Psyllid ID: psy12172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEcccHEEEEcc
Coil and Loop (DISEMBL)
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCtknlrtpsniLVVNLAFSDfcmmfsmapTMVLNCFYETWTLGKFCLRFLVR
Flexible Loop (DISEMBL)
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Low Complexity Region (SEG)
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Disordered region (IsUnstruct)
***LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLV*
Disordered Region (DISOPRED)
*HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Disordered Region (DISEMBL)
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Disordered Region (DISPRO)
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
P35362	376	Rhodopsin OS=Sphodromanti	N/A	N/A	0.916	0.204	0.675	7e-25
Q95YI3	381	Ceropsin OS=Bombyx mori G	N/A	N/A	0.928	0.204	0.628	2e-23
O02464	377	Opsin-1 OS=Manduca sexta	N/A	N/A	0.928	0.206	0.615	5e-23
Q94741	381	Opsin-1 OS=Schistocerca g	N/A	N/A	0.916	0.202	0.623	7e-23
Q17296	378	Rhodopsin OS=Cataglyphis	N/A	N/A	0.892	0.198	0.626	8e-23
P35361	376	Ocellar opsin OS=Limulus	N/A	N/A	0.916	0.204	0.636	1e-22
P35360	376	Lateral eye opsin OS=Limu	N/A	N/A	0.916	0.204	0.636	1e-22
Q17292	378	Rhodopsin OS=Camponotus a	N/A	N/A	0.928	0.206	0.620	2e-22
Q17053	377	Rhodopsin, long-wavelengt	yes	N/A	0.928	0.206	0.594	7e-21
O01668	369	Opsin Rh6 OS=Drosophila m	yes	N/A	0.916	0.208	0.584	6e-20

>sp|P35362|OPSD_SPHSP Rhodopsin OS=Sphodromantis sp. PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG  + CLG +S+VGNG+V+YIF  TK LRTPSN+LVVNLAFSDF MM SM+
Sbjct: 47  MNPLWHGLLGFVIGCLGFVSVVGNGMVIYIFSTTKGLRTPSNLLVVNLAFSDFLMMLSMS 106

Query: 61  PTMVLNCFYETWTLGKF 77
           P MV+NC+YETW LG F
Sbjct: 107 PPMVINCYYETWVLGPF 123

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.
Sphodromantis sp. (taxid: 27433)

>sp|Q95YI3|OPSCE_BOMMO Ceropsin OS=Bombyx mori GN=Bcop PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 63/78 (80%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG T+  LG +SM+GNG+V+YIF+ TKNL+TPSN+LVVNLAFSDF MM +M+
Sbjct: 53  MNPLWHALLGFTIGVLGFISMMGNGMVIYIFMTTKNLKTPSNLLVVNLAFSDFLMMCAMS 112

Query: 61  PTMVLNCFYETWTLGKFC 78
           P MV+NC+ ETW  G F 
Sbjct: 113 PAMVINCYNETWVFGPFA 130

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Bombyx mori (taxid: 7091)

>sp|O02464|OPS1_MANSE Opsin-1 OS=Manduca sexta GN=OP1 PE=1 SV=2

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 63/78 (80%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG T+  LG +S+ GNG+V+YIF+ TK+L+TPSN+LVVNLAFSDF MM +M+
Sbjct: 49  MNPLWHALLGFTIGVLGFVSISGNGMVIYIFMSTKSLKTPSNLLVVNLAFSDFLMMCAMS 108

Query: 61  PTMVLNCFYETWTLGKFC 78
           P MV+NC+YETW  G F 
Sbjct: 109 PAMVVNCYYETWVWGPFA 126

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Manduca sexta (taxid: 7130)

>sp|Q94741|OPS1_SCHGR Opsin-1 OS=Schistocerca gregaria GN=Lo1 PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 62/77 (80%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG  +  LG +S++GNG+V+YIF  TK+LRTPSN+LVVNLAFSDF MMF+M+
Sbjct: 49  MNPLWHGLLGFVIGVLGVISVIGNGMVIYIFSTTKSLRTPSNLLVVNLAFSDFLMMFTMS 108

Query: 61  PTMVLNCFYETWTLGKF 77
             M +NC+YETW LG F
Sbjct: 109 APMGINCYYETWVLGPF 125

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Schistocerca gregaria (taxid: 7010)

>sp|Q17296|OPSD_CATBO Rhodopsin OS=Cataglyphis bombycina PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 61/75 (81%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG  +  LG +S++GNG+V+YIF  TK+LRTPSN+LV+NLA SDF MM SM+
Sbjct: 49  MNPLWHAILGFVIGILGMISVIGNGMVIYIFTTTKSLRTPSNLLVINLAISDFLMMLSMS 108

Query: 61  PTMVLNCFYETWTLG 75
           P MV+NC+YETW LG
Sbjct: 109 PAMVINCYYETWVLG 123

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Cataglyphis bombycina (taxid: 72790)

>sp|P35361|OPSO_LIMPO Ocellar opsin OS=Limulus polyphemus PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLWY  LG+ MI LG + ++GNG+V+Y+ + TK+LRTP+N+LVVNLAFSDFCMM  M 
Sbjct: 42  MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFMM 101

Query: 61  PTMVLNCFYETWTLGKF 77
           PTM  NCF ETW LG F
Sbjct: 102 PTMASNCFAETWILGPF 118

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Limulus polyphemus (taxid: 6850)

>sp|P35360|OPSL_LIMPO Lateral eye opsin OS=Limulus polyphemus PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLWY  LG+ MI LG + ++GNG+V+Y+ + TK+LRTP+N+LVVNLAFSDFCMM  M 
Sbjct: 42  MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFMM 101

Query: 61  PTMVLNCFYETWTLGKF 77
           PTM  NCF ETW LG F
Sbjct: 102 PTMTSNCFAETWILGPF 118

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Limulus polyphemus (taxid: 6850)

>sp|Q17292|OPSD_CAMAT Rhodopsin OS=Camponotus atriceps PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 1/79 (1%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG  +  LG +S++GNG+V+YIF  TK+LRTPSN+LVVNLA SDF MM  M+
Sbjct: 49  MNPLWHALLGFVIGVLGVISVIGNGMVIYIFTTTKSLRTPSNLLVVNLAISDFLMMLCMS 108

