Psyllid ID: psy12224
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 904 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VHE0 | 760 | Translocation protein SEC | yes | N/A | 0.672 | 0.8 | 0.422 | 1e-139 | |
| Q5R660 | 761 | Translocation protein SEC | yes | N/A | 0.676 | 0.804 | 0.410 | 1e-138 | |
| Q9UGP8 | 760 | Translocation protein SEC | yes | N/A | 0.676 | 0.805 | 0.412 | 1e-138 | |
| Q9HGN7 | 611 | Translocation protein sec | yes | N/A | 0.338 | 0.500 | 0.294 | 8e-33 | |
| P14906 | 663 | Protein translocation pro | yes | N/A | 0.310 | 0.423 | 0.271 | 2e-20 | |
| O75643 | 2136 | U5 small nuclear ribonucl | no | N/A | 0.212 | 0.089 | 0.273 | 1e-10 | |
| Q9VUV9 | 2142 | Putative U5 small nuclear | no | N/A | 0.265 | 0.112 | 0.249 | 4e-09 | |
| Q9U2G0 | 2145 | Putative U5 small nuclear | no | N/A | 0.084 | 0.035 | 0.452 | 1e-07 | |
| F1LPQ2 | 2197 | Activating signal cointeg | no | N/A | 0.101 | 0.041 | 0.340 | 1e-06 | |
| E1BNG3 | 2201 | Activating signal cointeg | no | N/A | 0.140 | 0.057 | 0.262 | 2e-06 |
| >sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1 SV=4 | Back alignment and function desciption |
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Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 279/661 (42%), Positives = 411/661 (62%), Gaps = 53/661 (8%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGPGA 72
GA+ A IKK YR SL HPDK GDE FM++ KAY ALTDEESR+N+E++GNPDGP A
Sbjct: 114 GATVAEIKKQYRLLSLKYHPDK-GGDEVMFMRIAKAYAALTDEESRKNWEEFGNPDGPQA 172
Query: 73 MSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYY 132
SFGIALP++IV+++NS+ VL +Y L FMV LP VG WWY+SIRY+GD++L+ T Y
Sbjct: 173 TSFGIALPAWIVDQKNSILVLLVYGLAFMVILPVVVGSWWYRSIRYSGDQILIRTTQIYT 232
Query: 133 AFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERP 192
F T +M +KR++M+L + EFD ++N + RP+D I +PQLIR+I ++ K E P
Sbjct: 233 YFVYKTRNMDMKRLIMVLAGASEFDPQYNKDSTSRPTDNILIPQLIREIGSINLKKNEPP 292
Query: 193 LYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYA-- 250
L YS+KAR L+ +HL+ M++ ETLE D+ +++KKCP LLQEMV I QLI++A +
Sbjct: 293 LTCPYSLKARVLLLSHLARMKI-PETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSRE 351
Query: 251 QRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRY-IKSLQQ 309
+R R + +LEN MKL M VQG+ FK+PLLQLP++ +D+L+ K+Y IK++Q
Sbjct: 352 EREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQD 411
Query: 310 FAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVT 369
+K +R S++ F+ DE+Y +++ VLG+ PYV + ++ +V+DDE + T G+++TV
Sbjct: 412 LVSLKESDRHSLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVL 471
Query: 370 CTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWM 429
L R+ M+ +F E E I EE+P NK K
Sbjct: 472 VKLTRQTMAEVF--------------EKEQSICAAEEQPTEDGQSDANKIK--------- 508
Query: 430 KNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSES-- 487
KGG ++K K KS +K + P + +K+ + V SE+
Sbjct: 509 --AKGGWQQKNKGPKKMPKSKKKKPLKKKPTTVPLPQAKQQKQKQ----ANGVVGSEAAI 562
Query: 488 -EEESDLSDVENDEVVDKKEKNEDSNNKSEESSD-------------DDDDDWEKYQTGL 533
EEE D+SD +D +++E N DS ++ E+ SD DD+ +W++ Q +
Sbjct: 563 KEEEDDISDKGSDS--EEEETNRDSQSEKEDGSDRESDREQDEKQSKDDEAEWQELQQSI 620
Query: 534 NKRDK-VLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQ 592
++++ +LE +SK +H V+ FPE+KQE+WW+YI+DRK +TL++ PYH+ L D E+V+
Sbjct: 621 QRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVE 680
Query: 593 LKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEAPEVPTEHPQWEMSGEEDEGDE 652
LKF AP PG Y ++V LR DSY+G DQ++ +KL+V EA VP HPQW+ + E DE E
Sbjct: 681 LKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAKPVPENHPQWDTAIEGDEDQE 740
Query: 653 E 653
+
Sbjct: 741 D 741
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Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane. Mus musculus (taxid: 10090) |
| >sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9HGN7|SEC63_SCHPO Translocation protein sec63 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec63 PE=1 SV=1 | Back alignment and function description |
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| >sp|P14906|SEC63_YEAST Protein translocation protein SEC63 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC63 PE=1 SV=2 | Back alignment and function description |
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| >sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 | Back alignment and function description |
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| >sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 | Back alignment and function description |
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| >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
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| >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 904 | ||||||
| 332023800 | 760 | Translocation protein SEC63-like protein | 0.713 | 0.848 | 0.618 | 0.0 | |
| 322792367 | 761 | hypothetical protein SINV_08840 [Solenop | 0.712 | 0.846 | 0.615 | 0.0 | |
| 242008885 | 753 | conserved hypothetical protein [Pediculu | 0.706 | 0.848 | 0.606 | 0.0 | |
| 307180379 | 760 | Translocation protein SEC63-like protein | 0.712 | 0.847 | 0.608 | 0.0 | |
| 383853678 | 755 | PREDICTED: translocation protein SEC63 h | 0.701 | 0.839 | 0.614 | 0.0 | |
| 193676498 | 808 | PREDICTED: translocation protein SEC63 h | 0.726 | 0.813 | 0.585 | 0.0 | |
| 345492311 | 770 | PREDICTED: translocation protein SEC63 h | 0.713 | 0.837 | 0.584 | 0.0 | |
| 307200284 | 757 | Translocation protein SEC63-like protein | 0.712 | 0.850 | 0.603 | 0.0 | |
| 350413543 | 757 | PREDICTED: translocation protein SEC63 h | 0.699 | 0.834 | 0.601 | 0.0 | |
| 340710122 | 757 | PREDICTED: translocation protein SEC63 h | 0.699 | 0.834 | 0.599 | 0.0 |
| >gi|332023800|gb|EGI64024.1| Translocation protein SEC63-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/663 (61%), Positives = 504/663 (76%), Gaps = 18/663 (2%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70
P G+S++ IKKAYRK SLILHPDKETG+EKAFMKLTKAYQALTD+E+R+N+EKYGNPDGP
Sbjct: 113 PPGSSQSEIKKAYRKLSLILHPDKETGNEKAFMKLTKAYQALTDDEARKNWEKYGNPDGP 172
Query: 71 GAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINF 130
GAMSFGIALPS+IVEKENSVWVLGLYALVFMVALPT VGMWWYKSIRYTGD+VLL T
Sbjct: 173 GAMSFGIALPSWIVEKENSVWVLGLYALVFMVALPTVVGMWWYKSIRYTGDQVLLTTTEI 232
Query: 131 YYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRE 190
YY+FF TP M+LKRV+MIL AS EF ++ N+EI+ER SD EVP LI+Q+PNLGEKN+E
