Psyllid ID: psy12161

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
DLRSTKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII
cccccHHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHcHHHHHHHHHHHHcccccccc
cccccHHHHHHHHHHHHHHHHHccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHHHHHHHHHHHHHcHHEEEHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHccccccccHHHHHHHHcHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEc
dlrstkeatqTQYTYVLDKFVEQDYSLVYFHygltsknkpslSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKShlnldqlciprqviehDERLTAklskgsvlptpltssvtnltysptqqfgaslqhikdnnggdviaPILRQCVDYlsqpdaleteglfrRSASVALVRQCQTacnngepilfhNDIHLAAVLLKTFLRELdeplltydlydeillfptlnkdeRSRYVKILILeklptdnyTVLKYIVTFLSKiedrsdlnkmtWNNLAVvfapnliwapvnsqlslsaispinsFVYFMFNNYHSIFII
dlrstkeatqtqytyvlDKFVEQDYSLVYFHYgltsknkpslsWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTaklskgsvlptpltssVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILlfptlnkdersRYVKILileklptdnytVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII
DLRSTKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII
**********TQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLS***VL***LT*SVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI*
*********QTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEH*********************************GASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPV********ISPINSFVYFMFNNYHSIFII
*********QTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII
*LRSTKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKG*********SVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DLRSTKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q07960439 Rho GTPase-activating pro yes N/A 0.929 0.724 0.515 1e-83
Q5FWK3439 Rho GTPase-activating pro yes N/A 0.929 0.724 0.515 1e-83
Q9CXP4425 Rho GTPase-activating pro no N/A 0.935 0.752 0.496 2e-77
P85298464 Rho GTPase-activating pro no N/A 0.935 0.689 0.473 3e-77
Q9VTU3476 Rho GTPase-activating pro yes N/A 0.938 0.674 0.443 4e-72
Q54TH9721 Rho GTPase-activating pro yes N/A 0.868 0.411 0.346 6e-43
Q8C4V1 747 Rho GTPase-activating pro no N/A 0.514 0.235 0.371 1e-23
Q5U2Z7 748 Rho GTPase-activating pro no N/A 0.514 0.235 0.371 2e-23
Q8N264 748 Rho GTPase-activating pro no N/A 0.514 0.235 0.366 1e-22
Q8BL80 702 Rho GTPase-activating pro no N/A 0.514 0.250 0.349 2e-22
>sp|Q07960|RHG01_HUMAN Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/330 (51%), Positives = 227/330 (68%), Gaps = 12/330 (3%)

Query: 15  YVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRV 74
           + LD++VE DY+L+Y H+GLTS NKPSLSWL  AYR FDRKYKKN+KALY+VHPT FI+ 
Sbjct: 110 HTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKT 169

Query: 75  VLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPT 134
           +L +FK  IS KFG+K+ Y+NYL EL  H+ L+QL IPRQV+++D+ L  K ++ S  P 
Sbjct: 170 LLILFKPLISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFL--KSTQKS--PA 225

Query: 135 PLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPI-LRQCVDYLSQPDALETEGLFRRS 193
                +      P QQFG SLQH+++ N      PI LR+ V YL Q  AL TEG+FRRS
Sbjct: 226 TAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRS 284

Query: 194 ASVALVRQCQTACNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTL 251
           A+  +VR+ Q   N G P+ F  +N++HL AV+LKTFLREL EPLLT+DLY  ++ F  L
Sbjct: 285 ANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGF--L 342

Query: 252 NKDERSRYVKIL-ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIW 310
           N DE  R    L +L+ LP +NY VL+++  FL +I   SD NKMT  NLAVVF PNL+W
Sbjct: 343 NIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLW 402