Query: 61  PTMVLNCFYETWTLGK-FC 78
           P MV+NC+YETW LG  FC
Sbjct: 109 PAMVINCYYETWVLGPLFC 127

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Camponotus abdominalis (taxid: 47731)

>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera PE=1 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 62/79 (78%), Gaps = 1/79 (1%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           ++P+W+  LG  +  LG +S +GNG+VVYIFL TK+LRTPSN+ V+NLA S+F MMF M+
Sbjct: 47  LNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMS 106

Query: 61  PTMVLNCFYETWTLGK-FC 78
           P MV+NC+YETW LG  FC
Sbjct: 107 PPMVINCYYETWVLGPLFC 125

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

>sp|O01668|OPS6_DROME Opsin Rh6 OS=Drosophila melanogaster GN=Rh6 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 57/77 (74%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           + P+W+  +G  +  LGTMS+ GN IV+YIF  +K LRTPSN+ VVNLAFSDF MMF+M 
Sbjct: 42  LEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMF 101

Query: 61  PTMVLNCFYETWTLGKF 77
           P +VLN FY TW +G F
Sbjct: 102 PPVVLNGFYGTWIMGPF 118

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
46561744	381	putative rhodopsin [Homalodisca vitripen	0.916	0.202	0.701	8e-25
193624882	377	PREDICTED: opsin-1-like [Acyrthosiphon p	0.928	0.206	0.666	9e-25
53830702	381	putative rhodopsin [Oncometopia nigrican	0.916	0.202	0.701	9e-25
10441606	378	long-wavelength like opsin [Megoura vici	0.928	0.206	0.666	1e-24
157326195	284	long-wavelength sensitive opsin [Sycophi	0.892	0.264	0.68	5e-24
283135100	386	long wavelength sensitive opsin 1 [Nason	0.892	0.194	0.68	5e-24
157326175	284	long-wavelength sensitive opsin [Dibrach	0.892	0.264	0.68	6e-24
157326177	284	long-wavelength sensitive opsin [Dibrach	0.892	0.264	0.68	6e-24
170525351	284	long wave-length sensitive opsin [Neosyc	0.892	0.264	0.666	1e-23
410184885	152	long wavelength rhodopsin, partial [Cera	0.928	0.513	0.645	3e-23

>gi|46561744|gb|AAT01077.1| putative rhodopsin [Homalodisca vitripennis]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 64/77 (83%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG  M+ LG +++ GNG+VVYIF CTK LRTPSN+LVVNLAFSDF MMF+MA
Sbjct: 47  MNPLWHSLLGFAMVVLGFIAVTGNGMVVYIFSCTKALRTPSNLLVVNLAFSDFLMMFTMA 106

Query: 61  PTMVLNCFYETWTLGKF 77
           P MVLNC+YETW LG F
Sbjct: 107 PPMVLNCYYETWVLGPF 123

Source: Homalodisca vitripennis

Species: Homalodisca vitripennis

Genus: Homalodisca

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193624882|ref|XP_001947730.1| PREDICTED: opsin-1-like [Acyrthosiphon pisum]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 64/78 (82%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M  +WY+ LG+T+  LG +S+VGNG+V+YIF CTKNLRTPSN+L+VNLAFSDFC+MF+M 
Sbjct: 48  MESMWYKWLGVTIFFLGILSVVGNGMVIYIFTCTKNLRTPSNLLIVNLAFSDFCLMFTMC 107

Query: 61  PTMVLNCFYETWTLGKFC 78
           P MV NCFYETW  G F 
Sbjct: 108 PAMVWNCFYETWMFGPFA 125

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|53830702|gb|AAU95194.1| putative rhodopsin [Oncometopia nigricans]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 64/77 (83%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLW+  LG  M+ LG +++ GNG+VVYIF CTK LRTPSN+LVVNLAFSDF MMF+MA
Sbjct: 47  MNPLWHSLLGFAMVVLGFIAVTGNGMVVYIFSCTKALRTPSNLLVVNLAFSDFLMMFTMA 106

Query: 61  PTMVLNCFYETWTLGKF 77
           P MVLNC+YETW LG F
Sbjct: 107 PPMVLNCYYETWVLGPF 123

Source: Oncometopia nigricans

Species: Oncometopia nigricans

Genus: Oncometopia

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|10441606|gb|AAG17119.1| long-wavelength like opsin [Megoura viciae]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 64/78 (82%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M  +WY+ LG+T+  LG +S+VGNG+V+YIF CTKNLRTPSN+L+VNLAFSDFC+MF+M 
Sbjct: 49  MESMWYKWLGVTIFFLGILSVVGNGMVIYIFTCTKNLRTPSNLLIVNLAFSDFCLMFTMC 108

Query: 61  PTMVLNCFYETWTLGKFC 78
           P MV NCFYETW  G F 
Sbjct: 109 PAMVWNCFYETWMFGPFA 126

Source: Megoura viciae

Species: Megoura viciae

Genus: Megoura

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157326195|gb|ABV44323.1| long-wavelength sensitive opsin [Sycophila sp. 2 JHX-2007]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 63/75 (84%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          M+PLWY  LG  + CLG +S+ GNG+VVYIF  TK+LRTPSN+LV+NLAFSDFCMMF+M+
Sbjct: 7  MNPLWYGILGFVIGCLGVISVTGNGMVVYIFASTKSLRTPSNLLVINLAFSDFCMMFTMS 66

Query: 61 PTMVLNCFYETWTLG 75
          P MV+NC+YETW  G
Sbjct: 67 PPMVINCYYETWVFG 81

Source: Sycophila sp. 2 JHX-2007

Species: Sycophila sp. 2 JHX-2007

Genus: Sycophila

Family: Eurytomidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283135100|ref|NP_001164379.1| long wavelength sensitive opsin 1 [Nasonia vitripennis]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 63/75 (84%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
           M+PLWY  LG  + CLG +S+ GNG+VVYIF  TK+LRTPSN+LV+NLAFSDFCMMF+M+
Sbjct: 54  MNPLWYGILGFVIGCLGCISVAGNGMVVYIFASTKSLRTPSNLLVINLAFSDFCMMFTMS 113

Query: 61  PTMVLNCFYETWTLG 75
           P MV+NC+YETW  G
Sbjct: 114 PPMVINCYYETWVFG 128

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157326175|gb|ABV44313.1| long-wavelength sensitive opsin [Dibrachys sp. n. JHX-2007]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          M+PLWY  LG  + CLG +S++GNG+VVYIF  TK+LRTPSN+LV+NLAFSDFCMMF+M+
Sbjct: 7  MNPLWYGILGFVIGCLGCVSVIGNGMVVYIFASTKSLRTPSNLLVINLAFSDFCMMFTMS 66

Query: 61 PTMVLNCFYETWTLG 75
          P MV+NC+YETW  G
Sbjct: 67 PPMVINCYYETWVFG 81

Source: Dibrachys sp. n. JHX-2007

Species: Dibrachys sp. n. JHX-2007

Genus: Dibrachys

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157326177|gb|ABV44314.1| long-wavelength sensitive opsin [Dibrachys sp. n. JHX-2007]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          M+PLWY  LG  + CLG +S++GNG+VVYIF  TK+LRTPSN+LV+NLAFSDFCMMF+M+
Sbjct: 7  MNPLWYGILGFVIGCLGCVSVIGNGMVVYIFASTKSLRTPSNLLVINLAFSDFCMMFTMS 66

Query: 61 PTMVLNCFYETWTLG 75
          P MV+NC+YETW  G
Sbjct: 67 PPMVINCYYETWVFG 81

Source: Dibrachys sp. n. JHX-2007

Species: Dibrachys sp. n. JHX-2007

Genus: Dibrachys

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170525351|gb|ACB21034.1| long wave-length sensitive opsin [Neosycophila sp. XJH_neo1] gi|170525353|gb|ACB21035.1| long wave-length sensitive opsin [Neosycophila sp. XJH_neo2]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 64/75 (85%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          M+PLWY  LG  + CLG +S++GNG+VV+IF  TK+LRTPSN+LV+NLAFSDFCMMF+M+
Sbjct: 7  MNPLWYGILGFVIGCLGCVSVIGNGMVVFIFASTKSLRTPSNLLVINLAFSDFCMMFTMS 66

Query: 61 PTMVLNCFYETWTLG 75
          P MV+NC+YETW  G
Sbjct: 67 PPMVINCYYETWVFG 81

Source: Neosycophila sp. XJH_neo1

Species: Neosycophila sp. XJH_neo1

Genus: Neosycophila

Family: Agaonidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|410184885|gb|AFV66216.1| long wavelength rhodopsin, partial [Cerapachys biroi]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          M+PLW+  LGL +  LG +S++GNG+VVYIF+ TKNLRTPSN+LV+NLA SDFCMM +M+
Sbjct: 13 MNPLWHAILGLVIGVLGMVSIIGNGMVVYIFIATKNLRTPSNLLVINLAVSDFCMMLAMS 72

Query: 61 PTMVLNCFYETWTLGK-FC 78
          P M++NC+YETW LG  FC
Sbjct: 73 PAMIINCYYETWVLGPLFC 91

Source: Cerapachys biroi

Species: Cerapachys biroi

Genus: Cerapachys

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
FB|FBgn0019940	369	Rh6 "Rhodopsin 6" [Drosophila	0.916	0.208	0.584	6.6e-21
FB|FBgn0003248	381	Rh2 "Rhodopsin 2" [Drosophila	0.892	0.196	0.573	2.9e-19
FB|FBgn0002940	373	ninaE "neither inactivation no	0.892	0.201	0.52	1.4e-17
FB|FBgn0003249	383	Rh3 "Rhodopsin 3" [Drosophila	0.785	0.172	0.507	2e-12
UNIPROTKB|Q4R1I4	706	OPN4 "Melanopsin" [Branchiosto	0.892	0.106	0.4	1e-11
UNIPROTKB|F1NA47	542	OPN4-1 "Uncharacterized protei	0.857	0.132	0.391	1.5e-11
RGD|621701	474	Opn4 "opsin 4" [Rattus norvegi	0.904	0.160	0.381	6.3e-11
UNIPROTKB|Q5XXP2	469	OPN4 "Melanopsin" [Phodopus su	0.809	0.144	0.411	7.9e-11
UNIPROTKB|F1SEN9	358	OPN4 "Uncharacterized protein"	0.845	0.198	0.380	1.2e-10
UNIPROTKB|E2R3W5	481	OPN4 "Uncharacterized protein"	0.809	0.141	0.411	1.4e-10

FB|FBgn0019940 Rh6 "Rhodopsin 6" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 45/77 (58%), Positives = 57/77 (74%)

Query:     1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
             + P+W+  +G  +  LGTMS+ GN IV+YIF  +K LRTPSN+ VVNLAFSDF MMF+M 
Sbjct:    42 LEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMF 101

Query:    61 PTMVLNCFYETWTLGKF 77
             P +VLN FY TW +G F
Sbjct:   102 PPVVLNGFYGTWIMGPF 118

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 43/75 (57%), Positives = 57/75 (76%)

Query:     1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
             M P+  + LGL  + +  +S  GNG+VVYIF  TK+LRTP+N+LV+NLAFSDFCMM S +
Sbjct:    52 MDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQS 111

Query:    61 PTMVLNCFYETWTLG 75
             P M++N +YETW LG
Sbjct:   112 PVMIINFYYETWVLG 126

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007602 "phototransduction" evidence=IGI;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0002940 ninaE "neither inactivation nor afterpotential E" [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 39/75 (52%), Positives = 54/75 (72%)

Query:     1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
             M P+W + L   MI +G +S  GNG+V+YIF  TK+LRTP+N+LV+NLA SDF +M +  
Sbjct:    45 MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNT 104

Query:    61 PTMVLNCFYETWTLG 75
             P M +N ++ETW LG
Sbjct:   105 PMMGINLYFETWVLG 119

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007602 "phototransduction" evidence=ISS;IMP;NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0016029 "subrhabdomeral cisterna" evidence=IDA

GO:0005767 "secondary lysosome" evidence=IDA

GO:0016027 "inaD signaling complex" evidence=TAS;IPI

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0042052 "rhabdomere development" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP

GO:0009642 "response to light intensity" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0043052 "thermotaxis" evidence=IMP

FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 34/67 (50%), Positives = 45/67 (67%)

Query:     9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
             LG   I    MSM+GNG+V+++F   K+LRTPSNILV+NLAF DF MM    P  + N F
Sbjct:    61 LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK-TPIFIYNSF 119

Query:    69 YETWTLG 75
             ++ + LG
Sbjct:   120 HQGYALG 126

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016039 "absorption of UV light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)]

 Score = 170 (64.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 30/75 (40%), Positives = 44/75 (58%)

Query:     3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
             PL +  +G  + C+G   M GN +VVY F+ +K LRTP+N  ++NLA SDF M  +  P 
Sbjct:    82 PLAHYIVGTAVFCIGCCGMFGNAVVVYSFIKSKGLRTPANFFIINLALSDFLMNLTNMPI 141

Query:    63 MVLNCFYETWTLGKF 77
               +N  ++ W L  F
Sbjct:   142 FAVNSAFQRWLLSDF 156

GO:0004744 "retinal isomerase activity" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007602 "phototransduction" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0009584 "detection of visible light" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1NA47 OPN4-1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query:     2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 61
             H L+   +G  ++ +G++ ++GN +V+Y F   K LRTP N  ++NLA SDF M  S AP
Sbjct:    19 HVLY--TVGTCVLVIGSIGIIGNLLVLYAFYSNKKLRTPQNFFIMNLAVSDFLMSASQAP 76

Query:    62 TMVLNCFYETWTLG 75
                +N  +  W LG
Sbjct:    77 ICFINSLHREWILG 90

GO:0007601 "visual perception" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

RGD|621701 Opn4 "opsin 4" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 29/76 (38%), Positives = 45/76 (59%)

Query:     6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
             +  LG  ++ +G   M+GN  V+Y F   + LRTP+N+L++NLA SDF M F+ AP    
Sbjct:    70 HYTLGTVILLVGLTGMLGNLTVIYTFCRNRGLRTPANMLIINLAVSDFLMSFTQAPVFFA 129

Query:    66 NCFYETWTLGKFCLRF 81
             +  Y+ W  G+   +F
Sbjct:   130 SSLYKKWLFGETGCKF 145

GO:0005502 "11-cis retinal binding" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=ISO;IDA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISO;IDA

GO:0009584 "detection of visible light" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=ISO

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=ISO;ISS

GO:0048511 "rhythmic process" evidence=IEA

UNIPROTKB|Q5XXP2 OPN4 "Melanopsin" [Phodopus sungorus (taxid:10044)]

 Score = 159 (61.0 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 28/68 (41%), Positives = 44/68 (64%)

Query:     9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
             LG  ++ +G   M+GN  V+Y F  +++LRTP+N+L++NLA SDF M F+ AP    +  
Sbjct:    72 LGTVILLVGLTGMLGNLTVIYTFCRSRSLRTPANMLIINLAVSDFLMSFTQAPVFFASSL 131

Query:    69 YETWTLGK 76
             Y+ W  G+
Sbjct:   132 YKKWLFGE 139

GO:0005502 "11-cis retinal binding" evidence=ISS

GO:0007602 "phototransduction" evidence=ISS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS

GO:0009584 "detection of visible light" evidence=ISS

GO:0016021 "integral to membrane" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=ISS

UNIPROTKB|F1SEN9 OPN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query:     6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVL 65
             +  LG  ++ +G   M+GN  V+Y F  ++ LRTP+N+ ++NLA SDF M F+ AP    
Sbjct:    70 HYTLGTVILLVGLTGMLGNLTVIYTFCRSRGLRTPANMFIINLAVSDFLMSFTQAPVFFA 129

Query:    66 NCFYETWTLGK 76
             +  Y+ W  G+
Sbjct:   130 SSLYKQWLFGE 140

GO:0042752 "regulation of circadian rhythm" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|E2R3W5 OPN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 28/68 (41%), Positives = 43/68 (63%)

Query:     9 LGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 68
             LG  ++ +G   M+GN +V+Y F  T+ LRTPSN+ ++NLA SDF M F+ AP    +  
Sbjct:    68 LGTVILLVGLTGMLGNLMVIYTFCRTRGLRTPSNMFIINLAVSDFFMSFTQAPVFFASSL 127

Query:    69 YETWTLGK 76
             ++ W  G+
Sbjct:   128 HKRWLFGE 135

GO:0042752 "regulation of circadian rhythm" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17053	OPSD_APIME	No assigned EC number	0.5949	0.9285	0.2068	yes	N/A
O01668	OPS6_DROME	No assigned EC number	0.5844	0.9166	0.2086	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	9e-06

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 41.1 bits (97), Expect = 9e-06
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 29 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKF 77
           + L TK LRTP+NI ++NLA +D   + ++ P  +       W  G  
Sbjct: 1  LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDA 49

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG4219|consensus	423		99.74
PHA03234	338	DNA packaging protein UL33; Provisional	99.69
PHA02834	323	chemokine receptor-like protein; Provisional	99.53
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.5
KOG4220|consensus	503		99.41
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.32
PHA03235	409	DNA packaging protein UL33; Provisional	99.31
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.23
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.52
KOG2087|consensus	363		97.88
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.73
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.37
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.36
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	96.74
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	96.67
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.63
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	95.36
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	95.19
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	88.31

>KOG4219|consensus

Probab=99.74  E-value=3.9e-18  Score=110.69  Aligned_cols=81  Identities=28%  Similarity=0.430  Sum_probs=76.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCcccccccccee
Q psy12172          2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRF   81 (84)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~   81 (84)
                      +.+.+.+.+++|..+..++++||.+|+|++..+|++|+.+|+|+.|||+||+.++++..|+........+|.+|.+.|++
T Consensus        31 p~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f  110 (423)
T KOG4219|consen   31 PAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRF  110 (423)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeee
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             e
Q psy12172         82 L   82 (84)
Q Consensus        82 ~   82 (84)
                      .
T Consensus       111 ~  111 (423)
T KOG4219|consen  111 V  111 (423)
T ss_pred             c
Confidence            5

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.69  E-value=1.2e-16  Score=103.15  Aligned_cols=77  Identities=13%  Similarity=0.049  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHh--hcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIF--LCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~--~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+.....+|.+++++|++||++++++.  .+++++|+++|+|+.|||+||++++++ .|+..... .++|.+|+..||+.
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~-~~~w~fG~~lCk~~  108 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR-EALFNFNQAFCQCV  108 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH-hCCccCchhHHHHH
Confidence            456788999999999999999999844  566677899999999999999999887 45544433 45799999999975


Q ss_pred             c
Q psy12172         83 V   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus       109 ~  109 (338)
T PHA03234        109 L  109 (338)
T ss_pred             H
Confidence            4

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.53  E-value=4.1e-14  Score=90.71  Aligned_cols=75  Identities=19%  Similarity=0.375  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+.+....+.+++++|++||+++++++.+++++ ++.|+++.|||++|++. ....|..+... .++|.+|+..|++.
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~  101 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLV  101 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhH
Confidence            456778899999999999999999988776654 57899999999999986 45588876654 45799999999975

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.50  E-value=1.3e-13  Score=91.19  Aligned_cols=75  Identities=24%  Similarity=0.579  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .......+|.+++++|++||+++++++.+ |++|+++|+++.|||++|++... ..|+.+... .++|.+|+..||+.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~  171 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVI  171 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhH
Confidence            45677888999999999999999977654 77899999999999999998865 488877655 46899999999975

>KOG4220|consensus

Probab=99.41  E-value=9.9e-15  Score=95.54  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          8 ALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         8 ~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ...++-..+.++.++||++|+..+..+|++|+..|+|+++||+||++.+.+.+|....+...|.|++|...|.++
T Consensus        32 ~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlW  106 (503)
T KOG4220|consen   32 FIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLW  106 (503)
T ss_pred             eeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHH
Confidence            345566788899999999999999999999999999999999999999999999999999999999999999864

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.32  E-value=3.1e-12  Score=81.99  Aligned_cols=76  Identities=26%  Similarity=0.488  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+.....++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++. .|........++|.+|+..|++.
T Consensus        39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~~~~~~~~~~C~~~  114 (335)
T PHA03087         39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILFQWSFGEFACKIV  114 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhCCCCCCCcHHHHHH
Confidence            456778889999999999999999998887 88999999999999999988776 67666666678899999999864

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.31  E-value=1.2e-11  Score=81.84  Aligned_cols=77  Identities=12%  Similarity=0.025  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcc-cC-CCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCT-KN-LRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~-~~-l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+.....++.+++++|++||+++++++.++ |+ .++..++|+.|||++|++. +...|+.+... ...|..|+..|++.
T Consensus        31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~~  108 (409)
T PHA03235         31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKFA  108 (409)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehhH
Confidence            456788899999999999999999875433 32 2356689999999999987 45588776431 22233457899976


Q ss_pred             c
Q psy12172         83 V   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus       109 ~  109 (409)
T PHA03235        109 S  109 (409)
T ss_pred             H
Confidence            4

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.23  E-value=1.2e-11  Score=74.99  Aligned_cols=60  Identities=35%  Similarity=0.667  Sum_probs=54.5

Q ss_pred             hhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172         23 GNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus        23 gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ||.+++.++.++|++|++.++++.|||++|++.++...|........++|.+++..|++.
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~   60 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIF   60 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            899999999999999999999999999999999999888888888778999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.52  E-value=4.4e-08  Score=61.41  Aligned_cols=49  Identities=27%  Similarity=0.561  Sum_probs=44.4

Q ss_pred             HHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12172         18 TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLN   66 (84)
Q Consensus        18 ~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~   66 (84)
                      ++|+.||..++.++.++|++|+|.++++..+|++|++......|.....
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~   50 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL   50 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4688999999999999999999999999999999999999888877643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=97.88  E-value=8.9e-06  Score=53.15  Aligned_cols=72  Identities=15%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-------Cccccccccceeec
Q psy12172         12 TMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFY-------ETWTLGKFCLRFLV   83 (84)
Q Consensus        12 ~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~-------~~~~~~~~~C~~~~   83 (84)
                      ...++..+++.||.+|+......+...++..+++.|||++|+++++...-....+...       ..|......|++.|
T Consensus        30 ~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aG  108 (363)
T KOG2087|consen   30 SVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAG  108 (363)
T ss_pred             hhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHH
Confidence            3456778899999999988877777777889999999999999998766555544432       22445667888754

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.73  E-value=0.00044  Score=44.52  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhHHhhHHh---hcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q psy12172          1 MHPLWYQALGLTMICLGTMSMVGNGIVVYIF---LCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF   68 (84)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~g~~gN~~vl~~~---~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~   68 (84)
                      |.+..+.....+.....++|+.||+.++.+.   +++++.-+|.+..+.+||+++++.-............
T Consensus         1 M~s~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~   71 (303)
T PF05296_consen    1 MLSSLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFF   71 (303)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788889999999999999877554   3444445699999999999998877765544444443

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.37  E-value=0.0014  Score=39.96  Aligned_cols=49  Identities=12%  Similarity=-0.012  Sum_probs=34.8

Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceeec
Q psy12172         35 KNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFLV   83 (84)
Q Consensus        35 ~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~~   83 (84)
                      ++.|...+-++.||.++|++.++............++-.-++..|..+|
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqG   78 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQG   78 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhH
Confidence            4456677889999999999999986654444444444444678888764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.36  E-value=0.0019  Score=41.83  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         3 ~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ++....+..+..+...++++|-.+++..+++.|++|++.+-++.-++++|++..........    .++-.-++..|+++
T Consensus         3 ~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~----~~~~~~~s~lC~~Q   78 (303)
T PF05462_consen    3 KQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTL----SPSAGENSFLCQFQ   78 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCcchhhH
Confidence            34455667777788889999999999999999999999999999999999987765332211    12223346778766


Q ss_pred             c
Q psy12172         83 V   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus        79 a   79 (303)
T PF05462_consen   79 A   79 (303)
T ss_pred             h
Confidence            4

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.74  E-value=0.0077  Score=38.01  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             HHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhh
Q psy12172         16 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA   60 (84)
Q Consensus        16 ~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~   60 (84)
                      +...|++.|..++..+.+.+++|++-+.+-.+.|++|.+.++...
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l   47 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFL   47 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999888533

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.67  E-value=0.0088  Score=38.33  Aligned_cols=53  Identities=21%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             HHHHHHHhhHHhhHHhhcccCCCC-hhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q psy12172         16 LGTMSMVGNGIVVYIFLCTKNLRT-PSNILVVNLAFSDFCMMFSMAPTMVLNCFY   69 (84)
Q Consensus        16 ~~~~g~~gN~~vl~~~~~~~~l~~-~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~   69 (84)
                      +..+|+++|.+-+.+.. +|++|+ +.|.++.-+|++|+...+...+........
T Consensus         6 ~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~   59 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFII   59 (318)
T ss_pred             EeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35679999998887654 567776 899999999999999999888877755443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.63  E-value=0.008  Score=38.31  Aligned_cols=44  Identities=11%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172         38 RTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus        38 ~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+|++..+.|||+++.++.++.......... +...+++.+||+.
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~-~~~~~~d~gCK~v   51 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMAFF-GWKFFDDIGCKIV   51 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHh-hcccCCCceeeee
Confidence            4599999999999999998865544433333 3334799999964

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=95.36  E-value=0.13  Score=33.57  Aligned_cols=55  Identities=15%  Similarity=0.167  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHh
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM   59 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~   59 (84)
                      .+..++..+.+.+++-.+-....+.++.+++..|.|.|-.+.-||+.|+......
T Consensus        31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~   85 (313)
T PF10321_consen   31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFIN   85 (313)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhh
Confidence            3456777788888888888888888888877778899999999999999987653

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.19  E-value=0.086  Score=33.70  Aligned_cols=52  Identities=17%  Similarity=0.186  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhHHhhHHhhcc-cCCCChhHHHHHHHHHHHHHHHHHhhHHH
Q psy12172         12 TMICLGTMSMVGNGIVVYIFLCT-KNLRTPSNILVVNLAFSDFCMMFSMAPTM   63 (84)
Q Consensus        12 ~~~~~~~~g~~gN~~vl~~~~~~-~~l~~~~~~~l~nLa~~D~l~~~~~~p~~   63 (84)
                      ++.+.+..|+..|.++++.+.++ ++.-+...+++.|-|+.|++.+....-.+
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q   56 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ   56 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46678889999999999877654 44345678999999999999987654433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.31  E-value=0.38  Score=29.59  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=0.7

Q ss_pred             HHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHH
Q psy12172         17 GTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS   58 (84)
Q Consensus        17 ~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~   58 (84)
                      ..+++.+-.+.+......|++|+..+....||++++++..+.
T Consensus        11 ~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~   52 (242)
T PF00002_consen   11 CSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLS   52 (242)
T ss_dssp             HH----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHH
Confidence            334444444444444445677777788889999999887765

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-06
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-06
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-04

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 29  YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLG 75
           Y+F  TK+L+TP+N+ ++NLAFSDF   FS+    P M ++CF + W  G
Sbjct: 57  YLFTKTKSLQTPANMFIINLAFSDFT--FSLVNGFPLMTISCFLKKWIFG 104

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 29  YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLG 75
           Y+F  TK+L+TP+N+ ++NLAFSDF   FS+    P M ++CF + W  G
Sbjct: 56  YLFTKTKSLQTPANMFIINLAFSDFT--FSLVNGFPLMTISCFLKKWIFG 103

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 4   LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTM 63
           +W   +G+ M  +    + GN +V+      + L+T +N  + +LA +D  M  ++ P  
Sbjct: 180 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 239
Query: 64  VLNCFYETWTLGKFCLRF 81
             +   +TWT G F   F
Sbjct: 240 AAHILTKTWTFGNFWCEF 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-26
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	8e-25
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	8e-11
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-10
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	9e-10
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	1e-09
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	4e-09
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	5e-09
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	9e-09
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	1e-08
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-08
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	3e-08
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	5e-08
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	6e-07
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-06

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 98.1 bits (244), Expect = 5e-26
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM-FSM 59
           +    Y +LG+ +   G +   GNGIV+Y+F  TK+L+TP+N+ ++NLAFSDF     + 
Sbjct: 29  VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNG 88

Query: 60  APTMVLNCFYETWTLGKF 77
            P M ++CF + W  G  
Sbjct: 89  FPLMTISCFLKKWIFGFA 106

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 93.6 bits (233), Expect = 8e-25
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
             P  +  L   M  L  +    N + +Y+ +  K LRTP N +++NLA +D  M+F   
Sbjct: 33  AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGF 92

Query: 61  PTMVLNCFYETWTLGKF 77
            T +    +  +  G  
Sbjct: 93  TTTLYTSLHGYFVFGPT 109

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 55.3 bits (132), Expect = 8e-11
 Identities = 12/77 (15%), Positives = 23/77 (29%)

Query: 3   PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
               +   +  I +    ++ N  V+     TK    P    + NLA SD     +    
Sbjct: 60  ENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTAN 119

Query: 63  MVLNCFYETWTLGKFCL 79
           ++L+             
Sbjct: 120 LLLSGATTYKLTPAQWF 136

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 2   HPLWYQAL---GLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 58
            P W   L     T+I +   S+VGN +V++I L  K +RT +N  +VNLAF++  M   
Sbjct: 27  QPAWQIVLWAAAYTVIVV--TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAF 84

Query: 59  MAPTMVLNCFYETWTLGKF 77
                     +  W  G F
Sbjct: 85  NTVVNFTYAVHNEWYYGLF 103

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 52.0 bits (124), Expect = 9e-10
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 2   HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 60
             +W   +G+ M  +    + GN +V+      + L+T +N  + +LA +D  M +  + 
Sbjct: 36  DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV- 94

Query: 61  PTMVLNCFYETWTLGK-FC 78
           P    +   + WT G  +C
Sbjct: 95  PFGAAHILMKMWTFGNFWC 113

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 50.5 bits (120), Expect = 4e-09
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSM 59
          M       L + +  +  +++  N +V+Y     + L T  N+ +V+L+ +D  +    M
Sbjct: 3  MASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVM 62

Query: 60 APTMVLNCFYETWTLGKF 77
           P  +L      W+LG+ 
Sbjct: 63 -PMNILYLLMSKWSLGRP 79

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 3  PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMAP 61
                + L    L  ++++GN +V+      ++L+T +N  + +LA +D  + +FSM  
Sbjct: 20 TFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSM-N 78

Query: 62 TMVLNCFYETWTLGKF 77
             L      W LG  
Sbjct: 79 LYTLYTVIGYWPLGPV 94

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 49.4 bits (117), Expect = 9e-09
 Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 2  HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 60
            +         + +  ++++GN +V +      NL+  +N  VV+LA +D  + + ++ 
Sbjct: 17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76

Query: 61 PTMVLNCFYETWTLGK-FCL 79
            + ++     +      CL
Sbjct: 77 FAITIS---TGFCAACHGCL 93

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 2   HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 60
               +    L+   L    + GNG+V    L  + L+T +N LVV+LA +D  +    M 
Sbjct: 34  QARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93

Query: 61  PTMVLNCFYETWTLGKF 77
             + L      W   + 
Sbjct: 94  WVVYLEVTGGVWNFSRI 110

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 1   MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
              +W   +G+ M  +    + GN +V+      + L+T +N  + +LA +D  M  ++ 
Sbjct: 177 ADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV 236

Query: 61  PTMVLNCFYETWTLGK-FC 78
           P    +   +TWT G  +C
Sbjct: 237 PFGAAHILTKTWTFGNFWC 255

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 13 MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETW 72
          ++C+  + + GN +V+Y+ +    ++T +NI + NLA +D     ++ P   +N    TW
Sbjct: 26 IVCV--VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTL-PFQSVNYLMGTW 82

Query: 73 TLGKF 77
            G  
Sbjct: 83 PFGNI 87

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 47.0 bits (111), Expect = 5e-08
 Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 4   LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMAPT 62
           +         + +  ++++GN +V +      NL+  +N  VV+LA +D  + + ++   
Sbjct: 29  MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88

Query: 63  MVLNCFYETWTLGK-FCL 79
           + ++     +      CL
Sbjct: 89  ITIS---TGFCAACHGCL 103

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 43.9 bits (104), Expect = 6e-07
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 1  MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA 60
          +   W   + L M  +  + + GN +V+     T+ L+T +N+ + +LA +D  +   + 
Sbjct: 6  LSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVV 65

Query: 61 PTMVLNCFYETWTLGK-FCL 79
          P         TW  G   C 
Sbjct: 66 PFGATLVVRGTWLWGSFLCE 85

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 12  TMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYET 71
           ++I L    +VGNG+V+ +    K LR+ ++   ++L+ +D   + ++ P   ++     
Sbjct: 56  SIIFL--TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAVAN- 111

Query: 72  WTLGKF 77
           W  G F
Sbjct: 112 WYFGNF 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.7
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.69
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.67
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.66
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.66
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.66
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.66
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.65
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.65
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.65
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.61
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.6
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.6
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.6
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.58
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.58
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.55
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.53
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.22

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.70  E-value=6.4e-17  Score=100.14  Aligned_cols=76  Identities=18%  Similarity=0.395  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+.+...+|.+++++|++||+++++++.++|++|+++|+++.|||++|++.++. .|....... ++|.+|+..|+..
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~-~~~~~~~~~c~~~   85 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASKV-NGWIFGTFLCKVV   85 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH-SSSCCSSHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhcc-CCCccchhHHHHH
Confidence            356778889999999999999999999999999999999999999999999876 666665544 5699999999864

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.69  E-value=6.6e-17  Score=106.54  Aligned_cols=79  Identities=24%  Similarity=0.469  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          4 LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         4 ~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+......++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.++..+|..+.....+.|.+|+..|++.
T Consensus        38 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~  116 (500)
T 2rh1_A           38 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW  116 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence            3456678889999999999999999999999999999999999999999999999999999988889999999999865

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.67  E-value=1e-16  Score=106.05  Aligned_cols=78  Identities=19%  Similarity=0.334  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCC---ChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh--Cccccccccc
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLR---TPSNILVVNLAFSDFCMMFSMAPTMVLNCFY--ETWTLGKFCL   79 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~---~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~--~~~~~~~~~C   79 (84)
                      .+.++.++|.+++++|++||+++++++.++|++|   +++|+|+.|||++|++++++.+|+.+.....  +.|.+|+..|
T Consensus        31 ~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C  110 (510)
T 4grv_A           31 SKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGC  110 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHH
Confidence            4567788999999999999999999998876544   7889999999999999999999998887654  5699999999


Q ss_pred             eee
Q psy12172         80 RFL   82 (84)
Q Consensus        80 ~~~   82 (84)
                      ++.
T Consensus       111 ~~~  113 (510)
T 4grv_A          111 RGY  113 (510)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.66  E-value=8e-17  Score=99.47  Aligned_cols=81  Identities=22%  Similarity=0.360  Sum_probs=74.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCcccccccccee
Q psy12172          2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRF   81 (84)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~   81 (84)
                      +++.+.....++.+++++|++||++++.++.+++++|+++|+++.|||++|++.++...|..+.....++|.+|+..|++
T Consensus         7 ~~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~   86 (315)
T 4amj_A            7 SQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCEL   86 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHH
Confidence            34566788889999999999999999999999999999999999999999999999889999988889999999999986


Q ss_pred             e
Q psy12172         82 L   82 (84)
Q Consensus        82 ~   82 (84)
                      .
T Consensus        87 ~   87 (315)
T 4amj_A           87 W   87 (315)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.66  E-value=4.1e-16  Score=97.67  Aligned_cols=80  Identities=25%  Similarity=0.352  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         3 ~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      +........++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++...|..+.....++|.+|+..|++.
T Consensus        35 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~  114 (349)
T 1u19_A           35 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLE  114 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHH
Confidence            34456778889999999999999999999999999999999999999999999999999998888889999999999864

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.66  E-value=4.3e-16  Score=98.38  Aligned_cols=76  Identities=28%  Similarity=0.403  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          7 QALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         7 ~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .....++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+.....++|.+|+..|++.
T Consensus        33 ~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  108 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFH  108 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhH
Confidence            4457889999999999999999999999999999999999999999999998899988888889999999999864

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.66  E-value=4.4e-16  Score=100.63  Aligned_cols=78  Identities=21%  Similarity=0.373  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          4 LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         4 ~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ..+.....++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. .|..+.....++|.+|+..|++.
T Consensus        15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~   92 (464)
T 4dkl_A           15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIV   92 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhH
Confidence            3456788899999999999999999999999999999999999999999999988 99998888899999999999865

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.65  E-value=2.4e-16  Score=102.55  Aligned_cols=80  Identities=14%  Similarity=0.205  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         3 ~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      +..+.+...++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.++...|........++|.+|+..|++.
T Consensus        17 ~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~~   96 (484)
T 3vw7_A           17 SWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRFV   96 (484)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhHH
Confidence            45567888899999999999999999999999999999999999999999999877444455555556899999999864

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.65  E-value=9.2e-17  Score=103.63  Aligned_cols=80  Identities=20%  Similarity=0.313  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          3 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         3 ~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      +........++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++...|..+.....++|.+|+..|++.
T Consensus         5 ~~~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   84 (452)
T 3rze_A            5 SPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFW   84 (452)
T ss_dssp             ----CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHH
Confidence            34455677889999999999999999999999999999999999999999999999999999999999999999999865

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.65  E-value=2.7e-16  Score=101.81  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         6 ~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ..+...++.+++++|++||+++++++.+++++|+++|+++.|||++|++.+++..|..+.....+.|.+|+..|++.
T Consensus        23 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   99 (467)
T 3uon_A           23 VVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLW   99 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999865

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.60  E-value=8.9e-16  Score=101.36  Aligned_cols=78  Identities=26%  Similarity=0.473  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .......++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++...|..+.....+.|.+++..|++.
T Consensus       181 ~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  258 (514)
T 3sn6_R          181 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW  258 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhH
Confidence            345677889999999999999999999999999999999999999999999999899999999999999999999865

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.60  E-value=8.5e-16  Score=99.88  Aligned_cols=77  Identities=26%  Similarity=0.398  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-Cccccccccceee
Q psy12172          6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFY-ETWTLGKFCLRFL   82 (84)
Q Consensus         6 ~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~-~~~~~~~~~C~~~   82 (84)
                      +.+...++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++...|..+..... ++|.+++..|++.
T Consensus        38 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           38 HAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF  115 (481)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhH
Confidence            3455678899999999999999999999999999999999999999999999989988877666 6899999999865

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.60  E-value=3e-15  Score=99.22  Aligned_cols=75  Identities=19%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          7 QALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         7 ~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .+...++.+++++|++||+++++++.+++++|+++|+|+.|||++|+++++...|..+.. ..+.|.+++..|++.
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~  138 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLR  138 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchH
Confidence            577889999999999999999999999999999999999999999999999988887766 566888998888763

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.58  E-value=5.7e-15  Score=95.80  Aligned_cols=78  Identities=38%  Similarity=0.746  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHh-hHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM-APTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~-~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      .......++.+++++|++||+++++++.++|++|++.|+++.|||++|++.+++. .|..+.....++|.+++..|++.
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~  111 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVY  111 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHH
Confidence            4556778889999999999999999999999999999999999999999999874 88888888888999999999864

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.58  E-value=4.2e-15  Score=97.05  Aligned_cols=77  Identities=19%  Similarity=0.341  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          4 LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         4 ~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ..+.+...++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+ +..|..+..... +|.+|+..|++.
T Consensus        46 ~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C~~~  122 (502)
T 3odu_A           46 FNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLCKAV  122 (502)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhhhhH
Confidence            34677888999999999999999999999999999999999999999999996 468888776655 799999999865

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.55  E-value=1.1e-14  Score=93.80  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          5 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         5 ~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ...+...++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++...|..+..  ...|..++..|++.
T Consensus        30 ~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~--~~~~~~~~~~C~~~  105 (447)
T 4eiy_A           30 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI--STGFCAACHGCLFI  105 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHH--HTTCEEEHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccCccHHHHH
Confidence            45577888999999999999999999999999999999999999999999998889987764  34677788889864

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.53  E-value=9e-15  Score=94.98  Aligned_cols=75  Identities=17%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCccccccccceee
Q psy12172          6 YQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRFL   82 (84)
Q Consensus         6 ~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~~   82 (84)
                      ..+...++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++...|..+...  ..|.++...|++.
T Consensus        21 ~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~   95 (488)
T 3eml_A           21 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFI   95 (488)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHH
Confidence            35677889999999999999999999999999999999999999999999998899877644  3688898999864

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.22  E-value=1.9e-05  Score=39.11  Aligned_cols=29  Identities=17%  Similarity=0.335  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhHHhhcccC
Q psy12172          8 ALGLTMICLGTMSMVGNGIVVYIFLCTKN   36 (84)
Q Consensus         8 ~~~~~~~~~~~~g~~gN~~vl~~~~~~~~   36 (84)
                      +...+|.+++++|++||+++++++.++|-
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~   58 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKG   58 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecc
Confidence            56788999999999999999999887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	1e-08

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.0 bits (113), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 3   PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 62
           P  +  L   M  L  +    N + +Y+ +  K LRTP N +++NLA +D  M+F    T
Sbjct: 34  PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 93

Query: 63  MVLNCFYETWTLGKFC 78
            +    +  +  G   
Sbjct: 94  TLYTSLHGYFVFGPTG 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.65

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=2.7e-16  Score=97.23  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=72.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhHHhhcccCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHhhCcccccccccee
Q psy12172          2 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGKFCLRF   81 (84)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~g~~gN~~vl~~~~~~~~l~~~~~~~l~nLa~~D~l~~~~~~p~~~~~~~~~~~~~~~~~C~~   81 (84)
                      +++.+.++..++.++.++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....+.|..++..|+.
T Consensus        33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~  112 (348)
T d1u19a_          33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL  112 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhh
Confidence            34456678888999999999999999999999999999999999999999999999999999998888999998888875


Q ss_pred             e
Q psy12172         82 L   82 (84)
Q Consensus        82 ~   82 (84)
                      .
T Consensus       113 ~  113 (348)
T d1u19a_         113 E  113 (348)
T ss_dssp             H
T ss_pred             h
Confidence            4