Sbjct: 233 YYSFFVKTPSMSLKRVIMILAASFEFFKKRNAEIVERHSDSEEVPSLIKQLPNLGEKNKE 292
Query: 191 RPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYA 250
PL H YSIKARAL++AHLS + L ETL+ DR YIVKKCPYL+QEMV C+ Q+ILLAYA
Sbjct: 293 VPLCHLYSIKARALLHAHLSRIPLNPETLDKDRQYIVKKCPYLIQEMVACVHQVILLAYA 352
Query: 251 QRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQF 310
+RVPR+ I T+EN MKLCPM+VQG W+FKNPLLQLP++T+D+LK+F KKR IKSLQQF
Sbjct: 353 RRVPRVPTITTIENCMKLCPMVVQGFWEFKNPLLQLPHITEDNLKYFHAKKRKIKSLQQF 412
Query: 311 AQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTC 370
AQ+K EERR +++ ++D QY D++KVLGNMPY+D V+ EVIDDE T YTAGAI+TVT
Sbjct: 413 AQLKGEERRLILRNLSDSQYEDVIKVLGNMPYIDFKVRSEVIDDENPTVYTAGAIVTVTV 472
Query: 371 TLMRKPMSVLFGDDTIKVQ-FLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWM 429
+L RK M LFGDD++ Q +E +K G +EE E+ N + + +P W+
Sbjct: 473 SLTRKDMKHLFGDDSVNEQTMIEDNKAGGEAVEEASEEQN---------QSTKATKPAWL 523
Query: 430 KNKKGGKKKKFTK-NKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESE 488
K KKG KK NK + + + TV ++ KKD E ES
Sbjct: 524 KQKKGQKKSHKKGTNKKIAPAKNTQAQSQTVANNTQHSNTPNARKKDDKTE-----KESS 578
Query: 489 EESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWEKYQTGLNKRDKVLEGRSKQSH 548
+E LSDV + E + +EDS++K + S DDDD +WEK+Q ++KR++VLEGRS SH
Sbjct: 579 KEK-LSDVSDSEAESDRSDDEDSHDKKDASLDDDDTEWEKFQQRISKRERVLEGRSNLSH 637
Query: 549 SVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWPGVYTFSV 608
VHCP FP+ KQE+WW+YI DRKS+TLLT+P HIT L E++QL+FTAPRWPG+YTF+V
Sbjct: 638 EVHCPLFPDVKQEYWWVYICDRKSQTLLTTPIHITSLAQFEEIQLRFTAPRWPGLYTFTV 697
Query: 609 CLRCDSYLGFDQMQDIKLDVKEAPEVPTEHPQWEMSGEEDEGDEEMGGSDVSEFTTDEDV 668
CLR DSYLGFDQ QDIKLDVKEAPE+PTEHPQW++S EE D + + SEFTTDED+
Sbjct: 698 CLRSDSYLGFDQAQDIKLDVKEAPEIPTEHPQWDISDEETAEDVD-AADEHSEFTTDEDI 756
Query: 669 EDD 671
D+
Sbjct: 757 SDN 759
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Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322792367|gb|EFZ16351.1| hypothetical protein SINV_08840 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|242008885|ref|XP_002425227.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508955|gb|EEB12489.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|307180379|gb|EFN68405.1| Translocation protein SEC63-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|383853678|ref|XP_003702349.1| PREDICTED: translocation protein SEC63 homolog [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|193676498|ref|XP_001942990.1| PREDICTED: translocation protein SEC63 homolog isoform 1 [Acyrthosiphon pisum] gi|328705105|ref|XP_003242697.1| PREDICTED: translocation protein SEC63 homolog isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|345492311|ref|XP_001600845.2| PREDICTED: translocation protein SEC63 homolog [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|307200284|gb|EFN80552.1| Translocation protein SEC63-like protein [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|350413543|ref|XP_003490024.1| PREDICTED: translocation protein SEC63 homolog [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|340710122|ref|XP_003393645.1| PREDICTED: translocation protein SEC63 homolog [Bombus terrestris] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 904 | ||||||
| FB|FBgn0035771 | 753 | sec63 "sec63" [Drosophila mela | 0.411 | 0.494 | 0.654 | 4.2e-184 | |
| ZFIN|ZDB-GENE-040718-328 | 751 | sec63 "SEC63-like (S. cerevisi | 0.407 | 0.490 | 0.494 | 1e-126 | |
| UNIPROTKB|E1C0C3 | 759 | SEC63 "Uncharacterized protein | 0.409 | 0.487 | 0.478 | 7.1e-126 | |
| MGI|MGI:2155302 | 760 | Sec63 "SEC63-like (S. cerevisi | 0.409 | 0.486 | 0.481 | 1.2e-125 | |
| UNIPROTKB|Q9UGP8 | 760 | SEC63 "Translocation protein S | 0.409 | 0.486 | 0.478 | 1.9e-125 | |
| UNIPROTKB|E1B7B1 | 760 | SEC63 "Uncharacterized protein | 0.409 | 0.486 | 0.476 | 2.4e-125 | |
| UNIPROTKB|F1RT28 | 759 | SEC63 "Uncharacterized protein | 0.409 | 0.487 | 0.478 | 8.6e-117 | |
| RGD|1304984 | 727 | Sec63 "SEC63 homolog (S. cerev | 0.409 | 0.508 | 0.478 | 6.4e-108 | |
| WB|WBGene00001047 | 752 | dnj-29 [Caenorhabditis elegans | 0.392 | 0.472 | 0.456 | 4.5e-107 | |
| POMBASE|SPBC36B7.03 | 611 | sec63 "ER protein translocatio | 0.155 | 0.230 | 0.397 | 1.1e-37 |
| FB|FBgn0035771 sec63 "sec63" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1317 (468.7 bits), Expect = 4.2e-184, Sum P(2) = 4.2e-184
Identities = 244/373 (65%), Positives = 307/373 (82%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70
P +S+A IKKAY + S +LHPDKETGDEK+FM L+KAYQALTD+ ++ N+EKYGNPDGP
Sbjct: 113 PPTSSQAEIKKAYYRLSKVLHPDKETGDEKSFMMLSKAYQALTDDVAKENYEKYGNPDGP 172
Query: 71 GAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINF 130
GAMSFGIALPS+IVEKENSVWVLGLY LVFMVA+P+AVG+WWY+SIR++GDKVLL+T
Sbjct: 173 GAMSFGIALPSWIVEKENSVWVLGLYGLVFMVAMPSAVGVWWYRSIRFSGDKVLLDTTQM 232
Query: 131 YYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRE 190
Y+ F TPHM LKR LM+L ASLEFD+R NS++ ER SD EVP LIRQ+PNL EK +E
Sbjct: 233 YFYFIHKTPHMLLKRALMVLAASLEFDKRHNSQVQERQSDNDEVPALIRQLPNLNEKCKE 292
Query: 191 RPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYA 250
PL YSIKARA+++AHLS M L ETLE DR ++VKKCPYL+QEMV+C+ QL+++AYA
Sbjct: 293 HPLCRMYSIKARAILHAHLSRMPLNPETLERDRQFVVKKCPYLVQEMVSCVHQLVMMAYA 352
Query: 251 QRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQF 310
+RVPRL IET+EN MK+ PMI+QG+W+FK+PLLQLP++T+DHL +F+ KKR++K+LQQF
Sbjct: 353 RRVPRLPSIETIENCMKMSPMIIQGLWEFKSPLLQLPHLTEDHL-YFMNKKRHVKNLQQF 411
Query: 311 AQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTC 370
AQ+K EE R ++K ++D +Y + +KVLG MP +D ++ EVIDDE T TAGAI+TVT
Sbjct: 412 AQLKPEESRQLLKNLSDFEYENTMKVLGKMPLIDFSIRCEVIDDENTNVVTAGAIVTVTV 471
Query: 371 TLMRKPMSVLFGD 383
TL RK M LFGD
Sbjct: 472 TLERKDMKTLFGD 484
|
|
| ZFIN|ZDB-GENE-040718-328 sec63 "SEC63-like (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C0C3 SEC63 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2155302 Sec63 "SEC63-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UGP8 SEC63 "Translocation protein SEC63 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1B7B1 SEC63 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RT28 SEC63 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|1304984 Sec63 "SEC63 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00001047 dnj-29 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBC36B7.03 sec63 "ER protein translocation subcomplex subunit Sec63 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UGP8 | SEC63_HUMAN | No assigned EC number | 0.4124 | 0.6769 | 0.8052 | yes | N/A |