Query: 311 APVNSQLSLSAISPINSFVYFMFNNYHSIF 340
           A  ++ ++L AI+PIN+F  F+ ++   +F
Sbjct: 403 AK-DAAITLKAINPINTFTKFLLDHQGELF 431
GTPase activator for the Rho, Rac and Cdc42 proteins, converting them to the putatively inactive GDP-bound state. Cdc42 seems to be the preferred substrate.
Homo sapiens (taxid: 9606)
>sp|Q5FWK3|RHG01_MOUSE Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CXP4|RHG08_MOUSE Rho GTPase-activating protein 8 OS=Mus musculus GN=Arhgap8 PE=2 SV=3 Back     alignment and function description
>sp|P85298|RHG08_HUMAN Rho GTPase-activating protein 8 OS=Homo sapiens GN=ARHGAP8 PE=2 SV=1 Back     alignment and function description
>sp|Q9VTU3|RG68F_DROME Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 SV=1 Back     alignment and function description
>sp|Q54TH9|GACY_DICDI Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1 Back     alignment and function description
>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2 Back     alignment and function description
>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
328776121 484 PREDICTED: rho GTPase-activating protein 0.950 0.671 0.696 1e-127
328776123 493 PREDICTED: rho GTPase-activating protein 0.950 0.659 0.696 1e-127
345484453 489 PREDICTED: rho GTPase-activating protein 0.950 0.664 0.684 1e-126
322778787 450 hypothetical protein SINV_05435 [Solenop 0.950 0.722 0.696 1e-126
350426817 489 PREDICTED: rho GTPase-activating protein 0.950 0.664 0.681 1e-125
350426819 495 PREDICTED: rho GTPase-activating protein 0.950 0.656 0.681 1e-125
332022384 489 Rho GTPase-activating protein 1 [Acromyr 0.953 0.666 0.680 1e-124
340716925 489 PREDICTED: rho GTPase-activating protein 0.950 0.664 0.681 1e-124
340716927 495 PREDICTED: rho GTPase-activating protein 0.950 0.656 0.681 1e-124
380016803 539 PREDICTED: rho GTPase-activating protein 0.944 0.599 0.689 1e-124
>gi|328776121|ref|XP_624226.2| PREDICTED: rho GTPase-activating protein 1-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/330 (69%), Positives = 263/330 (79%), Gaps = 5/330 (1%)

Query: 14  TYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIR 73
           T+ LD FVEQDYSLVYFHYGLTSKNKP LSWLW AY+AFDRKYKKNLKALYLVHPT FIR
Sbjct: 159 THTLDTFVEQDYSLVYFHYGLTSKNKPPLSWLWQAYKAFDRKYKKNLKALYLVHPTNFIR 218

Query: 74  VVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLP 133
           +V QIFK AISAKFGRKM+Y+NYL EL  ++NLDQL IP QVIEH+E+L  K  K   LP
Sbjct: 219 IVWQIFKPAISAKFGRKMMYVNYLEELAQYINLDQLIIPPQVIEHNEQLMLKNKKN--LP 276

Query: 134 T-PLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRR 192
           T P  S+VT  T   T QFGASL  IK+NN GD I PI+RQC+++L  PDALETEG+FRR
Sbjct: 277 TSPPQSTVT--TPVGTTQFGASLTFIKENNNGDPIPPIVRQCIEFLDMPDALETEGIFRR 334

Query: 193 SASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLN 252
           SA+VA+V++ Q  CN G PI F  D H+AAVLLKTFLRELDEPL+TYDLYDEI  F  L+
Sbjct: 335 SANVAVVKELQNRCNQGLPIDFQGDPHIAAVLLKTFLRELDEPLMTYDLYDEITQFQALS 394

Query: 253 KDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312
           KDER R VKIL+LEKLP DNY VLKYIV FLS++ DRSDLNKMT +NLAVVF PNL+ AP
Sbjct: 395 KDERPRRVKILVLEKLPEDNYQVLKYIVQFLSRVMDRSDLNKMTSSNLAVVFGPNLVRAP 454

Query: 313 VNSQLSLSAISPINSFVYFMFNNYHSIFII 342
            +  +SLSAI PIN F+ F+F +   IFII
Sbjct: 455 PSRGMSLSAIGPINQFIDFLFTHQDKIFII 484

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328776123|ref|XP_003249118.1| PREDICTED: rho GTPase-activating protein 1-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|345484453|ref|XP_001604462.2| PREDICTED: rho GTPase-activating protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322778787|gb|EFZ09203.1| hypothetical protein SINV_05435 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|350426817|ref|XP_003494551.1| PREDICTED: rho GTPase-activating protein 1-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350426819|ref|XP_003494552.1| PREDICTED: rho GTPase-activating protein 1-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|332022384|gb|EGI62696.1| Rho GTPase-activating protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340716925|ref|XP_003396941.1| PREDICTED: rho GTPase-activating protein 1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340716927|ref|XP_003396942.1| PREDICTED: rho GTPase-activating protein 1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380016803|ref|XP_003692362.1| PREDICTED: rho GTPase-activating protein 1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
UNIPROTKB|A4GT58439 ARHGAP1 "Cdc42 GTPase-activati 0.929 0.724 0.512 1.5e-81
UNIPROTKB|F1MYQ4479 Bt.23349 "Uncharacterized prot 0.935 0.668 0.512 4.1e-81
UNIPROTKB|Q07960439 ARHGAP1 "Rho GTPase-activating 0.929 0.724 0.512 6.6e-81
MGI|MGI:2445003439 Arhgap1 "Rho GTPase activating 0.929 0.724 0.512 8.5e-81
UNIPROTKB|E1C874424 ARHGAP8 "Uncharacterized prote 0.935 0.754 0.503 1.1e-80
UNIPROTKB|B1AHC3564 PRR5-ARHGAP8 "Protein PRR5-ARH 0.935 0.567 0.521 1.1e-80
UNIPROTKB|F8W6F3555 ARHGAP8 "Rho GTPase-activating 0.935 0.576 0.521 1.1e-80
UNIPROTKB|P85298464 ARHGAP8 "Rho GTPase-activating 0.880 0.648 0.478 5.8e-80
UNIPROTKB|F1SIA4464 ARHGAP1 "Uncharacterized prote 0.932 0.687 0.489 1.2e-79
UNIPROTKB|F6UTR9513 ARHGAP8 "Uncharacterized prote 0.944 0.629 0.506 2.6e-79
UNIPROTKB|A4GT58 ARHGAP1 "Cdc42 GTPase-activating protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 169/330 (51%), Positives = 228/330 (69%)

Query:    15 YVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRV 74
             + LD++VE DY+L+Y H+GLTS NKPSLSWL  AYR FDRKYKKN+KALY+VHPT FI+ 
Sbjct:   110 HTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKT 169

Query:    75 VLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPT 134
             +L +FK  IS KFG+K+ Y+NYL EL  H+ L+QL IPRQV+++D+ L +     +  P 
Sbjct:   170 LLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPK 229

Query:   135 PLTSSVTNLTYSPTQQFGASLQHIKDNNGG-DVIAPILRQCVDYLSQPDALETEGLFRRS 193
             P+          P QQFG SLQH+++ N   D I  +LR+ + YL Q  AL TEG+FRRS
Sbjct:   230 PMPPRPP----LPNQQFGVSLQHLQEKNPEQDPIPLVLRETIAYL-QAHALTTEGIFRRS 284

Query:   194 ASVALVRQCQTACNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTL 251
             A+  +VR+ Q   N G P+ F  +ND+HL AV+LKTFLREL EPLLT+DLY  ++ F  L
Sbjct:   285 ANTQVVREVQQKYNMGLPVDFDQYNDLHLPAVILKTFLRELPEPLLTFDLYPHVVGF--L 342

Query:   252 NKDERSRYVKIL-ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIW 310
             N DE  R    L +L  LP +NY VL+++  FL +I  +S+LNKMT  NLAVVF PNL+W
Sbjct:   343 NIDESQRVEATLQVLRTLPEENYQVLRFLTAFLVQISAQSELNKMTNTNLAVVFGPNLLW 402

