Psyllid ID: psy12189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Secondary Structure (PSIPRED)
ccccHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANysenkgtalltVDQRRWCDLKKRlkiaqplhlpprpdafkYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Flexible Loop (DISEMBL)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSenkgtalltvDQRRWCDLKKrlkiaqplhlpprpdafKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Low Complexity Region (SEG)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Disordered region (IsUnstruct)
**TLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSL****
Disordered Region (DISOPRED)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG*********************************KYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT*
Disordered Region (DISEMBL)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Disordered Region (DISPRO)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q8IZF0	1738	Sodium leak channel non-s	yes	N/A	0.824	0.062	0.712	2e-47
Q6Q760	1738	Sodium leak channel non-s	yes	N/A	0.824	0.062	0.712	2e-47
Q8BXR5	1738	Sodium leak channel non-s	yes	N/A	0.824	0.062	0.712	2e-47
O14234	1854	Calcium-channel protein c	yes	N/A	0.984	0.069	0.242	1e-10
Q6QIY3	1958	Sodium channel protein ty	no	N/A	0.938	0.062	0.290	1e-09
Q28644	1984	Sodium channel protein ty	no	N/A	0.946	0.062	0.271	2e-09
O08562	1984	Sodium channel protein ty	no	N/A	0.946	0.062	0.271	3e-09
P35500	2131	Sodium channel protein pa	no	N/A	0.893	0.054	0.276	3e-09
O46669	1962	Sodium channel protein ty	no	N/A	0.946	0.063	0.278	3e-09
P04775	2005	Sodium channel protein ty	no	N/A	0.938	0.061	0.266	5e-09

>sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein OS=Homo sapiens GN=NALCN PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct: 1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct: 1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query: 121  MLLIV 125
            +LL V
Sbjct: 1225 VLLSV 1229

Voltage-independent, cation-nonselective channel which is permeable to sodium, potassium and calcium ions. Responsible for the background sodium ion leak current in neurons and controls neuronal excitability. Activated either by neuropeptides substance P or neurotensin. Required for normal respiratory rhythm and neonatal survival.
Homo sapiens (taxid: 9606)

>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS=Rattus norvegicus GN=Nalcn PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct: 1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct: 1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query: 121  MLLIV 125
            +LL V
Sbjct: 1225 VLLSV 1229

Voltage-independent, cation-nonselective channel which is permeable to sodium, potassium and calcium ions. Responsible for the background sodium ion leak current in neurons and controls neuronal excitability. Activated either by neuropeptides substance P or neurotensin. Required for normal respiratory rhythm and neonatal survival.

Rattus norvegicus (taxid: 10116)

>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein OS=Mus musculus GN=Nalcn PE=1 SV=2

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct: 1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct: 1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query: 121  MLLIV 125
            +LL V
Sbjct: 1225 VLLSV 1229

Voltage-independent, cation-nonselective channel which is permeable to sodium, potassium and calcium ions. Responsible for the background sodium ion leak current in neurons and controls neuronal excitability. Activated either by neuropeptides substance P or neurotensin. Required for normal respiratory rhythm and neonatal survival.

Mus musculus (taxid: 10090)

>sp|O14234|CCH1_SCHPO Calcium-channel protein cch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cch1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 74/140 (52%), Gaps = 11/140 (7%)

Query: 1    MLTLFEVLSFKGWLDV-RDIL---------KTQLGDAHVIYIHVYIFLGCMIGLTLFVGV 50
            +L LFE+ S +GW+D+ R ++         +T     + ++  ++  +  +  LTLF+ +
Sbjct: 1152 LLALFEIASIEGWVDIMRSVMDITGFNNQPQTNASSGNAMFFVLFNLVSMIYILTLFIAI 1211

Query: 51   VIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPP-RPDAFKYRARIYDVTQNLWFK 109
            +I+NY+E  G+A  T +QR W +L++++K  +P   P  RP   +     + V ++  ++
Sbjct: 1212 IISNYAERTGSAFFTAEQRAWLELRRKIKSMRPSKRPAIRPLGLRGLCYDFAVQKHGIWR 1271

Query: 110  RLIAAVVLINSMLLIVSLAP 129
            R    + +++ + L+    P
Sbjct: 1272 RTFTGLYIVHLLFLLTIFYP 1291

Voltage-gated, high-affinity calcium channel involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones. Functions together with yam8 to ensure that adequate levels of Ca(2+) are supplied to pmr1 to sustain secretion and growth. Required for growth in low-calcium environments.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alpha OS=Mus musculus GN=Scn10a PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)

Query: 2    LTLFEVLSFKGWLDV-------RDILKTQLGDAHVIYIHVY----IFLGCMIGLTLFVGV 50
            L L +V +FKGW+D+       RDI  +Q      +Y+++Y    I  G    L LFVGV
Sbjct: 1359 LALLQVATFKGWMDIMYAAVDSRDI-NSQPNWEESLYMYLYFVVFIIFGGFFTLNLFVGV 1417

Query: 51   VIANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
            +I N+++ K         +T +Q+++ +  K+L   +P    PRP   KY+  ++D+   
Sbjct: 1418 IIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFVFDIVTR 1476

Query: 106  LWFKRLIAAVVLINSMLLIVS 126
              F  +I A++ +N + ++V 
Sbjct: 1477 QAFDIIIMALICLNMITMMVE 1497

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which sodium ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant sodium channel isoform. Its electrophysiological properties vary depending on the type of the associated beta subunits (in vitro). Plays a role in neuropathic pain mechanisms.

Mus musculus (taxid: 10090)

>sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alpha OS=Oryctolagus cuniculus GN=SCN9A PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)

Query: 2    LTLFEVLSFKGWLDVRDI------LKTQLGDAHVIYIHVY----IFLGCMIGLTLFVGVV 51
            L+L +V +FKGW+D+         +  Q    H +Y+++Y    I  G    L LF+GV+
Sbjct: 1394 LSLLQVATFKGWMDIMYAAVDSVNVDQQPSYEHNLYMYIYFVIFIIFGSFFTLNLFIGVI 1453

Query: 52   IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
            I N+++ K         +T +Q+++ +  K+L   +P    PRP   K++  I+D+  N 
Sbjct: 1454 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KFQGCIFDLVTNQ 1512

Query: 107  WFKRLIAAVVLINSMLLIVS 126
             F   I  ++ +N + ++V 
Sbjct: 1513 AFDITIMILICLNMVTMMVE 1532

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Oryctolagus cuniculus (taxid: 9986)

>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus GN=Scn9a PE=1 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 2    LTLFEVLSFKGWLD----------VRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVV 51
            L+L +V +FKGW+D          V +  K +      IY  ++I  G    L LF+GV+
Sbjct: 1395 LSLLQVATFKGWMDIMYAAVDSVNVNEQPKYEYSLYMYIYFVIFIIFGSFFTLNLFIGVI 1454

Query: 52   IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
            I N+++ K         +T +Q+++ +  K+L   +P    PRP   K++  I+D+  N 
Sbjct: 1455 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGN-KFQGCIFDLVTNQ 1513

Query: 107  WFKRLIAAVVLINSMLLIVS 126
             F   I  ++ +N + ++V 
Sbjct: 1514 AFDITIMVLICLNMVTMMVE 1533

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Rattus norvegicus (taxid: 10116)

>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para PE=2 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 17/134 (12%)

Query: 2    LTLFEVLSFKGWL-------DVRDILKTQLGDAHV---IYIHVYIFLGCMIGLTLFVGVV 51
            L LF+V +FKGW+       D R++ K  + + ++   +Y   +I  G    L LF+GV+
Sbjct: 1500 LCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVI 1559

Query: 52   IANYSENKGTA------LLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQN 105
            I N++E K  A       +T DQ+++ +  K++   +PL   PRP  ++ +A ++++  +
Sbjct: 1560 IDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRP-RWRPQAIVFEIVTD 1618

Query: 106  LWFKRLIAAVVLIN 119
              F  +I   + +N
Sbjct: 1619 KKFDIIIMLFIGLN 1632

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Drosophila melanogaster (taxid: 7227)

>sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alpha OS=Canis familiaris GN=SCN10A PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 16/140 (11%)

Query: 2    LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
            L L +V +FKGW+D+       RD+ L+ +  D   +Y++  ++I  G    L LFVGV+
Sbjct: 1365 LALLQVATFKGWMDIMYAAVDARDVNLQPKWEDNVYMYLYFVIFIIFGGFFTLNLFVGVI 1424

Query: 52   IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
            I N+++ K         +T +Q+++ +  K+L   +P    PRP   KY+  ++D+    
Sbjct: 1425 IDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-LNKYQGFVFDIVTKQ 1483

Query: 107  WFKRLIAAVVLINSMLLIVS 126
             F  +I  ++ +N + ++V 
Sbjct: 1484 AFDIVIMVLICLNMITMMVE 1503

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which sodium ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant sodium channel isoform. Its electrophysiological properties vary depending on the type of the associated beta subunits (in vitro). Plays a role in neuropathic pain mechanisms.

Canis familiaris (taxid: 9615)

>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus GN=Scn2a PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 16/139 (11%)

Query: 2    LTLFEVLSFKGWLDV-------RDI-LKTQLGDAHVIYIH--VYIFLGCMIGLTLFVGVV 51
            L+L +V +FKGW+D+       R++ L+ +  D   +Y++  ++I  G    L LF+GV+
Sbjct: 1413 LSLLQVATFKGWMDIMYAAVDSRNVELQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVI 1472

Query: 52   IANYSENKGT-----ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNL 106
            I N+++ K         +T +Q+++ +  K+L   +P    PRP A K++  ++D     
Sbjct: 1473 IDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP-ANKFQGMVFDFVTKQ 1531

Query: 107  WFKRLIAAVVLINSMLLIV 125
             F   I  ++ +N + ++V
Sbjct: 1532 VFDISIMILICLNMVTMMV 1550

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
332026703	3146	Sodium leak channel non-selective protei	0.961	0.040	0.833	2e-56
307176278	3147	Sodium leak channel non-selective protei	0.961	0.040	0.825	8e-56
270002327	1743	hypothetical protein TcasGA2_TC001338 [T	0.961	0.072	0.849	1e-55
189234946	1741	PREDICTED: similar to voltage-gated ion	0.961	0.072	0.849	1e-55
322801440	1742	hypothetical protein SINV_06440 [Solenop	0.961	0.072	0.817	2e-55
340723232	3140	PREDICTED: sodium leak channel non-selec	0.961	0.040	0.817	2e-55
350424274	3146	PREDICTED: sodium leak channel non-selec	0.961	0.040	0.817	2e-55
380029467	2712	PREDICTED: uncharacterized protein LOC10	0.961	0.046	0.817	2e-55
328788957	2991	PREDICTED: sodium leak channel non-selec	0.961	0.042	0.817	3e-55
307203916	1730	Sodium leak channel non-selective protei	0.961	0.072	0.817	3e-55

>gi|332026703|gb|EGI66812.1| Sodium leak channel non-selective protein [Acromyrmex echinatior]

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 113/126 (89%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            M+ LFEVLSFKGWLDVRD+L   LG AH IYIHVYIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 2506 MMALFEVLSFKGWLDVRDVLIKALGPAHAIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 2565

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VL+NS
Sbjct: 2566 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLVNS 2625

Query: 121  MLLIVS 126
             LL VS
Sbjct: 2626 ALLCVS 2631

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176278|gb|EFN65909.1| Sodium leak channel non-selective protein [Camponotus floridanus]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            M+ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 2505 MMALFEVLSFKGWLDVRDVLIKALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 2564

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VLINS
Sbjct: 2565 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLINS 2624

Query: 121  MLLIVS 126
             LL VS
Sbjct: 2625 ALLCVS 2630

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002327|gb|EEZ98774.1| hypothetical protein TcasGA2_TC001338 [Tribolium castaneum]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 113/126 (89%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            MLTLFEVLSFKGWLDVRD+L   LG AH IYIHVYIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 1112 MLTLFEVLSFKGWLDVRDVLIKALGPAHAIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 1171

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN+ FKR IA +VLINS
Sbjct: 1172 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIKFKRYIAMMVLINS 1231

Query: 121  MLLIVS 126
             LL V+
Sbjct: 1232 ALLAVT 1237

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234946|ref|XP_001812120.1| PREDICTED: similar to voltage-gated ion channel [Tribolium castaneum]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 113/126 (89%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            MLTLFEVLSFKGWLDVRD+L   LG AH IYIHVYIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 1111 MLTLFEVLSFKGWLDVRDVLIKALGPAHAIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 1170

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN+ FKR IA +VLINS
Sbjct: 1171 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIKFKRYIAMMVLINS 1230

Query: 121  MLLIVS 126
             LL V+
Sbjct: 1231 ALLAVT 1236

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801440|gb|EFZ22101.1| hypothetical protein SINV_06440 [Solenopsis invicta]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            M+ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 1104 MMALFEVLSFKGWLDVRDVLIKALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 1163

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VL+NS
Sbjct: 1164 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLVNS 1223

Query: 121  MLLIVS 126
             LL VS
Sbjct: 1224 ALLCVS 1229

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723232|ref|XP_003399996.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus terrestris]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ++ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 2502 LMALFEVLSFKGWLDVRDVLIQALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 2561

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VLINS
Sbjct: 2562 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLINS 2621

Query: 121  MLLIVS 126
             LL VS
Sbjct: 2622 ALLCVS 2627

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424274|ref|XP_003493742.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus impatiens]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ++ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 2508 LMALFEVLSFKGWLDVRDVLIQALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 2567

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VLINS
Sbjct: 2568 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLINS 2627

Query: 121  MLLIVS 126
             LL VS
Sbjct: 2628 ALLCVS 2633

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029467|ref|XP_003698393.1| PREDICTED: uncharacterized protein LOC100864571 [Apis florea]

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ++ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 2515 LMALFEVLSFKGWLDVRDVLIKALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 2574

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VLINS
Sbjct: 2575 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLINS 2634

Query: 121  MLLIVS 126
             LL VS
Sbjct: 2635 SLLCVS 2640

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788957|ref|XP_397384.3| PREDICTED: sodium leak channel non-selective protein [Apis mellifera]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            ++ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 2509 LMALFEVLSFKGWLDVRDVLIKALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 2568

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +VLINS
Sbjct: 2569 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVLINS 2628

Query: 121  MLLIVS 126
             LL VS
Sbjct: 2629 SLLCVS 2634

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203916|gb|EFN82823.1| Sodium leak channel non-selective protein [Harpegnathos saltator]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 112/126 (88%)

Query: 1    MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
            M+ LFEVLSFKGWLDVRD+L   LG  H IYIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct: 1104 MMALFEVLSFKGWLDVRDVLIKALGPVHAIYIHIYIFLGCMIGLTLFVGVVIANYSENKG 1163

Query: 61   TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
            TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K+RA IYD+TQN++FKR IA +V+INS
Sbjct: 1164 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGKKFRAFIYDITQNIYFKRFIAVMVIINS 1223

Query: 121  MLLIVS 126
             LL VS
Sbjct: 1224 ALLCVS 1229

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
FB|FBgn0002917	2232	na "narrow abdomen" [Drosophil	0.961	0.056	0.809	4.1e-50
UNIPROTKB|F1LMY0	1008	Nalcn "Sodium leak channel non	0.969	0.125	0.700	2.7e-43
UNIPROTKB|E1BSL8	1738	NALCN "Uncharacterized protein	0.954	0.071	0.72	6.2e-43
UNIPROTKB|F1LMW5	1472	Nalcn "Sodium leak channel non	0.954	0.084	0.712	7.7e-43
UNIPROTKB|E2QZ17	1738	NALCN "Uncharacterized protein	0.954	0.071	0.712	1e-42
UNIPROTKB|Q8IZF0	1738	NALCN "Sodium leak channel non	0.954	0.071	0.712	1e-42
MGI|MGI:2444306	1738	Nalcn "sodium leak channel, no	0.954	0.071	0.712	1e-42
RGD|628710	1738	Nalcn "sodium leak channel, no	0.954	0.071	0.712	1e-42
UNIPROTKB|Q6Q760	1738	Nalcn "Sodium leak channel non	0.954	0.071	0.712	1e-42
UNIPROTKB|E1BK43	1740	NALCN "Uncharacterized protein	0.954	0.071	0.712	1e-42

FB|FBgn0002917 na "narrow abdomen" [Drosophila melanogaster (taxid:7227)]

 Score = 537 (194.1 bits), Expect = 4.1e-50, P = 4.1e-50
 Identities = 102/126 (80%), Positives = 112/126 (88%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             MLTLFEVLSFKGWLDVRD+L   +G  H +YIH+YIFLGCMIGLTLFVGVVIANYSENKG
Sbjct:  1441 MLTLFEVLSFKGWLDVRDVLIKAVGPVHAVYIHIYIFLGCMIGLTLFVGVVIANYSENKG 1500

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRWCDLKKRLKIAQPLHLPPRPD  K RA  YD+TQ++ FKR+IA VVLINS
Sbjct:  1501 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGRKIRAFTYDITQHIIFKRVIAVVVLINS 1560

Query:   121 MLLIVS 126
             MLL ++
Sbjct:  1561 MLLSIT 1566

GO:0005245 "voltage-gated calcium channel activity" evidence=ISS

GO:0005261 "cation channel activity" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0005216 "ion channel activity" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043679 "axon terminus" evidence=IDA

GO:0072347 "response to anesthetic" evidence=IMP

GO:0048512 "circadian behavior" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0050975 "sensory perception of touch" evidence=IMP

UNIPROTKB|F1LMY0 Nalcn "Sodium leak channel non-selective protein" [Rattus norvegicus (taxid:10116)]

 Score = 467 (169.5 bits), Expect = 2.7e-43, P = 2.7e-43
 Identities = 89/127 (70%), Positives = 108/127 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:   840 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 899

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:   900 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 959

Query:   121 MLLIVSL 127
             +LL V +
Sbjct:   960 VLLSVKV 966

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BSL8 NALCN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 468 (169.8 bits), Expect = 6.2e-43, P = 6.2e-43
 Identities = 90/125 (72%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YDVTQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDVTQHPFFKRTIAVLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1LMW5 Nalcn "Sodium leak channel non-selective protein" [Rattus norvegicus (taxid:10116)]

 Score = 466 (169.1 bits), Expect = 7.7e-43, P = 7.7e-43
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:   839 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 898

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:   899 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 958

Query:   121 MLLIV 125
             +LL V
Sbjct:   959 VLLSV 963

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QZ17 NALCN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPMHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

UNIPROTKB|Q8IZF0 NALCN "Sodium leak channel non-selective protein" [Homo sapiens (taxid:9606)]

 Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005272 "sodium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2444306 Nalcn "sodium leak channel, non-selective" [Mus musculus (taxid:10090)]

 Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005272 "sodium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|628710 Nalcn "sodium leak channel, non-selective" [Rattus norvegicus (taxid:10116)]

 Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005272 "sodium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6Q760 Nalcn "Sodium leak channel non-selective protein" [Rattus norvegicus (taxid:10116)]

 Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BK43 NALCN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 89/125 (71%), Positives = 107/125 (85%)

Query:     1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG 60
             ML LFEVLS KGW++VRD++  ++G  H IYIHV++FLGCMIGLTLFVGVVIAN++ENKG
Sbjct:  1105 MLALFEVLSLKGWVEVRDVIIHRVGPMHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKG 1164

Query:    61 TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINS 120
             TALLTVDQRRW DLK RLKIAQPLHLPPRPD   +RA++YD+TQ+ +FKR IA +VL  S
Sbjct:  1165 TALLTVDQRRWEDLKSRLKIAQPLHLPPRPDNDGFRAKMYDITQHPFFKRTIALLVLAQS 1224

Query:   121 MLLIV 125
             +LL V
Sbjct:  1225 VLLSV 1229

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BXR5	NALCN_MOUSE	No assigned EC number	0.712	0.8244	0.0621	yes	N/A
Q8IZF0	NALCN_HUMAN	No assigned EC number	0.712	0.8244	0.0621	yes	N/A
Q6Q760	NALCN_RAT	No assigned EC number	0.712	0.8244	0.0621	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
cd13433	54	cd13433, Na_channel_gate, Inactivation gate of the	2e-04

>gnl|CDD|240441 cd13433, Na_channel_gate, Inactivation gate of the voltage-gated sodium channel alpha subunits

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 63  LLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYD 101
            LT  Q+++ +  K+L   +P    PRP   K++  I+D
Sbjct: 17  FLTESQKKYYNAMKKLGSKKPQKPIPRP-KNKFQGFIFD 54

This region is part of the intracellular linker between domains III and IV of the alpha subunits of voltage-gated sodium channels. It is responsible for fast inactivation of the channel and essential for proper physiological function. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG2302|consensus	1956		99.92
KOG2301|consensus	1592		99.9
KOG2301|consensus	1592		99.74
KOG2302|consensus	1956		99.6
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.17
PLN03223	1634	Polycystin cation channel protein; Provisional	97.64
PF06512	239	Na_trans_assoc: Sodium ion transport-associated; I	95.21
KOG3599|consensus	798		93.88
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	93.78
TIGR00870	743	trp transient-receptor-potential calcium channel p	92.93

>KOG2302|consensus

Probab=99.92  E-value=2.5e-25  Score=184.96  Aligned_cols=128  Identities=16%  Similarity=0.297  Sum_probs=105.8

Q ss_pred             CeeeEeecccCCHHHHHHHHHHhc----------CCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccccccHHH--
Q psy12189          1 MLTLFEVLSFKGWLDVRDILKTQL----------GDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQ--   68 (131)
Q Consensus         1 ~ltlF~i~t~egW~~im~~~~da~----------~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~~l~~~q--   68 (131)
                      ++|||.++|.|||++|||++.|++          +||..+|||+|.+|.+||++|+|+||+++||.|.+++++.++..  
T Consensus      1324 lmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRr 1403 (1956)
T KOG2302|consen 1324 LMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRR 1403 (1956)
T ss_pred             HHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999997          37889999999999999999999999999999987654433222  


Q ss_pred             --HHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189         69 --RRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT  130 (131)
Q Consensus        69 --~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~  130 (131)
                        |...+..|++.  .++.++++.++...|+.+++.|.+++.+.+|+++|++|+++|++|||.|
T Consensus      1404 eEKrLrrlekkrR--~Aq~kpyyseyt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehyqq 1465 (1956)
T KOG2302|consen 1404 EEKRLRRLEKKRR--AAQRKPYYSEYTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHYQQ 1465 (1956)
T ss_pred             HHHHHHHHHHHHH--hccCCcccccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence              22222222222  3455566777889999999999999999999999999999999999987

>KOG2301|consensus

Probab=99.90  E-value=1.8e-24  Score=189.14  Aligned_cols=129  Identities=30%  Similarity=0.592  Sum_probs=118.6

Q ss_pred             CeeeEeecccCCHHHHHHHHHHhcC----------CceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccc---cccHH
Q psy12189          1 MLTLFEVLSFKGWLDVRDILKTQLG----------DAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTA---LLTVD   67 (131)
Q Consensus         1 ~ltlF~i~t~egW~~im~~~~da~~----------~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~---~l~~~   67 (131)
                      |++||+++|.|||.|+||.++|+++          ....+||+.|+++|+||.+|+|+|++++||+++++++   .+++|
T Consensus      1040 ~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~~~~~e 1119 (1592)
T KOG2301|consen 1040 MLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGTFMTEE 1119 (1592)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhhhhhHH
Confidence            5799999999999999999999986          2479999999999999999999999999999998754   45899


Q ss_pred             HHHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189         68 QRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT  130 (131)
Q Consensus        68 q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~  130 (131)
                      |+++....+.+....|++..++|. ++.|..+++++.++.|+++++..|++|++.|++++|+|
T Consensus      1120 q~~~~~~~~~l~sk~~~r~ipr~~-~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~q 1181 (1592)
T KOG2301|consen 1120 QKKRLNAAKKLGSKPPQRPIPRPR-NKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYDQ 1181 (1592)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCc-chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999998888888888776 59999999999999999999999999999999999987

>KOG2301|consensus

Probab=99.74  E-value=5.3e-19  Score=155.24  Aligned_cols=130  Identities=16%  Similarity=0.253  Sum_probs=98.5

Q ss_pred             CeeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhccc-------cccHHH-----
Q psy12189          1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTA-------LLTVDQ-----   68 (131)
Q Consensus         1 ~ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~~-------~l~~~q-----   68 (131)
                      ++|+|++.|+|||+|++|...||.|.+.++||+.++++|+|+++|+++||+...|+|++++.       +.+..|     
T Consensus       282 ~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~e~r~~~~~~~~~~~~~~~~~~~~~  361 (1592)
T KOG2301|consen  282 FLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFAEERVAFEEEWQFKEPRFQEAFEEL  361 (1592)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHHHHHHHHHhhhhhhchHHHHHHHHH
Confidence            57899999999999999999999998999999999999999999999999999999876421       111111     


Q ss_pred             ----HHHHHHHhHHhhc---------------CCCC-------------------------CCCCCCcchHHHHHhhhcc
Q psy12189         69 ----RRWCDLKKRLKIA---------------QPLH-------------------------LPPRPDAFKYRARIYDVTQ  104 (131)
Q Consensus        69 ----~~~~~~~~~~~~~---------------~p~~-------------------------~~~~~~~~~~r~~~~~~~~  104 (131)
                          .+|...-......               +|..                         ....|.+.++|..++++++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~  441 (1592)
T KOG2301|consen  362 LEKYEDGIFLAEADGSVESGPKSKLFSVDSLEDVNSRVELLSAVSYKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVF  441 (1592)
T ss_pred             HHHHHHHHHHHHHhhhhccccchhhhhhhhhhhhhhhhhhhhhhcccCchHhHhhccceeeeccchHHHHHHHHHHHhhh
Confidence                1121110000000               0000                         0112334578899999999


Q ss_pred             chhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189        105 NLWFKRLIAAVVLINSMLLIVSLAPT  130 (131)
Q Consensus       105 ~~~f~~~i~~~I~~N~i~m~~~~~~~  130 (131)
                      ++.+..++++++.+|++.|++|||++
T Consensus       442 ~~~~~~~i~i~i~lnt~~~a~eh~~~  467 (1592)
T KOG2301|consen  442 DPFVILFITICIALNTLFMAMEHYEM  467 (1592)
T ss_pred             cceehhhhHHHHhhcccEEEEEEeCC
Confidence            99999999999999999999999987

>KOG2302|consensus

Probab=99.60  E-value=7.1e-16  Score=129.37  Aligned_cols=59  Identities=24%  Similarity=0.537  Sum_probs=55.5

Q ss_pred             eeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189          2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG   60 (131)
Q Consensus         2 ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~   60 (131)
                      +.+||+.|+|||+||||-.|||..-++.+|||+.|++|+||++||.+-||...|++.|+
T Consensus       340 iaifqvitlegwvdimyyvmdahsfynfiyfilliivgsffminKOGvviatqfsetkq  398 (1956)
T KOG2302|consen  340 IAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQ  398 (1956)
T ss_pred             hhhheeeeehhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence            46899999999999999999999999999999999999999999999999999997653

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.17  E-value=2.7e-07  Score=64.51  Aligned_cols=50  Identities=24%  Similarity=0.406  Sum_probs=45.4

Q ss_pred             eeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHH
Q psy12189          2 LTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVV   51 (131)
Q Consensus         2 ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi   51 (131)
                      .++|++.|+|||.|+++..++..++...+|++.++++++++++|+++|++
T Consensus       151 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  151 YWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             HHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            45678899999999999998777788899999999999999999999986

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PLN03223 Polycystin cation channel protein; Provisional

Probab=97.64  E-value=8e-05  Score=65.87  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             eeeEeecccCCHH--HHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189          2 LTLFEVLSFKGWL--DVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG   60 (131)
Q Consensus         2 ltlF~i~t~egW~--~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~   60 (131)
                      .|+|++.+++.+.  +.+....+....+..+||++|+++..|+++|||+|+|.+.|++.++
T Consensus      1367 ~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~ 1427 (1634)
T PLN03223       1367 NSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKA 1427 (1634)
T ss_pred             HHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5788888887652  1111111112345789999999999999999999999999998764

>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated

Probab=95.21  E-value=0.0031  Score=46.51  Aligned_cols=25  Identities=20%  Similarity=0.600  Sum_probs=22.8

Q ss_pred             cchHHHHHhhhccchhhHHHHHHHH
Q psy12189         92 AFKYRARIYDVTQNLWFKRLIAAVV  116 (131)
Q Consensus        92 ~~~~r~~~~~~~~~~~f~~~i~~~I  116 (131)
                      +..+|+.||++|.|+|||.||+++|
T Consensus       215 W~~~R~~c~~iVeh~~FEtfIifmI  239 (239)
T PF06512_consen  215 WWNLRKTCYRIVEHKWFETFIIFMI  239 (239)
T ss_pred             HHHHHhhheeeecccchhheeeeeC
Confidence            4688999999999999999999876

Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex

>KOG3599|consensus

Probab=93.88  E-value=0.14  Score=44.23  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=30.5

Q ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189         28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG   60 (131)
Q Consensus        28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~   60 (131)
                      ..+||.+++++.+|.++|||+|+|.+.|++.++
T Consensus       652 G~~~~~~~v~~v~~illnmF~aiI~~~~~evk~  684 (798)
T KOG3599|consen  652 GPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA  684 (798)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence            478999999999999999999999999998764

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=93.78  E-value=0.068  Score=42.65  Aligned_cols=30  Identities=27%  Similarity=0.611  Sum_probs=27.7

Q ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhhchh
Q psy12189         28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSE   57 (131)
Q Consensus        28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~   57 (131)
                      ..+||+.|+++..++++|+|+|++.+.|++
T Consensus       395 g~l~~~~~~~~~~~illNl~iaIi~~~y~~  424 (425)
T PF08016_consen  395 GPLFFFSFMFLVFFILLNLFIAIINDSYEE  424 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            578999999999999999999999999975

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=92.93  E-value=0.21  Score=42.58  Aligned_cols=34  Identities=9%  Similarity=0.213  Sum_probs=30.1

Q ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhhchhhhcc
Q psy12189         28 HVIYIHVYIFLGCMIGLTLFVGVVIANYSENKGT   61 (131)
Q Consensus        28 ~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~~   61 (131)
                      ..+.|++|.++.+.+++||+||++.+.|++.+++
T Consensus       588 ~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~  621 (743)
T TIGR00870       588 GLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADD  621 (743)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            4678999999999999999999999999977644

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	3e-05
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	1e-04
1byy_A	53	Protein (sodium channel alpha-subunit); membrane p	4e-04

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 9/57 (15%), Positives = 24/57 (42%)

Query: 1   MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSE 57
             TLF+V++ + W         ++     ++   +IF+   + + L V + +   + 
Sbjct: 185 FYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 1   MLTLFEVLSFKGWLDV-RDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENK 59
           ++TLF+VL+   W  V   + +        +Y   +I +  +  L L + +++    + K
Sbjct: 170 LITLFQVLTLSSWETVMLPMQEI--YWWSWVYFFSFIIICSITILNLVIAILVDVVIQKK 227

>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 Length = 53

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 62  ALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYD 101
             +T +Q+++ +  K+L   +P    PRP A K++  ++D
Sbjct: 15  IFMTEEQKKYYNAMKKLGSKKPQKPIPRP-ANKFQGMVFD 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
4f4l_A	112	ION transport protein; alpha helical membrane prot	99.68
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.46
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.95
1byy_A	53	Protein (sodium channel alpha-subunit); membrane p	98.26
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.5
4djc_B	35	Sodium channel protein type 5 subunit alpha; EF-ha	97.38
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	95.8
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	95.11
2kav_A	129	Sodium channel protein type 2 subunit alpha; volta	93.5
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	93.04

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}

Probab=99.68  E-value=4e-19  Score=116.57  Aligned_cols=60  Identities=20%  Similarity=0.393  Sum_probs=48.7

Q ss_pred             CeeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189          1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG   60 (131)
Q Consensus         1 ~ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~   60 (131)
                      ++|+||++|+|||.++|++.+.+.+|++++||++|+++|+|+++|||+||++++|++.++
T Consensus        43 ~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~  102 (112)
T 4f4l_A           43 LYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKE  102 (112)
T ss_dssp             HHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC---------
T ss_pred             HHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999888888999999999999999999999999999999987654

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.46  E-value=1.3e-14  Score=105.08  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=53.2

Q ss_pred             CeeeEeecccCCHHHHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy12189          1 MLTLFEVLSFKGWLDVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENK   59 (131)
Q Consensus         1 ~ltlF~i~t~egW~~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~   59 (131)
                      ++++|++.|+|||.|+|++++++ +|++.+||++|+++|+++++|||+|++++||++++
T Consensus       170 ~~~lf~~~t~~~w~~i~~~~~~~-~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~  227 (229)
T 4dxw_A          170 LITLFQVLTLSSWETVMLPMQEI-YWWSWVYFFSFIIICSITILNLVIAILVDVVIQKK  227 (229)
T ss_dssp             HHHHHHHHTTSSTHHHHHHHHTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCCHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36889999999999999999985 46788999999999999999999999999998764

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.95  E-value=6.2e-11  Score=88.16  Aligned_cols=58  Identities=17%  Similarity=0.346  Sum_probs=49.1

Q ss_pred             eeeEeecccCCHH-HHHHHHHHhcCCceeehhhHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy12189          2 LTLFEVLSFKGWL-DVRDILKTQLGDAHVIYIHVYIFLGCMIGLTLFVGVVIANYSENKG   60 (131)
Q Consensus         2 ltlF~i~t~egW~-~im~~~~da~~~~~~lyfi~~i~ig~ff~lnlfiavi~~~f~~~~~   60 (131)
                      .++|++.|.+||. |+||+..+. ||+...||++++++++++++|+++|++.++|++..+
T Consensus       186 ~~~~~~~T~~g~~~di~~p~~~~-~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~  244 (285)
T 3rvy_A          186 YTLFQVMTLESWSMGIVRPLMEV-YPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ  244 (285)
T ss_dssp             HHHHHHHTTTTCCCCCHHHHHTT-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHc-CChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999 999998764 788889999999999999999999999999987653

>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1

Probab=98.26  E-value=2.9e-07  Score=52.05  Aligned_cols=48  Identities=25%  Similarity=0.559  Sum_probs=18.2

Q ss_pred             hhchhhhc-----cccccHHHHHHHHHHhHHhhcCCCCCCCCCCcchHHHHHhh
Q psy12189         53 ANYSENKG-----TALLTVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARIYD  101 (131)
Q Consensus        53 ~~f~~~~~-----~~~l~~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~  101 (131)
                      |||++.++     ...||++|++|++..+.+...+|.+..++|. ++++..+|+
T Consensus         1 dnFn~~k~k~gg~~~fmT~~Qkk~y~amkkl~~~kP~k~i~rP~-nk~q~~v~d   53 (53)
T 1byy_A            1 DNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPA-NKFQGMVFD   53 (53)
T ss_dssp             ------------CCSCCCHHHHHHHHHHHTSCC---------------------
T ss_pred             CcHHHHHHHhcCCccccCHHHHHHHHHHHHHhccCCCCCCCCCc-hHHHHHhcC
Confidence            46765532     3578999999999999999999999998886 588888764

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.50  E-value=6.3e-05  Score=55.52  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=34.4

Q ss_pred             chHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189         93 FKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT  130 (131)
Q Consensus        93 ~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~  130 (131)
                      +++|+.++++++|++|+.+++++|++|++.++++++++
T Consensus        17 ~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~~~   54 (285)
T 3rvy_A           17 SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKT   54 (285)
T ss_dssp             --CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             hHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            46899999999999999999999999999999998873

>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}

Probab=97.38  E-value=9.4e-05  Score=38.03  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=28.7

Q ss_pred             cHHHHHHHHHHhHHhhcCCCCCCCCCCcchHHHHH
Q psy12189         65 TVDQRRWCDLKKRLKIAQPLHLPPRPDAFKYRARI   99 (131)
Q Consensus        65 ~~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~   99 (131)
                      |++|+.|++..+.+...+|.+.+++|.+ +++..+
T Consensus         1 t~~Qkk~y~amkKl~~kkp~K~iprP~n-k~q~~~   34 (35)
T 4djc_B            1 SNAQKKYYNAMKKLGSKKPQKPIPRPLN-KYQGFI   34 (35)
T ss_pred             CHhHHHHHHHHHHHcccCCCCCcCCCCC-ccceee
Confidence            6899999999999999999999998874 766543

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=95.80  E-value=0.016  Score=46.36  Aligned_cols=38  Identities=11%  Similarity=0.207  Sum_probs=34.5

Q ss_pred             cchHHHHHhhhccc-------hhhHHHHHHHHHHHHhHhhhhcCC
Q psy12189         92 AFKYRARIYDVTQN-------LWFKRLIAAVVLINSMLLIVSLAP  129 (131)
Q Consensus        92 ~~~~r~~~~~~~~~-------~~f~~~i~~~I~~N~i~m~~~~~~  129 (131)
                      .+++|+.+|.++.+       +.|+.+++++|++|++++++|+++
T Consensus       161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p  205 (514)
T 2r9r_B          161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP  205 (514)
T ss_dssp             SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            36899999999987       689999999999999999999875

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=95.11  E-value=0.022  Score=38.20  Aligned_cols=38  Identities=13%  Similarity=0.104  Sum_probs=34.9

Q ss_pred             chHHHHHhhhccchhhHHHHHHHHHHHHhHhhhhcCCC
Q psy12189         93 FKYRARIYDVTQNLWFKRLIAAVVLINSMLLIVSLAPT  130 (131)
Q Consensus        93 ~~~r~~~~~~~~~~~f~~~i~~~I~~N~i~m~~~~~~~  130 (131)
                      +.+|+.++++++++.|+.++.++|++|++.+.+|++++
T Consensus         8 ~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~   45 (147)
T 2kyh_A            8 GGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQ   45 (147)
T ss_dssp             SHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHh
Confidence            57999999999999999999999999999999987654

>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A

Probab=93.50  E-value=0.039  Score=36.35  Aligned_cols=27  Identities=15%  Similarity=-0.021  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHhhchhhhcc--ccccHHH
Q psy12189         42 IGLTLFVGVVIANYSENKGT--ALLTVDQ   68 (131)
Q Consensus        42 f~lnlfiavi~~~f~~~~~~--~~l~~~q   68 (131)
                      -++|||||||++||+...+.  ..+++++
T Consensus        13 ~~LNLfIAVIlenF~~~~~~~~~~l~~~d   41 (129)
T 2kav_A           13 GLVPRGSHMASENFSVATEESAEPLSEDD   41 (129)
T ss_dssp             -----------CCSCCTTSSCSCSSCHHH
T ss_pred             chhheeeeeeeccHHHHHHhhccCCCHHH
Confidence            47999999999999875432  2355554

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=93.04  E-value=0.011  Score=47.27  Aligned_cols=30  Identities=13%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             eehhhHHHHHHHHHHHHHHHHHHHhhchhh
Q psy12189         29 VIYIHVYIFLGCMIGLTLFVGVVIANYSEN   58 (131)
Q Consensus        29 ~lyfi~~i~ig~ff~lnlfiavi~~~f~~~   58 (131)
                      .-+|++++++++++++|+++|++.++|++.
T Consensus       402 gr~f~~~~~l~G~~~l~l~iavI~~~f~~~  431 (514)
T 2r9r_B          402 GKIVGSLCAIAGVLTIALPVPVIVSNFNYF  431 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888888999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00