| Q8VHE0 | SEC63_MOUSE | No assigned EC number | 0.4220 | 0.6725 | 0.8 | yes | N/A |
| Q5R660 | SEC63_PONAB | No assigned EC number | 0.4103 | 0.6769 | 0.8042 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 904 | |||
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 3e-50 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-37 | |
| COG5407 | 610 | COG5407, SEC63, Preprotein translocase subunit Sec | 6e-28 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 6e-18 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 2e-17 | |
| pfam00226 | 63 | pfam00226, DnaJ, DnaJ domain | 7e-14 | |
| COG0484 | 371 | COG0484, DnaJ, DnaJ-class molecular chaperone with | 8e-12 | |
| cd06257 | 55 | cd06257, DnaJ, DnaJ domain or J-domain | 1e-11 | |
| smart00271 | 60 | smart00271, DnaJ, DnaJ molecular chaperone homolog | 2e-11 | |
| PRK14284 | 391 | PRK14284, PRK14284, chaperone protein DnaJ; Provis | 8e-11 | |
| PRK14297 | 380 | PRK14297, PRK14297, chaperone protein DnaJ; Provis | 1e-10 | |
| TIGR02349 | 354 | TIGR02349, DnaJ_bact, chaperone protein DnaJ | 5e-10 | |
| PRK14276 | 380 | PRK14276, PRK14276, chaperone protein DnaJ; Provis | 6e-10 | |
| PRK14292 | 371 | PRK14292, PRK14292, chaperone protein DnaJ; Provis | 6e-10 | |
| PTZ00037 | 421 | PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov | 4e-09 | |
| PRK10767 | 371 | PRK10767, PRK10767, chaperone protein DnaJ; Provis | 7e-09 | |
| PRK14280 | 376 | PRK14280, PRK14280, chaperone protein DnaJ; Provis | 2e-08 | |
| PRK14277 | 386 | PRK14277, PRK14277, chaperone protein DnaJ; Provis | 5e-08 | |
| PRK14294 | 366 | PRK14294, PRK14294, chaperone protein DnaJ; Provis | 1e-07 | |
| PRK14298 | 377 | PRK14298, PRK14298, chaperone protein DnaJ; Provis | 2e-07 | |
| PRK14283 | 378 | PRK14283, PRK14283, chaperone protein DnaJ; Provis | 3e-07 | |
| PRK14291 | 382 | PRK14291, PRK14291, chaperone protein DnaJ; Provis | 3e-07 | |
| PRK14281 | 397 | PRK14281, PRK14281, chaperone protein DnaJ; Provis | 3e-07 | |
| PRK14285 | 365 | PRK14285, PRK14285, chaperone protein DnaJ; Provis | 3e-07 | |
| PRK14278 | 378 | PRK14278, PRK14278, chaperone protein DnaJ; Provis | 5e-07 | |
| PRK14279 | 392 | PRK14279, PRK14279, chaperone protein DnaJ; Provis | 5e-07 | |
| PRK14295 | 389 | PRK14295, PRK14295, chaperone protein DnaJ; Provis | 6e-07 | |
| PRK14299 | 291 | PRK14299, PRK14299, chaperone protein DnaJ; Provis | 9e-07 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 2e-06 | |
| PRK14286 | 372 | PRK14286, PRK14286, chaperone protein DnaJ; Provis | 2e-06 | |
| PRK14289 | 386 | PRK14289, PRK14289, chaperone protein DnaJ; Provis | 2e-06 | |
| PRK14301 | 373 | PRK14301, PRK14301, chaperone protein DnaJ; Provis | 2e-06 | |
| PRK14293 | 374 | PRK14293, PRK14293, chaperone protein DnaJ; Provis | 3e-06 | |
| COG2214 | 237 | COG2214, CbpA, DnaJ-class molecular chaperone [Pos | 6e-06 | |
| PRK14288 | 369 | PRK14288, PRK14288, chaperone protein DnaJ; Provis | 2e-05 | |
| PRK14290 | 365 | PRK14290, PRK14290, chaperone protein DnaJ; Provis | 9e-05 | |
| PRK14300 | 372 | PRK14300, PRK14300, chaperone protein DnaJ; Provis | 1e-04 | |
| PRK14296 | 372 | PRK14296, PRK14296, chaperone protein DnaJ; Provis | 2e-04 | |
| PRK14287 | 371 | PRK14287, PRK14287, chaperone protein DnaJ; Provis | 2e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 3e-04 | |
| TIGR03835 | 871 | TIGR03835, termin_org_DnaJ, terminal organelle ass | 0.001 | |
| PHA03102 | 153 | PHA03102, PHA03102, Small T antigen; Reviewed | 0.001 | |
| PRK14282 | 369 | PRK14282, PRK14282, chaperone protein DnaJ; Provis | 0.001 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 0.002 | |
| pfam04931 | 784 | pfam04931, DNA_pol_phi, DNA polymerase phi | 0.003 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 0.004 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.004 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 3e-50
Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 32/268 (11%)
Query: 109 GMWWYKSIRYTGDKVLL-ETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIER 167
G+W R + TI + + P M K +L IL S EFD+
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTF--NELLKPKMTTKDLLRILSMSSEFDQ--------- 49
Query: 168 PSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIV 227
E L+ ++ E P +KA L+ AHLS ++L S LE+D +Y++
Sbjct: 50 IPVRHEEDLLLEELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVL 109
Query: 228 KKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLP 287
+ LLQ MV + L+ A N + L MI+Q +W +PLLQLP
Sbjct: 110 QNAGRLLQAMVDIALERGWLSTA------------LNALNLSQMIIQALWPTDSPLLQLP 157
Query: 288 YVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHV 347
++ ++ LK +K+ + SL+ ++++EER ++ + D + + KVL +P +++ +
Sbjct: 158 HLPEEILKR--LEKKKVLSLEDLLELEDEERGELLG-LLDAEGERVYKVLSRLPKLNIEI 214
Query: 348 QPEVIDDEATTEYTAGAIITVTCTLMRK 375
E I G +T+T L
Sbjct: 215 SLEPITRT-----VLGVEVTLTVDLTWD 237
|
Length = 312 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
| >gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
| >gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain | Back alignment and domain information |
|---|
| >gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain | Back alignment and domain information |
|---|
| >gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ | Back alignment and domain information |
|---|
| >gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
| >gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
| >gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
| >gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi | Back alignment and domain information |
|---|
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 904 | |||
| KOG4434|consensus | 520 | 100.0 | ||
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| KOG0721|consensus | 230 | 99.97 | ||
| KOG0951|consensus | 1674 | 99.89 | ||
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 99.76 | |
| KOG0713|consensus | 336 | 99.72 | ||
| KOG0952|consensus | 1230 | 99.66 | ||
| KOG0712|consensus | 337 | 99.63 | ||
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 99.59 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.58 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 99.57 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.56 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 99.53 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 99.51 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 99.51 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 99.51 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 99.5 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.5 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 99.49 | |
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 99.48 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 99.48 | |
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 99.47 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 99.47 | |
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 99.46 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 99.46 | |
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 99.46 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 99.45 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 99.45 | |
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 99.43 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 99.43 | |
| KOG0716|consensus | 279 | 99.41 | ||
| PF00226 | 64 | DnaJ: DnaJ domain; InterPro: IPR001623 The prokary | 99.4 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 99.4 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 99.4 | |
| KOG0691|consensus | 296 | 99.4 | ||
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 99.39 | |
| PTZ00341 | 1136 | Ring-infected erythrocyte surface antigen; Provisi | 99.39 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 99.38 | |
| KOG0717|consensus | 508 | 99.37 | ||
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 99.37 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 99.37 | |
| KOG0715|consensus | 288 | 99.36 | ||
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 99.35 | |
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 99.34 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 99.34 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 99.33 | |
| KOG0719|consensus | 264 | 99.32 | ||
| PHA03102 | 153 | Small T antigen; Reviewed | 99.32 | |
| KOG0718|consensus | 546 | 99.3 | ||
| cd06257 | 55 | DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho | 99.16 | |
| smart00271 | 60 | DnaJ DnaJ molecular chaperone homology domain. | 99.16 | |
| COG2214 | 237 | CbpA DnaJ-class molecular chaperone [Posttranslati | 99.15 | |
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 99.15 | |
| PRK01356 | 166 | hscB co-chaperone HscB; Provisional | 98.91 | |
| KOG0722|consensus | 329 | 98.87 | ||
| KOG0624|consensus | 504 | 98.85 | ||
| PRK00294 | 173 | hscB co-chaperone HscB; Provisional | 98.85 | |
| PRK05014 | 171 | hscB co-chaperone HscB; Provisional | 98.83 | |
| PTZ00100 | 116 | DnaJ chaperone protein; Provisional | 98.82 | |
| KOG0714|consensus | 306 | 98.78 | ||
| PRK03578 | 176 | hscB co-chaperone HscB; Provisional | 98.76 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.75 | |
| KOG0550|consensus | 486 | 98.61 | ||
| KOG0720|consensus | 490 | 98.59 | ||
| TIGR00714 | 157 | hscB Fe-S protein assembly co-chaperone HscB. This | 98.49 | |
| KOG1150|consensus | 250 | 98.21 | ||
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 98.02 | |
| KOG1789|consensus | 2235 | 97.97 | ||
| KOG0951|consensus | 1674 | 97.84 | ||
| COG5269 | 379 | ZUO1 Ribosome-associated chaperone zuotin [Transla | 97.77 | |
| PRK09430 | 267 | djlA Dna-J like membrane chaperone protein; Provis | 97.49 | |
| KOG0723|consensus | 112 | 97.23 | ||
| KOG0568|consensus | 342 | 97.01 | ||
| KOG3192|consensus | 168 | 91.39 | ||
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 87.17 | |
| KOG0431|consensus | 453 | 85.47 | ||
| PF03656 | 127 | Pam16: Pam16; InterPro: IPR005341 The Pam16 protei | 84.57 | |
| COG1076 | 174 | DjlA DnaJ-domain-containing proteins 1 [Posttransl | 82.84 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 82.84 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 80.36 |
| >KOG4434|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-114 Score=923.00 Aligned_cols=515 Identities=45% Similarity=0.773 Sum_probs=430.5
Q ss_pred hhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHHHHHHHHhc
Q psy12224 131 YYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLS 210 (904)
Q Consensus 131 Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~iLLqAHLs 210 (904)
||||++.||+|.++++|++||+|.||+++||+++..|+.++.++++|+++++.++++++++|++.+|+.|+++||+|||+
T Consensus 1 Y~YFi~kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLs 80 (520)
T KOG4434|consen 1 YYYFINRTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLS 80 (520)
T ss_pred CeeeeccCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCC
Q psy12224 211 NMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVT 290 (904)
Q Consensus 211 Ri~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~SPLLQLPhvt 290 (904)
|++|++.+|..|+.||+.+||||+++||+|++++..|+++|+-.|+|++.++.|||+|++|+|||+|.+.|||||||||+
T Consensus 81 Rmpl~~dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHit 160 (520)
T KOG4434|consen 81 RMPLESDTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHIT 160 (520)
T ss_pred cCCCChhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccc
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCcccccCceEEEEE
Q psy12224 291 DDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTC 370 (904)
Q Consensus 291 ee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~ItpGsiVTltV 370 (904)
+++++++. ++++|++++||+.|.+++|+.+|+.|++++|++||.|+++||+|.|+++++|+||+|+++||+|++|||+|
T Consensus 161 ednL~~~~-KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~V 239 (520)
T KOG4434|consen 161 EDNLQHLR-KKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKV 239 (520)
T ss_pred hHHHHHHh-hhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEE
Confidence 99999995 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccc----CCc-cccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCccccccccc
Q psy12224 371 TLMRKPMSVLF----GDD-TIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKH 445 (904)
Q Consensus 371 ~L~R~~l~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~~~~~ 445 (904)
+|+|+.|.++. ++. ..+..++..+.++..+.+.++++ ...-.+++++|+++|.|.|-+++++.- .++
T Consensus 240 tl~R~~l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~ea------aa~~~~~~vKK~kpw~K~Kpk~~kkpa--q~Q 311 (520)
T KOG4434|consen 240 TLRRSRLIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEA------AATVEEEEVKKRKPWEKNKPKQKKKPA--QGQ 311 (520)
T ss_pred EEEeccccChHhhhhhhhhhCchhhCCCcccchhccCChhhh------ccccchhhhhhcCchhhcCCCcccCcc--ccc