Query:   311 APVNSQLSLSAISPINSFVYFMFNNYHSIF 340
             A  ++ ++L AI+PIN+F  F+ ++   +F
Sbjct:   403 AK-DAAITLKAINPINTFTKFLLDHQGELF 431
GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA
GO:0030675 "Rac GTPase activator activity" evidence=IEA
GO:0007264 "small GTPase mediated signal transduction" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0001726 "ruffle" evidence=IEA
UNIPROTKB|F1MYQ4 Bt.23349 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q07960 ARHGAP1 "Rho GTPase-activating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2445003 Arhgap1 "Rho GTPase activating protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C874 ARHGAP8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B1AHC3 PRR5-ARHGAP8 "Protein PRR5-ARHGAP8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W6F3 ARHGAP8 "Rho GTPase-activating protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P85298 ARHGAP8 "Rho GTPase-activating protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIA4 ARHGAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F6UTR9 ARHGAP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VTU3RG68F_DROMENo assigned EC number0.44310.93850.6743yesN/A
Q5FWK3RHG01_MOUSENo assigned EC number0.51510.92980.7243yesN/A
Q07960RHG01_HUMANNo assigned EC number0.51510.92980.7243yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 3e-85
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 9e-45
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 2e-43
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 1e-40
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 3e-35
cd04402192 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP 8e-31
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 1e-28
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 3e-26
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 4e-26
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 6e-24
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 1e-23
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 7e-22
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 3e-20
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 4e-18
cd04378203 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho 9e-18
cd04408200 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase- 2e-17
cd04392208 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP 3e-17
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 3e-17
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 4e-17
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 9e-17
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 1e-16
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 2e-16
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 5e-16
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 5e-16
cd04382193 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA 1e-15
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 3e-15
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 6e-15
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 6e-15
cd04409211 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas 2e-14
cd04374203 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato 3e-14
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 2e-13
cd04380220 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas 4e-13
cd04397213 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas 7e-13
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 2e-12
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 4e-12
cd04396225 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho 5e-12
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 7e-12
cd04372194 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA 8e-12
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 8e-11
smart00516158 smart00516, SEC14, Domain in homologues of a S 9e-11
cd04388200 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac 2e-05
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information 
 Score =  255 bits (653), Expect = 3e-85
 Identities = 104/197 (52%), Positives = 141/197 (71%), Gaps = 6/197 (3%)

Query: 147 PTQQFGASLQHIKDNNGG-DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
           PTQQFG SLQ +K+ N   + I P++R+ V+YL Q  AL TEG+FRRSA+  +V++ Q  
Sbjct: 2   PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYL-QAHALTTEGIFRRSANTQVVKEVQQK 60

Query: 206 CNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
            N GEP+ F    D+HL AV+LKTFLREL EPLLT+DLYD+I+ F  ++K+ER   VK L
Sbjct: 61  YNMGEPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQL 120

Query: 264 ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAIS 323
           +   LP +NY VLKY++ FL ++   SD NKMT +NLAVVF PNL+WA  ++ +SLSAI+
Sbjct: 121 LQT-LPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK-DASMSLSAIN 178

Query: 324 PINSFVYFMFNNYHSIF 340
           PIN+F  F+ ++   IF
Sbjct: 179 PINTFTKFLLDHQDEIF 195

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
KOG4406|consensus467 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 100.0
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 100.0
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 100.0
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 100.0
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 100.0
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 100.0
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 100.0
KOG4407|consensus 1973 100.0
KOG2200|consensus 674 100.0
KOG1450|consensus650 99.97
KOG4269|consensus1112 99.97
KOG4270|consensus 577 99.97
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.97
KOG2710|consensus 412 99.96
KOG1451|consensus 812 99.95
KOG1117|consensus 1186 99.94
KOG1453|consensus 918 99.93
KOG3564|consensus604 99.92
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.9
KOG1452|consensus442 99.83
KOG4724|consensus 741 99.78
KOG4271|consensus1100 99.75
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.71
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.66
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.29
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.19
KOG3565|consensus 640 99.17
KOG4370|consensus 514 99.15
PF08101 420 DUF1708: Domain of unknown function (DUF1708); Int 98.59
KOG4724|consensus 741 98.27
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 97.93
KOG1470|consensus324 97.44
KOG1471|consensus317 97.22
KOG1453|consensus 918 96.04
KOG4271|consensus 1100 94.55
KOG1449|consensus 670 93.82
KOG1449|consensus 670 91.96
>KOG4406|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.8e-72  Score=513.88  Aligned_cols=327  Identities=49%  Similarity=0.822  Sum_probs=306.5

Q ss_pred             HHHHHHHHHhhhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHHHhHhhHhh
Q psy12161          8 ATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKF   87 (342)
Q Consensus         8 ~~~~y~~~~l~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~~~~~s~k~   87 (342)
                      +++.|++.++|++|+++|++||||+|+.+.|+|+++|+.++|+.+||+++||+|++|||||+||+|++|.+++|++|.||
T Consensus       114 ~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF  193 (467)
T KOG4406|consen  114 RLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKF  193 (467)
T ss_pred             HHHHHHHHHHHHHHhccceeeehhcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcceeeccchHHHHhcccccccCCChHHHHHHHHHHhhhcCCCCCCC-CCCCCCCcCCCCCCCccCCChhHhhhhC-CCC
Q psy12161         88 GRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPT-PLTSSVTNLTYSPTQQFGASLQHIKDNN-GGD  165 (342)
Q Consensus        88 ~~Ki~~~~~L~~L~~~i~~~ql~iP~~v~~~d~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~FG~~L~~l~~~~-~~~  165 (342)
                      .+|++|+++++||.++|..+++.+|..|++||..+.... ++.++++ ..+++++   +.++++||++|+.+.+.. .+.
T Consensus       194 ~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~~D~~~~s~~-~~~a~~p~~~~~pr~---pl~t~qFgvpLqf~~~~~~e~~  269 (467)
T KOG4406|consen  194 TRKIIYFNSLSELFEALKLNRLKLPPEVLKHDDKLLSKA-KTPAPPPEKMTPPRP---PLPTQQFGVPLQFIPEKNPEGE  269 (467)
T ss_pred             hceeEEeehHHHHHHhhhhhhhcCChhhhhhhhcccccc-cCCCCCcccCCCCCC---CCchhhcCccHHHhcccCcccC
Confidence            999999999999999999999999999999999987653 2222222 3355555   899999999999998876 578


Q ss_pred             CCcHHHHHHHHHHhCCCC-cccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHhCCCCCCChHhH
Q psy12161        166 VIAPILRQCVDYLSQPDA-LETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDLY  242 (342)
Q Consensus       166 ~iP~vl~~~i~~l~~~~g-l~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~llK~fLr~Lp~pLi~~~~~  242 (342)
                      .||++++.|+++|.. +| +++||+||+|+|...+.++++.+++|++++++.  |+|+.|+++|.|+|+||+||++.++|
T Consensus       270 ~iPpiv~~tV~~L~~-~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~avllKtF~R~LpePL~t~~~y  348 (467)
T KOG4406|consen  270 SIPPIVRSTVEYLQA-HGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAPAVLLKTFLRSLPEPLLTFRLY  348 (467)
T ss_pred             CCCcHHHHHhhhhhc-cceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhhHHHHHHHHhcCCcccchhhhh
Confidence            899999999999999 88 999999999999999999999999999999988  79999999999999999999999999


Q ss_pred             HHHHccCCCChhHHHHHHHHHHHhh-CCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhh
Q psy12161        243 DEILLFPTLNKDERSRYVKILILEK-LPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSA  321 (342)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~ll~~-Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~  321 (342)
                      +.+....+.+..++.. .++++++. ||++|+.++++++.||.+|++|+.+|+||+.|||+||||+|+|+. +...++.+
T Consensus       349 ~~lt~~~~~~~~~~s~-s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~-~~s~tl~q  426 (467)
T KOG4406|consen  349 ESLTGFSNVDKSLRSS-STDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQ-DESLTLKQ  426 (467)
T ss_pred             hhhhccccchHHhhhh-HHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccc-cccccHHH
Confidence            9999988888777777 68888887 999999999999999999999999999999999999999999999 88899999


Q ss_pred             hchHHHHHHHHHhccccccc
Q psy12161        322 ISPINSFVYFMFNNYHSIFI  341 (342)
Q Consensus       322 ~~~~~~~v~~lI~~~~~iF~  341 (342)
                      ..+++.|.+++|+||+++|.
T Consensus       427 ~npin~F~~~li~~~~~~f~  446 (467)
T KOG4406|consen  427 INPINKFTKFLIEHYKKLFT  446 (467)
T ss_pred             hccHHHHHHHHHHhhhhccC
Confidence            99999999999999999995

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>KOG4407|consensus Back     alignment and domain information
>KOG2200|consensus Back     alignment and domain information
>KOG1450|consensus Back     alignment and domain information
>KOG4269|consensus Back     alignment and domain information
>KOG4270|consensus Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG2710|consensus Back     alignment and domain information
>KOG1451|consensus Back     alignment and domain information
>KOG1117|consensus Back     alignment and domain information
>KOG1453|consensus Back     alignment and domain information
>KOG3564|consensus Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>KOG1452|consensus Back     alignment and domain information
>KOG4724|consensus Back     alignment and domain information
>KOG4271|consensus Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>KOG3565|consensus Back     alignment and domain information
>KOG4370|consensus Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>KOG4724|consensus Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG1470|consensus Back     alignment and domain information
>KOG1471|consensus Back     alignment and domain information
>KOG1453|consensus Back     alignment and domain information
>KOG4271|consensus Back     alignment and domain information
>KOG1449|consensus Back     alignment and domain information
>KOG1449|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 2e-48
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 4e-45
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 5e-45
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 6e-45
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 1e-44
3msx_B201 Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With 2e-17
3eap_A271 Crystal Structure Of The Rhogap Domain Of Arhgap11a 1e-16
3byi_A214 Crystal Structure Of Human Rho Gtpase Activating Pr 2e-13
3iug_A229 Crystal Structure Of The Rhogap Domain Of Rics Leng 2e-12
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 2e-12
1xa6_A466 Crystal Structure Of The Human Beta2-Chimaerin Leng 7e-10
3kuq_A228 Crystal Structure Of The Dlc1 Rhogap Domain Length 9e-10
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 1e-09
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 1e-09
3cxl_A463 Crystal Structure Of Human Chimerin 1 (Chn1) Length 2e-08
2osa_A202 The Rho-Gap Domain Of Human N-Chimaerin Length = 20 4e-08
1f7c_A231 Crystal Structure Of The Bh Domain From Graf, The G 4e-08
2ovj_A201 The Crystal Structure Of The Human Rac Gtpase Activ 1e-07
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 156/242 (64%), Gaps = 12/242 (4%)
Query: 103 HLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNN 162
           H+ L+QL IPRQV+++D+ L  K ++ S  P      +      P QQFG SLQH+++ N
Sbjct: 1   HVKLEQLGIPRQVLKYDDFL--KSTQKS--PATAPKPMPPRPPLPNQQFGVSLQHLQEKN 56
Query: 163 GGDVIAPI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF--HNDIH 219
                 PI LR+ V YL Q  AL TEG+FRRSA+  +VR+ Q   N G P+ F  +N++H
Sbjct: 57  PEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115
Query: 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL-ILEKLPTDNYTVLKY 278
           L AV+LKTFLREL EPLLT+DLY  ++ F  LN DE  R    L +L+ LP +NY VL++
Sbjct: 116 LPAVILKTFLRELPEPLLTFDLYPHVVGF--LNIDESQRVPATLQVLQTLPEENYQVLRF 173
Query: 279 IVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHS 338
           +  FL +I   SD NKMT  NLAVVF PNL+WA  ++ ++L AI+PIN+F  F+ ++   
Sbjct: 174 LTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA-KDAAITLKAINPINTFTKFLLDHQGE 232
Query: 339 IF 340
           +F
Sbjct: 233 LF 234
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201 Back     alignment and structure
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271 Back     alignment and structure
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214 Back     alignment and structure
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229 Back     alignment and structure
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466 Back     alignment and structure
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228 Back     alignment and structure
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463 Back     alignment and structure
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202 Back     alignment and structure
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231 Back     alignment and structure
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 2e-76
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 1e-67
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 1e-63
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 7e-58
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 8e-57
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 3e-50
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 5e-47
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 6e-46
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 2e-45
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 3e-45
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 3e-44
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 1e-43
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 1e-42
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 8e-40
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 4e-35
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 1e-30
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 3e-30
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 5e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242 Back     alignment and structure
 Score =  233 bits (597), Expect = 2e-76
 Identities = 103/241 (42%), Positives = 151/241 (62%), Gaps = 10/241 (4%)

Query: 103 HLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQ-HIKDN 161
           H+ L+QL IPRQV+++D+ L +     +  P P+          P QQFG SLQ   + N
Sbjct: 1   HVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPR----PPLPNQQFGVSLQHLQEKN 56

Query: 162 NGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF--HNDIH 219
              + I  +LR+ V YL    AL TEG+FRRSA+  +VR+ Q   N G P+ F  +N++H
Sbjct: 57  PEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115

Query: 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYI 279
           L AV+LKTFLREL EPLLT+DLY  ++ F  +++ +R      ++ + LP +NY VL+++
Sbjct: 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL-QTLPEENYQVLRFL 174

Query: 280 VTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSI 339
             FL +I   SD NKMT  NLAVVF PNL+WA  ++ ++L AI+PIN+F  F+ ++   +
Sbjct: 175 TAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAINPINTFTKFLLDHQGEL 233

Query: 340 F 340
           F
Sbjct: 234 F 234
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198 Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271 Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209 Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214 Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228 Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216 Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201 Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 100.0
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.93
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.81
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 98.57
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 98.52
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 98.46
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 98.41
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 98.14
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
Probab=100.00  E-value=2.5e-49  Score=357.62  Aligned_cols=232  Identities=44%  Similarity=0.757  Sum_probs=179.6

Q ss_pred             cccccccCCChHHHHHHHHHHhhhcCCCCCCCCCCCCCCcCCCCCCCccCCChhHhhhhCC-CCCCcHHHHHHHHHHhCC
Q psy12161        103 HLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNG-GDVIAPILRQCVDYLSQP  181 (342)
Q Consensus       103 ~i~~~ql~iP~~v~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~~L~~l~~~~~-~~~iP~vl~~~i~~l~~~  181 (342)
                      |++++|+.||..|++||..+...+ +..+.+.++.++++   +.+.++||++|++++.+.+ +..||.++.+|+++|++ 
T Consensus         1 ~~~~~ql~ip~~v~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~-   75 (242)
T 1ow3_A            1 HVKLEQLGIPRQVLKYDDFLKSTQ-KSPATAPKPMPPRP---PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-   75 (242)
T ss_dssp             ------------------------------------------CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHH-
T ss_pred             CCChhhcCCCHHHHHHHHHHHhcc-cCCCCCCCCCCCCC---CCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHH-
Confidence            578899999999999999887664 22222222223333   6778999999999998853 24899999999999999 


Q ss_pred             CCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHH
Q psy12161        182 DALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRY  259 (342)
Q Consensus       182 ~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~  259 (342)
                      +|+++|||||++|+...++++++.+|+|..+++++  |+|++|++||.|||+||+||+|.++|+.++++.+.++++++. 
T Consensus        76 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~-  154 (242)
T 1ow3_A           76 HALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVP-  154 (242)
T ss_dssp             HCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHH-
T ss_pred             cCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHH-
Confidence            99999999999999999999999999999888865  999999999999999999999999999999987777777777 


Q ss_pred             HHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccc
Q psy12161        260 VKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSI  339 (342)
Q Consensus       260 ~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~i  339 (342)
                      .++.++.+||+.|+.+|.+|+.||++|+++++.||||++|||+||||+|+|++ +....+.++...+.++++||+||+.|
T Consensus       155 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~-~~~~~~~~~~~~~~~v~~LI~~~~~i  233 (242)
T 1ow3_A          155 ATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAINPINTFTKFLLDHQGEL  233 (242)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCS-SHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCC-CccccHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999998 55566777788899999999999999


Q ss_pred             cc
Q psy12161        340 FI  341 (342)
Q Consensus       340 F~  341 (342)
                      |.
T Consensus       234 F~  235 (242)
T 1ow3_A          234 FP  235 (242)
T ss_dssp             C-
T ss_pred             cC
Confidence            95
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 3e-42
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 8e-36
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 4e-34
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 4e-31
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 5e-06
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 3e-42
 Identities = 92/197 (46%), Positives = 131/197 (66%), Gaps = 6/197 (3%)

Query: 147 PTQQFGASLQHIKDNNG-GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
           P QQFG SLQH+++ N   + I  +LR+ V YL    AL TEG+FRRSA+  +VR+ Q  
Sbjct: 3   PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQK 61

Query: 206 CNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
            N G P+ F  +N +HL AV+LKTFLREL EPLLT+DLY  ++ F  +++ +R       
Sbjct: 62  YNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-Q 120

Query: 264 ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAIS 323
           +L+ LP +NY VL+++  FL +I   SD NKMT  NLAVVF PNL+WA  ++ ++L AI+
Sbjct: 121 VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAIN 179

Query: 324 PINSFVYFMFNNYHSIF 340
           PIN+F  F+ ++   +F
Sbjct: 180 PINTFTKFLLDHQGELF 196
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 98.47
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 98.4
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 98.19
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-43  Score=307.00  Aligned_cols=193  Identities=47%  Similarity=0.823  Sum_probs=179.2

Q ss_pred             CCCCCccCCChhHhhhhC-CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHH
Q psy12161        145 YSPTQQFGASLQHIKDNN-GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLA  221 (342)
Q Consensus       145 ~~~~~~FG~~L~~l~~~~-~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~v  221 (342)
                      |.++++||+||+++++++ .+..||.++.+|++||++ +|+++|||||++|+...++++++.+|+|...++.+  |+|++
T Consensus         1 p~~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~-~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~v   79 (196)
T d1tx4a_           1 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP   79 (196)
T ss_dssp             CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHH-HCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred             CCCCCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHH-cCCCCCCeeecCCcHHHHHHHHHHHhCCCCccccccccHHHH
Confidence            456789999999998875 456799999999999999 99999999999999999999999999999888876  89999


Q ss_pred             HHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhh
Q psy12161        222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA  301 (342)
Q Consensus       222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa  301 (342)
                      |++||.|||+||+||+|.+.|+.++++.+..+.+++. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||
T Consensus        80 a~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa  158 (196)
T d1tx4a_          80 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVP-ATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA  158 (196)
T ss_dssp             HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHH-HHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHhcChHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            9999999999999999999999999988777777777 799999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccc
Q psy12161        302 VVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF  340 (342)
Q Consensus       302 ~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF  340 (342)
                      +||||+|+|++ +.....++....+.++++||+||+.||
T Consensus       159 ~~f~P~l~~~~-~~~~~~~~~~~~~~~~~~LI~~~~~iF  196 (196)
T d1tx4a_         159 VVFGPNLLWAK-DAAITLKAINPINTFTKFLLDHQGELF  196 (196)
T ss_dssp             HHHHHHHCCCS-SHHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHhhhhcCCC-CcchhHHHHHHHHHHHHHHHHhHHhhC
Confidence            99999999998 555666777888999999999999998
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure