Psyllid ID: psy12143

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MLSRSVTVLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
cHHcHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccEEEEEEEcccccccccccccccccEEEEccHHHHHHHHHHHHccccccccccccccEEcEEEEEcccccccEEEEEEEEEcccccEEEEEEcccccHHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEEcccccccccccccHHHHccccccccHHHHHHHHccccEEEcccccHHHHcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEEEccc
cHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHccccccccEEEEccHHHHHHHHHHHccccEEEEEccccccHHHcEEccccEccEEEEccHHHHHHHHHcccccEEEccccccccEEcccEEEEEcccccEEEEEEEEEEHHHcEEEEEEEccccccHHHHHHHcHHHcEEEEcEcccEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEcccEEEEccEEEEEcHHHHHHcHHHHHccccccccHHHHHHHHcccEEEEccccEEEEEccHHHHHHHHHHHHHccccEcEEEEccccccHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHHccccEEEEccc
MLSRSVTVLENVAKNtslkalsaapswsqqkrnlnvHEHVSYTLlkeggipvppfgvakTKKEAGEIAKKLNIKDIVLKAQVLaggrgkgafkgglkggvkmvdtpEEAEEVAGKMIGDYLItkqtgekgriCNAVMvterkyprkEYYFAFMMERSFAGPVliassqggvnieevaaenpsailyepvditvGITKEQALKVADAVGLKAKRDITAEMLIKMYALFIskdaslieinpyaedatgnffgldakmrfddnAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYialdgsigclvngaglaMATMDIIKlhggepanfldvgggaTAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSlkipiicrlqgtnvddAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
MLSRSVTVLENVakntslkalsaapswsqqkrnLNVHEHVSYTLlkeggipvpPFGVAKTKKEAGEiakklnikdIVLKAQVLaggrgkgafkgglkggvkmvDTPEEAEEVAGKMIGdylitkqtgekgricnavmvterkyPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
MLSRSVTVLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAggrgkgafkgglkggvkMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
*********************************LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD******EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEV******
***************************SQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
MLSRSVTVLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
MLSRSVTVLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
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SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSRSVTVLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q148D5463 Succinyl-CoA ligase [ADP- yes N/A 0.936 0.896 0.637 1e-157
Q9YI37413 Succinyl-CoA ligase [ADP- N/A N/A 0.930 0.997 0.644 1e-156
Q9Z2I9463 Succinyl-CoA ligase [ADP- yes N/A 0.930 0.889 0.644 1e-156
Q9P2R7463 Succinyl-CoA ligase [ADP- yes N/A 0.930 0.889 0.644 1e-156
O97580425 Succinyl-CoA ligase [ADP- yes N/A 0.930 0.969 0.634 1e-155
Q4R517463 Succinyl-CoA ligase [ADP- N/A N/A 0.930 0.889 0.636 1e-155
P53588435 Probable succinyl-CoA lig yes N/A 0.954 0.972 0.596 1e-142
Q55AI5445 Succinyl-CoA ligase [ADP- yes N/A 0.984 0.979 0.528 1e-132
P53587437 Succinyl-CoA ligase [GDP- N/A N/A 0.975 0.988 0.553 1e-131
Q9P567447 Probable succinyl-CoA lig N/A N/A 0.993 0.984 0.529 1e-128
>sp|Q148D5|SUCB1_BOVIN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1 Back     alignment and function desciption
 Score =  553 bits (1426), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/416 (63%), Positives = 332/416 (79%), Gaps = 1/416 (0%)

Query: 29  QQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRG 88
           QQ+RNL++HE++S  LL+E G+ +P   VAK+  EA  IAKKL  KD+V+KAQVLAGGRG
Sbjct: 48  QQQRNLSLHEYLSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRG 107

Query: 89  KGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEY 148
           KG F+ GLKGGVK+V +PEEA+ V+ +MIG  L TKQTGEKGRICN V+V ER+YPR+EY
Sbjct: 108 KGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREY 167

Query: 149 YFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVG 208
           YFA  MERSF GPVLI SS GGVNIE+VAAE P AI+ EP+DI  GI KEQA+++A  +G
Sbjct: 168 YFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMG 227

Query: 209 LKAK-RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKA 267
             A   D  AE +IK+Y  F+  DA+++EINP  ED+ G    +DAK+ FD N+ +RQK 
Sbjct: 228 FPASIVDSAAENMIKLYDPFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKK 287

Query: 268 LFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLD 327
           +FDL+DW+QED ++ +AAK  LNYI LDG+IGCLVNGAGLAMATMDIIKLHGG PANFLD
Sbjct: 288 IFDLQDWTQEDERDKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLD 347

Query: 328 VGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR 387
           VGGGAT  QV EAFK+IT+D KV +I+VNIFGGIMRCDVIA+GI+ A ++L +KIPI+ R
Sbjct: 348 VGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVR 407

Query: 388 LQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL 443
           LQGT VDDAK LIA + +KIL CD+LDEAA++ VKLS IV LA+ A+++V F++P+
Sbjct: 408 LQGTRVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQAQVDVKFQLPI 463
Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5
>sp|Q9YI37|SUCB1_COLLI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Columba livia GN=SUCLA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2 Back     alignment and function description
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3 Back     alignment and function description
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1 Back     alignment and function description
>sp|Q4R517|SUCB1_MACFA Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Macaca fascicularis GN=SUCLA2 PE=2 SV=1 Back     alignment and function description
>sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=F47B10.1 PE=3 SV=1 Back     alignment and function description
>sp|Q55AI5|SUCB1_DICDI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1 Back     alignment and function description
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Neocallimastix frontalis GN=SCSB PE=2 SV=2 Back     alignment and function description
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B9J10.140 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
332372528450 unknown [Dendroctonus ponderosae] 0.997 0.982 0.765 0.0
91082037447 PREDICTED: similar to AGAP004744-PA [Tri 0.990 0.982 0.765 0.0
270007302444 hypothetical protein TcasGA2_TC013859 [T 0.990 0.988 0.765 0.0
321453347450 hypothetical protein DAPPUDRAFT_304522 [ 1.0 0.984 0.702 0.0
328724202488 PREDICTED: succinyl-CoA ligase [ADP-form 1.0 0.907 0.721 0.0
307200144449 Succinyl-CoA ligase [ADP-forming] subuni 0.997 0.984 0.683 1e-179
156546290450 PREDICTED: succinyl-CoA ligase [ADP-form 0.997 0.982 0.689 1e-179
66548261448 PREDICTED: succinyl-CoA ligase [ADP-form 0.997 0.986 0.678 1e-179
340726331449 PREDICTED: succinyl-CoA ligase [ADP-form 0.997 0.984 0.681 1e-178
380024288448 PREDICTED: succinyl-CoA ligase [ADP-form 0.997 0.986 0.678 1e-178
>gi|332372528|gb|AEE61406.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/447 (76%), Positives = 390/447 (87%), Gaps = 5/447 (1%)

Query: 2   LSRSVTVLENVAKNTSLKALS--AAPSW---SQQKRNLNVHEHVSYTLLKEGGIPVPPFG 56
           L RS+ + ENV   T  K L   A   W   +QQKRNLNVHEHVSYTLLK+ GI VP FG
Sbjct: 4   LLRSLALTENVVAKTCPKILGTVANSRWNPQTQQKRNLNVHEHVSYTLLKDAGITVPNFG 63

Query: 57  VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKM 116
           VAKTK+EA +IA+KLN KD+VLKAQVLAGGRGKG+FK GLKGGV+MV +P+EAE+++G+M
Sbjct: 64  VAKTKQEARQIAEKLNTKDLVLKAQVLAGGRGKGSFKNGLKGGVRMVYSPDEAEDISGQM 123

Query: 117 IGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEV 176
           +G YL+TKQTGEKGRICNAVMV ERK+PRKE+YFA MMER+FAGPV+IASSQGGVNIEEV
Sbjct: 124 LGQYLVTKQTGEKGRICNAVMVAERKFPRKEFYFAVMMERAFAGPVIIASSQGGVNIEEV 183

Query: 177 AAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIE 236
           AAENP AILYEPVD+T G+TKEQA KVA  VGL+++++ TAEML++MY LF+ KDA LIE
Sbjct: 184 AAENPDAILYEPVDVTKGLTKEQAEKVAVKVGLESQKEKTAEMLLRMYDLFVKKDALLIE 243

Query: 237 INPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDG 296
           INPYAEDA   +F LDAK RFDDNA FRQK LF LRDW+QED KEV A+K  LNYIALDG
Sbjct: 244 INPYAEDAGEKYFSLDAKFRFDDNAAFRQKDLFALRDWTQEDEKEVAASKFDLNYIALDG 303

Query: 297 SIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVN 356
           +IGC+VNGAGLAMATMDII LHGG PANFLDVGGGATA+ VKEAFKIITADPKV AI+VN
Sbjct: 304 NIGCMVNGAGLAMATMDIISLHGGSPANFLDVGGGATASAVKEAFKIITADPKVHAILVN 363

Query: 357 IFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEA 416
           IFGGIMRCDVIAEGIIAAA+ELSLK+PI+CRLQGTNVDDAKVLIAS+ +KILP DNLDEA
Sbjct: 364 IFGGIMRCDVIAEGIIAAAKELSLKMPIVCRLQGTNVDDAKVLIASSGLKILPVDNLDEA 423

Query: 417 ARLAVKLSSIVGLARAAKMEVNFEIPL 443
           ARLAVKLS+IV LAR AK+++NFEIPL
Sbjct: 424 ARLAVKLSNIVSLARDAKLDINFEIPL 450

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91082037|ref|XP_970725.1| PREDICTED: similar to AGAP004744-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270007302|gb|EFA03750.1| hypothetical protein TcasGA2_TC013859 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|321453347|gb|EFX64591.1| hypothetical protein DAPPUDRAFT_304522 [Daphnia pulex] Back     alignment and taxonomy information
>gi|328724202|ref|XP_001942971.2| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307200144|gb|EFN80453.1| Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156546290|ref|XP_001605984.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66548261|ref|XP_624343.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340726331|ref|XP_003401513.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380024288|ref|XP_003695933.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
FB|FBgn0037643503 skap "skpA associated protein" 0.981 0.864 0.633 1.2e-138
UNIPROTKB|Q5F3B9463 SUCLA2 "Uncharacterized protei 0.936 0.896 0.610 1.6e-132
MGI|MGI:1306775463 Sucla2 "succinate-Coenzyme A l 0.936 0.896 0.610 5.6e-132
UNIPROTKB|Q9P2R7463 SUCLA2 "Succinyl-CoA ligase [A 0.936 0.896 0.610 9.1e-132
ZFIN|ZDB-GENE-040426-1963466 sucla2 "succinate-CoA ligase, 0.936 0.890 0.617 1.5e-131
UNIPROTKB|F1RK10463 SUCLA2 "Succinyl-CoA ligase [A 0.936 0.896 0.605 1.9e-131
UNIPROTKB|F1MGC0463 SUCLA2 "Succinyl-CoA ligase [A 0.936 0.896 0.605 2.4e-131
UNIPROTKB|O97580425 SUCLA2 "Succinyl-CoA ligase [A 0.936 0.976 0.600 6.4e-131
UNIPROTKB|Q148D5463 SUCLA2 "Succinyl-CoA ligase [A 0.936 0.896 0.603 1.3e-130
RGD|1309397437 Sucla2 "succinate-CoA ligase, 0.936 0.949 0.600 9.3e-130
FB|FBgn0037643 skap "skpA associated protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
 Identities = 277/437 (63%), Positives = 329/437 (75%)

Query:     8 VLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEI 67
             ++E V      K L  AP   QQ RNLNV EHVSY+LL E  IP P F VAK  KEA +I
Sbjct:    12 LIETVRPAAIKKILGLAPIAVQQLRNLNVQEHVSYSLLNEAKIPTPRFAVAKNGKEANDI 71

Query:    68 AKKLNIKDIVLKAQVLAXXXXXXXXXXXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTG 127
             A KL   ++VLKAQVLA                 +V  P+ AEE++ KMI   L+TKQTG
Sbjct:    72 ATKLKTDNLVLKAQVLAGGRGKGTFKNGLKGGVRVVYDPQTAEELSSKMIDQLLVTKQTG 131

Query:   128 EKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYE 187
               GRIC  VMV ERK+PR+E+YFA MMER+F GPVLIAS +GGV+IEEVAA +P AILYE
Sbjct:   132 AAGRICKKVMVAERKFPRREFYFAVMMERAFNGPVLIASKEGGVDIEEVAASSPDAILYE 191

Query:   188 PVDITVGITKEQALKVADAVGLKAK-RDITAEMLIKMYALFISKDASLIEINPYAEDA-T 245
             P+DI  G+T EQA K+   VGL     D   +ML+ +Y LF+ KDA L+EINPYAEDA +
Sbjct:   192 PIDIGTGLTSEQAEKIVKKVGLGGDGEDTHVQMLLNLYDLFVKKDALLVEINPYAEDAMS 251

Query:   246 GNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGA 305
             G FF LDAK+RFDDNAEFRQK LF LRDW+QED KEVEAAK++LNYIALDG+IGC+VNGA
Sbjct:   252 GCFFALDAKLRFDDNAEFRQKELFALRDWTQEDPKEVEAAKYNLNYIALDGTIGCMVNGA 311

Query:   306 GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCD 365
             GLAMATMDIIKL+GGEPANFLDVGGGATA  VK AFKIIT+DPKV  I+VNIFGGIMRCD
Sbjct:   312 GLAMATMDIIKLYGGEPANFLDVGGGATAEAVKAAFKIITSDPKVLCILVNIFGGIMRCD 371

Query:   366 VIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425
             VIAEGII+A ++L+L +P++ RLQGT V +A+ LI ++ +KIL  D+LD+AA LAV L+ 
Sbjct:   372 VIAEGIISATKDLNLNMPVVVRLQGTKVKEARELIRTSGLKILARDDLDKAADLAVHLAQ 431

Query:   426 IVGLARAAKMEVNFEIP 442
             IV LAR  KM+VNFEIP
Sbjct:   432 IVKLAREMKMDVNFEIP 448
GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=ISS
GO:0009361 "succinate-CoA ligase complex (ADP-forming)" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005813 "centrosome" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0010824 "regulation of centrosome duplication" evidence=IMP
UNIPROTKB|Q5F3B9 SUCLA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1306775 Sucla2 "succinate-Coenzyme A ligase, ADP-forming, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2R7 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1963 sucla2 "succinate-CoA ligase, ADP-forming, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK10 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MGC0 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O97580 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q148D5 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309397 Sucla2 "succinate-CoA ligase, ADP-forming, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53587SUCB_NEOFR6, ., 2, ., 1, ., 40.55370.97510.9885N/AN/A
Q2J3G9SUCC_RHOP26, ., 2, ., 1, ., 50.46520.86900.9673yesN/A
Q2W063SUCC_MAGSA6, ., 2, ., 1, ., 50.47190.87810.9773yesN/A
Q9YI37SUCB1_COLLI6, ., 2, ., 1, ., 50.64400.93000.9975N/AN/A
A5VSQ3SUCC_BRUO26, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
B0CIT0SUCC_BRUSI6, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
Q3MHX5SUCB2_BOVIN6, ., 2, ., 1, ., 40.50510.86900.8912noN/A
Q57AX2SUCC_BRUAB6, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
A1AZH7SUCC_PARDP6, ., 2, ., 1, ., 50.49100.87810.9798yesN/A
P53588SUCB1_CAEEL6, ., 2, ., 1, ., 50.59620.95480.9724yesN/A
Q3IZ84SUCC_RHOS46, ., 2, ., 1, ., 50.48340.87810.9798yesN/A
P53312SUCB_YEAST6, ., 2, ., 1, ., 50.46380.94800.9836yesN/A
Q869S7SUCB2_DICDI6, ., 2, ., 1, ., 40.50250.88260.9309noN/A
A7HT39SUCC_PARL16, ., 2, ., 1, ., 50.48200.86230.9820yesN/A
P66868SUCC_BRUSU6, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
A5FYZ9SUCC_ACICJ6, ., 2, ., 1, ., 50.49740.86900.9673yesN/A
A9IZV3SUCC_BART16, ., 2, ., 1, ., 50.46780.86900.9673yesN/A
B2UMH5SUCC_AKKM86, ., 2, ., 1, ., 50.51300.86000.9694yesN/A
P66867SUCC_BRUME6, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
Q9P567SUCB_NEUCR6, ., 2, ., 1, ., 40.52940.99320.9843N/AN/A
O82662SUCB_ARATH6, ., 2, ., 1, ., 50.51820.90290.9501yesN/A
Q9P2R7SUCB1_HUMAN6, ., 2, ., 1, ., 50.64400.93000.8898yesN/A
Q4R517SUCB1_MACFA6, ., 2, ., 1, ., 50.63680.93000.8898N/AN/A
Q6K9N6SUCB_ORYSJ6, ., 2, ., 1, ., 50.51950.91420.9597yesN/A
B9EBC7SUCC_MACCJ6, ., 2, ., 1, ., 50.47570.86450.9845yesN/A
A3PN13SUCC_RHOS16, ., 2, ., 1, ., 50.48340.87810.9798yesN/A
A4YKC6SUCC_BRASO6, ., 2, ., 1, ., 50.47320.87810.9773yesN/A
Q55AI5SUCB1_DICDI6, ., 2, ., 1, ., 50.52800.98410.9797yesN/A
Q1QQR3SUCC_NITHX6, ., 2, ., 1, ., 50.47580.87810.9798yesN/A
B9DPG0SUCC_STACT6, ., 2, ., 1, ., 50.47570.86450.9871yesN/A
A9M8R2SUCC_BRUC26, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
P53590SUCB2_PIG6, ., 2, ., 1, ., 40.51530.88260.9030noN/A
Q148D5SUCB1_BOVIN6, ., 2, ., 1, ., 50.63700.93670.8963yesN/A
C0RFH1SUCC_BRUMB6, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
Q84LB6SUCB_SOLLC6, ., 2, ., 1, ., 50.50850.90290.9592N/AN/A
B2S880SUCC_BRUA16, ., 2, ., 1, ., 50.47300.86900.9673yesN/A
Q9Z2I9SUCB1_MOUSE6, ., 2, ., 1, ., 50.64400.93000.8898yesN/A
Q9Z2I8SUCB2_MOUSE6, ., 2, ., 1, ., 40.51550.86900.8891noN/A
B9KNB3SUCC_RHOSK6, ., 2, ., 1, ., 50.48340.87810.9798yesN/A
O94415SUCB_SCHPO6, ., 2, ., 1, ., 40.52250.97510.9976yesN/A
Q2RV33SUCC_RHORT6, ., 2, ., 1, ., 50.46560.87810.9749yesN/A
B1ZP17SUCC_OPITP6, ., 2, ., 1, ., 50.47050.88030.9923yesN/A
A5E936SUCC_BRASB6, ., 2, ., 1, ., 50.47710.87580.9748yesN/A
O97580SUCB1_PIG6, ., 2, ., 1, ., 50.63430.93000.9694yesN/A
A4WNM6SUCC_RHOS56, ., 2, ., 1, ., 50.48340.87810.9798yesN/A
Q6G1M1SUCC_BARHE6, ., 2, ., 1, ., 50.46520.86900.9673yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.963
4th Layer6.2.1.50.946

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
PLN00124422 PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi 1e-176
PRK00696388 PRK00696, sucC, succinyl-CoA synthetase subunit be 1e-175
COG0045387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 1e-153
TIGR01016386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 1e-138
PRK14046392 PRK14046, PRK14046, malate--CoA ligase subunit bet 1e-121
pfam08442202 pfam08442, ATP-grasp_2, ATP-grasp domain 1e-76
pfam00549128 pfam00549, Ligase_CoA, CoA-ligase 6e-34
PLN02235423 PLN02235, PLN02235, ATP citrate (pro-S)-lyase 0.003
>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information 
 Score =  498 bits (1284), Expect = e-176
 Identities = 218/430 (50%), Positives = 292/430 (67%), Gaps = 12/430 (2%)

Query: 1   MLSRSVTVLENVAKNTSLKALSAAPSWS-QQKRNLNVHEHVSYTLLKEGGIPVPPFGVAK 59
           ML   +  L       + ++LS A  W  QQ R LN+HE+    L+ + G+ VP    A 
Sbjct: 1   MLRGLLNKL-------ASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAAS 53

Query: 60  TKKEAGEIAKKL--NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMI 117
           +  E  +  +K+  +  ++V+K+Q+LAGGRG G FK GLKGGV +V   ++AEE+AGKM+
Sbjct: 54  SLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIV-KKDKAEELAGKML 112

Query: 118 GDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVA 177
           G  L+TKQTG  G+  N V + E+     E YFA +++R+ AGP++IA S+GG +IE++A
Sbjct: 113 GQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLA 172

Query: 178 AENPSAILYEPVDITVGITKEQALKVADAVGLK-AKRDITAEMLIKMYALFISKDASLIE 236
            + P  I+  P+DI  GIT E A KV D +  K A R+   E + K+Y LF   D +++E
Sbjct: 173 EKFPEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVE 232

Query: 237 INPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDG 296
           INP AE A G     DAK+ FDDNA FRQK +F LRD SQED +EV AAK  LNYI LDG
Sbjct: 233 INPLAETADGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDG 292

Query: 297 SIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVN 356
            IGC+VNGAGLAMATMDIIKLHGG PANFLDVGG A+  QV EAFKI+T+D KV AI+VN
Sbjct: 293 EIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVN 352

Query: 357 IFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEA 416
           IFGGIM+CDVIA GI+ AA+++ LK+P++ RL+GTNVD  K ++  + M ++  ++LD+A
Sbjct: 353 IFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDA 412

Query: 417 ARLAVKLSSI 426
           A  AVK  +I
Sbjct: 413 AEKAVKALAI 422

Length = 422
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase Back     alignment and domain information
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 100.0
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
PLN02235423 ATP citrate (pro-S)-lyase 100.0
KOG1447|consensus412 100.0
KOG2799|consensus434 100.0
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 100.0
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 100.0
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.87
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 99.83
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.52
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 99.49
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.45
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 99.34
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.33
PRK08654499 pyruvate carboxylase subunit A; Validated 99.32
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 99.31
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 99.31
PLN02257434 phosphoribosylamine--glycine ligase 99.3
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.3
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.3
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 99.27
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 99.27
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.26
PLN02948577 phosphoribosylaminoimidazole carboxylase 99.26
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 99.25
PRK05586447 biotin carboxylase; Validated 99.25
PLN02735 1102 carbamoyl-phosphate synthase 99.24
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.24
PRK07178472 pyruvate carboxylase subunit A; Validated 99.23
PLN027351102 carbamoyl-phosphate synthase 99.21
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 99.21
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.19
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 99.18
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.17
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.17
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 99.15
PRK08462445 biotin carboxylase; Validated 99.15
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 99.13
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.12
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.11
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 99.1
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.1
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 99.09
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.09
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.08
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.06
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 99.02
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 99.02
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.02
PRK06524493 biotin carboxylase-like protein; Validated 99.01
PRK12999 1146 pyruvate carboxylase; Reviewed 99.0
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.0
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.99
PRK02186 887 argininosuccinate lyase; Provisional 98.99
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 98.97
KOG0237|consensus 788 98.94
PRK07206416 hypothetical protein; Provisional 98.93
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 98.92
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 98.9
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 98.89
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 98.86
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 98.85
PRK14571299 D-alanyl-alanine synthetase A; Provisional 98.85
KOG0369|consensus 1176 98.84
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 98.84
PRK14016 727 cyanophycin synthetase; Provisional 98.81
PRK14570364 D-alanyl-alanine synthetase A; Provisional 98.79
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 98.79
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 98.78
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 98.76
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 98.74
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 98.72
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 98.71
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 98.7
KOG0238|consensus 670 98.67
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 98.61
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 98.56
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 98.54
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 98.49
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 98.49
PRK06849389 hypothetical protein; Provisional 98.48
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 98.4
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 98.33
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 98.28
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 98.21
KOG0370|consensus 1435 98.06
PLN02522 608 ATP citrate (pro-S)-lyase 97.99
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 97.98
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 97.89
KOG1254|consensus600 97.8
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 97.79
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 97.78
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 97.76
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 97.7
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 97.69
TIGR02717 447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 97.62
PRK06091 555 membrane protein FdrA; Validated 97.62
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 97.58
KOG0368|consensus 2196 97.36
PLN02941328 inositol-tetrakisphosphate 1-kinase 97.25
KOG0370|consensus1435 96.79
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 96.52
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 96.5
COG3919415 Predicted ATP-grasp enzyme [General function predi 96.49
PRK12458338 glutathione synthetase; Provisional 96.24
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 95.68
PRK05246316 glutathione synthetase; Provisional 95.2
KOG1255|consensus329 95.18
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 92.56
COG2232389 Predicted ATP-dependent carboligase related to bio 92.13
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 91.28
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 90.54
COG0054152 RibH Riboflavin synthase beta-chain [Coenzyme meta 88.74
PRK12419158 riboflavin synthase subunit beta; Provisional 87.33
PRK10949 618 protease 4; Provisional 85.39
TIGR00237 432 xseA exodeoxyribonuclease VII, large subunit. This 84.26
COG0616 317 SppA Periplasmic serine proteases (ClpP class) [Po 82.46
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 81.69
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-78  Score=622.14  Aligned_cols=394  Identities=53%  Similarity=0.840  Sum_probs=371.9

Q ss_pred             cccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc---CCCeEEEEEeecCCCCCccccccCccCcEEEeCCH
Q psy12143         30 QKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL---NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTP  106 (443)
Q Consensus        30 ~~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l---g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~  106 (443)
                      |.++|+|+||++|++|++||||+|++.++++++|+.++++++   ++ |+|+|+|++.|||||+|||||.+|||+++.+ 
T Consensus        24 ~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~-pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-  101 (422)
T PLN00124         24 QLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEG-EVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-  101 (422)
T ss_pred             cccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCC-cEEEEEEeccCCccccccccccCCeEEECCH-
Confidence            467799999999999999999999999999999999999999   56 9999999999999999999997799999977 


Q ss_pred             HHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEE
Q psy12143        107 EEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILY  186 (443)
Q Consensus       107 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~  186 (443)
                      +|+.+++++|+++...++|+++.|..+++++|++++..++|+|+|+++||..+||++++++.||++||.+.+..||.+.+
T Consensus       102 eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~  181 (422)
T PLN00124        102 DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIK  181 (422)
T ss_pred             HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeE
Confidence            99999999999986555676666788899998888888999999999999667999977779999999999989999999


Q ss_pred             EecCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhh
Q psy12143        187 EPVDITVGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQ  265 (443)
Q Consensus       187 ~~l~p~~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rq  265 (443)
                      ++++|..++++.++++++..|++ +.+.+++++++.+||++|.+.+++++|||||+++++|+++|+|+++.+||||.|||
T Consensus       182 ~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA~~R~  261 (422)
T PLN00124        182 VPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQ  261 (422)
T ss_pred             EecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCchhhcC
Confidence            99999889999999999999998 88999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH
Q psy12143        266 KALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT  345 (443)
Q Consensus       266 p~i~~~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll  345 (443)
                      +++..++++.+.++.|.++...+++|++++|+||+|+||+|++|.++|++..+|++|+||+|++|.++.+.+++++++++
T Consensus       262 ~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a~~~~v~~a~~ii~  341 (422)
T PLN00124        262 KEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILT  341 (422)
T ss_pred             hhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCCCHHHHHHHHHHHh
Confidence            99998888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143        346 ADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS  425 (443)
Q Consensus       346 ~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~  425 (443)
                      +||++++|||||+||+++||.+|++|++++++.+.++|||+|+.|++.++++++|++.|++++.|+++++|++...+++.
T Consensus       342 ~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l~~A~~~~v~~~~  421 (422)
T PLN00124        342 SDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKALA  421 (422)
T ss_pred             cCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999878899999999999999999999999887779999999999887754

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>KOG1447|consensus Back     alignment and domain information
>KOG2799|consensus Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>KOG0237|consensus Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>KOG0369|consensus Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>KOG0238|consensus Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>KOG0370|consensus Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1254|consensus Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>KOG0368|consensus Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>KOG0370|consensus Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>KOG1255|consensus Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism] Back     alignment and domain information
>PRK12419 riboflavin synthase subunit beta; Provisional Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
2fp4_B395 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 1e-96
1euc_B396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 3e-95
1eud_B396 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 4e-95
1scu_B388 The Crystal Structure Of Succinyl-Coa Synthetase Fr 4e-74
1cqi_B385 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 5e-74
1jll_B388 Crystal Structure Analysis Of The E197betaa Mutant 3e-73
3ufx_B397 Thermus Aquaticus Succinyl-coa Synthetase In Comple 3e-63
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395 Back     alignment and structure 
Iteration: 1

 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/389 (48%), Positives = 255/389 (65%), Gaps = 1/389 (0%)
Query: 34  LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
           +N+ E+ S  L+ + G+ V  F VA T  EA E AK+LN K+IVLKAQ+LA         
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60
Query: 94  XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
                   +   PE   ++A +MIG  L TKQT ++G   N VMV E     +E Y A +
Sbjct: 61  SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 120
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVG-LKAK 212
           M+RS  GPVL+ S QGGV+IEEVAA NP  I  E +DI  GI   QA ++A+ +G L   
Sbjct: 121 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 180
Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
           ++  A+ + K+Y LF+  DA+ +E+NP+ E   G     DAK+ FDDNAEFRQK +F + 
Sbjct: 181 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 240
Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
           D S+ +  E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG 
Sbjct: 241 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV 300
Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
             +QV +AFK++TADPKV AI+VNIFGGI+ C +IA GI  A +EL LK+P++ RL+GTN
Sbjct: 301 KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 360
Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAV 421
           V +A+ ++ ++ + I    +L++AA+ AV
Sbjct: 361 VHEAQNILTNSGLPITSAVDLEDAAKKAV 389
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388 Back     alignment and structure
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385 Back     alignment and structure
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388 Back     alignment and structure
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 0.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 0.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 0.0
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-134
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 6e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 9e-06
2csu_A457 457AA long hypothetical protein; structural genomi 4e-04
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Back     alignment and structure
 Score =  627 bits (1620), Expect = 0.0
 Identities = 199/391 (50%), Positives = 267/391 (68%), Gaps = 1/391 (0%)

Query: 34  LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFK 93
           +N+ E+ S  L+ + G+ V  F VA T  EA E AK+LN K+IVLKAQ+LAGGRGKG F 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60

Query: 94  GGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
            GLKGGV +   PE   ++A +MIG  L TKQT ++G   N VMV E     +E Y A +
Sbjct: 61  SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 120

Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAK- 212
           M+RS  GPVL+ S QGGV+IEEVAA NP  I  E +DI  GI   QA ++A+ +G     
Sbjct: 121 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 180

Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
           ++  A+ + K+Y LF+  DA+ +E+NP+ E   G     DAK+ FDDNAEFRQK +F + 
Sbjct: 181 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 240

Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
           D S+ +  E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG 
Sbjct: 241 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV 300

Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
             +QV +AFK++TADPKV AI+VNIFGGI+ C +IA GI  A +EL LK+P++ RL+GTN
Sbjct: 301 KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 360

Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAVKL 423
           V +A+ ++ ++ + I    +L++AA+ AV  
Sbjct: 361 VHEAQNILTNSGLPITSAVDLEDAAKKAVAS 391
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
1wr2_A238 Hypothetical protein PH1789; structural genomics, 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 99.89
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 99.7
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 99.42
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 99.39
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.36
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.36
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 99.34
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 99.33
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.32
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.31
3ouz_A446 Biotin carboxylase; structural genomics, center fo 99.3
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.29
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 99.28
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 99.27
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 99.26
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.24
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 99.24
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.23
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 99.22
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 99.21
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 99.2
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.2
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 99.2
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.2
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 99.19
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 99.19
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 99.17
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 99.12
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 99.11
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 99.11
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 99.08
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 99.07
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 99.07
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.06
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.04
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 99.03
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.02
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 99.01
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 99.0
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 99.0
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 98.99
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.99
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 98.98
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 98.96
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 98.95
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.95
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 98.93
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 98.91
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 98.88
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 98.88
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 98.83
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 98.79
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 98.75
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 98.73
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 98.71
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 98.68
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 98.68
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 98.57
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 98.5
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 98.31
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 98.24
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 98.09
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 98.08
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 97.92
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 97.91
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 97.86
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 97.73
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 97.66
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 97.64
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 97.61
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 97.55
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 97.46
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 97.39
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 97.37
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 97.35
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 97.28
2csu_A 457 457AA long hypothetical protein; structural genomi 97.17
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 97.09
1ydh_A216 AT5G11950; structural genomics, protein structure 86.0
3nq4_A156 6,7-dimethyl-8-ribityllumazine synthase; 30MER, ic 81.07
1c2y_A156 Protein (lumazine synthase); riboflavin biosynthes 80.71
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
Probab=100.00  E-value=2.9e-79  Score=626.88  Aligned_cols=391  Identities=51%  Similarity=0.803  Sum_probs=367.7

Q ss_pred             cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143         34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA  113 (443)
Q Consensus        34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~  113 (443)
                      |+|+|+++|++|++||||+|++.+++|.+|+.++++++||+|+|+|++..+|||||++|||+..|||+++.|++|+++++
T Consensus         1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~   80 (395)
T 2fp4_B            1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLA   80 (395)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHH
Confidence            78999999999999999999999999999999999999974699999988999999999998889999999999999999


Q ss_pred             HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143        114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV  193 (443)
Q Consensus       114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~  193 (443)
                      +++++....++++++.+..+++++||+|+++++|+|+++.+|+.|++|++++|.+||++||.++.++||++++++++|..
T Consensus        81 ~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~  160 (395)
T 2fp4_B           81 KQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE  160 (395)
T ss_dssp             HTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTT
T ss_pred             HHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCC
Confidence            99987643344555556667899999999999999999999999766999999999999999988889999999999988


Q ss_pred             CCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhccc
Q psy12143        194 GITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR  272 (443)
Q Consensus       194 ~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~~  272 (443)
                      ++++++|++|++.+|+ +.+.+++++++.+||++|.+.++.++|||||+++++|+++++|+++.+|+||.||||++.+++
T Consensus       161 ~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~~~~  240 (395)
T 2fp4_B          161 GIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD  240 (395)
T ss_dssp             CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHHTTC
T ss_pred             CCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchhhhc
Confidence            9999999999999999 889999999999999999999999999999999998779999999999999999999999999


Q ss_pred             CCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccE
Q psy12143        273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCA  352 (443)
Q Consensus       273 ~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~  352 (443)
                      +..++++.|.++.+++|+|++++||||+|+||||++|+++|++..+|++|+||+|++|+++.+.+.++++++++||+||+
T Consensus       241 d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~v~~  320 (395)
T 2fp4_B          241 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEA  320 (395)
T ss_dssp             CCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143        353 IMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLS  424 (443)
Q Consensus       353 vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~  424 (443)
                      ||||+++++++|+.+|++|++++++.+.+||||+|+.|++.++++++|++.|+|++.|+++++|++++.+++
T Consensus       321 ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~  392 (395)
T 2fp4_B          321 ILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV  392 (395)
T ss_dssp             EEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHTT
T ss_pred             EEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHHh
Confidence            999999999999999999999999876789999999999999999999999999955699999999988765
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A Back     alignment and structure
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1eucb1148 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta 1e-53
d2nu7b1150 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta 1e-53
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 3e-53
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 5e-51
d2csua3163 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chai 7e-16
d1a9xa5275 d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta 3e-05
d1a9xa6259 d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta 5e-04
d1kjqa3206 d.142.1.2 (A:113-318) Glycinamide ribonucleotide t 7e-04
d1uc8a2192 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly 0.002
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  174 bits (442), Expect = 1e-53
 Identities = 82/148 (55%), Positives = 112/148 (75%)

Query: 278 DAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQV 337
           +  E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG   +QV
Sbjct: 1   EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60

Query: 338 KEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK 397
            +AFK++TADPKV AI+VNIFGGI+ C +IA GI  A +EL LK+P++ RL+GTNV +A+
Sbjct: 61  YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQ 120

Query: 398 VLIASAAMKILPCDNLDEAARLAVKLSS 425
            ++ ++ + I    +L++AA+ AV   +
Sbjct: 121 NILTNSGLPITSAVDLEDAAKKAVASVT 148
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 163 Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 99.98
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 99.98
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 99.87
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 99.5
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.5
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.49
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.45
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.45
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.44
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.26
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.08
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.03
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.03
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 98.91
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 98.83
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 98.78
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.61
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 98.57
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 98.2
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.88
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.78
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 97.48
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 97.4
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 95.93
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 87.13
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 83.98
d1c2ya_155 Lumazine synthase {Spinach (Spinacia oleracea) [Ta 81.39
d1rvv1_154 Lumazine synthase {Bacillus subtilis [TaxId: 1423] 80.42
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-46  Score=355.61  Aligned_cols=236  Identities=36%  Similarity=0.508  Sum_probs=213.6

Q ss_pred             cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143         34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA  113 (443)
Q Consensus        34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~  113 (443)
                      |+|+||+||++|++||||+|++.+++|++|+.++++++||+|||+|+|...+||||+       |||+++.+.+|+.+++
T Consensus         1 m~L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~-------GGV~~~~~~~e~~~~a   73 (238)
T d2nu7b2           1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFA   73 (238)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTT-------TCEEEECSHHHHHHHH
T ss_pred             CchhHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHhCCCcEEEEEeecccccccc-------eEEEeccccHHHHHHH
Confidence            789999999999999999999999999999999999999669999998667888887       9999999999999999


Q ss_pred             HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143        114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV  193 (443)
Q Consensus       114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~  193 (443)
                      .+++++...+.+..+.|..+++++||+|+++++|+|+|+..|+.|+++++++++.||+++|.+.+.++..+...+++|..
T Consensus        74 ~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~~~~  153 (238)
T d2nu7b2          74 ENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLT  153 (238)
T ss_dssp             HHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECCTTT
T ss_pred             HHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEEecccceeeEeeeccccccccccccCccc
Confidence            99988765556666677788999999999999999999999999744445555579999999988777778777889988


Q ss_pred             CCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhccc
Q psy12143        194 GITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR  272 (443)
Q Consensus       194 ~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~~  272 (443)
                      ++....+.+++..+|+ +.+..++++++.++++++.+.+++++|||||+++++|+++|+||||.+|+||.||||+|..++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki~lDdnA~fr~~~~~~~~  233 (238)
T d2nu7b2         154 GPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMR  233 (238)
T ss_dssp             CCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHHHTC
T ss_pred             ccchhhHHHHHHhcCCcchhhHHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEEeecCcchhcChhHHhhc
Confidence            8999999999999998 889999999999999999999999999999999999989999999999999999999999988


Q ss_pred             CCcc
Q psy12143        273 DWSQ  276 (443)
Q Consensus       273 ~~~~  276 (443)
                      |+.+
T Consensus       234 d~~~  237 (238)
T d2nu7b2         234 DQSQ  237 (238)
T ss_dssp             CGGG
T ss_pred             CcCC
Confidence            7753
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure