70 (126)
Q Consensus        59 ~d~g~y~C~~~~   70 (126)
                      +|...|.|....
T Consensus        91 eDTAvYYCar~~  102 (122)
T d1q9rb1          91 EDSATYYCARDH  102 (122)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEEEecC
Confidence            999999997543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.29  E-value=0.0013  Score=33.78  Aligned_cols=65  Identities=18%  Similarity=0.401  Sum_probs=44.1

Q ss_pred             eccCCccEEEEEEeeecCC---CeeEEEEC--CEE------ecc----------CCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP---AKVEWFRD--GTA------ITL----------GGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~---~~~~w~~~--~~~------~~~----------~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|...   -.+.|++.  |+.      +..          ..++.+..+.  ....|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            4678999999999987643   35788763  221      111          1244444332  23579999999999


Q ss_pred             CEEEEEEE
Q psy12132         61 FGNYMCQA   68 (126)
Q Consensus        61 ~g~y~C~~   68 (126)
                      ...|.|-.
T Consensus        91 tAvYyCAr   98 (127)
T d3cx5j1          91 TATYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999964

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.28  E-value=0.00091  Score=34.08  Aligned_cols=67  Identities=18%  Similarity=0.399  Sum_probs=44.4

Q ss_pred             eeccCCccEEEEEEeeecCCC--eeEEEEC--CEE------ec-------------cCCcEEEEecC--CeEEEEEecCC
Q psy12132          3 SITAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-------------LGGRIDMHVSS--EKHSLLVRHIK   57 (126)
Q Consensus         3 ~~~~~g~~~~l~C~~~~~p~~--~~~w~~~--~~~------~~-------------~~~~~~~~~~~--~~~~l~i~~~~   57 (126)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |+.      +.             ...|+.+..+.  ....|.+.+++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            457889999999999875433  4678762  211      11             11244444432  23469999999


Q ss_pred             CCCCEEEEEEEe
Q psy12132         58 DTDFGNYMCQAS   69 (126)
Q Consensus        58 ~~d~g~y~C~~~   69 (126)
                      .+|.+.|.|-..
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999643

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0022  Score=31.94  Aligned_cols=65  Identities=18%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             CccEEEEEEeeec-CC-CeeEEEECCEEeccCCcEEEE----ecCC---eEEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMH----VSSE---KHSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~~~~----~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .+.+.|.|.+.+. |. ..+.|.++|..+.........    .++.   .+.|.+..-.-.....|+|.+....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4579999999875 33 379999998765432111111    1111   1245554432122337999988754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00042  Score=35.14  Aligned_cols=66  Identities=20%  Similarity=0.447  Sum_probs=43.9

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ecc----------CCcEEEEecCC--eEEEEEecCCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------ITL----------GGRIDMHVSSE--KHSLLVRHIKDTDF   61 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~~----------~~~~~~~~~~~--~~~l~i~~~~~~d~   61 (126)
                      .+.+|+++.|.|.+.|...  -.+.|++.  ++.      +..          ..|+++..+..  ...|.+.+++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            4678999999999987543  35778763  211      111          13444444332  34688899999999


Q ss_pred             EEEEEEEe
Q psy12132         62 GNYMCQAS   69 (126)
Q Consensus        62 g~y~C~~~   69 (126)
                      ..|.|-..
T Consensus        91 AvYyCAr~   98 (116)
T d1fn4b1          91 GTYYCTRD   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99999654

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00029  Score=34.94  Aligned_cols=65  Identities=15%  Similarity=0.190  Sum_probs=36.7

Q ss_pred             CccEEEEEEeeec-CC-CeeEEEECCEEeccC--CcEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYAN-PP-AKVEWFRDGTAITLG--GRIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~--~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      ++.+.|.|.+.+. |. ..+.|.++|......  .......++..   +.|.+..-.-.....|+|.+....
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            5679999999875 32 389999998765321  11111122222   234444332222336999988753

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.21  E-value=0.00053  Score=33.95  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             CCccEEEEEEeeec-C-CCeeEEEECCEEeccC--CcEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-P-PAKVEWFRDGTAITLG--GRIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~--~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++.+.|.|.+.+. | ...+.|.++|......  .......++..   +.|.+..-.-.....|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46779999999874 4 3479999998764321  01111122222   234443322112346999987653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0013  Score=31.33  Aligned_cols=73  Identities=14%  Similarity=0.315  Sum_probs=44.6

Q ss_pred             ccCCccEEEEEEeeecCCCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCC-CCCEEEEEEEecC-CceeEEEEE
Q psy12132          5 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASNN-LGSSQQFIQ   80 (126)
Q Consensus         5 ~~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~-~~~~~~~~~   80 (126)
                      ...|.+|.|+|...  ....+.|.+++..+....  ........   .|.+...+. .++|.|.|.+... .....+.+-
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~---~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LY   81 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDED---HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY   81 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETT---EEEETTCCHHHHCEEEEEEETTSCGGGCCEEEE
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccc---eEEecccCccccCceEEEEcCCCCCCCcceEEE
Confidence            44689999999643  456799999987765321  11111111   466666655 6899999987543 223344444


Q ss_pred             EE
Q psy12132         81 LS   82 (126)
Q Consensus        81 l~   82 (126)
                      |.
T Consensus        82 LK   83 (91)
T d1xiwa_          82 LR   83 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.16  E-value=0.0024  Score=33.01  Aligned_cols=66  Identities=20%  Similarity=0.409  Sum_probs=44.2

Q ss_pred             eccCCccEEEEEEeeecCC--CeeEEEEC--CEE------ec-------------cCCcEEEEecC--CeEEEEEecCCC
Q psy12132          4 ITAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT-------------LGGRIDMHVSS--EKHSLLVRHIKD   58 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p~--~~~~w~~~--~~~------~~-------------~~~~~~~~~~~--~~~~l~i~~~~~   58 (126)
                      .+.+|+++.|.|.+.|...  ..+.|++.  ++.      |.             ...++.+..+.  ....|.+.+++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            5678999999999986543  35667652  111      10             12456665443  235799999999


Q ss_pred             CCCEEEEEEEe
Q psy12132         59 TDFGNYMCQAS   69 (126)
Q Consensus        59 ~d~g~y~C~~~   69 (126)
                      +|...|.|...
T Consensus        91 eDTAvYYCAR~  101 (131)
T d3c2ah1          91 EDTAVYSCTTD  101 (131)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEecc
Confidence            99999999643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00038  Score=34.49  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccC--CcEEEEecCCe---EEEEEecCCCCCCEEEEEEEecC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLG--GRIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~--~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+.|.|.+.+.-+  ..+.|.+++......  .......++..   +.|.+....-.....|+|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            467899999976643  379999998765321  11111222222   23444443223334699998765

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.0031  Score=31.08  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             CCccEEEEEEeeec-CCC--eeEEEECCEEeccC-CcEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-PPA--KVEWFRDGTAITLG-GRIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~~--~~~w~~~~~~~~~~-~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~   72 (126)
                      .++.+.|.|.+.+. |..  .+.|.+++..+... .......++..   +.|.+....-.....|+|.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s   90 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDS   90 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETT
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECC
Confidence            46789999999984 443  46787776443211 11111122221   245555544333457999997653

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00053  Score=33.91  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             CccEEEEEEeeec-C-CCeeEEEECCEEeccCC--cEEEEecCCe---EEEEEecCCCCCCEEEEEEEecC
Q psy12132          8 DMRAEIICNVYAN-P-PAKVEWFRDGTAITLGG--RIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus         8 g~~~~l~C~~~~~-p-~~~~~w~~~~~~~~~~~--~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.+.|.|.+.+. | ...+.|.++|..+....  ......++..   +.|.+..-.-.....|+|.+...
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            5678999999874 4 34799999997654211  1111122221   23444332212334699988765

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0018  Score=31.42  Aligned_cols=57  Identities=14%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             eeEEEECC--EE----------eccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecCCcee--EEEEEEEe
Q psy12132         24 KVEWFRDG--TA----------ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQLSG   83 (126)
Q Consensus        24 ~~~w~~~~--~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l~~   83 (126)
                      .++|.+.+  ..          ......+.+..+|   +|.|..+.+.|+|.|.-.+.+..|..  ...+.|.+
T Consensus        29 dIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nG---tLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI   99 (101)
T d1hnfa1          29 DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI   99 (101)
T ss_dssp             EEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eeEEEecCCCcceeeecccCCCCCCCceEEEccCC---cEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEe
Confidence            58898832  22          2233456677777   89999999999999999999887755  34444443

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.0035  Score=30.90  Aligned_cols=66  Identities=17%  Similarity=0.345  Sum_probs=36.8

Q ss_pred             CCccEEEEEEeeec-CC---CeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCCC--CE-EEEEEEecCC
Q psy12132          7 PDMRAEIICNVYAN-PP---AKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTD--FG-NYMCQASNNL   72 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~---~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d--~g-~y~C~~~~~~   72 (126)
                      .+.++.|.|.+.+. |.   ..+.|.++|..+....  ......++.........+...+  .| .|+|.+....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            46678999999764 33   3788999887654321  1111222222233333444332  33 5999988753

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.95  E-value=0.00049  Score=34.87  Aligned_cols=65  Identities=15%  Similarity=0.366  Sum_probs=43.9

Q ss_pred             eccCCccEEEEEEeeecC--CCeeEEEEC--CE------Eec-c----------CCcEEEEecC--CeEEEEEecCCCCC
Q psy12132          4 ITAPDMRAEIICNVYANP--PAKVEWFRD--GT------AIT-L----------GGRIDMHVSS--EKHSLLVRHIKDTD   60 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~p--~~~~~w~~~--~~------~~~-~----------~~~~~~~~~~--~~~~l~i~~~~~~d   60 (126)
                      .+.+|+++.|.|.+.|..  .-.+.|++.  ++      .|. .          ..++.+..+.  ....|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD   90 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED   90 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc
Confidence            567899999999997643  335667652  11      111 1          1466666543  34578999999999


Q ss_pred             CEEEEEEE
Q psy12132         61 FGNYMCQA   68 (126)
Q Consensus        61 ~g~y~C~~   68 (126)
                      .+.|.|-.
T Consensus        91 TAvYYCAr   98 (117)
T d1b2wh1          91 TAVYYCAR   98 (117)
T ss_dssp             CEEEECCE
T ss_pred             ceEEEEcc
Confidence            99999953

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.005  Score=30.39  Aligned_cols=67  Identities=19%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             cCCccEEEEEEeeec-CC---CeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCC---CCEEEEEEEecCC
Q psy12132          6 APDMRAEIICNVYAN-PP---AKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDT---DFGNYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p~---~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~---d~g~y~C~~~~~~   72 (126)
                      ..++.+.|.|.+.+. |.   ..+.|.+++..+....  ......++.........+...   ....|+|.+....
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            346789999999864 32   3678999987664321  111122232223333344433   2336999988754

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0024  Score=30.18  Aligned_cols=48  Identities=21%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             CCccEEEEEEeeecCCCeeEEEECCEE-e-ccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          7 PDMRAEIICNVYANPPAKVEWFRDGTA-I-TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         7 ~g~~~~l~C~~~~~p~~~~~w~~~~~~-~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .++.+.|.|...  ..-.|.|.+++.. + ..+.           ++++.--...|.|+|+|+
T Consensus        20 ~~~~V~L~C~t~--eE~~I~W~kd~~se~~~~Gn-----------tltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTP--EEDGITWTLDQSSEVLGSGK-----------TLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSS--CCSSCEEEETTCCCCCEESS-----------EEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCC--cccccEEeeCCccccccCCC-----------EEEEEEEeccCCcceeEe
Confidence            356789999442  1336999998643 2 2222           344433334688999997

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0015  Score=31.42  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=24.0

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|.|.+  .+..++..|.+.|+...
T Consensus        11 ~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~   42 (93)
T d2vkwa2          11 GEDGNSIKVNLIKQDDGGSPIRHYLVRYRALS   42 (93)
T ss_dssp             CTTSSCEEEEEECCCCTTSCCCEEEEEEEETT
T ss_pred             EcCCCEEEEEeeCCCCCcCceEEEEEEeeecC
Confidence            3466789999998  45578999999999764

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.81  E-value=0.0067  Score=31.07  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=36.3

Q ss_pred             CccEEEEEEeeecCCC--eeEEEECCEEeccCCcE----EE----EecCC---eEEEEEecCCCCCCE-EEEEEEecC
Q psy12132          8 DMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI----DM----HVSSE---KHSLLVRHIKDTDFG-NYMCQASNN   71 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~----~~----~~~~~---~~~l~i~~~~~~d~g-~y~C~~~~~   71 (126)
                      +..++|.|.+.+.-+.  .+.|+++|..+......    ..    ..++.   .+.|.+....=.+.| .|+|.+...
T Consensus        20 ~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          20 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             CCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            4568999999875433  79999999876432100    00    00111   124555443323434 699998764

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.81  E-value=0.00011  Score=36.71  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             CccEEEEEEeeec-CC-CeeEEEECCEEeccCCcE--EEEecCCeEEEEEecCCC---CCCEEEEEEEecCC
Q psy12132          8 DMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRI--DMHVSSEKHSLLVRHIKD---TDFGNYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~-p~-~~~~w~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~---~d~g~y~C~~~~~~   72 (126)
                      ++.+.|.|.+.+. |. ..+.|.+++..+......  ....++.........+..   .+...|+|.+....
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEG   91 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECC
Confidence            5568899999874 43 379999999877532111  111122111222222222   22346999988754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.75  E-value=0.0089  Score=30.23  Aligned_cols=67  Identities=12%  Similarity=0.233  Sum_probs=39.4

Q ss_pred             cCCccEEEEEEeeec-C---CCeeEEEECCEEeccCC--cEEEEecCCeEEEEEecCCCC---CCEEEEEEEecCC
Q psy12132          6 APDMRAEIICNVYAN-P---PAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDT---DFGNYMCQASNNL   72 (126)
Q Consensus         6 ~~g~~~~l~C~~~~~-p---~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~---d~g~y~C~~~~~~   72 (126)
                      ..++.+.|.|.+.+. |   ...+.|.+++..+....  ......++.........+...   ....|+|.+....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            346789999999874 3   24688999998765322  112223333233333344433   2346999998753

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00027  Score=35.02  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             CCccEEEEEEeeec--CC-CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCC---CEEEEEEEecC
Q psy12132          7 PDMRAEIICNVYAN--PP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD---FGNYMCQASNN   71 (126)
Q Consensus         7 ~g~~~~l~C~~~~~--p~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---~g~y~C~~~~~   71 (126)
                      .++.++|.|.+.+.  |. ..+.|.+++.............++.........+...+   ...|+|.+...
T Consensus        17 ~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~   87 (101)
T d1ow0a1          17 LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP   87 (101)
T ss_dssp             HCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred             cCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeC
Confidence            46789999999874  32 37999886643211111111222222233344454443   34799988764

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0069  Score=29.79  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             CCccEEEEEEeeec-CC---CeeEEEECCEEeccCCcEEE--EecCCeEEEEEecCCCCC---CEEEEEEEecC
Q psy12132          7 PDMRAEIICNVYAN-PP---AKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD---FGNYMCQASNN   71 (126)
Q Consensus         7 ~g~~~~l~C~~~~~-p~---~~~~w~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d---~g~y~C~~~~~   71 (126)
                      .+..++|.|.+.+. |.   ..+.|.+++...........  ..++.........+...+   ...|+|.+...
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~   88 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHP   88 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECS
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEEC
Confidence            46678999999875 33   25678787655432211111  112211222223333322   34699998875

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.014  Score=27.20  Aligned_cols=53  Identities=23%  Similarity=0.494  Sum_probs=34.5

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ...+.|.|.   ....+++|++++..+...       +....++.+-+.-.+..|.|.|....
T Consensus        17 dg~V~L~Cn---~~~k~i~W~kdg~~i~~~-------~~~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          17 DGSVLLTCD---AEAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSEEEEEEC---SCSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             CCeEEEEeC---CCCcEEEEecCCeEeecc-------cCCcceeecCCcccCCCcceEcCCCC
Confidence            346899994   345589999998765311       11112466666667789999997543

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.29  E-value=0.0016  Score=32.73  Aligned_cols=65  Identities=11%  Similarity=0.179  Sum_probs=36.0

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCC--CE-EEEEEEecCC
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD--FG-NYMCQASNNL   72 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d--~g-~y~C~~~~~~   72 (126)
                      +..++|.|.+.+.-+  ..+.|.+++.............++.........+...+  .| .|+|.+....
T Consensus        27 ~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          27 KKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             CCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            567889999987533  47999877632110000011122323344455566655  23 5999988753

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0027  Score=31.35  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             CccEEEEEEeeecCC--CeeEEEECCEEeccC-CcEEEEecCCe---EEEEEecCCCCCCEEEEEEEecCCc
Q psy12132          8 DMRAEIICNVYANPP--AKVEWFRDGTAITLG-GRIDMHVSSEK---HSLLVRHIKDTDFGNYMCQASNNLG   73 (126)
Q Consensus         8 g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~-~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~   73 (126)
                      +..+.|.|.+.+.-+  ..+.|.+++...... .......++..   +.|.+..-.- ....|+|.+.....
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~   90 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPS   90 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGG
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCC
Confidence            567999999976533  379997766431100 01111112211   2455544332 23469999887643

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0088  Score=28.96  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             eeCCCeeEEEEEE---ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV---DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+   .+..++..|.++||...
T Consensus        12 ~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~   44 (98)
T d1x5ya1          12 DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEG   44 (98)
T ss_dssp             EECSSEEEEEEECCSCCCSSCCCEEEEEEEETT
T ss_pred             EccCCEEEEEEECCCcCCCCCceEEEEEEEecC
Confidence            4567789999997   33467899999998753

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.015  Score=27.96  Aligned_cols=28  Identities=25%  Similarity=0.624  Sum_probs=22.7

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ..+.+.|+|.+....++..|.+.|+...
T Consensus        14 ~~~s~~vsW~~P~~~~i~~Y~i~y~~~~   41 (93)
T d1owwa_          14 QPNSHPIQWNAPQPSHISKYILRWRPKN   41 (93)
T ss_dssp             CTTCEEEEEECCSSSCEEEEEEEEEETT
T ss_pred             CCCEEEEEeecccccceeEEEEEEeecc
Confidence            3468999999865667899999999754

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.87  E-value=0.013  Score=28.34  Aligned_cols=40  Identities=25%  Similarity=0.510  Sum_probs=27.5

Q ss_pred             cCCCCeeccCcceeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         84 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      +|.+|..... . ...+.+.|+|.+  .+..++..|.++|+...
T Consensus         5 vP~~P~~~~v-~-~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~   46 (100)
T d1cfba1           5 VPNAPKLTGI-T-CQADKAEIHWEQQGDNRSPILHYTIQFNTSF   46 (100)
T ss_dssp             CCCCCEEEEE-E-ECSSEEEEEEECCCCTTSCCCEEEEEEEESS
T ss_pred             CCCcCcCcEE-E-EcCCEEEEEEcCCcccccceEEEEEEEecCC
Confidence            3455554442 2 355789999987  34578899999998753

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0094  Score=27.28  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             ccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          9 MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         9 ~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      +.+.|.|.      .++.|++++..+....         ...+.+-+.-.+..|.|.|....
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~~~~~~---------~k~lnLG~~~~DPRG~Y~C~~~e   56 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVGTLLSD---------ITRLDLGKRILDPRGIYRCNGTD   56 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCCEEEGG---------GTEEEEEEGGGCCEEEEEEC---
T ss_pred             CeEEEEcc------CeeEEecCCcccccCC---------ccEeecCCcccCCCcceEeCCcc
Confidence            46889993      5699998764322111         11455556666778999997553

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.017  Score=27.63  Aligned_cols=27  Identities=15%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             CCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         99 PDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      .+.+.|+|.+.....+.+|.+.|+...
T Consensus        16 ts~i~v~W~~p~~~~i~~Y~v~y~~~~   42 (94)
T d1fnfa1          16 TGVLTVSWERSTTPDITGYRITTTPTN   42 (94)
T ss_dssp             SSCEEEEEECCSCSSCCEEEEEEEETT
T ss_pred             CCEEEEEeeCCCCCCeeEEEEEEEEec
Confidence            345789999865556889999998754

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.56  E-value=0.021  Score=27.20  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             cceeCCCeeEEEEEE---ccCCcceeEEEEEEEe
Q psy12132         94 SRRLGPDGYRLVWQV---DTYSAIIQYLLKFRER  124 (126)
Q Consensus        94 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~  124 (126)
                      ......+.+.|+|..   .+..++..|.+.||..
T Consensus        15 v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~   48 (95)
T d2ibga1          15 IEEYSETAVVLHWSLASDADEHLITGYYAYYRPS   48 (95)
T ss_dssp             CBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEET
T ss_pred             EEEeCCCEEEEEEEeeeeccCCcccccceeEeee
Confidence            444567789999986   2336688999999975

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.014  Score=27.60  Aligned_cols=30  Identities=20%  Similarity=0.610  Sum_probs=23.5

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+....++..|.+.|+...
T Consensus        11 ~~~~~sv~l~W~~p~~~~~~~y~v~y~~~~   40 (91)
T d1fnfa2          11 NIGPDTMRVTWAPPPSIDLTNFLVRYSPVK   40 (91)
T ss_dssp             SCCSSCEEEEEECCTTCCCSEEEEEEEETT
T ss_pred             EeCCCEEEEEEEecCCCCcceeEEEEEECC
Confidence            346778999999866667889999998754

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.038  Score=25.99  Aligned_cols=53  Identities=21%  Similarity=0.473  Sum_probs=34.3

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEec
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN   70 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   70 (126)
                      ...|.|.|..   ...+++|++++..+.....       ...++.+-+.-..-.|.|.|....
T Consensus        22 dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~-------~~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          22 DGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESS
T ss_pred             CCeEEEEeCC---CCcEEEEecCCceeccccc-------ccceeecCCcccCCCcceEcCCCc
Confidence            3468899943   3458999999987642210       001355556667779999997554

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.019  Score=27.79  Aligned_cols=28  Identities=11%  Similarity=0.141  Sum_probs=21.8

Q ss_pred             CCCeeEEEEEE---ccCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQV---DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~---~~~~~~~~~~~~~r~~~  125 (126)
                      ..+.+.|.|..   .++.++..|.++||...
T Consensus        14 ~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~   44 (101)
T d2haza1          14 YSSTAQVQFDEPEATGGVPILKYKAEWRAVG   44 (101)
T ss_dssp             CSSCEEEEEECCSCCTTSCCCEEEEEEEETT
T ss_pred             eCCEEEEEEeCCCcCccccEEEEEEEEeecC
Confidence            45679999996   23468999999999753

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.37  E-value=0.02  Score=28.05  Aligned_cols=29  Identities=24%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+  .++.++..|.|+||..
T Consensus        10 ~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~   40 (107)
T d2ic2a1          10 RLSDESVMLRWMVPRNDGLPIVIFKVQYRMV   40 (107)
T ss_dssp             ECC---EEEEEEEECCSSCCEEEEEEEEEEC
T ss_pred             EEECCEEEEEEEeCccccCCceEEEEEEEec
Confidence            3466789999998  4557899999999864

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.03  Score=26.82  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=27.7

Q ss_pred             cCCCCeeccCcceeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         84 IPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      .|.+|.... ......+.+.|+|.......++.|.+.|+..
T Consensus         2 ~P~~P~nl~-v~~~~~~~v~l~W~~p~~~~~~~y~v~y~~~   41 (95)
T d2b5ic1           2 IPWAPENLT-LHKLSESQLELNWNNRFLNHCLEHLVQYRTD   41 (95)
T ss_dssp             ECCCCEEEE-EEEEETTEEEEEEECSSCSTTCEEEEEEEET
T ss_pred             CCcCCCCCE-EEEEeCCEEEEEECCCCCceeEEEEEEEEcC
Confidence            345555443 2344667899999986666678899999875

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.014  Score=28.78  Aligned_cols=30  Identities=7%  Similarity=0.214  Sum_probs=23.3

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+  .++.++..|.++||...
T Consensus        21 ~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~   52 (108)
T d1x4za1          21 TASETSVYVTWIPRGNGGFPIQSFRVEYKKLK   52 (108)
T ss_dssp             ECCSSEEEEECCCCCCTTSCCCEEEEEEEESS
T ss_pred             EccCCEEEEEEECCCCCCCccEEEEEEEEecC
Confidence            3466789999987  44578999999998753

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.028  Score=27.72  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             ecCCCCeeccC-cceeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         83 GIPNIPVFQKS-SRRLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      +++.+|..... ........+.|+|..  ....+++.|.+.||...
T Consensus         3 vkP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~   48 (115)
T d1bqua2           3 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKD   48 (115)
T ss_dssp             EECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETT
T ss_pred             eECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeee
Confidence            34556654432 223456779999987  33467889999999754

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.031  Score=26.51  Aligned_cols=29  Identities=14%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+  ....++..|.+.|+...
T Consensus        11 ~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~   41 (94)
T d2dn7a1          11 TAMNTALLQWHPPKELPGELLGYRLQYCRAD   41 (94)
T ss_dssp             CSTTEEEEEEECCSSCSSCCCEEEEEEEETT
T ss_pred             EeCCEEEEEEeCCCCCCCceEEEEEEEEEcC
Confidence            456789999998  33467899999998754

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0039  Score=31.30  Aligned_cols=30  Identities=13%  Similarity=0.245  Sum_probs=23.1

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+  .+..++..|.++|++..
T Consensus        26 ~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~   57 (117)
T d1uema_          26 DVTKNSVTLSWQPGTPGTLPASAYIIEAFSQS   57 (117)
T ss_dssp             EECSSCEEEECCCCBCSSSCCCEEEEEEEETT
T ss_pred             EccCCEEEEEEECCCcCCCCeEEEEEEEeccC
Confidence            3567789999987  34577899999988753

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.013  Score=28.87  Aligned_cols=29  Identities=28%  Similarity=0.591  Sum_probs=22.9

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+  +++.++..|.++||...
T Consensus        24 ~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~   54 (108)
T d1wf5a1          24 VERRAINLTWTKPFDGNSPLIRYILEMSENN   54 (108)
T ss_dssp             SSTTEEEEECCCCCCCSSCEEEEEEEEECTT
T ss_pred             ccCCEEEEEEECCCCCCCccEEEEEEEEecc
Confidence            456689999987  45578899999998754

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.016  Score=27.93  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=21.2

Q ss_pred             CCCeeEEEEEE---ccCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQV---DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~---~~~~~~~~~~~~~r~~~  125 (126)
                      ..+.+.|+|.+   .+..++..|.++|+...
T Consensus        15 ~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~   45 (97)
T d2crza1          15 KAKEIQLRWGPPLVDGGSPISCYSVEMSPIE   45 (97)
T ss_dssp             CSSEEEEECCCCSCCTTSCCCEEEEEEECTT
T ss_pred             eCCEEEEEEeCCCcCCCCceeEEEEEEEcCc
Confidence            45689999986   33457899999998753

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.015  Score=27.77  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             ceeCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         95 RRLGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      .....+.+.|+|.+....++..|.+.|+...
T Consensus        15 ~~~t~~si~l~W~~p~~~~i~~Y~v~~~~~~   45 (95)
T d2fnba_          15 VDITDSSIGLRWTPLNSSTIIGYRITVVAAG   45 (95)
T ss_dssp             ECCCSSCEEEECCCCCCSSCCEEEEEEEEET
T ss_pred             EEEcCCEEEEEEEecCCceEEeEEEEEEEee
Confidence            3456778999998865667889999998764

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.048  Score=26.41  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=25.7

Q ss_pred             ecCCCCeeccCcceeCCCeeEEEEEE---ccCCcceeEEEEEEEec
Q psy12132         83 GIPNIPVFQKSSRRLGPDGYRLVWQV---DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~~  125 (126)
                      |.+.||.............+.+.|..   ......+.|.+.||...
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~   48 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGN   48 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCC
Confidence            34556655543333344568899986   23356678999998754

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.034  Score=26.80  Aligned_cols=29  Identities=17%  Similarity=0.324  Sum_probs=23.3

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+....++..|.+.|+..
T Consensus        21 ~~~~~si~l~W~~p~~~~i~~Y~i~y~~~   49 (102)
T d1x5za1          21 PESETSILLSWTPPRSDTIANYELVYKDG   49 (102)
T ss_dssp             CSSSSEEEEEEECCSCCCCCEEEECBEES
T ss_pred             EccCCEEEEEEECCCCCCccceEEEEEeC
Confidence            34667899999986666788999999875

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.046  Score=26.22  Aligned_cols=32  Identities=28%  Similarity=0.640  Sum_probs=23.6

Q ss_pred             cceeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         94 SRRLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        94 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ........+.|+|..  ....++..|.+.|+...
T Consensus        12 ~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~   45 (98)
T d1x5la1          12 QERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKD   45 (98)
T ss_dssp             CSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESS
T ss_pred             EEeccCCEEEEEEECCCCCCCCEEEEEEEeeccc
Confidence            334567789999986  33467889999998753

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.032  Score=27.16  Aligned_cols=30  Identities=13%  Similarity=0.524  Sum_probs=22.3

Q ss_pred             eeCCCeeEEEEEE---ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV---DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+   +++.++..|.++|+...
T Consensus        22 ~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~   54 (107)
T d2crma1          22 KIHSHSFKITWDPPKDNGGATINKYVVEMAEGS   54 (107)
T ss_dssp             EEETTEEEEECCCCTTCCSSCCCEEEEEEEESS
T ss_pred             eecCCEEEEEEEECccCCcceEEEEEEEEEeec
Confidence            3456789999986   33467889999988653

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.13  E-value=0.06  Score=26.93  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=22.2

Q ss_pred             CCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ..+.+.|+|.+  ....+++.|.++|+...
T Consensus        19 ~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~   48 (123)
T d1wfta_          19 NVDGIHLSWEPPTSPSGNILEYSAYLAIRT   48 (123)
T ss_dssp             CSSEEEEEEECCSSCCSSCCCEEEEEEECS
T ss_pred             CCCEEEEEecCchhcCCceEEEEEEEEECC
Confidence            45689999997  34568999999998753

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.13  Score=25.68  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=23.0

Q ss_pred             eeCCCeeEEEEEEc-cCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVD-TYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~-~~~~~~~~~~~~r~~~  125 (126)
                      ......+.|+|... ...++..|.+.|+...
T Consensus        26 ~~s~tsi~v~W~~p~~~~~i~gY~v~y~~~~   56 (120)
T d1ujta_          26 VLTPTTVQVTWTVDRQPQFIQGYRVMYRQTS   56 (120)
T ss_dssp             CCBTTEEEEEEEESSCCSSCCEEEEEEEESS
T ss_pred             EeCCCeEEEEecCCCCCCcEEEEEEEeeecc
Confidence            34677999999983 3467889999998753

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.1  Score=25.33  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ..+.+.|+|.+  ....++..|.++||...
T Consensus        19 t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~   48 (108)
T d1v5ja_          19 TPRGVLLHWDPPELVPKRLDGYVLEGRQGS   48 (108)
T ss_dssp             CSSSEEEEEECCSCCSSCCCBEEEEEEETT
T ss_pred             cCCEEEEEEEecccCCCceeEEEEEeeeee
Confidence            55689999997  33467889999998754

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.16  Score=24.56  Aligned_cols=29  Identities=14%  Similarity=0.219  Sum_probs=21.9

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|++  .....++.|.+.||+..
T Consensus        19 ~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~   49 (106)
T d1cd9b2          19 HQPGCLWLSWKPWKPSEYMEQECELRYQPQL   49 (106)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESS
T ss_pred             CCCCEEEEEEcCcccCCccceEEEEEEeecc
Confidence            356689999997  34466789999999753

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.14  Score=24.79  Aligned_cols=31  Identities=13%  Similarity=0.310  Sum_probs=23.4

Q ss_pred             ceeCCCeeEEEEEE---ccCCcceeEEEEEEEec
Q psy12132         95 RRLGPDGYRLVWQV---DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        95 ~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~~  125 (126)
                      .......+.|+|.+   ....++..|.+.||+..
T Consensus        20 ~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~   53 (107)
T d1x5fa1          20 SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEG   53 (107)
T ss_dssp             EEECSSCEEEEEECCSSCSSCCSSEEEEEEEETT
T ss_pred             EEecCCEEEEEEECCccCCCCceEEEEEEEEeCC
Confidence            34567789999987   34567889999998753

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.08  Score=26.11  Aligned_cols=30  Identities=23%  Similarity=0.481  Sum_probs=22.8

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|.|.+  ....++..|.+.|+...
T Consensus        31 ~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~   62 (117)
T d1wfoa1          31 EVRTTSVRLIWQPPAAPNGIILAYQITHRLNT   62 (117)
T ss_dssp             EECSSEEEEECCCCSCCCSCCCEEEEEEEESS
T ss_pred             EecCCEEEEEEECCCCCCCceEEEeeeeeecc
Confidence            4567789999987  23467899999998753

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.06  Score=25.96  Aligned_cols=30  Identities=20%  Similarity=0.458  Sum_probs=22.9

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ......+.|+|.+  ....++..|.+.|++..
T Consensus        21 ~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~   52 (103)
T d1x5ga1          21 AASPTSITVTWETPVSGNGEIQNYKLYYMEKG   52 (103)
T ss_dssp             EEETTEEEEECCCCSCCSSCCSEEEEEEEETT
T ss_pred             EccCCEEEEEEECCcCCCccEEEEEEEEEeCC
Confidence            4566789999986  33467889999998753

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.91  E-value=0.14  Score=25.84  Aligned_cols=29  Identities=14%  Similarity=0.129  Sum_probs=20.9

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..+...-..+.-|||+..|
T Consensus        13 Pg~sl~LsC~~SG~~~s~y~~~W~RQ~pG   41 (119)
T d1kxvc_          13 AGGSLRLSCAASGNTLCTYDMSWYRRAPG   41 (119)
T ss_dssp             TTCCEEEEEEEESCTTCCEEEEEEEECTT
T ss_pred             CCCCeEEEEEEcCCCccCCceeeeeeCCC
Confidence            46688999998766444456778888765

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.19  Score=24.13  Aligned_cols=29  Identities=10%  Similarity=0.176  Sum_probs=22.0

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+  .....++.|.+.||...
T Consensus        18 ~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~   48 (105)
T d2d9qb2          18 PQAGCLQLSWEPWQPGLHINQKCELRHKPQR   48 (105)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESS
T ss_pred             CCCCeEEEEEcCCCCCCceeEEEEEEEEecC
Confidence            356789999998  34466789999999754

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.073  Score=25.06  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+  ....++..|.+.|+...
T Consensus        11 ~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~   42 (93)
T d1x4xa1          11 CRSATCAQVNWEVPLSNGTDVTEYRLEWGGVE   42 (93)
T ss_dssp             EEETTEEEEECCCCSCSSSCCCEEEEEEESST
T ss_pred             EeCCCeEEEEEEecccCCCeeEEEEEEEccCC
Confidence            3456789999987  33467889999998653

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=92.55  E-value=0.026  Score=25.21  Aligned_cols=45  Identities=13%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             CccEEEEEEeeecCCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEE
Q psy12132          8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ   67 (126)
Q Consensus         8 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~   67 (126)
                      .+.+.|.|.      .++.|++++..+.....         .++.+-+.-.+..|.|.|.
T Consensus         8 edkV~L~Cn------~sI~w~k~~~~~~~~~~---------ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           8 EDKVILKCN------SSITLLQGTAGQEVSDN---------KTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             TTEEEEECS------SSCEEEEECCCCBSSSS---------SBBCCBCSTTCCEEEEECC
T ss_pred             CceEEEEcc------CeEEEccCccccccCCC---------cEEeCCCcccCCCcceECC
Confidence            457889993      45899987643322211         1344445566778999994

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.25  E-value=0.1  Score=24.88  Aligned_cols=30  Identities=13%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             eeCCCeeEEEEEE----ccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQV----DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~----~~~~~~~~~~~~~r~~~  125 (126)
                      ......+.|+|..    ....++..|.+.|+...
T Consensus        12 ~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~   45 (101)
T d1x4ya1          12 AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTD   45 (101)
T ss_dssp             CSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTT
T ss_pred             EEcCCEEEEEEecCcccccccceEEEEEEeeecc
Confidence            4567789999985    23368889999998653

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.14  E-value=0.19  Score=25.24  Aligned_cols=29  Identities=7%  Similarity=0.193  Sum_probs=20.7

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|...|..--..+.-|+|+..|
T Consensus        13 PG~sl~LsC~~SG~~~~~y~~~WvRQ~pG   41 (117)
T d1um5h1          13 PGGSVKMSCKASEYTLTSYLFQWVKQKSG   41 (117)
T ss_dssp             TTCCEEEEEEESSCCCSCCEEEEEEECTT
T ss_pred             CCCCEEEEEEEccccCCCCcCccceeCCC
Confidence            57788999998766433456677788765

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.14  Score=24.77  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=21.7

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ...+.+.|+|.+  .++.++..|.+.|+..
T Consensus        22 ~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~   51 (111)
T d1wisa1          22 IGPRSVTLQFRPGYDGKTSISRWLVEAQVG   51 (111)
T ss_dssp             CCSSCEEEEEECCCCCSSCCSEEEEEECBS
T ss_pred             cCCCEEEEEEeCCCCCCCceeEEEEeeeec
Confidence            456789999987  4557888999988753

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.92  E-value=0.11  Score=25.04  Aligned_cols=29  Identities=10%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             eCCCeeEEEEEE----ccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQV----DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~----~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+    ..+.++..|.+.||...
T Consensus        16 ~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~   48 (105)
T d1cfba2          16 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDI   48 (105)
T ss_dssp             SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESS
T ss_pred             ccCCeEEEEEeCCChhhcCceEEEEEEEeeeec
Confidence            456789999986    23468899999998753

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.90  E-value=0.14  Score=25.60  Aligned_cols=29  Identities=14%  Similarity=0.149  Sum_probs=21.1

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|...|..-...+.-|||+..|
T Consensus        14 PG~sl~LsC~~SG~s~~~y~~~W~RQ~PG   42 (115)
T d1f3dh1          14 PGASVKVSCKASGYSFIDYNIHWVKQSHG   42 (115)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEEETT
T ss_pred             CCCCEEEEEEEccccCCCCCcceeEEcCC
Confidence            57789999998766433456778888765

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.26  Score=23.62  Aligned_cols=31  Identities=16%  Similarity=0.455  Sum_probs=23.4

Q ss_pred             ceeCCCeeEEEEEEc----cCCcceeEEEEEEEec
Q psy12132         95 RRLGPDGYRLVWQVD----TYSAIIQYLLKFRERE  125 (126)
Q Consensus        95 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~r~~~  125 (126)
                      .....+.+.|+|.+.    ...++..|.+.|+...
T Consensus        18 ~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~   52 (109)
T d1va9a1          18 QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS   52 (109)
T ss_dssp             EECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESS
T ss_pred             EEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeecc
Confidence            345777899999872    2357889999998763

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.14  Score=24.45  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+  ....++..|.+.|+..
T Consensus        13 ~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~   43 (103)
T d1qg3a2          13 VVSSTVTQLSWAEPAETNGEITAYEVCYGLV   43 (103)
T ss_dssp             EEETTEEEEECCCCSCCSSCCCEEEEEEEEB
T ss_pred             EecCCEEEEEEEECccCCCCceEEEEEeecc
Confidence            4567789999987  4446889999999865

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.64  E-value=0.21  Score=25.08  Aligned_cols=29  Identities=10%  Similarity=0.230  Sum_probs=21.4

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 PG~sl~LsC~~SG~s~s~~~~~WvRQ~PG   42 (117)
T d1mfah1          14 PGASVKMSCKASGYTFTNYWMHWIKQRPG   42 (117)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEEETT
T ss_pred             CCCCEEEEEEEcccCCCCCceEeeeeCCC
Confidence            57789999998776544456668888765

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.63  E-value=0.11  Score=25.51  Aligned_cols=30  Identities=10%  Similarity=0.096  Sum_probs=21.5

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..++.+.|+|...+..-...|..|||+..|
T Consensus        13 ~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~   42 (111)
T d1cd0a_          13 SPGKTVTISCTRSSGNIDSNYVQWYQQRPG   42 (111)
T ss_dssp             CTTSCEEEEEEESSSCGGGSCCEEEEECTT
T ss_pred             CCCCCEEEEEEECCCCccCceEEEeeeccC
Confidence            467899999988655433456788888754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.63  E-value=0.21  Score=25.20  Aligned_cols=30  Identities=17%  Similarity=0.084  Sum_probs=21.9

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 kpg~sl~LsC~~SG~~~~~y~~~WvRQ~PG   43 (122)
T d1vgeh1          14 KPGASVKVSCKASGYSFTSYGLHWVRQAPG   43 (122)
T ss_dssp             CTTCCEEEEEEECSSCGGGSEEEEEEECTT
T ss_pred             CCCCCEEEEEEEcCCCccCCCceeeEeCCC
Confidence            367789999998776544456778888765

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.60  E-value=0.17  Score=25.39  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=22.3

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .++..+.|+|...|..--..+.-|+|+..|
T Consensus        13 kPg~sl~LsC~~SG~~~~~~~~~W~RQ~PG   42 (117)
T d1c5db1          13 QPSQTLSLTCTVSGFPLTTNGVSWVRQPPG   42 (117)
T ss_dssp             CTTSCEEEEEEECSSCTTTCCEEEEEECTT
T ss_pred             CCCCCeEEEEEEcCCCccCCceEcccCCCC
Confidence            467789999999776444456778888765

>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.33  Score=23.18  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             eccCCccEEEEEEee-----ecCCCeeEEEECCEEeccCCcEEEEecC-CeEEEEEecCCCCCCEEEEEEEe
Q psy12132          4 ITAPDMRAEIICNVY-----ANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQAS   69 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~-----~~p~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~   69 (126)
                      .+..|++++-.|.+.     ....+.+.|..++..+..+ +-.....+ ..++.++.+++....- .+|-+.
T Consensus        10 VV~lGsp~tAsC~I~e~C~~~~~a~~I~Wkl~~~~vP~~-rq~~~~~~~~~SsVt~p~l~~~~a~-LtC~v~   79 (94)
T d2d9qb1          10 IVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAF-LSCSLN   79 (94)
T ss_dssp             EECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEE-EEEEEE
T ss_pred             eEeCCCCEEEEEEECccccCcCCcceEEEEECCEECCCc-ceeEEecCcEEEEEEecccccCccc-EEEEEE
Confidence            567899999999874     1234579998887765422 21112222 2457888888765543 445433

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.55  E-value=0.16  Score=25.15  Aligned_cols=29  Identities=10%  Similarity=0.116  Sum_probs=21.2

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 PG~Sl~LsC~~SG~t~~~~~~~WvRQ~PG   42 (109)
T d2ck0h1          14 PRGSLKLSCAASGFTFNTDAMNWVRQAPG   42 (109)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCeEEEEEECCCcccccccccceeCCC
Confidence            56788999998776444456777887765

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.51  E-value=0.2  Score=25.13  Aligned_cols=29  Identities=3%  Similarity=-0.011  Sum_probs=21.7

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 pg~sl~lsC~~SG~~~~~y~~~WvRQ~PG   42 (118)
T d2jelh1          14 PGVSVKISCKGSGYTFTTYAMHWVKQSHA   42 (118)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECSS
T ss_pred             CCCCEEEEEEEcCCCCCCCceecceeCCC
Confidence            56788999998776544456778888765

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.44  E-value=0.16  Score=25.47  Aligned_cols=30  Identities=13%  Similarity=0.102  Sum_probs=21.2

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|+|+..|..-...+.-|||+..|
T Consensus        13 kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PG   42 (117)
T d1iqdb1          13 KPGASVKVSCKVSGYTLTELPVHWVRQAPG   42 (117)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCCEEEEEEEcCCCCCCCCEEEEEECCC
Confidence            357789999998776443455668887765

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.16  Score=23.73  Aligned_cols=29  Identities=17%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|.|.+  ....++..|.+.|+..
T Consensus        11 ~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~   41 (95)
T d2djsa1          11 SATMRSITLSWPQPEQPNGIILDYEIRYYEK   41 (95)
T ss_dssp             EECSSEEEEECCCCSCCSSCEEEEEEEEEET
T ss_pred             eecCCEEEEEEEECCCCCcceEEeeeeeeee
Confidence            4567789999987  3446788999998875

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.29  E-value=0.21  Score=25.42  Aligned_cols=29  Identities=21%  Similarity=0.167  Sum_probs=20.3

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..-...+.-|||+..|
T Consensus        14 pg~sl~LsC~~SG~~~s~y~~~W~RQ~PG   42 (127)
T d1i3ua_          14 AGDSLKLSCEASGDSIGTYVIGWFRQAPG   42 (127)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTT
T ss_pred             CCCCeEEEEEEcCCCCCCCceEeeeeCCc
Confidence            56788999998766444455667887654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.26  E-value=0.22  Score=25.09  Aligned_cols=29  Identities=14%  Similarity=0.150  Sum_probs=20.8

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..+..--..+.-|||+..|
T Consensus        14 pG~sl~LsC~~SG~s~~~~~~~W~RQ~PG   42 (120)
T d1pg7x1          14 PGASVKISCKASGYSFTGHLLNWVKQSHG   42 (120)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTT
T ss_pred             CCCCEEEEEEEccccCCCCCcceeeecCC
Confidence            56788999998766433456778888765

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.14  E-value=0.22  Score=24.95  Aligned_cols=29  Identities=21%  Similarity=0.082  Sum_probs=21.4

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~~~~~~~~~WvRQ~PG   42 (116)
T d7fabh1          14 PSQTLSLTCTVSGTSFDDYYWTWVRQPPG   42 (116)
T ss_dssp             TTSCEEEEEEEESSCSTTSEEEEEEECTT
T ss_pred             CCCCEEEEEEEeeecCCCCcceeceECCC
Confidence            56789999998776444456778888765

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.00  E-value=0.24  Score=24.99  Aligned_cols=29  Identities=10%  Similarity=0.145  Sum_probs=20.6

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|...|..--..+.-|||+..|
T Consensus        14 pG~sv~LsC~~SG~~~s~~~~~W~RQ~PG   42 (121)
T d1j05b_          14 PGASVKLSCTASGFNIKDTYMHWVKQRPE   42 (121)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTT
T ss_pred             CCCCEEEEEEEecCCCCCCCcceeeECCC
Confidence            56788999988665433456677788765

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.00  E-value=0.24  Score=24.83  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 pg~sl~lsC~~SG~~~~~y~~~WvRQ~PG   42 (117)
T d1jnhb1          14 PGASVKLSCRTSGYSFTTYWMQWVRQRPG   42 (117)
T ss_dssp             TTCCEEEEEEEESSCSSSSEEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCCCCceeeeeeCCC
Confidence            57788999999776444456677887765

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.93  E-value=0.19  Score=25.27  Aligned_cols=29  Identities=7%  Similarity=0.086  Sum_probs=20.8

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~~~~~y~~~WvRQ~PG   42 (119)
T d1eapb1          14 PGASVKISCKASGYISTDHAIHWVKQRPE   42 (119)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECSS
T ss_pred             CCCCEEEEEEEccCcccCCCCccceeCCc
Confidence            57788999999776443445667888765

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.35  Score=23.04  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             CCCeeEEEEEEc----cCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQVD----TYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~~----~~~~~~~~~~~~r~~~  125 (126)
                      ..+.+.|+|.+.    ....++.|.+.||...
T Consensus        16 ~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~   47 (104)
T d1n26a3          16 NPRWLSVTWQDPHSWNSSFYRLRFELRYRAER   47 (104)
T ss_dssp             CTTCEEEEEECCTTCCCSSSCEEEEEEEEETT
T ss_pred             CCCEEEEEEEeeeecCCCceeEEEEEEEeeCC
Confidence            345789999972    3456788999998754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=90.86  E-value=0.25  Score=24.78  Aligned_cols=29  Identities=10%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~~~~~~~~~WvRQ~PG   42 (118)
T d1ct8b1          14 PGASVKLSCKTSGFTFSSSYINWLKQKPG   42 (118)
T ss_dssp             TTCCEEEEEEEESSCSTTCEEEEEEECTT
T ss_pred             CCCCEEEEEEEccccCCCCCCcccEECCC
Confidence            56788999998776444456777887765

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.19  Score=24.12  Aligned_cols=30  Identities=13%  Similarity=0.346  Sum_probs=22.2

Q ss_pred             eeCCCeeEEEEEEc--cCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVD--TYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~--~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+.  ....+..|.+.|+...
T Consensus        21 ~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~   52 (106)
T d1wfna1          21 EILDTSLKVSWQEPGEKNGILTGYRISWEEYN   52 (106)
T ss_dssp             SCCSSEEEEECCCCTTCCSCCCEEEEEEEESS
T ss_pred             EecCCEEEEEEECCCCCCCcEEeEEEEEEECC
Confidence            34567899999873  3356889999998753

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.081  Score=25.55  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=22.3

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+  .+..++..|.++|+..
T Consensus        21 ~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~   51 (105)
T d1x3da1          21 NRTKNSLTLQWKAPSDNGSKIQNFVLEWDEG   51 (105)
T ss_dssp             EEETTEEEEECCCCCCCSSCEEEEEEEECTT
T ss_pred             EccCCEEEEEEECCCCCcCccEEEEEEEecC
Confidence            3567789999988  4557888999988753

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.69  E-value=0.27  Score=24.79  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|...|..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~s~s~y~~~WvRQ~PG   42 (121)
T d2p49b1          14 AGGSLRLSCAASGYAYTYIYMGWFRQAPG   42 (121)
T ss_dssp             TTCCEEEEEEEESCSSCCSEEEEEEECTT
T ss_pred             CCCCeEEEEEEcCCCcccCceeeccCCCC
Confidence            56788999998776444456778888765

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.66  E-value=0.21  Score=24.88  Aligned_cols=30  Identities=7%  Similarity=0.006  Sum_probs=21.1

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|+|...|..-...+.-|+|+..|
T Consensus        13 kpG~sl~LsC~~SG~~~s~~~~~WvRQ~PG   42 (114)
T d1indh1          13 KPGGSLKLSCAASGFTLSGETMSWVRQTPE   42 (114)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCCEEEEEEECccCccCCceeccccCCC
Confidence            356788999998766443455678888765

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.63  E-value=0.29  Score=24.64  Aligned_cols=29  Identities=7%  Similarity=0.047  Sum_probs=20.8

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 pG~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (120)
T d1dlfh_          14 PGGSMKLSCATSGFTFSDAWMDWVRQSPE   42 (120)
T ss_dssp             TTCCEEEEEEEESSCTTTCEEEEEEEETT
T ss_pred             CCCCeEEEEEECCccCcCCceEeeeeCCC
Confidence            56788999998766444456678888765

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=90.59  E-value=0.23  Score=25.04  Aligned_cols=29  Identities=21%  Similarity=0.062  Sum_probs=20.8

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|||+..|
T Consensus        14 PG~sl~LsC~~SG~~~~~y~~~W~RQ~PG   42 (120)
T d1dn0b1          14 PSETLSLTCAVYGGSFSDYYWSWIRQPPG   42 (120)
T ss_dssp             TTSCEEEEEEEESSCCSSCCEEEEEECTT
T ss_pred             CCCCEEEEEEEccccCccCcceeeeECCC
Confidence            57788999998776443455678888765

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.46  Score=22.84  Aligned_cols=29  Identities=14%  Similarity=0.036  Sum_probs=18.5

Q ss_pred             CCCCeeccCcceeCCCeeEEEEEEc-cCCc
Q psy12132         85 PNIPVFQKSSRRLGPDGYRLVWQVD-TYSA  113 (126)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  113 (126)
                      |..|.+..+.....++.+.|.|... +.++
T Consensus         3 P~~p~~~~~~~v~~G~~v~L~C~~~~g~p~   32 (110)
T d1f97a2           3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPP   32 (110)
T ss_dssp             CCCCEEECCSEEETTSCEEEEEECSCCBSC
T ss_pred             CccceeCCCCEEecCCeEEEEEEeecCCCC
Confidence            3444444444556788999999985 4433

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=90.43  E-value=0.27  Score=24.67  Aligned_cols=29  Identities=7%  Similarity=-0.009  Sum_probs=21.4

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|...|..-...+.-|+|+..|
T Consensus        14 PG~Sl~LsC~~SG~~~~~y~~~WvRQ~PG   42 (118)
T d1lo4h1          14 PGGSLTLSCEASGFTLRTYGMSWVRQTPQ   42 (118)
T ss_dssp             TTCCEEEEEEEESSCTTTSEEEEEEECTT
T ss_pred             CCCCeEEEEEECCCcccCCCcccccCCCC
Confidence            56788999999776544456778888765

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.41  E-value=0.41  Score=24.11  Aligned_cols=30  Identities=7%  Similarity=0.107  Sum_probs=21.4

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|+|+..|..--..+.-|+|+..|
T Consensus        13 kPG~sl~LsC~~SG~~~~~~~~~WvRQ~PG   42 (121)
T d1nfdf1          13 QPGSSLKVSCAASGFTFSDFWMYWVRQAPG   42 (121)
T ss_dssp             CTTCEEEEEEEEESSCGGGEEEEEEEECTT
T ss_pred             CCCCCEEEEEEEcCCCCcCCceeeceecCC
Confidence            367789999999776544455667887765

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.40  E-value=0.23  Score=24.93  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=20.9

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      +++.+.|+|...|..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~~~s~y~~~WvRQ~PG   42 (118)
T d2fbjh1          14 PGGSLKLSCAASGFDFSKYWMSWVRQAPG   42 (118)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEECCccccCCceeeeeecCC
Confidence            56788999998776443455678888765

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.16  Score=24.83  Aligned_cols=27  Identities=7%  Similarity=0.153  Sum_probs=20.7

Q ss_pred             CCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         98 GPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        98 ~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ..+.+.|+|.+  ..+.++..|.+.|+..
T Consensus        32 ~~~si~v~W~~p~~~~g~i~~Y~i~~~~~   60 (113)
T d1x5ia1          32 LVTSIVVSWTPPENQNIVVRGYAIGYGIG   60 (113)
T ss_dssp             ETTEEEEEEECCSCTTBCCCEEEEEECSS
T ss_pred             CCCEEEEEEEccccCCccEEEEEEEeeec
Confidence            35689999997  3346788999999764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.36  E-value=0.24  Score=24.79  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|++.|
T Consensus        14 Pg~sl~LsC~~SG~s~~~~~~~WvRQ~PG   42 (116)
T d1mjuh1          14 PGASVKLSCKASGYTFTNYWINWVKQRPG   42 (116)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEEccCccccCceEeeeeCCC
Confidence            56788999999776444456677787765

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.36  Score=22.36  Aligned_cols=29  Identities=10%  Similarity=0.231  Sum_probs=21.8

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+.. .++..|.+.|+...
T Consensus        12 ~~~~~si~v~W~~p~-~~~~~Y~i~~~~~~   40 (90)
T d1fnha2          12 DATETTITISWRTKT-ETITGFQVDAVPAN   40 (90)
T ss_dssp             EECSSEEEEEEECCS-SCCCCEEEEEEESS
T ss_pred             EecCCEEEEEEECCC-CCCceeEEEEEEcc
Confidence            456778999998643 46788999998754

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.24  E-value=0.24  Score=24.90  Aligned_cols=29  Identities=14%  Similarity=0.194  Sum_probs=21.0

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~WvRQ~PG   42 (119)
T d1rz7h1          14 PGATVKISCKASGYTFSDFYMYWVRQAPG   42 (119)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCcCCceEccccCCc
Confidence            56788999998776544455677788765

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=90.05  E-value=0.33  Score=24.28  Aligned_cols=29  Identities=14%  Similarity=0.080  Sum_probs=21.1

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|...|..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (116)
T d1a2yb_          14 PSQSLSITCTVSGFSLTGYGVNWVRQPPG   42 (116)
T ss_dssp             TTSCEEEEEEEESSCTTSSEEEEEEECTT
T ss_pred             CCCCeEEEEEEcccccCCCCCccceECCC
Confidence            57788999998776433456778888765

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.34  Score=23.20  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      .....+.|+|.+  ....++..|.+.|+..
T Consensus        25 ~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~   54 (111)
T d1x5ka1          25 GKPKTIIVNWQPPSEANGKITGYIIYYSTD   54 (111)
T ss_dssp             SCTTCEEEEEECCSCCSSCCCEEEEEEESC
T ss_pred             CCCCEEEEEEEccccCCCceeeeEEeeeec
Confidence            345689999987  3346788999998764

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.16  Score=24.12  Aligned_cols=27  Identities=19%  Similarity=0.394  Sum_probs=16.5

Q ss_pred             CCCeeEEEEEEc---cCCcceeEEEEEEEe
Q psy12132         98 GPDGYRLVWQVD---TYSAIIQYLLKFRER  124 (126)
Q Consensus        98 ~~~~~~l~~~~~---~~~~~~~~~~~~r~~  124 (126)
                      ..+.+.|+|...   .......|.++|+..
T Consensus        16 ~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~   45 (100)
T d2gysa4          16 DGDSYSLRWETMKMRYEHIDHTFEIQYRKD   45 (100)
T ss_dssp             --CCCEEEEEC--------CEEEEEEEECS
T ss_pred             CCCEEEEEEecCcccCCccceEEEEEEeec
Confidence            446789999762   224456899999864

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=89.81  E-value=0.23  Score=24.96  Aligned_cols=30  Identities=23%  Similarity=0.191  Sum_probs=19.8

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|+|...+..--..+.-|||+..|
T Consensus        14 ~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg   43 (123)
T d1hxmb1          14 TLSKTARLECVVSGITISATSVYWYRERPG   43 (123)
T ss_dssp             ETTCCEEEEEEEESSCTTTSCEEEEEECTT
T ss_pred             CCCCCEEEEEEEcCCCcccCeEEEEEECCC
Confidence            457788999988654322235678888754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=89.80  E-value=0.28  Score=24.62  Aligned_cols=30  Identities=7%  Similarity=0.034  Sum_probs=20.7

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .++..+.|+|+..|..--..+.-|+|+..|
T Consensus        13 kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (118)
T d1nlbh1          13 KPGETVKISCKASGYTFTDFSMHWVNQAPG   42 (118)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCCEEEEEEEcCCCCCCCceeccccCCC
Confidence            356788999998776433345667787765

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.56  Score=22.71  Aligned_cols=63  Identities=8%  Similarity=0.077  Sum_probs=42.0

Q ss_pred             eccCCccEEEEEEeeec-------CCCeeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEE
Q psy12132          4 ITAPDMRAEIICNVYAN-------PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA   68 (126)
Q Consensus         4 ~~~~g~~~~l~C~~~~~-------p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~   68 (126)
                      .+..|++++..|.+...       ....+.|..+++.+.. +.++... +...++++.+++....-.+-|..
T Consensus        14 vv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~-~qy~~ln-~T~~Svtl~~l~~~~a~L~C~~l   83 (100)
T d1i1ra1          14 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK-EQYTIIN-RTASSVTFTDIASLNIQLTCNIL   83 (100)
T ss_dssp             EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCG-GGCEEEE-TTEEEEEECSCCCSEEEEEEEEE
T ss_pred             eEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCc-hheEccC-CcEEEEEEccccCCcceeEEEEe
Confidence            46779999999999622       2358999999988765 3444333 33457888888765554444333

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.69  E-value=0.23  Score=24.94  Aligned_cols=29  Identities=7%  Similarity=0.130  Sum_probs=19.6

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|...+..--..+.-|||+..|
T Consensus        14 pG~Sv~LsC~~SG~s~~~y~~~WyRQ~PG   42 (119)
T d1qnzh_          14 PGASVKMSCKASGYTFTTYPIEWMKQNHG   42 (119)
T ss_dssp             TTEEEEEEEEEETCCSSSSCEEEEEEETT
T ss_pred             CCCCEEEEEEEeccCCCCCCcceeeecCC
Confidence            56788999988665322345678888765

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.68  E-value=0.28  Score=24.79  Aligned_cols=29  Identities=7%  Similarity=0.009  Sum_probs=20.4

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (123)
T d1mqkh_          14 PGGSLKLSCAASGFTFSSYTMSWVRQTPE   42 (123)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEECcccCcCCceEeeecCCC
Confidence            57789999998766433345667788765

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.38  E-value=0.3  Score=24.77  Aligned_cols=29  Identities=10%  Similarity=0.197  Sum_probs=21.1

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~~~~~y~~~WvRQ~pG   42 (125)
T d1rihh1          14 PGASMKMSCRASGYSFTSYWIHWLKQRPD   42 (125)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEEccCCCCCCCCccccCCCC
Confidence            56788999998776544456778887765

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.38  E-value=0.2  Score=25.11  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=21.1

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|++.|..-...+.-|+|++.|
T Consensus        14 Pg~sl~LsC~~SG~~~~~y~~~WvRQ~PG   42 (116)
T d1fn4b1          14 PSETLSLTCTVSGFSLTSFSVSWVRHPSG   42 (116)
T ss_dssp             TTSEECCEEECCSSCTTSSEEEEEEEETT
T ss_pred             CCCCeEEEEEEeCcccccCccceeeECCC
Confidence            56788999999776443456678888765

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.37  E-value=0.3  Score=24.77  Aligned_cols=29  Identities=14%  Similarity=0.072  Sum_probs=20.6

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~~~~~y~~~WvRQ~PG   42 (126)
T d1dfbh1          14 PGRSLRLSCAASGFTFNDYAMHWVRQAPG   42 (126)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCeEEEEEECCccccCCcceeceeCCC
Confidence            56688999998776544445668888765

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.16  E-value=0.32  Score=24.55  Aligned_cols=29  Identities=7%  Similarity=-0.059  Sum_probs=20.6

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..+..--..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~s~s~y~~~WvRQ~PG   42 (122)
T d1bz7b1          14 PGGSRKLSCAASGFTFSNFGMHWVRQAPE   42 (122)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECSS
T ss_pred             CCCCeEEEEEEcCCCCcCCceEccccCCC
Confidence            56788999998766433455677887765

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.12  E-value=0.33  Score=24.59  Aligned_cols=29  Identities=17%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~W~RQ~PG   42 (124)
T d2b1hh1          14 SGESLKISCQTSGYSFSDYWIGWVRQMPG   42 (124)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCcCCcCccceeCCC
Confidence            56788999999776544445677787765

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=89.11  E-value=0.31  Score=25.04  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=20.3

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 PG~Sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (135)
T d1ieha_          14 PGGSLRVSCAASGFTFSSYHMAWVRQAPG   42 (135)
T ss_dssp             TTCEEEEEEEEESSCTTTSCEEEEEECSS
T ss_pred             CCCCeEEEEEEcCCCCcCCceeccccCCC
Confidence            56788999998765433345777887765

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.10  E-value=0.35  Score=24.47  Aligned_cols=29  Identities=10%  Similarity=0.184  Sum_probs=20.8

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 PG~sl~LsC~~SG~~~~~y~~~WvRQ~PG   42 (124)
T d1yedb1          14 PGTSVKLSCKTSGYIFTSYWIHWLKQSSG   42 (124)
T ss_dssp             TTCEEEEEEEEESSCGGGSCEEEEEECSS
T ss_pred             CCCCEEEEEEEcCCCccCCccccceECCC
Confidence            56788999998776444455677888765

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.58  Score=22.11  Aligned_cols=29  Identities=14%  Similarity=0.179  Sum_probs=20.6

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ....+.+.|+|.+.. .++..|.+.|+...
T Consensus        11 ~~t~~si~l~W~~p~-~~i~~Y~v~~~~~~   39 (102)
T d2cuha1          11 NLTEGFAVLHWKPPQ-NPVDTYDIQVTAPG   39 (102)
T ss_dssp             CCSSSCEEEEEECCS-SCCSEEEEEEECSS
T ss_pred             EeCCCEEEEEEEeee-ccceeeEEEEEecc
Confidence            345678899998732 45678999987653

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.24  Score=24.31  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             eeCCCeeEEEEEEc----cCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQVD----TYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~~----~~~~~~~~~~~~r~~  124 (126)
                      ......+.|+|.+.    ....+..|.+.|+..
T Consensus        22 ~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~   54 (119)
T d1x5ha1          22 VRNSKSIMIHWQPPAPATQNGQITGYKIRYRKA   54 (119)
T ss_dssp             CCSSSEEEEEEECCCTTTCCSCEEEEBCEEEET
T ss_pred             EecCcEEEEEEEcccccCCCCCEEEEEEEEeec
Confidence            34567899999862    225788999999874

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=88.92  E-value=0.35  Score=24.42  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=20.2

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..+..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (122)
T d1q9rb1          14 SGGSLRLSCATSGFTFTDYYMSWVRQPPG   42 (122)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCcCCccCccccCCC
Confidence            56788999998766433345668888765

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=88.87  E-value=0.34  Score=24.61  Aligned_cols=29  Identities=14%  Similarity=0.083  Sum_probs=21.1

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~WvRQ~PG   42 (127)
T d2fb4h1          14 PGRSLRLSCSSSGFIFSSYAMYWVRQAPG   42 (127)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCeEEEEEECCCCccCCceeeeecCCC
Confidence            56688999998776544456678888765

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.42  Score=22.51  Aligned_cols=25  Identities=4%  Similarity=0.244  Sum_probs=16.7

Q ss_pred             CeeEEEEEEccC------CcceeEEEEEEEe
Q psy12132        100 DGYRLVWQVDTY------SAIIQYLLKFRER  124 (126)
Q Consensus       100 ~~~~l~~~~~~~------~~~~~~~~~~r~~  124 (126)
                      ..+.|+|.....      .-.+.|.+.||..
T Consensus        17 ~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~   47 (94)
T d3d85d3          17 RQVEVSWEYPDTWSTPHSYFSLTFCVQVQGK   47 (94)
T ss_dssp             -CEEEEEECCTTSCSCTTTSCEEEEEEEECC
T ss_pred             CeEEEEecCCCCcCCCCCeEEEEEEEEEEEC
Confidence            458899988332      1257899999864

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.81  E-value=0.62  Score=22.02  Aligned_cols=28  Identities=14%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             CCCeeEEEEEEcc------CCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQVDT------YSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~~~------~~~~~~~~~~~r~~~  125 (126)
                      ....+.|+|.+..      ...++.|.+.|+...
T Consensus        19 ~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~   52 (103)
T d1f6fb2          19 KKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEE   52 (103)
T ss_dssp             CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESS
T ss_pred             CCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCC
Confidence            4556899998832      235678999998753

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.80  E-value=0.36  Score=24.34  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=20.0

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~s~s~y~~~W~RQ~PG   42 (121)
T d1ol0a_          14 PGGSLRLSCAASGFTFSSYAMSWFRQAPG   42 (121)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCeEEEEEEcCcCCcCCceEcceeCCC
Confidence            56788999998766433345667787765

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.57  Score=21.54  Aligned_cols=28  Identities=11%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus        13 ~s~~s~~l~W~~p~-~~~~~y~v~~~~~~   40 (90)
T d1tena_          13 VTDTTALITWFKPL-AEIDGIELTYGIKD   40 (90)
T ss_dssp             CCSSCEEEEEECCS-SCCSEEEEEEEETT
T ss_pred             ecCCEEEEEEEeCc-eEeccEEEEEEEcC
Confidence            45678899998743 45778999988754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.73  E-value=0.48  Score=23.68  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=20.5

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~~~~~y~~~WvRQ~PG   42 (117)
T d1jpth1          14 PGGSLRLSCAASGFNIKEYYMHWVRQAPG   42 (117)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCcCCceEcceeCCC
Confidence            56688999998776444455677777654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=88.69  E-value=0.44  Score=23.42  Aligned_cols=30  Identities=10%  Similarity=0.092  Sum_probs=19.9

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|.|...+..-...+..|||+..|
T Consensus        12 ~~G~svtl~C~~s~~s~~~~~i~WYrq~~g   41 (112)
T d1sq2n_          12 ETGESLTINCVLRDASYALGSTCWYRKKSG   41 (112)
T ss_dssp             CTTCCEEEEEEECSCSSCCCCEEEEEEETT
T ss_pred             cCCCCEEEEEEECCCcccCCceEEEEeecc
Confidence            467789999987443222345678888765

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=88.67  E-value=0.56  Score=23.55  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=19.6

Q ss_pred             CCCeeEEEEEEccCCc--ceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSA--IIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~--~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..-  -..+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PG   44 (120)
T d1ai1h1          14 PSQSLSLTCIVSGFSITRTNYCWHWIRQAPG   44 (120)
T ss_dssp             SSSCEEEEEEEESSCTTSTTEEEEEEEECTT
T ss_pred             CCCCEEEEEEEcccccccCccccCcccCCCc
Confidence            5678999999876532  2234568888765

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=88.59  E-value=0.3  Score=23.94  Aligned_cols=30  Identities=3%  Similarity=-0.108  Sum_probs=20.1

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..++.+.|+|...+..--..+..|||+..|
T Consensus        13 ~~G~svtl~C~~s~~~~~~~~~~WYrq~~g   42 (111)
T d1rzfl1          13 APGQKVTISCSGSSSNIGNNDVSWYQQFPG   42 (111)
T ss_dssp             CTTSCEEEEEECCCCCCCTSCEEEEEECTT
T ss_pred             CCCCCEEEEEEECCcCCcCCcccceeeecc
Confidence            468899999987543222345678888654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=88.45  E-value=0.54  Score=23.05  Aligned_cols=30  Identities=10%  Similarity=0.008  Sum_probs=19.5

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|+|...+..-...+..|||+..|
T Consensus        13 ~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g   42 (113)
T d1vesa_          13 ETGESLTINCVLRDASFELKDTGWYRTKLG   42 (113)
T ss_dssp             CTTCCEEEEEEEESCSSCCCEEEEEEEETT
T ss_pred             cCCCCEEEEEEECCCcccCCccceeeeecc
Confidence            467889999988543222335668887654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.36  E-value=0.52  Score=23.66  Aligned_cols=29  Identities=14%  Similarity=0.216  Sum_probs=20.9

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..+..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~vSG~s~~~~~~~WvRQ~PG   42 (120)
T d1ad9b1          14 PGSSVKVSCKASGYTFTDYYINWMRQAPG   42 (120)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCcCCccccceECCC
Confidence            56688999998776544456777787765

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=88.24  E-value=0.74  Score=22.20  Aligned_cols=28  Identities=11%  Similarity=0.138  Sum_probs=20.1

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..++.+.|+|.....  ...+..|||+..|
T Consensus        12 ~~G~~vtl~C~~~~~--~~~~~~WYrq~pg   39 (110)
T d1u3ha1          12 WEGETAILNCSYENS--AFDYFPWYQQFPG   39 (110)
T ss_dssp             ETTSCEEEEEEECCT--TEEEEEEEEECTT
T ss_pred             cCCCCEEEEEEecCC--CCcEEEEEeeccc
Confidence            468899999987543  2356788888654

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.79  Score=22.51  Aligned_cols=28  Identities=4%  Similarity=-0.096  Sum_probs=18.4

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      .+..+.|.|...+..-...+.+||++..
T Consensus        14 ~g~svtL~C~~s~~~~~~~~~~w~~q~~   41 (118)
T d1yjdc1          14 YDNAVNLSCKYSYNLFSREFRASLHKGL   41 (118)
T ss_dssp             BTTBEEEEEEESCCSSCSEEEEEEEEST
T ss_pred             CCCCEEEEEEEecCCCCccEEEEEEECC
Confidence            4667899998854433345667777654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.19  E-value=0.68  Score=23.52  Aligned_cols=29  Identities=10%  Similarity=0.045  Sum_probs=20.7

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (128)
T d2nxyd1          14 PGSSVKVSCKASGDTFIRYSFTWVRQAPG   42 (128)
T ss_dssp             TTCCEEEEEEEESSCGGGEEEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCccCCCcccceeCCC
Confidence            56688999999776544455677777765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.43  Score=22.96  Aligned_cols=26  Identities=15%  Similarity=-0.045  Sum_probs=16.8

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEE
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFR  122 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r  122 (126)
                      ..|..+.|+|.+.|..|.....+.|.
T Consensus        17 ~~G~~~~L~C~v~g~~P~p~~~v~W~   42 (103)
T d1iama1          17 PVGKQLTLRCQVEGGAPRAQLTVVLL   42 (103)
T ss_dssp             CTTSEEEEEEEEECCBCGGGEEEEEE
T ss_pred             eCCCEEEEEEEecCCCCCCceEEEEc
Confidence            46889999999987644333333333

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.13  E-value=0.54  Score=21.49  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      .....+.|+|.+.. ..+..|.+.|+...
T Consensus        12 ~~~~s~~l~W~~p~-~~~~~Y~v~~~~~~   39 (86)
T d1tdqa3          12 SSETSISLIWTKAS-GPIDHYRITFTPSS   39 (86)
T ss_dssp             ECSSCEEEEEECCC-SCCSEEEEEEECSS
T ss_pred             ecCCEEEEEEeCCC-CCccceEEEEeccc
Confidence            45667899998843 45678999988654

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.043  Score=27.49  Aligned_cols=31  Identities=19%  Similarity=0.413  Sum_probs=23.2

Q ss_pred             cceeCCCeeEEEEEEc---cCCcceeEEEEEEEe
Q psy12132         94 SRRLGPDGYRLVWQVD---TYSAIIQYLLKFRER  124 (126)
Q Consensus        94 ~~~~~~~~~~l~~~~~---~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.+.|+|.+.   ....++.|.+.||..
T Consensus        10 ~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~   43 (125)
T d2dtge3          10 YIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEA   43 (125)
T ss_dssp             EEEECSSCEEEECCCCCSSSCCCEEEECCCSSSC
T ss_pred             EEEecCCEEEEEEeCCCccCCCcEEEEEEEEEEC
Confidence            4456788999999872   235688999988764

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.01  E-value=0.43  Score=24.18  Aligned_cols=29  Identities=14%  Similarity=0.103  Sum_probs=20.2

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..+..--..+.-|+|+..|
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~WvRQ~PG   42 (125)
T d1op3h1          14 AGGSLILSCGVSNFRISAHTMNWVRRVPG   42 (125)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCeEEEEeECCccCcCcccCccccCCC
Confidence            56678999998766443455677887765

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.94  E-value=0.43  Score=24.22  Aligned_cols=29  Identities=14%  Similarity=0.082  Sum_probs=21.0

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..-...+.-|+|++.|
T Consensus        14 pg~sl~lsC~~SG~~~~~y~~~WvRQ~PG   42 (127)
T d1n0xh1          14 PGASVKVSCQASGYRFSNFVIHWVRQAPG   42 (127)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCCCCCEEEEEeCCC
Confidence            56788999999776544456677787765

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=87.77  E-value=0.65  Score=23.08  Aligned_cols=30  Identities=13%  Similarity=-0.010  Sum_probs=19.8

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..+..+.|+|...+..--..+.-|||+..|
T Consensus        14 ~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg   43 (120)
T d1hxma1          14 SIGVPATLRCSMKGEAIGNYYINWYRKTQG   43 (120)
T ss_dssp             ETTCCEEEEEEECSSCGGGSEEEEEEEESS
T ss_pred             CCCCCEEEEEEEeccCccCCcCeEEEcccc
Confidence            467889999988644322235667887654

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=87.70  E-value=0.45  Score=24.31  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|...+..-...+.-|+|++.|
T Consensus        14 pg~sl~LsC~~SG~s~s~~~~~WvRQ~PG   42 (131)
T d3c2ah1          14 PGGSLRLTCVASGFTFSDVWLNWVRQAPG   42 (131)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             CCCCeEEEEEECCCCCcCCcccccccCCC
Confidence            56678999988776544455667787765

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.55  E-value=0.67  Score=23.25  Aligned_cols=29  Identities=14%  Similarity=0.090  Sum_probs=19.1

Q ss_pred             CCCeeEEEEEEccCC--cceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYS--AIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~--~~~~~~~~~r~~~g  126 (126)
                      ++..+.|+|+..|..  ....+.-|||+..|
T Consensus        14 PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg   44 (120)
T d2agjh1          14 PTQTLTLTCTFSGFSLTTTGEGVGWIRQPPG   44 (120)
T ss_dssp             SSSEEEEEEEEESCCTTSSSCEEEEEEECTT
T ss_pred             CCCCEEEEEEEcccCccCCCCeEeecccccc
Confidence            467899999886542  11235668888764

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.58  Score=22.81  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             eCCCeeEEEEEE----ccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQV----DTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~----~~~~~~~~~~~~~r~~~  125 (126)
                      .....+.|+|.+    ....++..|.+.|+...
T Consensus        29 ~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~   61 (117)
T d1wj3a_          29 ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS   61 (117)
T ss_dssp             EETTEEEEECCCCCCCSSSCCEEEEEEEEEESS
T ss_pred             ecCCEEEEEEeecccccCCCceeEEEEEEEecC
Confidence            456789999975    23357889999998753

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.49  Score=24.67  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=22.5

Q ss_pred             eeCCCeeEEEEEEc--cCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVD--TYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~--~~~~~~~~~~~~r~~~  125 (126)
                      ..+...+.|+|.+.  .+..+..|.+.|+...
T Consensus        13 ~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~   44 (196)
T d2dtge2          13 SNSSSQIILKWKPPSDPNGNITHYLVFWERQA   44 (196)
T ss_dssp             ECSSSCEEEEEECCCCSSSSCSEEECCEEEEC
T ss_pred             eccCCEEEEEEECCCCCCCcEEEEEEEEEcCC
Confidence            34677899999983  2357889999998753

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=87.43  E-value=0.29  Score=24.23  Aligned_cols=30  Identities=3%  Similarity=-0.036  Sum_probs=19.8

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..++.+.|.|...+..--..+..|||+..|
T Consensus        13 ~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g   42 (114)
T d2rhea_          13 TPGQRVTISCTGSATDIGSNSVIWYQQVPG   42 (114)
T ss_dssp             CTTCCEEEEEECCTTTTTTSCEEEEECCTT
T ss_pred             CCCCCEEEEEEECCccccCCcccceeeecc
Confidence            358899999987543222245678888754

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.42  E-value=0.41  Score=22.52  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=21.5

Q ss_pred             cceeCCCeeEEEEEE---ccCCcceeEEEEEEEe
Q psy12132         94 SRRLGPDGYRLVWQV---DTYSAIIQYLLKFRER  124 (126)
Q Consensus        94 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~r~~  124 (126)
                      ........+.|+|.+   .....++.|.+.|+..
T Consensus        11 ~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~   44 (94)
T d1x5aa1          11 LVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ   44 (94)
T ss_dssp             EEEEETTEEEEECCCCCSSCCSSCCEEEEEEECS
T ss_pred             EEEcCCCEEEEEEecccCCCCCcEEEEEEEEecC
Confidence            334567789999976   2335567888888764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.36  Score=22.93  Aligned_cols=26  Identities=15%  Similarity=-0.018  Sum_probs=15.9

Q ss_pred             CeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         88 PVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      +.+........++.+.|.|...++.|
T Consensus         6 p~~~~~~~v~~G~~v~l~C~~~~g~p   31 (104)
T d1nbqa2           6 PTVNIPSSATIGNRAVLTCSEQDGSP   31 (104)
T ss_dssp             CCCCCBSEEETTSCEEECCCCCSCBS
T ss_pred             cccCCCCEEecCCcEEEEEEeecCCC
Confidence            33333334457889999998854333

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.03  E-value=0.72  Score=21.50  Aligned_cols=29  Identities=14%  Similarity=0.045  Sum_probs=20.2

Q ss_pred             eCCCeeEEEEEEccC-CcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTY-SAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~-~~~~~~~~~~r~~~  125 (126)
                      .....+.++|.+... ...+.|.+.|+...
T Consensus        15 ~~~~si~~~W~p~~~~~~~~~y~v~~~~~~   44 (95)
T d1bqua1          15 NEGKKMRCEWDGGRETHLETNFTLKSEWAT   44 (95)
T ss_dssp             ETTSCCEEEEECCSCCSSCCEEEEEEEETT
T ss_pred             ccCCEEEEEEeCcccCCCceEEEEEEEEcc
Confidence            456789999988322 23468999998753

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=0.88  Score=22.38  Aligned_cols=29  Identities=17%  Similarity=0.465  Sum_probs=21.6

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+  ....++..|.+.|+..
T Consensus        27 ~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~   57 (127)
T d1ueya_          27 DQLDKSVQLSWTPGDDNNSPITKFIIEYEDA   57 (127)
T ss_dssp             CCSSSCEEEEEECCCCCSSCEEEEEEEEEBT
T ss_pred             EecCCeEEEEEeCCcccccceEeeeeeeccc
Confidence            3466789999987  3346778888888764

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=86.90  E-value=0.52  Score=24.02  Aligned_cols=29  Identities=7%  Similarity=-0.054  Sum_probs=20.2

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..+..-...+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~~~s~y~~~WvRQ~PG   42 (130)
T d1rzga1          14 PGSSVKVSCKASGGTFSNYAINWVRQAPG   42 (130)
T ss_dssp             TTCCEEEEEECCSSCGGGCCEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCCCCceEccccCCC
Confidence            56688999998766444455677777654

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.28  Score=23.35  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             eCCCeeEEEEEE---ccCCcceeEEEEEEEe
Q psy12132         97 LGPDGYRLVWQV---DTYSAIIQYLLKFRER  124 (126)
Q Consensus        97 ~~~~~~~l~~~~---~~~~~~~~~~~~~r~~  124 (126)
                      ...+.+.|+|.+   .++.++..|.+.++..
T Consensus        14 ~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~   44 (104)
T d1bpva_          14 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDL   44 (104)
T ss_dssp             EETTEEEEECCCCSCCTTCCCSCCEEEEEET
T ss_pred             ecCCEEEEEEEeccccCcceEEEEEEEeecc
Confidence            456789999986   3346788888888764

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.81  Score=21.01  Aligned_cols=29  Identities=14%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ......+.|+|.+.. ..+..|.+.|+...
T Consensus        12 ~~s~~si~l~W~~p~-~~~~~Y~i~y~~~~   40 (92)
T d1qg3a1          12 AAGSRKIHFNWLPPS-GKPMGYRVKYWIQG   40 (92)
T ss_dssp             ECSTTCEEEEEECCS-SCCCEEEEEEEETT
T ss_pred             EccCCEEEEEEEecC-CCccceEEeeeecc
Confidence            346778999998843 35678999998653

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.63  E-value=0.92  Score=21.57  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=17.8

Q ss_pred             eCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         97 LGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        97 ~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ...+.+.++|.+  +++.+ +.|.+.|+..
T Consensus        17 ~~~~sv~~sW~p~~d~~~~-~~y~~~y~~~   45 (107)
T d1cd9b1          17 LTTNSLVCQWEPGPETHLP-TSFILKSFRS   45 (107)
T ss_dssp             TTTTEEEEEEECCSCCSSC-CEEEEEEEEC
T ss_pred             cCCCEEEEEEcCCCCCCCC-cceeEEEEEe
Confidence            355689999988  33444 5677777654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=86.60  E-value=0.61  Score=23.20  Aligned_cols=30  Identities=10%  Similarity=-0.013  Sum_probs=19.3

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      ..++.+.|.|...+..--..+.-|||+..|
T Consensus        14 ~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg   43 (120)
T d1ypzf1          14 PRDETAQISCKVFIESFRSVTIHWYRQKPN   43 (120)
T ss_dssp             ETTSCEEEEEEECCGGGGGCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEecccccCCcccEEEeCCc
Confidence            467889999987443211234568888765

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=0.67  Score=21.22  Aligned_cols=28  Identities=11%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus        12 vt~~sv~l~W~~p~-~~~~~Y~i~~~~~~   39 (89)
T d1fnfa3          12 ITANSFTVHWIAPR-ATITGYRIRHHPEH   39 (89)
T ss_dssp             CCSSEEEEEEECCS-SCCSEEEEEEECSC
T ss_pred             ecCCEEEEEEEeCC-CEEeeEEEEEEECC
Confidence            45678899998743 45678888887643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=85.63  E-value=0.63  Score=23.62  Aligned_cols=29  Identities=14%  Similarity=-0.030  Sum_probs=19.5

Q ss_pred             CCCeeEEEEEEccCCcceeEEEEEEEecC
Q psy12132         98 GPDGYRLVWQVDTYSAIIQYLLKFREREG  126 (126)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~g  126 (126)
                      .+..+.|+|+..|..-...+.-|+|+..|
T Consensus        14 Pg~sl~LsC~~SG~s~~~y~~~WvRQ~PG   42 (127)
T d2fx7h1          14 PGSSVTVSCKASGGSFSTYALSWVRQAPG   42 (127)
T ss_dssp             TTCCEEEEEEEESSCSTTSCEEEEEECTT
T ss_pred             CCCCEEEEEEEcCCCCCCCCeEEEEeCCC
Confidence            46688999998766433344667777655

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=1  Score=21.09  Aligned_cols=27  Identities=11%  Similarity=0.171  Sum_probs=17.2

Q ss_pred             CCCeeEEEEEEcc------CCcceeEEEEEEEe
Q psy12132         98 GPDGYRLVWQVDT------YSAIIQYLLKFRER  124 (126)
Q Consensus        98 ~~~~~~l~~~~~~------~~~~~~~~~~~r~~  124 (126)
                      ..+.+.|+|.+..      ...++.|.+.|+..
T Consensus        19 ~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~   51 (104)
T d3d48r2          19 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPE   51 (104)
T ss_dssp             --CCEEEEEECCTTCCCTTSSCCEEEEEEEEET
T ss_pred             CCCeEEEEEeCCccccCCCCcEEEEEeeccccc
Confidence            4556899998732      23456788888764

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=1  Score=21.70  Aligned_cols=26  Identities=12%  Similarity=-0.009  Sum_probs=16.6

Q ss_pred             CeeccCcceeCCCeeEEEEEEccCCc
Q psy12132         88 PVFQKSSRRLGPDGYRLVWQVDTYSA  113 (126)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~  113 (126)
                      |.+.....-..+..+.|+|.+.+..|
T Consensus         5 P~I~~~~~l~~G~~~~l~C~v~~~~P   30 (109)
T d1vcaa1           5 PEIHLSGPLEAGKPITVKCSVADVYP   30 (109)
T ss_dssp             CEEEESSCEETTSCEEEEEEEEEEBS
T ss_pred             CEEecCCCccCCCeEEEEeEeCCcCC
Confidence            44333333457888999999966544

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.72  Score=21.06  Aligned_cols=28  Identities=21%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus        12 ~~~~s~~l~W~~p~-~~i~~Y~i~~~~~~   39 (89)
T d1fnha3          12 TTPNSLLVSWQPPR-ARITGYIIKYEKPG   39 (89)
T ss_dssp             EETTEEEEEEECCS-SCCSEEEEEEECTT
T ss_pred             ecCCEEEEEEeCCC-cCCceEEEEEeecc
Confidence            45668899998743 45778999988643

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=0.72  Score=21.31  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=20.0

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus        13 ~~~~sv~l~W~~p~-~~~~~Y~v~~~~~~   40 (93)
T d2cuma1          13 VTPRTALLTWTEPP-VRPAGYLLSFHTPG   40 (93)
T ss_dssp             CCSSCEEEEEECCS-SCCSEEEEEEECTT
T ss_pred             eCCCEEEEEEEccc-cccccEEEEEEccc
Confidence            35668899998743 35678999888653

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.65  E-value=1.1  Score=20.49  Aligned_cols=28  Identities=11%  Similarity=0.252  Sum_probs=19.9

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus        12 ~~~~sv~v~W~~p~-~~~~~y~v~y~~~~   39 (92)
T d1tdqa2          12 RTATSLDLEWDNSE-AEAQEYKVVYSTLA   39 (92)
T ss_dssp             ECSSCEEEEEECCS-SCCSEEEEEEEETT
T ss_pred             ecCCEEEEEEEecC-CcccceEEEEEEcC
Confidence            45667889998743 35678888888653

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.60  E-value=0.76  Score=21.05  Aligned_cols=28  Identities=11%  Similarity=0.268  Sum_probs=20.6

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus        12 v~~~s~~l~W~~~~-~~~~~Y~i~~~~~~   39 (88)
T d1qr4a2          12 ITENSATVSWTPPR-SRVDSYRVSYVPIT   39 (88)
T ss_dssp             CCSSCEEEEECCCS-SCCSEEEEEEEETT
T ss_pred             ecCCEEEEEEEccc-EeeceEEEEEEecc
Confidence            35667899998743 45778999998754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.88  E-value=1.2  Score=21.41  Aligned_cols=28  Identities=7%  Similarity=0.027  Sum_probs=18.0

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      ...+..+.|.|...+.+......+.|.+
T Consensus        12 v~~G~~v~l~C~v~g~p~~~~p~v~W~k   39 (113)
T d2dava1          12 VKVGEDITFIAKVKAEDLLRKPTIKWFK   39 (113)
T ss_dssp             EETTCCEEEEEEEECCCSSSCCEEEEEE
T ss_pred             EeCCCEEEEEEEEccCCCCCCCEEEEEE
Confidence            3567889999998877644333444443

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.59  Score=21.61  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=17.3

Q ss_pred             eCCCeeEEEEEE---ccCCcceeEEEEEEE
Q psy12132         97 LGPDGYRLVWQV---DTYSAIIQYLLKFRE  123 (126)
Q Consensus        97 ~~~~~~~l~~~~---~~~~~~~~~~~~~r~  123 (126)
                      ...+.+.|+|..   .+..++..|.+.++.
T Consensus        12 ~~~~si~l~W~~p~~~~~~~~~~y~~~~~~   41 (96)
T d1x5xa1          12 AGITWLSLQWSKPSGTPSDEGISYILEMEE   41 (96)
T ss_dssp             ECSSEEEEECCCCSSCCSSSSCEEEEEECC
T ss_pred             ecCCEEEEEEEeecccCcceEeeeEEEeee
Confidence            456688888876   223456667666654

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.72  Score=21.24  Aligned_cols=28  Identities=14%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. .++..|.+.|+...
T Consensus         8 ~t~~sv~l~W~~p~-~~~~~Y~v~~~~~~   35 (91)
T d1fnaa_           8 ATPTSLLISWDAPA-VTVRYYRITYGETG   35 (91)
T ss_dssp             ECSSCEEEECCCCS-SCCSEEEEEEEETT
T ss_pred             eCCCEEEEEEEccc-eEecEEEEEEEcCC
Confidence            35567888887633 35678888887653

>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=83.42  E-value=0.57  Score=20.83  Aligned_cols=50  Identities=12%  Similarity=0.323  Sum_probs=28.5

Q ss_pred             EEEEEEeeecCCCe--eEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132         11 AEIICNVYANPPAK--VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus        11 ~~l~C~~~~~p~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      -.+.|.+.|...|.  ++|...++...      ......  ..   .+..-..|.|.|.....
T Consensus        10 N~LtCEVlGPtsPkl~LsLklenQ~~k------VS~qqK--~v---~v~~PeaG~WqClLsd~   61 (72)
T d1cida2          10 NTLTCEVMGPTSPKMRLILKQENQEAR------VSRQEK--VI---QVQAPEAGVWQCLLSEG   61 (72)
T ss_dssp             SEEEEEEESCCCSSEEEEEEETTSCEE------EEESSS--EE---EEESCCSSEEEEEEEET
T ss_pred             CceEEEEeCCCCCCeEEEEEecCccce------ecCcee--eE---EecCCCCceEEEEEccC
Confidence            36889999876774  56665554321      111110  12   22345689999987654

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.03  E-value=1.1  Score=20.34  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=19.2

Q ss_pred             eCCCeeEEEEEEccCCcceeEEEEEEEec
Q psy12132         97 LGPDGYRLVWQVDTYSAIIQYLLKFRERE  125 (126)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~  125 (126)
                      ...+.+.|+|.+.. ..+..|.+.|+...
T Consensus        11 ~t~~sv~v~W~~p~-~~~~~Y~v~~~~~~   38 (87)
T d1qr4a1          11 PTETTLSLRWRRPV-AKFDRYRLTYVSPS   38 (87)
T ss_dssp             CCSSEEEEEEECCS-SCCSEEEEEEECTT
T ss_pred             ecCCEEEEEEECCC-CCcceeEEEeecCC
Confidence            35567888998743 34678888887643

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=1.5  Score=20.97  Aligned_cols=28  Identities=11%  Similarity=0.020  Sum_probs=18.0

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEE
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRE  123 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~  123 (126)
                      ...+..+.|+|.+.+..|.....+.|.+
T Consensus        14 v~~G~~v~l~C~v~g~~p~p~~~i~W~~   41 (106)
T d1zxqa1          14 VAVGKSFTIECRVPTVEPLDSLTLFLFR   41 (106)
T ss_dssp             ECTTSEEEEEEEECSCBCGGGEEEEEEE
T ss_pred             EeCCCEEEEEEEEeCcccCCCceEEEEc
Confidence            4478899999999775433333444443

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=1.3  Score=20.88  Aligned_cols=26  Identities=15%  Similarity=-0.038  Sum_probs=18.1

Q ss_pred             CCeeEEEEEEc-cCCcceeEEEEEEEe
Q psy12132         99 PDGYRLVWQVD-TYSAIIQYLLKFRER  124 (126)
Q Consensus        99 ~~~~~l~~~~~-~~~~~~~~~~~~r~~  124 (126)
                      ...+.|.|.+. .......|.++|++.
T Consensus        16 n~~~~L~W~pp~~~g~~~~Y~Ve~~~~   42 (99)
T d1y6kr1          16 FFHHILHWTPIPQQSESTCYEVALLRY   42 (99)
T ss_dssp             TTEEEEEECCCTTCCTTCEEEEEEEET
T ss_pred             CCEEEEEEcCCCCcCCCCEEEEEEEEC
Confidence            34688999873 334446799999874

>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.64  E-value=0.63  Score=20.68  Aligned_cols=49  Identities=10%  Similarity=0.287  Sum_probs=28.3

Q ss_pred             EEEEEeeecCCC--eeEEEECCEEeccCCcEEEEecCCeEEEEEecCCCCCCEEEEEEEecC
Q psy12132         12 EIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN   71 (126)
Q Consensus        12 ~l~C~~~~~p~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   71 (126)
                      .+.|.+.|...|  .++|...++...    .  ....     ....+..-..|.|.|.....
T Consensus         9 ~LtCEVlGPtsPkl~LslklenQ~ak----V--S~qq-----K~v~v~~PeaG~WqClLsd~   59 (72)
T d1wioa4           9 NLTCEVWGPTSPKLMLSLKLENKEAK----V--SKRE-----KAVWVLNPEAGMWQCLLSDS   59 (72)
T ss_dssp             SEEEEEESSCCTTCCEEEECSSSSCS----E--EESS-----SEEEESSCCSEEEEEEECSS
T ss_pred             ceEEEEeCCCCCCeEEEEEecCccce----e--cCce-----eeEEecCCCCceEEEEEccC
Confidence            578999876666  567765554321    1  1111     11233445789999987754

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.60  E-value=0.83  Score=21.38  Aligned_cols=28  Identities=25%  Similarity=0.507  Sum_probs=20.0

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+.. .++..|.+.|+..
T Consensus        14 ~~t~~sv~v~W~pp~-~~~~~y~i~~~~~   41 (101)
T d2cuia1          14 DVTTSSLRLNWEAPP-GAFDSFLLRFGVP   41 (101)
T ss_dssp             SCCSSCEEEECCCCT-TSCSEEEEEEECC
T ss_pred             EECCCEEEEEEEecc-ccccceEEEEEec
Confidence            446678999997632 4567888888764

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.46  E-value=0.063  Score=25.93  Aligned_cols=29  Identities=21%  Similarity=0.441  Sum_probs=21.7

Q ss_pred             eeCCCeeEEEEEE--ccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQV--DTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~--~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+  ..+..++.|.+.|+..
T Consensus        15 ~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~   45 (102)
T d2dtge1          15 IFENNVVHLMWQEPKEPNGLIVLYEVSYRRY   45 (102)
T ss_dssp             SSSSSCCCCCCCCCCSCSSCEEEECCCCBSS
T ss_pred             EECCCEEEEEEEeCCCCcceEEEeeeEEEec
Confidence            3466789999986  3346789999998864

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.71  E-value=1.8  Score=20.57  Aligned_cols=26  Identities=15%  Similarity=0.461  Sum_probs=17.9

Q ss_pred             CeeEEEEEEcc------CCcceeEEEEEEEec
Q psy12132        100 DGYRLVWQVDT------YSAIIQYLLKFRERE  125 (126)
Q Consensus       100 ~~~~l~~~~~~------~~~~~~~~~~~r~~~  125 (126)
                      ..+.|+|.+..      ...++.|.+.||...
T Consensus        21 ~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~   52 (106)
T d1axib2          21 ADIQVRWEAPRNADIQKGWMVLEYELQYKEVN   52 (106)
T ss_dssp             EEEEEEEECCTTSCTTTTSCCEEEEEEEEETT
T ss_pred             CeEEEEEcCCCccCCCCCeeEEEEEEeeeecC
Confidence            35889998732      134678999998753

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=1.7  Score=19.72  Aligned_cols=28  Identities=11%  Similarity=0.379  Sum_probs=18.5

Q ss_pred             eeCCCeeEEEEEEccCCcceeEEEEEEEe
Q psy12132         96 RLGPDGYRLVWQVDTYSAIIQYLLKFRER  124 (126)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~  124 (126)
                      ....+.+.|+|.+.. .....|.+.|+..
T Consensus        10 ~v~~~si~l~W~~p~-~~~~~~~i~~~~~   37 (90)
T d1fnha1          10 QVTPTSLSAQWTPPN-VQLTGYRVRVTPK   37 (90)
T ss_dssp             EECSSCEEEEEECCS-SCCSEEEEEEEES
T ss_pred             EecCCEEEEEEEccc-eeccceEEEEEee
Confidence            456678888887743 3455677777664