Psyllid ID: psy12192


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--
MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLEDKTKDKQAEKDTDANEGLKRTKN
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHcccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEcccccccccccccccccccccccccccccccccccccc
MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQdhledktkdkqaekdtdaneglkrtkn
MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLedktkdkqaekdtdaneglkrtkn
MLAReeieyiieeeVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLEDKTKDKQAEKDTDANEGLKRTKN
******IEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLR************************************
****EEIEYIIEEEVAKQTIRNWLEACLK***************LR************************************
MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLE***********************
MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQ**S*IA***************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLEDKTKDKQAEKDTDANEGLKRTKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query82 2.2.26 [Sep-21-2011]
Q8BXR5 1738 Sodium leak channel non-s yes N/A 0.902 0.042 0.472 8e-13
Q6Q760 1738 Sodium leak channel non-s yes N/A 0.902 0.042 0.472 2e-12
Q8IZF0 1738 Sodium leak channel non-s yes N/A 0.902 0.042 0.472 2e-12
>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein OS=Mus musculus GN=Nalcn PE=1 SV=2 Back     alignment and function desciption
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 48/74 (64%)

Query: 1    MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLED 60
            +LARE++EY IEEEVAKQTIR WL+ CLK+IRA  +Q  S+I  LR + E    +     
Sbjct: 1553 LLAREQLEYTIEEEVAKQTIRMWLKKCLKRIRAKQQQSCSIIHSLRESQEQERSRFLNPP 1612

Query: 61   KTKDKQAEKDTDAN 74
              +  Q  +D++AN
Sbjct: 1613 SIETTQPSEDSNAN 1626




Voltage-independent, cation-nonselective channel which is permeable to sodium, potassium and calcium ions. Responsible for the background sodium ion leak current in neurons and controls neuronal excitability. Activated either by neuropeptides substance P or neurotensin. Required for normal respiratory rhythm and neonatal survival.
Mus musculus (taxid: 10090)
>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS=Rattus norvegicus GN=Nalcn PE=2 SV=1 Back     alignment and function description
>sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein OS=Homo sapiens GN=NALCN PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query82
328722338 1682 PREDICTED: sodium leak channel non-selec 0.975 0.047 0.536 1e-16
328788957 2991 PREDICTED: sodium leak channel non-selec 0.951 0.026 0.625 1e-14
270002327 1743 hypothetical protein TcasGA2_TC001338 [T 0.963 0.045 0.621 5e-14
350424274 3146 PREDICTED: sodium leak channel non-selec 0.780 0.020 0.718 9e-14
340723232 3140 PREDICTED: sodium leak channel non-selec 0.780 0.020 0.718 9e-14
405974227 834 Sodium leak channel non-selective protei 0.585 0.057 0.72 4e-13
189234946 1741 PREDICTED: similar to voltage-gated ion 0.951 0.044 0.609 5e-12
383858955 3134 PREDICTED: sodium leak channel non-selec 0.914 0.023 0.618 5e-12
166233263 1738 RecName: Full=Sodium leak channel non-se 0.902 0.042 0.472 3e-11
123173782 1739 sodium leak channel non-selective protei 0.902 0.042 0.48 3e-11
>gi|328722338|ref|XP_001942755.2| PREDICTED: sodium leak channel non-selective protein-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 60/82 (73%), Gaps = 2/82 (2%)

Query: 1    MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLED 60
            ++ARE+ E  I+EEVAKQTIRNWLE CL+K+RA N+QQ SL+AGLRATNEM+ ++D  E 
Sbjct: 1506 LVAREDFEVNIQEEVAKQTIRNWLEGCLRKMRAANRQQGSLLAGLRATNEMM-LRDFEEK 1564

Query: 61   KTKDKQAE-KDTDANEGLKRTK 81
            +  + + E ++ D      RTK
Sbjct: 1565 QAANNEKENEEKDLKSDTNRTK 1586




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788957|ref|XP_397384.3| PREDICTED: sodium leak channel non-selective protein [Apis mellifera] Back     alignment and taxonomy information
>gi|270002327|gb|EEZ98774.1| hypothetical protein TcasGA2_TC001338 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|350424274|ref|XP_003493742.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340723232|ref|XP_003399996.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|405974227|gb|EKC38887.1| Sodium leak channel non-selective protein [Crassostrea gigas] Back     alignment and taxonomy information
>gi|189234946|ref|XP_001812120.1| PREDICTED: similar to voltage-gated ion channel [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383858955|ref|XP_003704964.1| PREDICTED: sodium leak channel non-selective protein-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|166233263|sp|Q8BXR5.2|NALCN_MOUSE RecName: Full=Sodium leak channel non-selective protein; AltName: Full=Voltage gated channel-like protein 1 Back     alignment and taxonomy information
>gi|123173782|ref|NP_796367.3| sodium leak channel non-selective protein [Mus musculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query82
FB|FBgn0002917 2232 na "narrow abdomen" [Drosophil 0.743 0.027 0.587 2.1e-09
UNIPROTKB|F1LMW5 1472 Nalcn "Sodium leak channel non 0.890 0.049 0.386 1.2e-05
UNIPROTKB|Q8IZF0 1738 NALCN "Sodium leak channel non 0.890 0.042 0.386 1.4e-05
MGI|MGI:2444306 1738 Nalcn "sodium leak channel, no 0.902 0.042 0.378 1.4e-05
RGD|628710 1738 Nalcn "sodium leak channel, no 0.890 0.042 0.386 1.4e-05
UNIPROTKB|Q6Q760 1738 Nalcn "Sodium leak channel non 0.890 0.042 0.386 1.4e-05
UNIPROTKB|E2QZ17 1738 NALCN "Uncharacterized protein 0.890 0.042 0.373 6.1e-05
UNIPROTKB|F6XK54 1768 NALCN "Uncharacterized protein 0.890 0.041 0.373 6.2e-05
UNIPROTKB|J9P4A2 1776 NALCN "Uncharacterized protein 0.890 0.041 0.373 6.2e-05
ZFIN|ZDB-GENE-050410-121742 nalcn "sodium leak channel, no 0.609 0.028 0.46 0.00013
FB|FBgn0002917 na "narrow abdomen" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 154 (59.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 37/63 (58%), Positives = 41/63 (65%)

Query:     1 MLARXXXXXXXXXXVAKQTIRNWLEACLKKIRATN-KQQTSLIAGLRATNEMLHMQDHL- 58
             +LAR          VAK TIR WLE CLKKIRA N  QQ SLIAGLRATNE   M+ ++ 
Sbjct:  1888 LLAREEFEYLVEEEVAKMTIRTWLEGCLKKIRAQNASQQNSLIAGLRATNEQPVMRPNIQ 1947

Query:    59 EDK 61
             EDK
Sbjct:  1948 EDK 1950




GO:0005245 "voltage-gated calcium channel activity" evidence=ISS
GO:0005261 "cation channel activity" evidence=IMP
GO:0007623 "circadian rhythm" evidence=IMP
GO:0008344 "adult locomotory behavior" evidence=IMP
GO:0006811 "ion transport" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0042752 "regulation of circadian rhythm" evidence=IMP
GO:0005216 "ion channel activity" evidence=IMP
GO:0043025 "neuronal cell body" evidence=IDA
GO:0043679 "axon terminus" evidence=IDA
GO:0072347 "response to anesthetic" evidence=IMP
GO:0048512 "circadian behavior" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
GO:0050975 "sensory perception of touch" evidence=IMP
UNIPROTKB|F1LMW5 Nalcn "Sodium leak channel non-selective protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IZF0 NALCN "Sodium leak channel non-selective protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2444306 Nalcn "sodium leak channel, non-selective" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|628710 Nalcn "sodium leak channel, non-selective" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Q760 Nalcn "Sodium leak channel non-selective protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ17 NALCN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XK54 NALCN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P4A2 NALCN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050410-12 nalcn "sodium leak channel, non-selective" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 82
KOG2301|consensus1592 96.14
>KOG2301|consensus Back     alignment and domain information
Probab=96.14  E-value=0.0027  Score=58.74  Aligned_cols=62  Identities=11%  Similarity=0.061  Sum_probs=46.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcccc
Q psy12192          1 MLAREEIEYIIEEEVAKQTIRNWLEACLKKIRATNKQQTSLIAGLRATNEMLHMQDHLEDKTKDKQAEK   69 (82)
Q Consensus         1 Ll~REelEy~IeEEVAkqTIr~WLe~CLkr~r~~~kqq~~li~~lr~~~~q~~~~~~~~~~~~~~~~~~   69 (82)
                      ++++|++++.|+++||++||++ +.+|++..+.     ...|....+.....++..+..+ .+.+...+
T Consensus      1498 ~~q~e~~~~~~~~~i~~~~i~~-~l~~l~~~~~-----a~~i~~~y~~~~~~~~~~~~~~-~~~~~~~~ 1559 (1592)
T KOG2301|consen 1498 ELQEEEFLASIPSKISYEPITT-TLKRLQEPLS-----ATIIQRAYRGYLLRDSDKRSSK-DERDGDFR 1559 (1592)
T ss_pred             HHHHHHHHhhcchhhccchHHH-HHHhhccchh-----hHHHHHHHHHHHHHHHHhhccc-cccccccc
Confidence            4689999999999999999999 9999998776     4556666665555555555555 55555544




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00