Psyllid ID: psy12253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MRIIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQEPTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK
cEEEEEEcccccHHHHHHHHHccccccEEEEEEEEcccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccEEccEEEEEEEccccEEEEEEcccccccccccccccccccccHHHHEEEEEEEc
cEEEEEEEccccHEEEEEEEEccccccEEEEEEEcccccccHHHHHHHcccccccHHHHHHcccccccccHHHHccccccccccccEEEEccccccEEEEEEEEEcccccEEEEEcccccHHHcccccccccccccccEEEEEEEEccc
mriiimkrgaPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLStlrneqeptepiyntvmnhetlgLTSAYrhrtannqepqyttwkireegevchtIDYVfysqdkfdveavldmpsgeqigrdripslrypsdhfsLVCDLTLKK
mriiimkrgaprqvAVLLVLRNKKTQEEICIATTHLKARNGALLSTlrneqeptepiyntvmNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMpsgeqigrdripslrypsdhfslvcdltlkk
MRIIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQEPTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK
**IIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTL********PIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMP********RIPSLRYPSDHFSLVCDL****
*RI*I*KRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQEPTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK
MRIIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQEPTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK
MRIIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQEPTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRIIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQEPTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query149 2.2.26 [Sep-21-2011]
Q9UK39431 Nocturnin OS=Homo sapiens yes N/A 0.899 0.310 0.422 3e-27
P79942388 Nocturnin OS=Xenopus laev N/A N/A 0.912 0.350 0.404 6e-27
O35710429 Nocturnin OS=Mus musculus yes N/A 0.912 0.317 0.411 2e-26
Q6L8Q7609 2',5'-phosphodiesterase 1 no N/A 0.919 0.224 0.264 1e-07
Q6AXQ5608 2',5'-phosphodiesterase 1 no N/A 0.919 0.225 0.259 4e-07
Q08DF7609 2',5'-phosphodiesterase 1 no N/A 0.919 0.224 0.259 5e-07
Q3TIU4608 2',5'-phosphodiesterase 1 no N/A 0.523 0.128 0.333 1e-06
>sp|Q9UK39|NOCT_HUMAN Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2 Back     alignment and function desciption
 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 90/161 (55%), Gaps = 27/161 (16%)

Query: 13  QVAVLLVLRNKKTQEEICIATTHLKARNGA----------LLSTLRN------------- 49
           QVA+   L  K++  + CIA THLKAR G           LL  L+N             
Sbjct: 264 QVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCG 323

Query: 50  --EQEPTEPIYNTVMNHETLGLTSAYRHRTANNQ-EPQYTTWKIREEGEVCHTIDYVFYS 106
               EPTE +Y    +  +L L SAY+  +A+ Q EP YTTWKIR  GE  HT+DY++YS
Sbjct: 324 DFNAEPTEEVYKHFAS-SSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYS 382

Query: 107 QDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147
           +   +V + LD+ + EQIG +R+PS  YPSDH SLVCD + 
Sbjct: 383 KHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFSF 423
Component of the circadian clock or downstream effector of clock function. Exhibits a high amplitude circadian rhythm with maximal levels in early evening. In constant darkness or constant light, the amplitude of the rhythm decreases.
Homo sapiens (taxid: 9606)
>sp|P79942|NOCT_XENLA Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1 Back     alignment and function description
>sp|O35710|NOCT_MOUSE Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3 Back     alignment and function description
>sp|Q6L8Q7|PDE12_HUMAN 2',5'-phosphodiesterase 12 OS=Homo sapiens GN=PDE12 PE=1 SV=2 Back     alignment and function description
>sp|Q6AXQ5|PDE12_RAT 2',5'-phosphodiesterase 12 OS=Rattus norvegicus GN=Pde12 PE=2 SV=1 Back     alignment and function description
>sp|Q08DF7|PDE12_BOVIN 2',5'-phosphodiesterase 12 OS=Bos taurus GN=PDE12 PE=1 SV=1 Back     alignment and function description
>sp|Q3TIU4|PDE12_MOUSE 2',5'-phosphodiesterase 12 OS=Mus musculus GN=Pde12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
119114058 413 AGAP009893-PA [Anopheles gambiae str. PE 0.986 0.355 0.518 2e-43
270003873 398 hypothetical protein TcasGA2_TC003159 [T 0.993 0.371 0.511 3e-42
189235069 397 PREDICTED: similar to nocturnin CG31299- 0.993 0.372 0.511 3e-42
332374334 410 unknown [Dendroctonus ponderosae] 0.979 0.356 0.494 2e-40
312384628 499 hypothetical protein AND_01852 [Anophele 0.986 0.294 0.441 3e-40
321468777 288 hypothetical protein DAPPUDRAFT_3216 [Da 0.979 0.506 0.497 1e-39
157115453 418 nocturnin [Aedes aegypti] gi|108876911|g 0.986 0.351 0.471 2e-39
442618543 481 curled, isoform G [Drosophila melanogast 0.979 0.303 0.457 3e-37
161078189 449 curled, isoform C [Drosophila melanogast 0.979 0.325 0.457 3e-37
161078191 642 curled, isoform D [Drosophila melanogast 0.979 0.227 0.457 4e-37
>gi|119114058|ref|XP_319013.3| AGAP009893-PA [Anopheles gambiae str. PEST] gi|116118234|gb|EAA14395.3| AGAP009893-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 114/191 (59%), Gaps = 44/191 (23%)

Query: 2   RIIIMKRGAPRQVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQ---------- 51
           R++ + R    QVA+  VLR   TQ+E C+ TTHLKAR GALLS LRNEQ          
Sbjct: 204 RVLEVWRVQSNQVAIAAVLRTLDTQQEFCVTTTHLKARKGALLSKLRNEQGKDLLYFIDG 263

Query: 52  ---------------EPTEPIYNTVMNHETLGLTSAYRHRTA------NNQ--------- 81
                          EP EPIY+TV+N++ LGL SAY    A      NNQ         
Sbjct: 264 VAENRPVILCGDFNAEPIEPIYSTVLNYKPLGLASAYSDLLAEESQDENNQNALNTVAEQ 323

Query: 82  ----EPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSD 137
               EP YTTWKIREEGEVCHTIDYVFYS+DK  V+  L  PSGE+IG DR PS +YPSD
Sbjct: 324 SAAYEPPYTTWKIREEGEVCHTIDYVFYSKDKLTVKNCLMFPSGEEIGVDRTPSFQYPSD 383

Query: 138 HFSLVCDLTLK 148
           HFSLVCD+ LK
Sbjct: 384 HFSLVCDIELK 394

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270003873|gb|EFA00321.1| hypothetical protein TcasGA2_TC003159 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189235069|ref|XP_974729.2| PREDICTED: similar to nocturnin CG31299-PE [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332374334|gb|AEE62308.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|312384628|gb|EFR29312.1| hypothetical protein AND_01852 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|321468777|gb|EFX79760.1| hypothetical protein DAPPUDRAFT_3216 [Daphnia pulex] Back     alignment and taxonomy information
>gi|157115453|ref|XP_001658213.1| nocturnin [Aedes aegypti] gi|108876911|gb|EAT41136.1| AAEL007189-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|442618543|ref|NP_731539.2| curled, isoform G [Drosophila melanogaster] gi|440217313|gb|AAF54600.3| curled, isoform G [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|161078189|ref|NP_001097745.1| curled, isoform C [Drosophila melanogaster] gi|21654879|gb|AAK85704.1| nocturin [Drosophila melanogaster] gi|158030218|gb|ABW08639.1| curled, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|161078191|ref|NP_001097746.1| curled, isoform D [Drosophila melanogaster] gi|158030219|gb|ABW08640.1| curled, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
FB|FBgn0261808642 cu "curled" [Drosophila melano 0.449 0.104 0.686 4.2e-33
ZFIN|ZDB-GENE-050208-306432 ccrn4la "CCR4 carbon catabolit 0.651 0.224 0.515 1.3e-29
UNIPROTKB|F1PFN1365 CCRN4L "Uncharacterized protei 0.651 0.265 0.494 1.2e-28
UNIPROTKB|A2VE74427 CCRN4L "Uncharacterized protei 0.651 0.227 0.505 3.8e-28
UNIPROTKB|F1NVT2371 CCRN4L "Uncharacterized protei 0.651 0.261 0.494 5.2e-28
UNIPROTKB|I3LN01427 CCRN4L "Uncharacterized protei 0.651 0.227 0.494 2.2e-27
UNIPROTKB|Q9UK39431 CCRN4L "Nocturnin" [Homo sapie 0.630 0.218 0.510 2.7e-27
MGI|MGI:109382429 Ccrn4l "CCR4 carbon catabolite 0.651 0.226 0.484 1.3e-26
UNIPROTKB|F1SGK9609 PDE12 "Uncharacterized protein 0.516 0.126 0.361 1e-10
UNIPROTKB|Q6L8Q7609 PDE12 "2',5'-phosphodiesterase 0.516 0.126 0.361 1.3e-10
FB|FBgn0261808 cu "curled" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 268 (99.4 bits), Expect = 4.2e-33, Sum P(2) = 4.2e-33
 Identities = 46/67 (68%), Positives = 55/67 (82%)

Query:    81 QEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFS 140
             +EP YTTWKIREEGE CHTIDYVFY+ D+  ++  LD P+GEQIG++R PS +YPSDHFS
Sbjct:   543 REPPYTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQIGKNRTPSFQYPSDHFS 602

Query:   141 LVCDLTL 147
             LVCD  L
Sbjct:   603 LVCDFEL 609
GO:0005811 "lipid particle" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009416 "response to light stimulus" evidence=IMP
GO:0045475 "locomotor rhythm" evidence=IMP
GO:0030014 "CCR4-NOT complex" evidence=IDA
GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP
ZFIN|ZDB-GENE-050208-306 ccrn4la "CCR4 carbon catabolite repression 4-like a (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFN1 CCRN4L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE74 CCRN4L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVT2 CCRN4L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LN01 CCRN4L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UK39 CCRN4L "Nocturnin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:109382 Ccrn4l "CCR4 carbon catabolite repression 4-like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGK9 PDE12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L8Q7 PDE12 "2',5'-phosphodiesterase 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
cd09096280 cd09096, Deadenylase_nocturnin, C-terminal deadeny 2e-55
cd09082348 cd09082, Deadenylase, C-terminal deadenylase domai 3e-22
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 2e-08
cd09097329 cd09097, Deadenylase_CCR4, C-terminal deadenylase 2e-07
PLN03144606 PLN03144, PLN03144, Carbon catabolite repressor pr 5e-05
cd10312348 cd10312, Deadenylase_CCR4b, C-terminal deadenylase 8e-04
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains Back     alignment and domain information 
 Score =  174 bits (443), Expect = 2e-55
 Identities = 79/163 (48%), Positives = 97/163 (59%), Gaps = 31/163 (19%)

Query: 13  QVAVLLVLRNKKTQEEICIATTHLKARNGALLSTLRNEQ--------------------- 51
           QVA+   LR K+T  EIC+A THLKAR G     LR+EQ                     
Sbjct: 121 QVAIACTLRCKETGREICLAVTHLKARTG--WERLRSEQGKDLLQNLQSFIEGAKIPLII 178

Query: 52  ------EPTEPIYNTVMNHETLGLTSAYRHRTANNQ-EPQYTTWKIREEGEVCHTIDYVF 104
                 EPTEP+Y T  N  +L L SAY+  +A+ Q EP YTTWKIR  GE  HT+DY+F
Sbjct: 179 CGDFNAEPTEPVYKTFSNS-SLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIF 237

Query: 105 YSQDKFDVEAVLDMPSGEQIGRDRIPSLRYPSDHFSLVCDLTL 147
           YS+D   VE +LD+P+ EQIG +R+PS  YPSDH SLVCD +L
Sbjct: 238 YSKDALSVEQLLDLPTEEQIGPNRLPSFNYPSDHLSLVCDFSL 280

This subfamily contains the C-terminal catalytic domain of the deadenylase, nocturnin, and related domains. Nocturnin is a poly(A)-specific 3' exonuclease that specifically degrades the 3' poly(A) tail of RNA in a process known as deadenylation. This nuclease activity is manganese dependent. Nocturnin is expressed in the cytoplasm of Xenopus laevis retinal photoreceptor cells in a rhythmic fashion, and it has been proposed that it participates in posttranscriptional regulation of the circadian clock or its outputs, and that the mRNA target(s) of this deadenylase are circadian clock-related. In mouse, the nocturnin gene, mNoc, is expressed in a circadian pattern in a range of tissues including retina, spleen, heart, kidney, and liver. It is highly expressed in bone-marrow stromal cells, adipocytes and hepatocytes. In mammals, nocturnin plays a role in regulating mesenchymal stem-cell lineage allocation, perhaps through regulating PPAR-gamma (peroxisome proliferator-activated receptor-gamma) nuclear translocation. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Length = 280
>gnl|CDD|197316 cd09082, Deadenylase, C-terminal deadenylase domain of CCR4, nocturnin, and related domains Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information
>gnl|CDD|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains Back     alignment and domain information
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>gnl|CDD|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 149
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 99.97
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 99.74
KOG2338|consensus495 99.68
KOG0620|consensus361 99.51
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.36
PRK11756268 exonuclease III; Provisional 99.23
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 98.89
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 98.8
PRK05421263 hypothetical protein; Provisional 98.77
PTZ00297 1452 pantothenate kinase; Provisional 98.62
KOG3873|consensus 422 98.34
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 98.06
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 97.98
PRK13911250 exodeoxyribonuclease III; Provisional 97.78
COG3021309 Uncharacterized protein conserved in bacteria [Fun 97.7
COG0708261 XthA Exonuclease III [DNA replication, recombinati 97.56
KOG2756|consensus349 97.25
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 95.46
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 95.27
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 94.26
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 92.22
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 88.99
COG2374798 Predicted extracellular nuclease [General function 84.92
KOG0566|consensus 1080 84.42
KOG1294|consensus335 83.43
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
Probab=99.97  E-value=2e-31  Score=227.63  Aligned_cols=139  Identities=30%  Similarity=0.519  Sum_probs=115.8

Q ss_pred             hhcCCCcc-----EEEEEEEeecc---------CCCEEEEEeecCCCCcHH----------HHHHHHHhc----------
Q psy12253          6 MKRGAPRQ-----VAVLLVLRNKK---------TQEEICIATTHLKARNGA----------LLSTLRNEQ----------   51 (149)
Q Consensus         6 ~w~~~~~r-----v~~~~~l~~~~---------tg~~~~v~NTHLd~~~~~----------ll~~i~~~~----------   51 (149)
                      .|+++++|     ||++++|+++.         .++.|+|+||||+|++..          |++.|++..          
T Consensus       382 ~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlc  461 (606)
T PLN03144        382 QKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAASADIPMLVC  461 (606)
T ss_pred             cchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhcCCCceEEe
Confidence            47777877     89999999983         357899999999988641          455555431          


Q ss_pred             -----CCCchhHHHHHhC------------------------CCCCchhhhhhhhc-----------------CCCCCce
Q psy12253         52 -----EPTEPIYNTVMNH------------------------ETLGLTSAYRHRTA-----------------NNQEPQY   85 (149)
Q Consensus        52 -----~P~s~~y~~l~~~------------------------~~~~l~say~~~~~-----------------~~~~p~f   85 (149)
                           +|+|++|++|+++                        ++++|.|||..+..                 .+++|.|
T Consensus       462 GDFNS~P~S~vy~lLt~G~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~f  541 (606)
T PLN03144        462 GDFNSVPGSAPHCLLATGKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLF  541 (606)
T ss_pred             ccCCCCCCChhhhhhhcCCcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCc
Confidence                 8999999999853                        24678999975421                 1469999


Q ss_pred             eeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccCCC-CCCCCCCCCCceeeEEEEEEc
Q psy12253         86 TTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGRD-RIPSLRYPSDHFSLVCDLTLK  148 (149)
Q Consensus        86 T~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~~~-~lp~~~~PSDH~pv~a~~~~~  148 (149)
                      |||+    ++|.++||||||+++.++|.+++++|+++++.+. +|||..|||||+||+|+|+|+
T Consensus       542 TNyt----~~F~gtlDYIfys~~~L~v~~vL~lp~e~~l~~~~gLPn~~~PSDHI~L~AeF~~~  601 (606)
T PLN03144        542 TNCT----RDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK  601 (606)
T ss_pred             eeec----CCcceeEEEEEEcCCCceEEeecCCCCHHHhcccCCCCCCCCCCccccEeEEEEec
Confidence            9999    8999999999999888999999999999999874 999999999999999999996

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG2338|consensus Back     alignment and domain information
>KOG0620|consensus Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>KOG3873|consensus Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2756|consensus Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>KOG0566|consensus Back     alignment and domain information
>KOG1294|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 4e-16
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 2e-15
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 2e-13
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 9e-12
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 6e-06
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 6e-04
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398 Back     alignment and structure
 Score = 72.7 bits (177), Expect = 4e-16
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 67  LGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIGR 126
             L SAY +         YT +    +G     IDY+FYS+   +VE VL     + +  
Sbjct: 307 FQLKSAYENNL-----MPYTNYTFDFKG----VIDYIFYSKTHMNVEGVLGPLDPQWLVE 357

Query: 127 DR---IPSLRYPSDHFSLVCDLTLK 148
           +     P    PSDHFSL+  L L 
Sbjct: 358 NNITGCPHPHIPSDHFSLLTQLELH 382
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 99.96
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 99.85
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.75
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.71
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.69
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.46
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.41
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.4
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.4
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.37
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.35
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.26
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 98.96
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 98.92
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 98.91
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 98.91
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 98.83
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 98.82
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 98.75
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 98.67
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 98.6
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 98.54
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 98.49
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 98.44
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 97.97
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 97.69
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 97.64
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 97.21
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 96.82
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 96.44
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 95.97
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 94.01
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
Probab=99.96  E-value=9.9e-30  Score=208.57  Aligned_cols=135  Identities=27%  Similarity=0.400  Sum_probs=106.7

Q ss_pred             ehhcCCCcc------EEEEEEEeecc-------------CCCEEEEEeecCCCCcH---H-------HHHHHHHh-----
Q psy12253          5 IMKRGAPRQ------VAVLLVLRNKK-------------TQEEICIATTHLKARNG---A-------LLSTLRNE-----   50 (149)
Q Consensus         5 ~~w~~~~~r------v~~~~~l~~~~-------------tg~~~~v~NTHLd~~~~---~-------ll~~i~~~-----   50 (149)
                      .+|++.++|      |+++++|+++.             +|+.|+|+||||+|++.   .       |+++|++.     
T Consensus       154 ~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~  233 (398)
T 3ngq_A          154 DGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKAS  233 (398)
T ss_dssp             TTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             ccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            367776555      66778899875             57899999999999752   1       45555432     


Q ss_pred             ----------c------------CCCchhHHHHHhC-----------------------------------CCCCchhhh
Q psy12253         51 ----------Q------------EPTEPIYNTVMNH-----------------------------------ETLGLTSAY   73 (149)
Q Consensus        51 ----------~------------~P~s~~y~~l~~~-----------------------------------~~~~l~say   73 (149)
                                .            +|+|++|++|+++                                   ++++|.|||
T Consensus       234 ~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~SAy  313 (398)
T 3ngq_A          234 SRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY  313 (398)
T ss_dssp             -----------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETT
T ss_pred             cccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCccccccc
Confidence                      1            8999999999843                                   135566777


Q ss_pred             hhhhcCCCCCceeeeeeccCCCeeeeeeEEEeeCCcceEEEeeeCCCccccC--C-CCCCCCCCCCCceeeEEEEEEc
Q psy12253         74 RHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDVEAVLDMPSGEQIG--R-DRIPSLRYPSDHFSLVCDLTLK  148 (149)
Q Consensus        74 ~~~~~~~~~p~fT~~~~~~~~~~~~~IDYIf~~~~~~~v~~~~~~~~~~~i~--~-~~lp~~~~PSDH~pv~a~~~~~  148 (149)
                      ..     .+|+||||+    ++|.++||||||+++.++|.+++..++.+++.  . .|+||..|||||+||+|+|+|+
T Consensus       314 ~~-----~~~~fTnyt----~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~PSDHi~l~a~f~~~  382 (398)
T 3ngq_A          314 EN-----NLMPYTNYT----FDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELH  382 (398)
T ss_dssp             TT-----TSSSCSEEC----SSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCEEEEEEEC
T ss_pred             cC-----CCCCceecc----CCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCCCcchheeEEEEEc
Confidence            62     389999999    89999999999999789999999877777664  2 5999999999999999999996
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 149
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 1e-04
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 7e-04
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 0.001
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

 Score = 38.4 bits (87), Expect = 1e-04
 Identities = 11/96 (11%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 53  PTEPIYNTVMNHETLGLTSAYRHRTANNQEPQYTTWKIREEGEVCHTIDYVFYSQDKFDV 112
                Y+ ++    +   + +  + A       +  K          +DY+F        
Sbjct: 194 YGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHARP 253

Query: 113 EAVLDMPSGEQIGRDRIPSL------RYPSDHFSLV 142
            +  +     +  +  + S       +  SDH+ +V
Sbjct: 254 HSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVV 289
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 98.98
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 98.9
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 98.67
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 98.63
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 98.48
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 98.46
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 98.45
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 98.42
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 98.35
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 98.27
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 97.66
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]

Probab=98.98  E-value=1.2e-10  Score=86.41  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             hcCCCccEEEEEEEeeccCCCEEEEEeecCCCCc
Q psy12253          7 KRGAPRQVAVLLVLRNKKTQEEICIATTHLKARN   40 (149)
Q Consensus         7 w~~~~~rv~~~~~l~~~~tg~~~~v~NTHLd~~~   40 (149)
                      ++....+.+.++.  ....|..|.|+||||.+..
T Consensus       119 ~~~~~~~~~~~~~--~~~~~~~~~v~~~Hl~~~~  150 (299)
T d2ddra1         119 PDNLSNKGFVYTK--IKKNDRFVHVIGTHLQAED  150 (299)
T ss_dssp             ---CCCCEEEEEE--EEETTEEEEEEEEECCCC-
T ss_pred             cccccceeEEEEE--EecCCeEEEEEEccccCCC
Confidence            3444556666543  4457899999999998763
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure