Psyllid ID: psy1216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MYKTEDNLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQRPVSKYKELVNDPDEQTVYSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIHKSTGSLHKTKLHLSSDRLNRKFNRSTDSLDSEARASTSREQPQKGQQVYQLQKDYQPYQTDNQRSLFETTHTKSYKHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTTKVKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNAVSNGQNENMTCLDDSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHccccccEEEEEEEHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEcccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEcccccHHHHHccccccccccHHHHHccccccccccccHHHHcccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEccccEEEccccccccccEEEEEEcccEEEEEEEEEcccHHHHHHHHHccEEEccccccEEEEEccccccccccccccccccccccccccccccccHHHHHccccccHHHHHccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEccccccccEEEEEEEcccccccEEEcccccEEccccccccEEEEccccccHHHHHHHHHccccEEEccEEEEccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHccccccEEEccccccccccccccHHHHHcEEEEccccccccHHHHHHcccccccEEEEccccHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEccccHHHHHccccccccccHHHccccccccccccHHHHHHcccccccccccccHHHccccccccEEcccccccccccccccccHHcHHHHHHccccccccccccccccccccEEEEcccccccHHHHHHccHcccHHHHHHHHHcHHHHHHHcccccEEEEEccEEEEcccEEEcccccccccccEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHcccccccHHHHHHHHcHcccccccccccccccccccccccccHHHHHHcccccHHHHHccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccHHccccccHHccccccccccEEEEEEccHHHHHccEEcEEEEEEEccccccccHHHEHHHHHcEEEEEEEcccccEEccccccccEHHEccccccHHHHHHHHHcccccccccEEEEccEEEEEccccEccccc
Coil and Loop (DISEMBL)
MYKTEDNLLYHRKLFIRKLWKELkvgtdctfsflctrqslerkktnnvdrirtnipvqtngrktphkaafdnliytetekqrpvskykelvndpdeqtvysktqseerkskslttssvspeqRESWKYIVEEIDDQIHkstgslhktklhlssdrlnrkfnrstdsldsearastsreqpqkgQQVYQLQkdyqpyqtdnqrslfetthtksykhikhgtgdfsegtnvdpddveDVEEIVMENRnvdanfdrrtsryssqefvetrrvDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLvcdskvkcvptrqecdtqnirttkvkgkeTKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNavsngqnenmtclddspsskeaspvteeellrkpyitpedvlclnhitenylcspdaniyEIEFLRfkirdidsntvlfeiakpantastpsstpgnnaespesqgdrnstshdtqannipkdpntgrfvryqftpkflnlknigatitfsigdfeINNFRMIEKhyfndtvhlktfdfnfgycipnsintcehiyvfpnlsksltqemidnpfhtksdsfyfinnklfmhnkaeysyngv
Flexible Loop (DISEMBL)
myktednllyhRKLFIRKLWKELKVGTDCtfsflctrqslerkktnnvdrirtnipvqtngrktphkaafdnliytetekqrpvskykelvndpdeqtvysktqseerkskslttssvspeqreSWKYIVEEIDDQIHkstgslhktklhlssdrlnrkfnrstdsldsearastsreqpqkgqqVYQLQKDYQPYQTDNQRSLFETTHTKsykhikhgtgdfsegtnvDPDDVEDVEEIVMenrnvdanfdrrtsryssqefvetrrvdektyeerkmnlktmnttsLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKvkcvptrqecdtqnirttkvkgketkykINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNAVSNGQnenmtclddspsskEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPantastpsstpgnNAESPESQGDrnstshdtqannipkdpntgrFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKaeysyngv
Low Complexity Region (SEG)
MYKTEDNLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQRPVSKYKELVNDPDEQTVYSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIHKSTGSLHKTKLHLSSDRLNRKFNRSTDSLDSEARASTSREQPQKGQQVYQLQKDYQPYQTDNQRSLFETTHTKSYKHIKHGTGDFSEGTNvdpddvedveeivmeNRNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTTKVKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNAVSNGQNENMTCLDDSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV
Disordered region (IsUnstruct)
******NLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQSL**********I*****************AFDNLIY**************************************************WKYIVEEI******************************************************************************************************************************************************MNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTTKVKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERV***********************************LRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIA********************************************GRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKA*******
Disordered Region (DISOPRED)
***T*DNLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQS***********IRTNIPVQ****KTPHKAAFDNLIYTETEK*****K***LVNDP*******************************WKYIVEEIDDQIHKSTGSLHKTKLHLSSDR************************************DYQPYQTDNQRSLFETTHTKSYKHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRY****FV***RV*****EERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDT**I****VKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISE*********************************************YITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAK**********************************NNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV
Disordered Region (DISEMBL)
MYKTEDNLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQRPVSKYKELVNDPDE**************************RESWKYIVEEIDDQIHKSTGSLHKTKLHLSSDRLNRKFNRS*************************LQKDYQPYQTDNQRSLFETTHTKSYKHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTTKVKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNAVSNGQNENMT*****************ELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPA*******************************ANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV
Disordered Region (DISPRO)
MYKTEDNLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQRPVSKYKELVNDPDEQTVYSK********************RESWKYIVEEIDDQIHKSTGSLHKT**HLS******************************GQQVYQLQKDYQPYQTDNQRSLFETTHTKSYKHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTTKVKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMN******************************LRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPAN*********************************IPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKTEDNLLYHRKLFIRKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQRPVSKYKELVNDPDEQTVYSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIHKSTGSLHKTKLHLSSDRLNRKFNRSTDSLDSEARASTSREQPQKGQQVYQLQKDYQPYQTDNQRSLFETTHTKSYKHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTTKVKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNAVSNGQNENMTCLDDSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	628	2.2.26 [Sep-21-2011]
Q8C4B4	251	Protein unc-119 homolog B	yes	N/A	0.321	0.804	0.511	7e-64
O19177	240	Protein unc-119 homolog A	yes	N/A	0.294	0.770	0.549	7e-62
Q66JA9	242	Protein unc-119 homolog B	N/A	N/A	0.308	0.801	0.520	1e-61
Q13432	240	Protein unc-119 homolog A	yes	N/A	0.294	0.770	0.549	1e-61
Q3SYR2	240	Protein unc-119 homolog A	yes	N/A	0.294	0.770	0.549	2e-61
Q9Z2R6	240	Protein unc-119 homolog A	no	N/A	0.285	0.745	0.551	2e-61
Q62885	240	Protein unc-119 homolog A	no	N/A	0.285	0.745	0.551	2e-61
A6NIH7	251	Protein unc-119 homolog B	no	N/A	0.312	0.780	0.520	2e-60
Q9XYQ2	265	Protein unc-119 homolog O	yes	N/A	0.307	0.728	0.553	1e-59
Q17297	217	Protein unc-119 OS=Caenor	N/A	N/A	0.308	0.894	0.517	3e-59

>sp|Q8C4B4|U119B_MOUSE Protein unc-119 homolog B OS=Mus musculus GN=Unc119b PE=2 SV=1

 Score =  245 bits (626), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 152/225 (67%), Gaps = 23/225 (10%)

Query: 403 SPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSN 462
           +P     + VTE+ELL    I PE VL LN +TENYLC P+ N+Y I+F RFKIRD+++ 
Sbjct: 48  TPDDGSGAAVTEQELLALDTIRPEHVLRLNRVTENYLCKPEDNVYSIDFTRFKIRDLETG 107

Query: 463 TVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFT 522
           TVLFEIAKP  +                          D +  ++  D + GRFVRYQFT
Sbjct: 108 TVLFEIAKPCIS----------------------DQDQDAEEESVDVDISVGRFVRYQFT 145

Query: 523 PKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
           P FL L+ +GAT+ F++GD  +  FRMIE+HYF + + LKTFDF+FG+CIP+S NTCEHI
Sbjct: 146 PAFLRLRTVGATVEFTVGDRPVTGFRMIERHYFRERL-LKTFDFDFGFCIPSSRNTCEHI 204

Query: 583 YVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           Y FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 205 YEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLVMHNKADYAYNG 249

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated NPHP3 and plays a key role in localization of NPHP3 to the primary cilium membrane. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.
Mus musculus (taxid: 10090)

>sp|O19177|U119A_CANFA Protein unc-119 homolog A OS=Canis familiaris GN=UNC119 PE=2 SV=2

 Score =  239 bits (609), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)

Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
           L RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +  
Sbjct: 54  LQRKQRIGPEDVLGLQRITGDYLCSPEENIYKIDFIRFKIRDMDSGTVLFEIKKPPASER 113

Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
            P                          N    DPN GRFVRYQFTP FL L+ +GAT+ 
Sbjct: 114 LP-------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148

Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
           F++GD  +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELINEM 207

Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated GNAT1 and is required for G-protein localization and trafficking in sensory neurons. Binds myristoylated NPHP3; however, in contrast to UNC119B, does not seem to play a major role in ciliary membrane localization of NPHP3. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.

Canis familiaris (taxid: 9615)

>sp|Q66JA9|U19BA_XENLA Protein unc-119 homolog B-A OS=Xenopus laevis GN=unc119b-a PE=2 SV=1

 Score =  238 bits (607), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/219 (52%), Positives = 148/219 (67%), Gaps = 25/219 (11%)

Query: 409 ASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEI 468
            +P  EEELL    + PE VL L+ +TENYLC P+ NIY I+F RFKIRD+++ TVLFEI
Sbjct: 47  VTPFREEELLGLNQLRPEHVLGLSRVTENYLCKPEDNIYGIDFTRFKIRDLETGTVLFEI 106

Query: 469 AKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNL 528
           +KP +                       ST  D  A         GRFVRYQFTP FL L
Sbjct: 107 SKPCSEQEEEEEE---------------STHLDASA---------GRFVRYQFTPAFLRL 142

Query: 529 KNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNL 588
           + +GAT+ F++GD  + +FRMIE+HYF D + LK+FDF+FG+CIPNS NTCEH+Y FP L
Sbjct: 143 RKVGATVEFTVGDKPVKSFRMIERHYFRDHI-LKSFDFDFGFCIPNSRNTCEHMYEFPQL 201

Query: 589 SKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           S+ L ++M +NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 202 SEELIRQMTENPYETRSDSFYFVDNKLIMHNKADYAYNG 240

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Plays a key role in localization of proteins to the primary cilium membrane.

Xenopus laevis (taxid: 8355)

>sp|Q13432|U119A_HUMAN Protein unc-119 homolog A OS=Homo sapiens GN=UNC119 PE=1 SV=1

 Score =  238 bits (606), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)

Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
           L RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +  
Sbjct: 54  LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSER 113

Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
            P                          N    DPN GRFVRYQFTP FL L+ +GAT+ 
Sbjct: 114 LP-------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148

Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
           F++GD  +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEM 207

Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated GNAT1 and is required for G-protein localization and trafficking in sensory neurons. Binds myristoylated NPHP3; however, in contrast to UNC119B, does not seem to play a major role in ciliary membrane localization of NPHP3. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.

Homo sapiens (taxid: 9606)

>sp|Q3SYR2|U119A_BOVIN Protein unc-119 homolog A OS=Bos taurus GN=UNC119 PE=1 SV=1

 Score =  238 bits (606), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)

Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
           L RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +  
Sbjct: 54  LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPASER 113

Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
            P                          N    DPN GRFVRYQFTP FL L+ +GAT+ 
Sbjct: 114 LP-------------------------INPRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148

Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
           F++GD  +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPALSEELINEM 207

Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated GNAT1 and is required for G-protein localization and trafficking in sensory neurons. Binds myristoylated NPHP3; however, in contrast to UNC119B, does not seem to play a major role in ciliary membrane localization of NPHP3. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.

Bos taurus (taxid: 9913)

>sp|Q9Z2R6|U119A_MOUSE Protein unc-119 homolog A OS=Mus musculus GN=Unc119 PE=1 SV=1

 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 143/205 (69%), Gaps = 26/205 (12%)

Query: 423 ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
           I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +   P    
Sbjct: 60  IGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP---- 115

Query: 483 GNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDF 542
                                 N    DPN GRFVRYQFTP FL L+ +GAT+ F++GD 
Sbjct: 116 ---------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDK 154

Query: 543 EINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFH 602
            +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EMI +P+ 
Sbjct: 155 PVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYE 213

Query: 603 TKSDSFYFINNKLFMHNKAEYSYNG 627
           T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 214 TQSDSFYFVDDRLVMHNKADYSYSG 238

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated GNAT1 and is required for G-protein localization and trafficking in sensory neurons. Binds myristoylated NPHP3; however, in contrast to UNC119B, does not seem to play a major role in ciliary membrane localization of NPHP3. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.

Mus musculus (taxid: 10090)

>sp|Q62885|U119A_RAT Protein unc-119 homolog A OS=Rattus norvegicus GN=Unc119 PE=1 SV=1

 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 143/205 (69%), Gaps = 26/205 (12%)

Query: 423 ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
           I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +   P    
Sbjct: 60  IGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP---- 115

Query: 483 GNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDF 542
                                 N    DPN GRFVRYQFTP FL L+ +GAT+ F++GD 
Sbjct: 116 ---------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDK 154

Query: 543 EINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFH 602
            +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EMI +P+ 
Sbjct: 155 PVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYE 213

Query: 603 TKSDSFYFINNKLFMHNKAEYSYNG 627
           T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 214 TQSDSFYFVDDRLVMHNKADYSYSG 238

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated GNAT1 and is required for G-protein localization and trafficking in sensory neurons. Binds myristoylated NPHP3; however, in contrast to UNC119B, does not seem to play a major role in ciliary membrane localization of NPHP3. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.

Rattus norvegicus (taxid: 10116)

>sp|A6NIH7|U119B_HUMAN Protein unc-119 homolog B OS=Homo sapiens GN=UNC119B PE=1 SV=1

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/219 (52%), Positives = 149/219 (68%), Gaps = 23/219 (10%)

Query: 409 ASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEI 468
            + VTE+ELL    I PE VL L+ +TENYLC P+ NIY I+F RFKIRD+++ TVLFEI
Sbjct: 54  GAAVTEQELLALDTIRPEHVLRLSRVTENYLCKPEDNIYSIDFTRFKIRDLETGTVLFEI 113

Query: 469 AKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNL 528
           AKP  +                          D +      D + GRFVRYQFTP FL L
Sbjct: 114 AKPCVS----------------------DQEEDEEEGGGDVDISAGRFVRYQFTPAFLRL 151

Query: 529 KNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNL 588
           + +GAT+ F++GD  ++NFRMIE+HYF + + LK FDF+FG+CIP+S NTCEHIY FP L
Sbjct: 152 RTVGATVEFTVGDKPVSNFRMIERHYFREHL-LKNFDFDFGFCIPSSRNTCEHIYEFPQL 210

Query: 589 SKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           S+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 211 SEDVIRLMIENPYETRSDSFYFVDNKLIMHNKADYAYNG 249

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Binds myristoylated NPHP3 and plays a key role in localization of NPHP3 to the primary cilium membrane. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.

Homo sapiens (taxid: 9606)

>sp|Q9XYQ2|UN119_DROME Protein unc-119 homolog OS=Drosophila melanogaster GN=unc-119 PE=2 SV=1

 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 143/206 (69%), Gaps = 13/206 (6%)

Query: 423 ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
           +TP++VL L  IT++YLCS +AN++EI+F RFKIRD++S  VLFEIAKP      PS   
Sbjct: 68  VTPDEVLHLTKITDDYLCSANANVFEIDFTRFKIRDLESGAVLFEIAKP------PSEQY 121

Query: 483 GNNAESPESQ-GDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGD 541
                S E+        S D  A     DPN GR+VRYQFTP FLNLK +GAT+ F++G 
Sbjct: 122 PEGLSSDETMLAAAEKLSLDDTA-----DPNAGRYVRYQFTPAFLNLKTVGATVEFTVGS 176

Query: 542 FEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPF 601
             +NNFRMIE+H+F D + LKTFDF FG+C P S NT EHIY FPNL   L  EMI +PF
Sbjct: 177 QPLNNFRMIERHFFRDRL-LKTFDFEFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPF 235

Query: 602 HTKSDSFYFINNKLFMHNKAEYSYNG 627
            T+SDSFYF+ N+L MHNKA+Y+Y+G
Sbjct: 236 ETRSDSFYFVGNRLVMHNKADYAYDG 261

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization.

Drosophila melanogaster (taxid: 7227)

>sp|Q17297|UN119_CAEBR Protein unc-119 OS=Caenorhabditis briggsae GN=unc-119 PE=3 SV=2

 Score =  230 bits (586), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 144/224 (64%), Gaps = 30/224 (13%)

Query: 404 PSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNT 463
           P S E    TE EL +K  ITP DVL L  IT+ +LCSP ANIY IEF +F+IRD+D+  
Sbjct: 24  PPSTEQGITTESELAKKAQITPNDVLALPGITQGFLCSPSANIYNIEFTKFQIRDLDTEQ 83

Query: 464 VLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTP 523
           VLFEIAKP N           N ESP+                      + R+VRY+F P
Sbjct: 84  VLFEIAKPENDQE--------NDESPQE---------------------SARYVRYRFAP 114

Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIY 583
            FL LK +GAT+ F +GD  I++FRMIE+H+F D + LK FDF FG+CIPNS N CEHIY
Sbjct: 115 NFLKLKTVGATVEFKVGDIPIHHFRMIERHFFKDRL-LKCFDFEFGFCIPNSRNNCEHIY 173

Query: 584 VFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
            FP LS+ L  +MI+NP  T+SDSFYF++NKL MHNKA+YSY+ 
Sbjct: 174 EFPQLSQQLMDDMINNPNETRSDSFYFVDNKLVMHNKADYSYDA 217

Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N-terminally myristoylated proteins and is required for their localization. Plays a key role in ciliary membrane localization of proteins. Required for the establishment or function of the nervous system.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
346470983	242	hypothetical protein [Amblyomma maculatu	0.329	0.855	0.579	1e-69
427787615	242	Putative photoreceptor synaptic vesicle	0.329	0.855	0.566	2e-67
291235576	229	PREDICTED: unc119 (C.elegans) homolog [S	0.307	0.842	0.592	2e-67
260791424	226	hypothetical protein BRAFLDRAFT_89535 [B	0.305	0.849	0.583	9e-67
241999426	235	retinal protein, putative [Ixodes scapul	0.318	0.851	0.575	1e-66
160774111	256	unc119 protein [Xenopus (Silurana) tropi	0.307	0.753	0.557	3e-65
348518854	256	PREDICTED: protein unc-119 homolog A-lik	0.345	0.847	0.528	5e-64
242010877	234	retinal protein, putative [Pediculus hum	0.353	0.948	0.532	9e-64
157117748	251	retinal protein [Aedes aegypti] gi|10888	0.377	0.944	0.505	1e-63
224076387	291	PREDICTED: protein unc-119 homolog A [Ta	0.300	0.649	0.562	2e-63

>gi|346470983|gb|AEO35336.1| hypothetical protein [Amblyomma maculatum]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 162/226 (71%), Gaps = 19/226 (8%)

Query: 402 DSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDS 461
           D P+  E  P+TEEEL +K +I+PEDVL L  ITE YLCSPDAN+Y+I+F RFKIRD++S
Sbjct: 31  DHPADLE--PITEEELAKKEFISPEDVLRLQKITEGYLCSPDANVYDIDFTRFKIRDMES 88

Query: 462 NTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQF 521
             VLFEIAKP    STP        + PES+                +DPN GRFVRYQF
Sbjct: 89  GMVLFEIAKPP-PPSTPDGDDAGEEQPPESEC---------------QDPNAGRFVRYQF 132

Query: 522 TPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEH 581
           TP+FL LK +GAT+ F++G   ++ FRMIE+H+F D + LKTFDF FG+CIPNS NTCEH
Sbjct: 133 TPQFLKLKTVGATVEFTVGSKPVSKFRMIERHFFRDKL-LKTFDFEFGFCIPNSKNTCEH 191

Query: 582 IYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           IY FP LS+ L  EMI NPF T+SDSFYF+++KL MHNKA+Y+YNG
Sbjct: 192 IYEFPTLSQELCDEMIANPFETRSDSFYFVDDKLIMHNKADYAYNG 237

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787615|gb|JAA59259.1| Putative photoreceptor synaptic vesicle protein [Rhipicephalus pulchellus]

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 160/226 (70%), Gaps = 19/226 (8%)

Query: 402 DSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDS 461
           D P+  E  P+TE+EL +K  I+PEDVL L  ITE YLC+PDAN+Y+I+F RFKIRD++S
Sbjct: 31  DHPADLE--PITEDELAKKDSISPEDVLRLQKITEGYLCAPDANVYDIDFTRFKIRDMES 88

Query: 462 NTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQF 521
             VLFEIAKP      P STP           D +    +        DPN GRFVRYQF
Sbjct: 89  GMVLFEIAKPP-----PPSTP-----------DGDDAGEEQPLEGECPDPNAGRFVRYQF 132

Query: 522 TPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEH 581
           TP+FL LK +GAT+ F++G   ++ FRMIE+H+F D + LKTFDF FG+CIPNS NTCEH
Sbjct: 133 TPQFLKLKTVGATVEFTVGSKPVSKFRMIERHFFRDKL-LKTFDFEFGFCIPNSKNTCEH 191

Query: 582 IYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           IY FP+LS+ L  EMI NPF T+SDSFYF+++KL MHNKA+Y+YNG
Sbjct: 192 IYEFPSLSQDLCDEMIANPFETRSDSFYFVDDKLIMHNKADYAYNG 237

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291235576|ref|XP_002737712.1| PREDICTED: unc119 (C.elegans) homolog [Saccoglossus kowalevskii]

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/216 (59%), Positives = 158/216 (73%), Gaps = 23/216 (10%)

Query: 412 VTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKP 471
           +TEE+LL K  ++P+DVL L   TENYLC PDAN ++I+F RFKIRD+DS TVLFEIAKP
Sbjct: 32  ITEEDLLEKKDVSPDDVLKLIRCTENYLCEPDANSFDIDFTRFKIRDMDSGTVLFEIAKP 91

Query: 472 ANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNI 531
                 P S   ++ ES   +                 DPN GRFVRYQFTP+FL LKN+
Sbjct: 92  ------PPSEEEDDVESDPDE----------------MDPNAGRFVRYQFTPQFLKLKNV 129

Query: 532 GATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKS 591
           GAT+ F++GD  +NNFRMIE+HYF + + LK+FDFNFG+CIPNS NTCEHIY FP+L+  
Sbjct: 130 GATVEFTVGDKPVNNFRMIERHYFGERL-LKSFDFNFGFCIPNSKNTCEHIYEFPDLTPE 188

Query: 592 LTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             QEMIDNPF T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 189 EVQEMIDNPFDTRSDSFYFVDNKLIMHNKADYAYNG 224

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|260791424|ref|XP_002590729.1| hypothetical protein BRAFLDRAFT_89535 [Branchiostoma floridae] gi|229275925|gb|EEN46740.1| hypothetical protein BRAFLDRAFT_89535 [Branchiostoma floridae]

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 126/216 (58%), Positives = 159/216 (73%), Gaps = 24/216 (11%)

Query: 412 VTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKP 471
           +TEEELL+K  I+PEDVL L  +TENYLC P+AN+++I+F RFKIRD+DS TVLFEIAKP
Sbjct: 30  ITEEELLQKDNISPEDVLKLPKVTENYLCEPEANVFQIDFTRFKIRDMDSGTVLFEIAKP 89

Query: 472 ANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNI 531
                            P S+ D      D +A +I  DPN GRFVRYQFTP+FL L+ +
Sbjct: 90  -----------------PPSEDD----EPDAEAEDI--DPNAGRFVRYQFTPQFLKLRTV 126

Query: 532 GATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKS 591
           GAT+ F++GD  ++ FRMIE+HYF + + LK+FDFNFG+CIPNS NTCEHIY FP L+  
Sbjct: 127 GATVEFTVGDKPVSQFRMIERHYFRERL-LKSFDFNFGFCIPNSKNTCEHIYEFPELAPD 185

Query: 592 LTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             QEMID+P+ TKSDSFYF++N L MHNKA+Y+YNG
Sbjct: 186 QIQEMIDHPYETKSDSFYFVDNNLIMHNKADYAYNG 221

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|241999426|ref|XP_002434356.1| retinal protein, putative [Ixodes scapularis] gi|215497686|gb|EEC07180.1| retinal protein, putative [Ixodes scapularis]

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 161/226 (71%), Gaps = 26/226 (11%)

Query: 402 DSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDS 461
           D P+  E  PV E+EL +K  ITP+DVL L  ITENYLC+PDAN+++I+F RFKIRD++S
Sbjct: 32  DHPADLE--PVNEDELTKKDAITPDDVLRLQKITENYLCAPDANVHDIDFTRFKIRDMES 89

Query: 462 NTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQF 521
             VLFEIAKP      P STP    E+ E Q                 DPN GRFVRYQF
Sbjct: 90  GMVLFEIAKPP-----PPSTPDLECEA-ECQ-----------------DPNAGRFVRYQF 126

Query: 522 TPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEH 581
           TP+FL LK +GAT+ F++G   ++ FRMIE+H+F D + LKTFDF FG+CIPNS NTCEH
Sbjct: 127 TPQFLKLKTVGATVEFTVGAKPVSKFRMIERHFFRDKL-LKTFDFEFGFCIPNSKNTCEH 185

Query: 582 IYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           IY FP+LS+ L  EMI NPF T+SDSFYF+++KL MHNKA+Y+YNG
Sbjct: 186 IYEFPSLSQDLCDEMIANPFETRSDSFYFVDDKLIMHNKADYAYNG 231

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|160774111|gb|AAI55432.1| unc119 protein [Xenopus (Silurana) tropicalis]

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/219 (55%), Positives = 157/219 (71%), Gaps = 26/219 (11%)

Query: 409 ASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEI 468
           A+ +TE++LLRKP+I+PEDVL L  IT +YLC+P+ N+Y+I+F RFKIRD++S TVLFEI
Sbjct: 62  AAGITEDQLLRKPHISPEDVLGLQKITSDYLCTPEENVYKIDFTRFKIRDMESGTVLFEI 121

Query: 469 AKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNL 528
            KP                S    GD+              DPN GRFVRYQFTP FL L
Sbjct: 122 TKPP--------------ASERDHGDKKDA-----------DPNAGRFVRYQFTPAFLRL 156

Query: 529 KNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNL 588
           + +GAT+ F++GD  INNFRMIE+HYF + + LK+FDF FG+CIP+S NTCEHIY FP L
Sbjct: 157 RQVGATVEFTVGDKPINNFRMIERHYFREQL-LKSFDFEFGFCIPSSKNTCEHIYEFPQL 215

Query: 589 SKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           S+ L +EMI +P+ T+SDSFYF++NKL MHNKA+YSY+G
Sbjct: 216 SEDLIREMILHPYETQSDSFYFVDNKLVMHNKADYSYSG 254

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348518854|ref|XP_003446946.1| PREDICTED: protein unc-119 homolog A-like [Oreochromis niloticus]

 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 163/248 (65%), Gaps = 31/248 (12%)

Query: 384 SRMNAVSNG---QNENMTCLDDSPSSKEASPVT-EEELLRKPYITPEDVLCLNHITENYL 439
           S  ++ SNG   Q   M       S+    PVT EE+LL    ITPEDVL L  ITENYL
Sbjct: 34  SGTDSTSNGSPKQTAAMKVKKGCNSTDVGVPVTTEEQLLASTVITPEDVLGLQKITENYL 93

Query: 440 CSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTS 499
           CSP+ NIY I+F RFKIRD+++ TVLFEI KP +T                   D+ S  
Sbjct: 94  CSPEENIYNIDFTRFKIRDMETGTVLFEITKPPST-------------------DKASEK 134

Query: 500 HDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTV 559
            D        DPN GRFVRYQFTP FL L+ +GAT+ F++GD  I NFRMIE+HYF + +
Sbjct: 135 RDI-------DPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDRPIENFRMIERHYFREKL 187

Query: 560 HLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHN 619
            LK+FDF FG+C+P+S NTCEHIY FP LS+ + +EMI +P+ T+SDSFYF++NKL MHN
Sbjct: 188 -LKSFDFEFGFCMPSSKNTCEHIYEFPPLSEDIIREMILHPYETQSDSFYFVDNKLVMHN 246

Query: 620 KAEYSYNG 627
           KA+YSYNG
Sbjct: 247 KADYSYNG 254

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242010877|ref|XP_002426184.1| retinal protein, putative [Pediculus humanus corporis] gi|212510235|gb|EEB13446.1| retinal protein, putative [Pediculus humanus corporis]

 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 168/246 (68%), Gaps = 24/246 (9%)

Query: 386 MNAVSNGQ--NENMTCLDDSPSSKEA--SPVTEEELLRKPYITPEDVLCLNHITENYLCS 441
           M+ VSN     +N   +  + S KE    PVTEE L  K Y+TPEDVL L+ IT+ YLC+
Sbjct: 1   MSVVSNNAPIKKNNVGIRSTKSKKETMFEPVTEEYLQNKEYVTPEDVLRLSKITDCYLCT 60

Query: 442 PDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHD 501
           P+ANIY+I+F RFKIRD+ +  VLFEIAKP  ++S          ++ E +GD       
Sbjct: 61  PEANIYQIDFTRFKIRDLGTGIVLFEIAKPTISSS----------DTDEHEGDSEIEE-- 108

Query: 502 TQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHL 561
                   DPN GRFVRYQFTP FL LK +GAT+ F++G   I+NFRMIE+H+F + + L
Sbjct: 109 -------SDPNAGRFVRYQFTPHFLKLKTVGATVEFTVGAQPIHNFRMIERHFFRNKL-L 160

Query: 562 KTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKA 621
           KTFDF+FG+CIPNS NTCEHIY FP L   L +EMI +PF TKSDSFYF+++KL MHNKA
Sbjct: 161 KTFDFDFGFCIPNSKNTCEHIYEFPVLDPELVKEMISHPFETKSDSFYFVDDKLVMHNKA 220

Query: 622 EYSYNG 627
           +Y+Y+G
Sbjct: 221 DYAYDG 226

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117748|ref|XP_001658918.1| retinal protein [Aedes aegypti] gi|108884585|gb|EAT48810.1| AAEL000174-PA [Aedes aegypti]

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/255 (50%), Positives = 168/255 (65%), Gaps = 18/255 (7%)

Query: 382 VTSRMNAVSNGQNENMTCLDDSPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCS 441
           V  +++A++   +      D   SS   +P T         ITPE VL LN IT++YLCS
Sbjct: 4   VGKKLSAITTAPSAGAASGD---SSGSGAPPTSSNPPHPKGITPEYVLKLNKITDDYLCS 60

Query: 442 PDANIYEIEFLRFKIRDIDSNTVLFEIAKPA---------NTASTPSSTPGNNAESPESQ 492
           PDANIY+I+F RFKIRD++S  VLFEIAKP+         N +ST  +  G NA S  + 
Sbjct: 61  PDANIYDIDFTRFKIRDMESGAVLFEIAKPSASETGHSSENNSSTAPAVEGGNATS-SAI 119

Query: 493 GDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEK 552
           G+ +  + + +A     +PN GR+VRYQFTP+FL LK +GAT+ F++G   + NFRMIE+
Sbjct: 120 GNEDHANEEEEA----LEPNAGRYVRYQFTPQFLKLKTVGATVEFTVGSKCVKNFRMIER 175

Query: 553 HYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFIN 612
           H+F D + LKTFDF FGYCIP S NTCEHIY FP +   L  EMI NPF T+SDSFYF++
Sbjct: 176 HFFQDQL-LKTFDFEFGYCIPYSKNTCEHIYEFPTIPPDLVNEMIMNPFETRSDSFYFVD 234

Query: 613 NKLFMHNKAEYSYNG 627
           N L MHNKA+Y+YNG
Sbjct: 235 NCLVMHNKADYAYNG 249

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224076387|ref|XP_002194799.1| PREDICTED: protein unc-119 homolog A [Taeniopygia guttata]

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 150/215 (69%), Gaps = 26/215 (12%)

Query: 413 TEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPA 472
           TEEEL RK  I P+DVL L  +T +YLC+P+ N+Y+I+F RFKIRD++S TVLFEI KPA
Sbjct: 101 TEEELGRKALIGPDDVLGLQRVTSDYLCTPEENVYKIDFTRFKIRDMESGTVLFEITKPA 160

Query: 473 NTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIG 532
                          S     DR              DPN GRFVRYQFTP FL L+ +G
Sbjct: 161 --------------ASEREHNDRKEV-----------DPNAGRFVRYQFTPAFLRLRQVG 195

Query: 533 ATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSL 592
           AT+ F++GD  INNFRMIE+HYF D + LK+FDF FG+CIP+S NTCEHIY FP LS+ L
Sbjct: 196 ATVEFTVGDKPINNFRMIERHYFRDQL-LKSFDFEFGFCIPSSKNTCEHIYEFPQLSEDL 254

Query: 593 TQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
            +EMI +P+ T+SDSFYF++NKL MHNKA+YSY+G
Sbjct: 255 IREMILHPYETQSDSFYFVDNKLVMHNKADYSYSG 289

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
ZFIN|ZDB-GENE-050201-2	264	unc119b "unc-119 homolog b (C.	0.186	0.443	0.669	1.6e-63
UNIPROTKB|F1NSM3	207	UNC119 "Uncharacterized protei	0.186	0.565	0.686	4.2e-63
UNIPROTKB|E1BIZ3	254	UNC119B "Uncharacterized prote	0.186	0.460	0.627	4.3e-63
UNIPROTKB|E2RPI0	250	UNC119B "Uncharacterized prote	0.186	0.468	0.627	5.4e-63
UNIPROTKB|A6NIH7	251	UNC119B "Protein unc-119 homol	0.186	0.466	0.627	8.8e-63
UNIPROTKB|F1RJH3	252	UNC119B "Uncharacterized prote	0.186	0.464	0.627	1.8e-62
MGI|MGI:2147162	251	Unc119b "unc-119 homolog B (C.	0.200	0.501	0.590	7.8e-62
UNIPROTKB|F1N841	244	UNC119B "Uncharacterized prote	0.186	0.479	0.627	6.9e-61
UNIPROTKB|O19177	240	UNC119 "Protein unc-119 homolo	0.186	0.487	0.644	8.8e-61
UNIPROTKB|Q66JA9	242	unc119b-a "Protein unc-119 hom	0.207	0.537	0.572	1.1e-60

ZFIN|ZDB-GENE-050201-2 unc119b "unc-119 homolog b (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 452 (164.2 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 79/118 (66%), Positives = 99/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             DPN GRFVRYQFTP FL L+ +GAT+ F++GD  INNFRMIE+HYF + + LK+FDF FG
Sbjct:   146 DPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDIPINNFRMIERHYFREQL-LKSFDFEFG 204

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ L +EMI +P+ T+SDSFYF++NKL MHNKA+YSY+G
Sbjct:   205 FCIPSSKNTCEHIYEFPPLSEDLIREMILHPYETQSDSFYFVDNKLVMHNKADYSYSG 262

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007601 "visual perception" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

UNIPROTKB|F1NSM3 UNC119 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 459 (166.6 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 81/118 (68%), Positives = 99/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             DPN GRFVRYQFTP FL L+ +GAT+ F++GD  INNFRMIE+HYF D + LK+FDF FG
Sbjct:    89 DPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPINNFRMIERHYFRDQL-LKSFDFEFG 147

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ L QEMI +P+ T+SDSFYF++NKL MHNKA+YSY+G
Sbjct:   148 FCIPSSKNTCEHIYEFPQLSEDLIQEMILHPYETQSDSFYFVDNKLVMHNKADYSYSG 205

GO:0005813 "centrosome" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

UNIPROTKB|E1BIZ3 UNC119B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 435 (158.2 bits), Expect = 4.3e-63, Sum P(3) = 4.3e-63
 Identities = 74/118 (62%), Positives = 98/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             D + GRFVRYQFTP FL L+ +GAT+ F++GD  ++NFRMIE+HYF + + LK FDF+FG
Sbjct:   136 DVSAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHYFRERL-LKNFDFDFG 194

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct:   195 FCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLIMHNKADYAYNG 252

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0035869 "ciliary transition zone" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

UNIPROTKB|E2RPI0 UNC119B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 434 (157.8 bits), Expect = 5.4e-63, Sum P(3) = 5.4e-63
 Identities = 74/118 (62%), Positives = 98/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             D + GRFVRYQFTP FL L+ +GAT+ F++GD  ++NFRMIE+HYF + + LK FDF+FG
Sbjct:   132 DISAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHYFRERL-LKNFDFDFG 190

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct:   191 FCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLIMHNKADYAYNG 248

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0035869 "ciliary transition zone" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

UNIPROTKB|A6NIH7 UNC119B "Protein unc-119 homolog B" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
 Identities = 74/118 (62%), Positives = 98/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             D + GRFVRYQFTP FL L+ +GAT+ F++GD  ++NFRMIE+HYF + + LK FDF+FG
Sbjct:   133 DISAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHYFREHL-LKNFDFDFG 191

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct:   192 FCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLIMHNKADYAYNG 249

GO:0008289 "lipid binding" evidence=IDA

GO:0042953 "lipoprotein transport" evidence=IDA

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0035869 "ciliary transition zone" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RJH3 UNC119B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 435 (158.2 bits), Expect = 1.8e-62, Sum P(3) = 1.8e-62
 Identities = 74/118 (62%), Positives = 98/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             D + GRFVRYQFTP FL L+ +GAT+ F++GD  ++NFRMIE+HYF + + LK FDF+FG
Sbjct:   134 DVSAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHYFRERL-LKNFDFDFG 192

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct:   193 FCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLIMHNKADYAYNG 250

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0035869 "ciliary transition zone" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

MGI|MGI:2147162 Unc119b "unc-119 homolog B (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 439 (159.6 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query:   501 DTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVH 560
             D +  ++  D + GRFVRYQFTP FL L+ +GAT+ F++GD  +  FRMIE+HYF + + 
Sbjct:   124 DAEEESVDVDISVGRFVRYQFTPAFLRLRTVGATVEFTVGDRPVTGFRMIERHYFRERL- 182

Query:   561 LKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNK 620
             LKTFDF+FG+CIP+S NTCEHIY FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNK
Sbjct:   183 LKTFDFDFGFCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLVMHNK 242

Query:   621 AEYSYNG 627
             A+Y+YNG
Sbjct:   243 ADYAYNG 249

GO:0005929 "cilium" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008289 "lipid binding" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0035869 "ciliary transition zone" evidence=ISO

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=ISO

UNIPROTKB|F1N841 UNC119B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 438 (159.2 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 74/118 (62%), Positives = 98/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             D + GRFVRYQFTP FL L+ +GAT+ F++G+  ++NFRMIE+HYF D + LK FDF+FG
Sbjct:   126 DSSAGRFVRYQFTPAFLRLRTVGATVEFTVGEKPVSNFRMIERHYFRDRL-LKNFDFDFG 184

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ L + M++NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct:   185 FCIPSSRNTCEHIYEFPQLSEDLIRLMVENPYETRSDSFYFVDNKLIMHNKADYAYNG 242

GO:0008289 "lipid binding" evidence=IEA

GO:0035869 "ciliary transition zone" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

UNIPROTKB|O19177 UNC119 "Protein unc-119 homolog A" [Canis lupus familiaris (taxid:9615)]

 Score = 440 (159.9 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 76/118 (64%), Positives = 99/118 (83%)

Query:   510 DPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFG 569
             DPN GRFVRYQFTP FL L+ +GAT+ F++GD  +NNFRMIE+HYF + + LK+FDF+FG
Sbjct:   122 DPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFG 180

Query:   570 YCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
             +CIP+S NTCEHIY FP LS+ L  EMI +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct:   181 FCIPSSKNTCEHIYDFPPLSEELINEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238

GO:0005813 "centrosome" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0042953 "lipoprotein transport" evidence=ISS

GO:0050896 "response to stimulus" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q66JA9 unc119b-a "Protein unc-119 homolog B-A" [Xenopus laevis (taxid:8355)]

 Score = 442 (160.7 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 75/131 (57%), Positives = 102/131 (77%)

Query:   497 STSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFN 556
             S   + +  +   D + GRFVRYQFTP FL L+ +GAT+ F++GD  + +FRMIE+HYF 
Sbjct:   111 SEQEEEEEESTHLDASAGRFVRYQFTPAFLRLRKVGATVEFTVGDKPVKSFRMIERHYFR 170

Query:   557 DTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLF 616
             D + LK+FDF+FG+CIPNS NTCEH+Y FP LS+ L ++M +NP+ T+SDSFYF++NKL 
Sbjct:   171 DHI-LKSFDFDFGFCIPNSRNTCEHMYEFPQLSEELIRQMTENPYETRSDSFYFVDNKLI 229

Query:   617 MHNKAEYSYNG 627
             MHNKA+Y+YNG
Sbjct:   230 MHNKADYAYNG 240

GO:0008289 "lipid binding" evidence=ISS

GO:0035869 "ciliary transition zone" evidence=ISS

GO:0042953 "lipoprotein transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SYR2	U119A_BOVIN	No assigned EC number	0.5497	0.2945	0.7708	yes	N/A
Q9XYQ2	UN119_DROME	No assigned EC number	0.5533	0.3073	0.7283	yes	N/A
Q10658	UN119_CAEEL	No assigned EC number	0.5044	0.3105	0.8904	yes	N/A
Q13432	U119A_HUMAN	No assigned EC number	0.5497	0.2945	0.7708	yes	N/A
O19177	U119A_CANFA	No assigned EC number	0.5497	0.2945	0.7708	yes	N/A
Q8C4B4	U119B_MOUSE	No assigned EC number	0.5111	0.3216	0.8047	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	628
pfam05351	156	pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit	1e-67

>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit

 Score =  217 bits (554), Expect = 1e-67
 Identities = 94/186 (50%), Positives = 116/186 (62%), Gaps = 30/186 (16%)

Query: 441 SPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSH 500
            P+AN+Y I+F RFKIRD ++  VLFEIAK  +    P                      
Sbjct: 1   RPEANLYGIKFTRFKIRDAETGKVLFEIAKDPSDEDLPEE-------------------- 40

Query: 501 DTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVH 560
                    DPN GR VRYQF PKFL LK +GAT+ F++GD  + NFRMIE+HYF   + 
Sbjct: 41  ---------DPNAGREVRYQFPPKFLKLKTVGATVEFTVGDKPVKNFRMIERHYFKGQL- 90

Query: 561 LKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNK 620
           LK+FDF FG+CIPNS NT EHIY FP LS+ L  EM+  P+ T+SDSFYF++NKL MHNK
Sbjct: 91  LKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMLSGPYETRSDSFYFVDNKLVMHNK 150

Query: 621 AEYSYN 626
           A Y Y+
Sbjct: 151 ARYFYS 156

GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	628
KOG4037|consensus	240		100.0
PF05351	157	GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: I	100.0
KOG4038|consensus	150		99.88

>KOG4037|consensus

Probab=100.00  E-value=2.7e-89  Score=646.92  Aligned_cols=199  Identities=62%  Similarity=1.081  Sum_probs=181.6

Q ss_pred             CCCCCCCCCCCHHH-hhcCCCCChhhhhccccCCCccccCCCCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCC--CCCC
Q psy1216         403 SPSSKEASPVTEEE-LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTA--STPS  479 (628)
Q Consensus       403 ~~~~~~~~~~TEee-Ll~k~~ITPEdVL~LtkpTe~YLC~PsANIYnIdFtRFKIRDlESG~VLFEIaKPp~se--~~p~  479 (628)
                      +++..++.+-++.+ |.++..|||+|||+|++||++|||+|+||+|+|||+||||||||||+|||||+|||.+.  .++ 
T Consensus        39 ~~~~~~ag~~~~a~~la~~~~itP~dVL~L~~IT~dyLCSp~aNvy~IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~-  117 (240)
T KOG4037|consen   39 SESEPDAGPGPRAGPLARKQPITPEDVLGLQRITGDYLCSPEANVYKIDFTRFKIRDLDSGTVLFEIAKPPVETEERLP-  117 (240)
T ss_pred             CCCCCCCCCCCCCCcccccCCCChHHhhccccccCCceeCcccceEEeeeEEEEEeeccCCcEEEEecCCCCcchhhcc-
Confidence            44444455555555 45567999999999999999999999999999999999999999999999999998762  221 


Q ss_pred             CCCCCCCCCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEEeCccccccccceeEEEEeecccccccceeEEEeeeCCcc
Q psy1216         480 STPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTV  559 (628)
Q Consensus       480 ~e~~~~a~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQFppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL  559 (628)
                                              .+.++.+|||||+|||||+|.||+||+|||+|+|+||++||+||||||||||||+|
T Consensus       118 ------------------------a~ae~lspnagRyVRYqFtPaFL~LktVGATVEFtVGd~PvnnFRMIERHfFrdrL  173 (240)
T KOG4037|consen  118 ------------------------ANAEDLSPNAGRYVRYQFTPAFLRLKTVGATVEFTVGDKPVNNFRMIERHFFRDRL  173 (240)
T ss_pred             ------------------------hhhhccCCcccceEEEeechhHeeeeecccEEEEEeCCeecchhhHHHHHHHHHHH
Confidence                                    12345679999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeeeecCCcccceEEEecCCCCHHHHHHHHhCCCcccccceEEeCCeEeeeccccccccC
Q psy1216         560 HLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG  627 (628)
Q Consensus       560 ~LKsfDFeFGFCIPnStNTWEhIYE~PqLsedLieEMI~~PyETkSDSFYFVDNKLVMHNKADYaYnG  627 (628)
                       ||+|||+||||||+|+||||||||||+|+++|+.|||.|||||+|||||||+|+|||||||||+|+|
T Consensus       174 -LK~FDFeFGFC~P~SkNtcEHIYeFP~Ls~~L~~eMI~~P~ETrSDSFYFV~nrLVMHNKADYsYdg  240 (240)
T KOG4037|consen  174 -LKSFDFEFGFCIPSSKNTCEHIYEFPPLSEELMAEMINNPNETRSDSFYFVENRLVMHNKADYSYDG  240 (240)
T ss_pred             -HhhccceeeEeecCCCCcchhhhcCCCCCHHHHHHHhcCccccCCcceEEEccEEEEecccccccCC
Confidence             9999999999999999999999999999999999999999999999999999999999999999987

>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3

Probab=100.00  E-value=2.3e-74  Score=526.88  Aligned_cols=157  Identities=62%  Similarity=1.095  Sum_probs=138.9

Q ss_pred             CCCCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEE
Q psy1216         441 SPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQ  520 (628)
Q Consensus       441 ~PsANIYnIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQ  520 (628)
                      +|+||+|+|+|++|+|||+|||+||||+++|+++..                            ...+.+++++|+|+||
T Consensus         1 ~~~~n~ygi~f~~f~iRD~dtg~vlfe~~~~~~~~~----------------------------~~~~~~~~~~r~v~y~   52 (157)
T PF05351_consen    1 KPEANIYGIEFTRFKIRDADTGKVLFEINKDPSDVE----------------------------QLEPEDPNAGREVRYR   52 (157)
T ss_dssp             -HHHHCCHEEEEEEEEEETTTTEEEEEEESSTTS------------------------------STT-----TTTEEEEE
T ss_pred             ChhhceeCcEEEEEEEEECCCCcEEEEecCCCCchh----------------------------hcccccCCCceEEEEE
Confidence            478999999999999999999999999999966511                            2345689999999999


Q ss_pred             eCccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcccceEEEecCCCCHHHHHHHHhCC
Q psy1216         521 FTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNP  600 (628)
Q Consensus       521 FppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStNTWEhIYE~PqLsedLieEMI~~P  600 (628)
                      |||+||+||+|||+|+||||++||+||||||||||||+| ||+|||+||||||||+||||||||+|+|+++++++||++|
T Consensus        53 fp~~~L~~k~V~~~i~Fsvg~~pv~nFRmierhyF~~~l-lk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi~gp  131 (157)
T PF05351_consen   53 FPPKFLKLKTVGREIEFSVGDEPVNNFRMIERHYFRDQL-LKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMISGP  131 (157)
T ss_dssp             EEGGGGG-SEEEEEEEEEE-SS-ECCEEEEEEEEETTEE-EEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHHCTT
T ss_pred             cCHHHhcchhheEEEEEEECceeccccEeeEeeeecCce-eeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHHcCC
Confidence            999999999999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CcccccceEEeCCeEeeecccccccc
Q psy1216         601 FHTKSDSFYFINNKLFMHNKAEYSYN  626 (628)
Q Consensus       601 yETkSDSFYFVDNKLVMHNKADYaYn  626 (628)
                      |||+|||||||||+|||||||+|+|+
T Consensus       132 ~et~sdSfyfv~~~Limhnka~y~Y~  157 (157)
T PF05351_consen  132 YETKSDSFYFVDDKLIMHNKARYFYS  157 (157)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcceEEEEEEeCCEEEEEEEEEEecC
Confidence            99999999999999999999999996

1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.

>KOG4038|consensus

Probab=99.88  E-value=9.6e-25  Score=197.95  Aligned_cols=94  Identities=29%  Similarity=0.436  Sum_probs=78.2

Q ss_pred             EeCccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcccceEEEecCCCCHHHHHHHHhC
Q psy1216         520 QFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDN  599 (628)
Q Consensus       520 QFppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStNTWEhIYE~PqLsedLieEMI~~  599 (628)
                      +.|+++|+|++|+|+|+|| +-+.|++|||.||+||+|++ +++|.|+||||||||+||||++||+++=|+=.- .-+.+
T Consensus        48 rvpkkilkcravsreinfs-s~e~mekfrleqkvyfkg~i-~eewffefgfvipnstntwqs~ieaapesqmmp-asvl~  124 (150)
T KOG4038|consen   48 RVPKKILKCRAVSREINFS-SIESMEKFRLEQKVYFKGRI-MEEWFFEFGFVIPNSTNTWQSTIEAAPESQMMP-ASVLN  124 (150)
T ss_pred             cccHHHHhhHhhhhhcccc-hHHHHHhhhhhheeeeccee-HHHhhhhhceeccCCcchHHHHHhhCchhccCC-hhhcc
Confidence            5899999999999999999 88999999999999999999 999999999999999999999999987654222 22344


Q ss_pred             CCcccccceEEeCCeEee
Q psy1216         600 PFHTKSDSFYFINNKLFM  617 (628)
Q Consensus       600 PyETkSDSFYFVDNKLVM  617 (628)
                      -.-|.--||| -++-||-
T Consensus       125 gnv~iet~fy-d~dllvs  141 (150)
T KOG4038|consen  125 GNVTIETSFY-DNDLLVS  141 (150)
T ss_pred             CceEEEEEEe-cCCEEEE
Confidence            4555666888 4444543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	628
4goj_C	240	The Crystal Structure Of Full Length Arl3gppnhp In		1e-62
3rbq_A	195	Co-Crystal Structure Of Human Unc119 (Retina Gene 4		7e-62
3gqq_A	195	Crystal Structure Of The Human Retinal Protein 4 (U		5e-59

>pdb|4GOJ|C Chain C, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 240

Iteration: 1
 Score =  238 bits (606), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)
Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
           L RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +  
Sbjct: 54  LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSER 113
Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
            P                          N    DPN GRFVRYQFTP FL L+ +GAT+ 
Sbjct: 114 LP-------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148
Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
           F++GD  +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEM 207
Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238

>pdb|3RBQ|A Chain A, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And An N-Terminal Transducin-Alpha Mimicking Peptide Length = 195

Iteration: 1
 Score =  235 bits (599), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 145/209 (69%), Gaps = 26/209 (12%)
Query: 419 RKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTP 478
           RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +   P
Sbjct: 11  RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP 70
Query: 479 SSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFS 538
                                     N    DPN GRFVRYQFTP FL L+ +GAT+ F+
Sbjct: 71  -------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFT 105
Query: 539 IGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID 598
           +GD  +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EMI 
Sbjct: 106 VGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR 164
Query: 599 NPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 165 HPYETQSDSFYFVDDRLVMHNKADYSYSG 193

>pdb|3GQQ|A Chain A, Crystal Structure Of The Human Retinal Protein 4 (Unc-119 Homolog A). Northeast Structural Genomics Consortium Target Hr3066a Length = 195

Iteration: 1
 Score =  225 bits (574), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 141/209 (67%), Gaps = 26/209 (12%)
Query: 419 RKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTP 478
           RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD DS TVLFEI KP  +   P
Sbjct: 11  RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDXDSGTVLFEIKKPPVSERLP 70
Query: 479 SSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFS 538
                                     N    DPN GRFVRYQFTP FL L+ +GAT+ F+
Sbjct: 71  -------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFT 105
Query: 539 IGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID 598
           +GD  +NNFR IE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  E I 
Sbjct: 106 VGDKPVNNFRXIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEXIR 164
Query: 599 NPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           +P+ T+SDSFYF++++L  HNKA+YSY+G
Sbjct: 165 HPYETQSDSFYFVDDRLVXHNKADYSYSG 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	628
3gqq_A	195	Protein UNC-119 homolog A; human retinal protein 4	3e-68
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	2e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A* Length = 195

 Score =  219 bits (559), Expect = 3e-68
 Identities = 114/209 (54%), Positives = 145/209 (69%), Gaps = 26/209 (12%)

Query: 419 RKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTP 478
           RK  I PEDVL L  IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP  +   P
Sbjct: 11  RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP 70

Query: 479 SSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFS 538
            +                             DPN GRFVRYQFTP FL L+ +GAT+ F+
Sbjct: 71  INRR-------------------------DLDPNAGRFVRYQFTPAFLRLRQVGATVEFT 105

Query: 539 IGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID 598
           +GD  +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L  EMI 
Sbjct: 106 VGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR 164

Query: 599 NPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
           +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 165 HPYETQSDSFYFVDDRLVMHNKADYSYSG 193

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B* Length = 152

 Score =  135 bits (341), Expect = 2e-37
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 42/177 (23%)

Query: 449 IEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIP 508
            +     +RD ++  +L++  +                                      
Sbjct: 17  FKLNWMNLRDAETGKILWQGTED------------------------------------- 39

Query: 509 KDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNF 568
                G     +   K L  K +   + FS  + ++  FR+ +K YF     L+ + F F
Sbjct: 40  -LSVPGVEHEARVPKKILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQC-LEEWFFEF 96

Query: 569 GYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSY 625
           G+ IPNS NT + +      S+ +   ++        ++ +F ++ L   ++    Y
Sbjct: 97  GFVIPNSTNTWQSLIEAAPESQMMPASVLTGNV--IIETKFFDDDLLVSTSRVRLFY 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 1e-11
 Identities = 86/506 (16%), Positives = 149/506 (29%), Gaps = 144/506 (28%)

Query: 205 FETTHTK-SYKHI-KHGTGDFSEGTNVDPDDVEDVEEIVMENRNVD-----ANFDRRTSR 257
           FET   +  YK I       F +  N D  DV+D+ + ++    +D      +    T R
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVD--NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 258 Y----------SSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRL--QMFNNFC 305
                        Q+FVE   V    Y+     +KT           QP +  +M+    
Sbjct: 67  LFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKT--------EQRQPSMMTRMYIEQR 116

Query: 306 DTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRT--TKVK-------------GKETKYKI 350
           D   L  D Q+     V    +R +   + +R    +++             GK      
Sbjct: 117 D--RLYNDNQVFAKYNV----SRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTW---- 165

Query: 351 NFLSGST--SEKIKSAY-FNLQWYHGISEFSFERVTSRMNAVSNGQNENMTCLDDSPSSK 407
             ++     S K++    F + W +  +  S E V   +  +    + N T   D  S+ 
Sbjct: 166 --VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 408 EASPVTEEELLR-----KPYITPEDVLCLNHITENYLCSPDANIYEIEF-LRFKI----R 457
           +    + +  LR     KPY     +L L ++        +A  +   F L  KI    R
Sbjct: 224 KLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ-------NAKAWN-AFNLSCKILLTTR 273

Query: 458 D------IDSNTVLFEIAKPANTASTPSSTPG--------NNAESPESQGDRNSTSHDTQ 503
                  + + T         +   TP                + P      N       
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 504 ANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHY-----FNDT 558
           A +I     T    ++      +N   +   I  S+   E   +R   K +     F  +
Sbjct: 334 AESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPS 384

Query: 559 VHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKS-------DSFYFI 611
            H           IP  +     + +           ++ N  H  S       +S   I
Sbjct: 385 AH-----------IPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 612 -----------NNKLFMHNKAEYSYN 626
                       N+  +H      YN
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYN 454

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 99/627 (15%), Positives = 180/627 (28%), Gaps = 182/627 (29%)

Query: 79  EKQRPV---SKYKELVNDPD-EQTVYSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEID 134
           +  + +    +   ++   D          +   K + +    V    R ++K+++  I 
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 135 DQIHKSTGSLHKTKLHLSSDRLNRKFNRSTDSLDSE--ARASTSREQPQKGQQVYQLQKD 192
            +  + +     T++++     +R +N      D++  A+ + SR QP       +L++ 
Sbjct: 100 TEQRQPSM---MTRMYIEQ--RDRLYN------DNQVFAKYNVSRLQP-----YLKLRQ- 142

Query: 193 YQPYQTDNQRSLFETTHTKSYKHIK-HGTGDFSEGTNV------DPDDVEDV-------- 237
                     +L E    +  K++   G      G             V+          
Sbjct: 143 ----------ALLEL---RPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 238 -------EEIVMEN-----RNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMN 285
                   E V+E        +D N+  R+   S+ +     R+     E R++      
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPY 243

Query: 286 TTSLFQRLV-----QPR-LQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTT 339
              L   LV       +    FN  C  ++  R  Q V D       T    D  ++  T
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLT 299

Query: 340 KVKGKE--TKY-------------KIN-FLSGSTSEKIKS--AYFNLQWYHGISEFSFER 381
             + K    KY               N       +E I+   A ++  W H     + ++
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKH----VNCDK 354

Query: 382 VTSRMNAVSNGQNENMTCLDDSPSSKEASPVTEEELLRKPY----ITPEDVLCLNHITEN 437
           +T+ + +           L+          V E    RK +    + P       HI   
Sbjct: 355 LTTIIES----------SLN----------VLEPAEYRKMFDRLSVFPPSA----HIPTI 390

Query: 438 YLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNS 497
            L            + F +   D   V+ ++ K         S         E Q   ++
Sbjct: 391 LLSL----------IWFDVIKSDVMVVVNKLHK--------YS-------LVEKQPKEST 425

Query: 498 TS-HDTQANNIPKDPNTG----RFV-RYQFTPKF----LNLKNIGATITFSIGDFEINNF 547
            S          K  N        V  Y     F    L    +       IG   + N 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNI 484

Query: 548 RMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID----NPFHT 603
              E+      V L   DF F   +   I    H     N S S+   +       P+  
Sbjct: 485 EHPERMTLFRMVFL---DFRF---LEQKI---RHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 604 KSDSFY--FINNKL-FMHNKAEYSYNG 627
            +D  Y   +N  L F+    E     
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICS 562

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	628
3gqq_A	195	Protein UNC-119 homolog A; human retinal protein 4	100.0
4goj_C	240	Protein UNC-119 homolog A; small G protein ARL, GD	100.0
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	100.0

>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*

Probab=100.00  E-value=8.9e-93  Score=664.13  Aligned_cols=185  Identities=62%  Similarity=1.116  Sum_probs=166.2

Q ss_pred             hcCCCCChhhhhccccCCCccccCCCCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q psy1216         418 LRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNS  497 (628)
Q Consensus       418 l~k~~ITPEdVL~LtkpTe~YLC~PsANIYnIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a~spe~~~~r~~  497 (628)
                      -+++.||||+||+|++||++|||+|+||+|+|+|++|+|||||||+|||||+||++++..                    
T Consensus        10 ~~~~~itPe~Vl~l~~~t~~~LC~~~aN~y~I~F~~F~IRD~etg~vLFei~k~~~~~~~--------------------   69 (195)
T 3gqq_A           10 HRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERL--------------------   69 (195)
T ss_dssp             --CCCCCGGGTTTCCSCCSSCSSCGGGCTTCCEEEEEEEEETTTCCEEEEEECCC-------------------------
T ss_pred             cccCcCCHHHHhcccccCcceecCccccEeeeEEEEEEEeccCCCCEEEEecCCCCcccc--------------------
Confidence            368999999999999999999999999999999999999999999999999999765432                    


Q ss_pred             CCCCccCCCCCCCCCCCceEEEEeCccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcc
Q psy1216         498 TSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSIN  577 (628)
Q Consensus       498 ~s~d~d~~l~~~DpnagRfVRYQFppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStN  577 (628)
                           .+++++.++++||+|||||||+||+||+|||+|+||||++||+||||||||||+|+| ||+|||+||||||||+|
T Consensus        70 -----~~~~~~~~~~~~R~vrYqF~~~~L~~k~V~~~i~Fsvgdkpi~nFRmierhyF~~~l-lk~~dF~FGFcIP~StN  143 (195)
T 3gqq_A           70 -----PINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKN  143 (195)
T ss_dssp             --------------CTTCEEEEECCGGGGGCSEEEEEEEEECCSSCBCSEEEEEEEEETTEE-EEEEEEECCCBCTTSEE
T ss_pred             -----ccccccCCccccceEEEEeCHHHhcchhhceEEEEeeCCccccccEEEEEEEeCCce-eeEEeeeeeeEcCCCCc
Confidence                 013567789999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             cceEEEecCCCCHHHHHHHHhCCCcccccceEEeCCeEeeeccccccccCC
Q psy1216         578 TCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV  628 (628)
Q Consensus       578 TWEhIYE~PqLsedLieEMI~~PyETkSDSFYFVDNKLVMHNKADYaYnG~  628 (628)
                      |||||||+|+|++++++|||+|||||+|||||||||||||||||+|+|+|.
T Consensus       144 TWE~iye~P~l~~~~i~emi~~P~et~SDSFYFVd~kLvMHNKA~Y~Y~gg  194 (195)
T 3gqq_A          144 TCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT  194 (195)
T ss_dssp             EEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEEEECC--
T ss_pred             cceeeeecCCCCHHHHHHHHhCCCccccceeEEECCEEEEccceeccccCC
Confidence            999999999999999999999999999999999999999999999999984

>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*

Probab=100.00  E-value=9e-92  Score=672.18  Aligned_cols=196  Identities=59%  Similarity=1.068  Sum_probs=160.8

Q ss_pred             CCCCCCCHHHhhcCCCCChhhhhccccCCCccccCCCCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCC
Q psy1216         407 KEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNA  486 (628)
Q Consensus       407 ~~~~~~TEeeLl~k~~ITPEdVL~LtkpTe~YLC~PsANIYnIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a  486 (628)
                      .+++..++++|+++..|||||||+|++||++|||+|+||+|+|+|++|+|||||||+|||||+||++++..+        
T Consensus        44 ~~~~~~~~~~l~~~~~itPe~Vl~l~~~T~~yLC~~~aN~y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~--------  115 (240)
T 4goj_C           44 DAGPGPRPGPLQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP--------  115 (240)
T ss_dssp             ---------------CCCGGGTTTCCSCCSSCSSCGGGCTTCCEEEEEEEEETTTCCEEEEEEC----------------
T ss_pred             cccCCCChhHHhccCCcCHHHHhcCcccccccccCccccccCcceeEEEEecCCCCeEEEEecCCCcccccc--------
Confidence            345567999999999999999999999999999999999999999999999999999999999997654321        


Q ss_pred             CCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEEeCccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeee
Q psy1216         487 ESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDF  566 (628)
Q Consensus       487 ~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQFppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDF  566 (628)
                                       .+..+.|+++||+|||||||+||+||+|||+|+||||++||+||||||||||||+| ||+|||
T Consensus       116 -----------------~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiERhyFrd~l-LksfDF  177 (240)
T 4goj_C          116 -----------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQL-LKSFDF  177 (240)
T ss_dssp             ---------------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEEEEEETTEE-EEEEEE
T ss_pred             -----------------ccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeeehhhhcccc-hheecc
Confidence                             13456789999999999999999999999999999999999999999999999999 999999


Q ss_pred             eeeeeecCCcccceEEEecCCCCHHHHHHHHhCCCcccccceEEeCCeEeeeccccccccCC
Q psy1216         567 NFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV  628 (628)
Q Consensus       567 eFGFCIPnStNTWEhIYE~PqLsedLieEMI~~PyETkSDSFYFVDNKLVMHNKADYaYnG~  628 (628)
                      +||||||||+||||||||+|+|+++++++||+|||||+|||||||||+|||||||||+|+|.
T Consensus       178 eFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~~p~Et~sdSFYFvddkLvMHNKAdY~Y~g~  239 (240)
T 4goj_C          178 HFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT  239 (240)
T ss_dssp             EEEEECTTCEEEEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             ccceeccCCcccceeEEecCCcchhhHHHHHhCCCceeeeeeEEECCEEEEcchhhcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999984

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*

Probab=100.00  E-value=2.6e-43  Score=320.98  Aligned_cols=133  Identities=20%  Similarity=0.387  Sum_probs=119.5

Q ss_pred             eeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEEeCccccc
Q psy1216         448 EIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLN  527 (628)
Q Consensus       448 nIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQFppkFLk  527 (628)
                      ++.+.+|+|||+|||+||||+++|++..     +                            .+.     .++|||+||+
T Consensus        16 Gfk~~~m~iRD~dtG~vLwe~~kd~s~~-----~----------------------------~e~-----~aRfp~~~L~   57 (152)
T 3t5g_B           16 GFKLNWMNLRDAETGKILWQGTEDLSVP-----G----------------------------VEH-----EARVPKKILK   57 (152)
T ss_dssp             HEEEEEEEEEETTTCCEEEEECSCTTCT-----T----------------------------SEE-----EEEECGGGGG
T ss_pred             CceEEEEEEEEcCCCcEEEEecCCCCCc-----c----------------------------ccc-----ceecCHHHhc
Confidence            5789999999999999999999985321     0                            112     3349999999


Q ss_pred             cccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcccceEEEecCCCCHHHHHHHHhCCCcccccc
Q psy1216         528 LKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDS  607 (628)
Q Consensus       528 lKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStNTWEhIYE~PqLsedLieEMI~~PyETkSDS  607 (628)
                      |++|||+|+||+ ++||+||||||||||+|+| ||+|||+||||||||+||||||||+|++++-+-.+.+++++-... +
T Consensus        58 ~~~V~~~i~Fs~-~epi~nFRmierhyf~~~l-le~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~~lsGnv~IeT-~  134 (152)
T 3t5g_B           58 CKAVSRELNFSS-TEQMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIET-K  134 (152)
T ss_dssp             CSEEEEEEEEEE-SSCEEEEEEEEEEEETTEE-EEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHHHHTTTEEEEE-E
T ss_pred             chhheEEEEEec-cccccccEEEEEEEEcCce-eeeEeeeeeeEcCCCCcccceEEEcCCccccCCHhHcCCcEEEEE-E
Confidence            999999999995 9999999999999999999 999999999999999999999999999999999999999998777 8


Q ss_pred             eEEeCCeEeeecccc
Q psy1216         608 FYFINNKLFMHNKAE  622 (628)
Q Consensus       608 FYFVDNKLVMHNKAD  622 (628)
                      || .+|.||--+++-
T Consensus       135 f~-d~d~li~~s~vR  148 (152)
T 3t5g_B          135 FF-DDDLLVSTSRVR  148 (152)
T ss_dssp             EE-ETTEEEEEEEEE
T ss_pred             Ee-cCCEEEEEeEEE
Confidence            88 999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	628
d1kshb_	149	b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens)	1e-44

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (389), Expect = 1e-44
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 42/184 (22%)

Query: 442 PDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHD 501
               +   +     +RD ++  +L++  +  +                            
Sbjct: 7   AREILRGFKLNWMNLRDAETGKILWQGTEDLSVP-------------------------- 40

Query: 502 TQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHL 561
                       G     +   K L  K +   + FS  + ++  FR+ +K YF     L
Sbjct: 41  ------------GVEHEARVPKKILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQC-L 86

Query: 562 KTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKA 621
           + + F FG+ IPNS NT + +      S+ +   ++        ++ +F ++ L   ++ 
Sbjct: 87  EEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGN--VIIETKFFDDDLLVSTSRV 144

Query: 622 EYSY 625
              Y
Sbjct: 145 RLFY 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	628
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-60  Score=425.38  Aligned_cols=142  Identities=20%  Similarity=0.364  Sum_probs=125.0

Q ss_pred             CCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEEeC
Q psy1216         443 DANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFT  522 (628)
Q Consensus       443 sANIYnIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQFp  522 (628)
                      ..+.|+|+|++|+|||+|||+||||++++++..                                      ++.+.|+||
T Consensus         8 ~~i~~Gf~~~~~~iRD~etG~Vlfe~~~d~~~~--------------------------------------~~e~~~~~p   49 (149)
T d1kshb_           8 REILRGFKLNWMNLRDAETGKILWQGTEDLSVP--------------------------------------GVEHEARVP   49 (149)
T ss_dssp             HHHHHTEEEEEEEEEETTTTEEEEEECSCTTCT--------------------------------------TCCCEEEEC
T ss_pred             HHHhcCceEEEEEEEeCCCCeEEEEecCCCCCC--------------------------------------CceeeccCC
Confidence            357799999999999999999999999864321                                      124678999


Q ss_pred             ccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcccceEEEecCCCCHHHHHHHHhCCCc
Q psy1216         523 PKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFH  602 (628)
Q Consensus       523 pkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStNTWEhIYE~PqLsedLieEMI~~PyE  602 (628)
                      |+||+||+|||+|+|||| +||+||||||||||||+| ||+|||+||||||||+||||||||+|+++++++.+||++  +
T Consensus        50 ~~~L~~k~V~~~i~Fs~~-e~i~~Frmierhyfr~~l-le~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~g--~  125 (149)
T d1kshb_          50 KKILKCKAVSRELNFSST-EQMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTG--N  125 (149)
T ss_dssp             GGGGGCSCEEEEEEEEES-SCEEEEEEEEEEEETTEE-EEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTTT--S
T ss_pred             HHHhccceeceEEEEecC-cccccceEEEEEeecCce-eeEEEeeeeeEecCCCcchhheeecCCccccchHHHhcC--C
Confidence            999999999999999976 599999999999999999 999999999999999999999999999999999999998  8


Q ss_pred             ccccceEEeCCeEeeecccccccc
Q psy1216         603 TKSDSFYFINNKLFMHNKAEYSYN  626 (628)
Q Consensus       603 TkSDSFYFVDNKLVMHNKADYaYn  626 (628)
                      |+|||||||||+|||||||+|+|-
T Consensus       126 ~~~dt~yf~~d~Li~~nka~y~Yv  149 (149)
T d1kshb_         126 VIIETKFFDDDLLVSTSRVRLFYV  149 (149)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEEEEECCEEEEeeeEEEEeC
Confidence            999999999999999999999993