Confidence 99999887642 221 11111111111100000001110 011223467789999773222211111 111
Q ss_pred CCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCCChhh
Q psy12224 446 DKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDD 525 (904)
Q Consensus 446 ~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~dd~e 525 (904)
.++ +..++.+++.... ++. +++.+++++++++++.+.|+++.. ++.||.+++++.++..++|||.|
T Consensus 312 ~~q---------K~v~~~aas~at~--ka~-eeea~~~~sD~E~e~~n~Ds~dee--s~asd~~~D~e~~~~~ddddd~E 377 (520)
T KOG4434|consen 312 GQQ---------KFVKKNAASPATE--KAL-EEEAKDKGSDSEEEETNRDSQDEE--SDASDRDSDREQDEKQDDDDDAE 377 (520)
T ss_pred hhh---------hhcccccCChhhh--hhh-HHHhhhcCcchhhhhhcccccccc--cccCccccchhhccccccccHHH
Confidence 111 1111111111111 112 445667778887777777666654 34455555666688888999999
Q ss_pred HHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecceeEEEEEEEcCCCCceeE
Q psy12224 526 WEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWPGVYT 605 (904)
Q Consensus 526 we~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~~pG~y~ 605 (904)
||.||.++++|. ++|++++++|+|||||||.+|+||||+||+|+|+++||++|+||++|++.++|+|+|+||+|||.|+
T Consensus 378 We~lqa~~~kr~-~lEtKs~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Yt 456 (520)
T KOG4434|consen 378 WEELQASIQKRA-LLETKSKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYT 456 (520)
T ss_pred HHHHHHHHHHHH-hhhcccccceeeccCCCcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceE
Confidence 999999999877 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCccccceEEEEEEeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCcccccc
Q psy12224 606 FSVCLRCDSYLGFDQMQDIKLDVKEAPEVPTEHPQWEMSGEEDEGDEEMGGSDVSEFTTDEDVEDD 671 (904)
Q Consensus 606 ytv~v~SDSYlG~Dq~~dikl~V~ea~~v~~~~~e~dise~eed~~ee~~~~~es~~ttD~e~e~d 671 (904)
|+|||+||||||+||++++||+|++|++||+.||+||.++++.++-++++. =+|||||+++|++
T Consensus 457 ytv~lrSDSYmg~dq~~~lKldV~eAk~vp~~Hpqwd~~~~e~e~~~~~e~--~~Dyted~~~eEe 520 (520)
T KOG4434|consen 457 YTVFLRSDSYMGLDQIKPLKLDVHEAKPVPENHPQWDTAIEEDEDQEDSEG--FEDYTEDEEEEEE 520 (520)
T ss_pred EEEEEecccccChhhccceeeeeccCCCCCCCCcccccccccccccccccc--ccccccccccccC
Confidence 999999999999999999999999999999999999988877766655555 5899999888875
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
| >KOG0721|consensus | Back alignment and domain information |
|---|
| >KOG0951|consensus | Back alignment and domain information |
|---|
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0713|consensus | Back alignment and domain information |
|---|
| >KOG0952|consensus | Back alignment and domain information |
|---|
| >KOG0712|consensus | Back alignment and domain information |
|---|
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >KOG0716|consensus | Back alignment and domain information |
|---|
| >PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] | Back alignment and domain information |
|---|
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >KOG0691|consensus | Back alignment and domain information |
|---|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PTZ00341 Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >KOG0717|consensus | Back alignment and domain information |
|---|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >KOG0715|consensus | Back alignment and domain information |
|---|
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
| >KOG0719|consensus | Back alignment and domain information |
|---|
| >PHA03102 Small T antigen; Reviewed | Back alignment and domain information |
|---|
| >KOG0718|consensus | Back alignment and domain information |
|---|
| >cd06257 DnaJ DnaJ domain or J-domain | Back alignment and domain information |
|---|
| >smart00271 DnaJ DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
| >COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
| >PRK01356 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
| >KOG0722|consensus | Back alignment and domain information |
|---|
| >KOG0624|consensus | Back alignment and domain information |
|---|
| >PRK00294 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
| >PRK05014 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
| >PTZ00100 DnaJ chaperone protein; Provisional | Back alignment and domain information |
|---|
| >KOG0714|consensus | Back alignment and domain information |
|---|
| >PRK03578 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
| >KOG0550|consensus | Back alignment and domain information |
|---|
| >KOG0720|consensus | Back alignment and domain information |
|---|
| >TIGR00714 hscB Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
| >KOG1150|consensus | Back alignment and domain information |
|---|
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
| >KOG1789|consensus | Back alignment and domain information |
|---|
| >KOG0951|consensus | Back alignment and domain information |
|---|
| >COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK09430 djlA Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
| >KOG0723|consensus | Back alignment and domain information |
|---|
| >KOG0568|consensus | Back alignment and domain information |
|---|
| >KOG3192|consensus | Back alignment and domain information |
|---|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
| >KOG0431|consensus | Back alignment and domain information |
|---|
| >PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] | Back alignment and domain information |
|---|
| >COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 904 | ||||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 3e-12 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 4e-06 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 3e-12 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 4e-06 | ||
| 2q0z_X | 339 | Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. | 7e-08 | ||
| 2cug_A | 88 | Solution Structure Of The J Domain Of The Pseudo Dn | 7e-08 | ||
| 1hdj_A | 77 | Human Hsp40 (Hdj-1), Nmr Length = 77 | 2e-07 | ||
| 2o37_A | 92 | J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S | 3e-06 | ||
| 3im1_A | 328 | Structure Of The C-Terminal Sec63 Unit Of Yeast Brr | 3e-06 | ||
| 1xbl_A | 107 | Nmr Structure Of The J-Domain (Residues 2-76) In Th | 4e-06 | ||
| 2lgw_A | 99 | Solution Structure Of The J Domain Of Hsj1a Length | 5e-06 | ||
| 1bq0_A | 103 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 6e-06 | ||
| 2ctp_A | 78 | Solution Structure Of J-Domain From Human Dnaj Subf | 6e-06 | ||
| 3apo_A | 780 | Crystal Structure Of Full-Length Erdj5 Length = 780 | 7e-06 | ||
| 3apq_A | 210 | Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt | 1e-05 | ||
| 1bqz_A | 77 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 2e-05 | ||
| 2ej7_A | 82 | Solution Structure Of The Dnaj Domain Of The Human | 2e-05 | ||
| 2och_A | 73 | J-domain Of Dnj-12 From Caenorhabditis Elegans Leng | 3e-05 | ||
| 2dn9_A | 79 | Solution Structure Of J-Domain From The Dnaj Homolo | 4e-05 | ||
| 2yua_A | 99 | Solution Structure Of The Dnaj Domain From Human Wi | 7e-05 | ||
| 3hib_A | 318 | Crystal Structure Of The Second Sec63 Domain Of Yea | 8e-05 | ||
| 2lo1_A | 71 | Nmr Structure Of The Protein Bc008182, A Dnaj-Like | 2e-04 | ||
| 2ctr_A | 88 | Solution Structure Of J-Domain From Human Dnaj Subf | 5e-04 | ||
| 2dmx_A | 92 | Solution Structure Of The J Domain Of Dnaj Homolog | 6e-04 | ||
| 2ctw_A | 109 | Solution Structure Of J-Domain From Mouse Dnaj Subf | 9e-04 |
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
| >pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 | Back alignment and structure |
| >pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 | Back alignment and structure |
| >pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 | Back alignment and structure |
| >pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92 | Back alignment and structure |
| >pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 | Back alignment and structure |
| >pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 | Back alignment and structure |
| >pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 | Back alignment and structure |
| >pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 | Back alignment and structure |
| >pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 | Back alignment and structure |
| >pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780 | Back alignment and structure |
| >pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210 | Back alignment and structure |
| >pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 | Back alignment and structure |
| >pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 | Back alignment and structure |
| >pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 | Back alignment and structure |
| >pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 | Back alignment and structure |
| >pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99 | Back alignment and structure |
| >pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 | Back alignment and structure |
| >pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 | Back alignment and structure |
| >pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 | Back alignment and structure |
| >pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 | Back alignment and structure |
| >pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 119 bits (298), Expect = 2e-29
Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIP 182
V TI + + ++ LK +L +L ++EF+ + R D + +L +++P
Sbjct: 23 VSFFTIQSFVS--SLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKRLP 75
Query: 183 NLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCIS 242
+ E S K L+ A+ S ++L + + D I++K L+ +V +S
Sbjct: 76 L---RFPEHTSSGSVSFKVFLLLQAYFSRLELPVD-FQNDLKDILEKVVPLINVVVDILS 131
Query: 243 QLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKR 302
L M L M++QG+WD NPL Q+P+ + L+ CK+
Sbjct: 132 ANGYL-------------NATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEK--CKEI 176
Query: 303 YIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 362
++++ +++EER ++ + D Q + + + N P V+L D +
Sbjct: 177 NVETVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVELTYSLNNSDS-----LIS 230
Query: 363 GAIITVTCTLMRKPM 377
G +T L R
Sbjct: 231 GVKQKITIQLTRDVE 245
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 | Back alignment and structure |
|---|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 | Back alignment and structure |
|---|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 | Back alignment and structure |
|---|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 | Back alignment and structure |
|---|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 | Back alignment and structure |
|---|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 | Back alignment and structure |
|---|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 | Back alignment and structure |
|---|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 | Back alignment and structure |
|---|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 | Back alignment and structure |
|---|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 | Back alignment and structure |
|---|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 | Back alignment and structure |
|---|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 | Back alignment and structure |
|---|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 | Back alignment and structure |
|---|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 | Back alignment and structure |
|---|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 | Back alignment and structure |
|---|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 904 | |||
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.96 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.71 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.71 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 99.63 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 99.61 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.61 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 99.6 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 99.59 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 99.58 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 99.57 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 99.56 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 99.54 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 99.53 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 99.53 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 99.53 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 99.52 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 99.52 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 99.52 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 99.52 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 99.46 | |
| 1gh6_A | 114 | Large T antigen; tumor suppressor, oncoprotein, an | 99.43 | |
| 1faf_A | 79 | Large T antigen; J domain, HPD motif, anti-paralle | 99.43 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.42 | |
| 2l6l_A | 155 | DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, | 99.39 | |
| 2ys8_A | 90 | RAB-related GTP-binding protein RABJ; DNAJ domain, | 99.37 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 99.37 | |
| 1fpo_A | 171 | HSC20, chaperone protein HSCB; molecular chaperone | 99.32 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 99.32 | |
| 3hho_A | 174 | CO-chaperone protein HSCB homolog; structural geno | 99.3 | |
| 2qwo_B | 92 | Putative tyrosine-protein phosphatase auxilin; cha | 99.29 | |
| 1iur_A | 88 | KIAA0730 protein; DNAJ like domain, riken structur | 99.28 | |
| 2guz_A | 71 | Mitochondrial import inner membrane translocase su | 99.26 | |
| 3bvo_A | 207 | CO-chaperone protein HSCB, mitochondrial precurso; | 99.24 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 99.22 | |
| 1n4c_A | 182 | Auxilin; four helix bundle, protein binding; NMR { | 99.2 | |
| 3ag7_A | 106 | Putative uncharacterized protein F9E10.5; J-domain | 99.16 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.06 | |
| 2guz_B | 65 | Mitochondrial import inner membrane translocase su | 98.3 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.23 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 90.16 | |
| 2kz3_A | 83 | Putative uncharacterized protein RAD51L3; RAD51D, | 83.7 |
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-58 Score=506.99 Aligned_cols=309 Identities=28% Similarity=0.487 Sum_probs=261.8
Q ss_pred ccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhH
Q psy12224 122 KVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKA 201 (904)
Q Consensus 122 ~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA 201 (904)
.|.++|++.| +.+++++++..+||++||.|.||+ ++++|++|+.+|.+|.++++.... ......++.||
T Consensus 26 Yi~~~T~~~f--~~~l~~~~~~~~lL~ils~a~EF~-----~i~vR~~E~~~l~~L~~~~~~~~~----~~~~~~~~~K~ 94 (339)
T 2q0z_X 26 YINYTTIELF--SMSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPHKLN----NPKFNDPHVKT 94 (339)
T ss_dssp -------------------CCHHHHHHHHHTSGGGT-----TCCCCTTCHHHHHHHHHHSSSCCS----SCCTTCHHHHH
T ss_pred CCCHHHHHHH--HHHhcccCCHHHHHHHHhchHHHh-----cCCCCcchHHHHHHHHHhCCCccc----cCCCCCHHHHH
Confidence 4778899999 668889999999999999999999 999999999999999999876431 12234678999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCC
Q psy12224 202 RALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKN 281 (904)
Q Consensus 202 ~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~S 281 (904)
++||||||+|++++ .+|..|+.+|+++|+||++||++||+.+| | +.+++++|+|+|||+||+|++++
T Consensus 95 ~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g-------~-----~~~~~~~l~L~q~i~q~~w~~~~ 161 (339)
T 2q0z_X 95 NLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNG-------W-----LSPALAAMELAQMVTQAMWSKDS 161 (339)
T ss_dssp HHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------B-----HHHHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------C-----HHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999998 59999999999999999999999997654 3 77899999999999999999999
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCcccc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYT 361 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~It 361 (904)
||+|||||+.+.++++ .+.++.++++|++|++++++.+|+ +++.++++|.++|++||.|+|+ ++|.++ +.|+
T Consensus 162 pL~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~e~~~ll~-l~~~~~~~i~~~~~~~P~l~v~--~~v~~~---~~i~ 233 (339)
T 2q0z_X 162 YLKQLPHFTSEHIKRC--TDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYPNIELS--YEVVDK---DSIR 233 (339)
T ss_dssp GGGGSTTCCHHHHHHH--HHTTCCSHHHHHHSCHHHHHHHHC-CCHHHHHHHHHHHTTSCCEEEE--EEETTG---GGCB
T ss_pred ceecCCCCCHHHHHHH--HhcCCCCHHHHHhCCHHHHHHHHC-CCHHHHHHHHHHHHhCCcEEEE--EEEccC---cccc
Confidence 9999999999999999 556789999999999999999997 9999999999999999999997 457665 4799
Q ss_pred cCceEEEEEEEEEccCCcccCCccccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCccccc
Q psy12224 362 AGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFT 441 (904)
Q Consensus 362 pGsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~ 441 (904)
+|++++|+|+|+|..
T Consensus 234 ~~~~~~l~v~l~~~~----------------------------------------------------------------- 248 (339)
T 2q0z_X 234 SGGPVVVLVQLEREE----------------------------------------------------------------- 248 (339)
T ss_dssp TTSEEEEEEEEEECS-----------------------------------------------------------------
T ss_pred CCCcEEEEEEEEECC-----------------------------------------------------------------
Confidence 999999999999831
Q ss_pred ccccCCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCC
Q psy12224 442 KNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDD 521 (904)
Q Consensus 442 ~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (904)
+
T Consensus 249 ---------------------------------~---------------------------------------------- 249 (339)
T 2q0z_X 249 ---------------------------------E---------------------------------------------- 249 (339)
T ss_dssp ---------------------------------S----------------------------------------------
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred ChhhHHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecceeEEEEEEEcCCCC
Q psy12224 522 DDDDWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWP 601 (904)
Q Consensus 522 dd~ewe~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~~p 601 (904)
| .+.|||||||+.|.|+|||+|+|.++++|++.. ..++....+++|+|++| .|
T Consensus 250 ----~--------------------~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~--r~~l~~~~~~~l~f~~P-~~ 302 (339)
T 2q0z_X 250 ----V--------------------TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIK--RLTLQQKAKVKLDFVAP-AT 302 (339)
T ss_dssp ----C--------------------CSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEE--EECCSSEEEEEEEEECC-SS
T ss_pred ----C--------------------CCceeCCCCCCCCCCcEEEEEEECCCCEEEEEE--EEecccceEEEEEEECC-CC
Confidence 0 124999999999999999999999999999987 45677788899999999 89
Q ss_pred ceeEEEEEEEcCCCccccceEEEEEEeecCCC
Q psy12224 602 GVYTFSVCLRCDSYLGFDQMQDIKLDVKEAPE 633 (904)
Q Consensus 602 G~y~ytv~v~SDSYlG~Dq~~dikl~V~ea~~ 633 (904)
|.|+|+|+|+||||+|||++++|+|+|.+|+.
T Consensus 303 g~~~~~v~~vSD~ylG~D~~~~i~~~v~~~~~ 334 (339)
T 2q0z_X 303 GAHNYTLYFMSDAYMGCDQEYKFSVDVKEAET 334 (339)
T ss_dssp EEEEEEEEEEESSCSSCCEEEEEEEEEBCC--
T ss_pred CCeeEEEEEEcccccCcceEEEEEEEEecCcc
Confidence 99999999999999999999999999998763
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A | Back alignment and structure |
|---|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A | Back alignment and structure |
|---|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 | Back alignment and structure |
|---|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C | Back alignment and structure |
|---|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 | Back alignment and structure |
|---|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A | Back alignment and structure |
|---|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A | Back alignment and structure |
|---|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J | Back alignment and structure |
|---|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 904 | ||||
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 3e-32 | |
| d2q0zx2 | 114 | b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo | 3e-27 | |
| d1xbla_ | 75 | a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain | 3e-08 | |
| d1nz6a_ | 98 | a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T | 5e-08 | |
| d1fafa_ | 79 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 4e-07 | |
| d1wjza_ | 94 | a.2.3.1 (A:) CSL-type zinc finger-containing prote | 1e-06 | |
| d1hdja_ | 77 | a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 | 4e-05 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 9e-05 | |
| d1iura_ | 88 | a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human | 0.001 | |
| d1gh6a_ | 114 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 0.002 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (304), Expect = 3e-32
Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 143 LKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 202
++ ++ I+ + E++ I R ++ + QL +++P+ P ++ +K
Sbjct: 3 VRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPH----KLNNPKFNDPHVKTN 53
Query: 203 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETL 262
L+ AHLS MQL++E L++D I+ K L+Q V +S L+ A
Sbjct: 54 LLLQAHLSRMQLSAE-LQSDTEEILSKAIRLIQACVDVLSSNGWLSPAL----------- 101
Query: 263 ENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVV 322
M+L M+ Q MW + L QLP+ T +H+K C + ++S+ +M++EER +++
Sbjct: 102 -AAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALL 158
Query: 323 KFMNDEQYSDMLKVLGNMP 341
+ + D Q +D+ + P
Sbjct: 159 Q-LTDSQIADVARFCNRYP 176
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 | Back information, alignment and structure |
|---|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 | Back information, alignment and structure |
|---|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 | Back information, alignment and structure |
|---|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 904 | |||
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.94 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 99.7 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1gh6a_ | 114 | Large T antigen, the N-terminal J domain {Simian v | 99.56 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 99.5 | |
| d1fafa_ | 79 | Large T antigen, the N-terminal J domain {Murine p | 99.41 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 99.22 | |
| d1iura_ | 88 | Hypothetical protein KIAA0730 {Human (Homo sapiens | 99.21 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 99.18 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.42 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 87.56 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 86.6 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 85.05 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-34 Score=282.46 Aligned_cols=175 Identities=27% Similarity=0.456 Sum_probs=159.7
Q ss_pred cHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHHHHHHHHhcCCCCChhhHHH
Q psy12224 142 ALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEA 221 (904)
Q Consensus 142 t~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~iLLqAHLsRi~Lp~~dL~~ 221 (904)
.++.||++||.|.||+ ++++|++|+.++.+|.+.++.... .+....++.|+++||||||+|+++++ +|..
T Consensus 2 ~~k~lL~~ls~a~EF~-----~i~vR~~E~~~l~~l~~~~~~~~~----~~~~~~~~~K~~~Llqa~l~r~~l~~-sl~~ 71 (176)
T d2q0zx1 2 KVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPHKLN----NPKFNDPHVKTNLLLQAHLSRMQLSA-ELQS 71 (176)
T ss_dssp CHHHHHHHHHTSGGGT-----TCCCCTTCHHHHHHHHHHSSSCCS----SCCTTCHHHHHHHHHHHHHTTCCCCH-HHHH
T ss_pred cHHHHHHHHhCcHhhc-----cCCCCccHHHHHHHHHHhCCCCCc----ccccCCHHHHHHHHHHHHHcCCCCCH-HHHH
Confidence 4789999999999999 999999999999999999876432 23345678999999999999999965 8999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHhhhcc
Q psy12224 222 DRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKK 301 (904)
Q Consensus 222 D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~SPLLQLPhvtee~lk~l~~kk 301 (904)
|+.+|+++++||++||+|||+.. +| +.++.++|+|+|||+||+|++++||+||||++.+.++++ .+
T Consensus 72 D~~~I~~~~~Rll~al~ei~~~~-------~~-----~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl--~~ 137 (176)
T d2q0zx1 72 DTEEILSKAIRLIQACVDVLSSN-------GW-----LSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRC--TD 137 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-------TB-----HHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CC-----HHHHHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHHHH--HH
Confidence 99999999999999999999764 44 778999999999999999999999999999999999999 56
Q ss_pred cCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCC
Q psy12224 302 RYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 341 (904)
Q Consensus 302 ~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P 341 (904)
.++.++++|.+|+++++..+++ +++.++.+|+++|+.||
T Consensus 138 ~~i~sl~~l~~~~~~e~~~ll~-~~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 138 KGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYP 176 (176)
T ss_dssp TTCCSHHHHHHSCHHHHHHHHC-CCHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHhCCHHHHHHHHc-CCHHHHHHHHHHHHhCc
Confidence 7889999999999999999985 99999999999999999
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} | Back information, alignment and structure |
|---|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|