Psyllid ID: psy12257

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MLNAESDTGCQKFRYLLGKKVEEVSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGRVS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHcHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcccccccEEEEEccccccccccHHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccEEEEEEccccEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHcHHHHHHccccc
Coil and Loop (DISEMBL)
mlnaesdtgCQKFRYLLGKKVEEVSMLRIVKAKVALYMESlcpgchqfikhqlypVFMKYSNYiqldlipfgnarhtknsdgtwefkcqhgepecfgnLYLACATHLLQASRPKHLIRYYncmasassfsIEKDVKQVTEMGRVS
Flexible Loop (DISEMBL)
mlnaesdtgcqkfryllgkkveevSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMAsassfsiekdvKQVTEMGRVS
Low Complexity Region (SEG)
MLNAESDTGCQKFRYLLGKKVEEVSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGRVS
Disordered region (IsUnstruct)
*********CQKFRYLLGKKVEEVSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASAS******************
Disordered Region (DISOPRED)
*******TGCQKFRYLLGKKV*******IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASAS*****KDVKQVTEMGRV*
Disordered Region (DISEMBL)
********GCQKFRYLLGKKVEEVSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGRVS
Disordered Region (DISPRO)
*****SDTGCQKFRYLLGKKVEEVSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSI*KDVKQVTEM*R*S
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLNAESDTGCQKFRYLLGKKVEEVSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGRVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
A6QPN6	244	Gamma-interferon-inducibl	yes	N/A	0.475	0.282	0.457	4e-14
O17861	277	GILT-like protein F37H8.5	yes	N/A	0.544	0.285	0.428	1e-13
Q9ESY9	248	Gamma-interferon-inducibl	yes	N/A	0.489	0.286	0.444	3e-13
P13284	250	Gamma-interferon-inducibl	yes	N/A	0.496	0.288	0.438	2e-12
Q499T2	248	Gamma-interferon-inducibl	yes	N/A	0.531	0.310	0.423	2e-12
B3SP85	246	Gamma-interferon-inducibl	yes	N/A	0.517	0.304	0.434	5e-12
P34276	323	GILT-like protein C02D5.2	no	N/A	0.717	0.321	0.324	4e-07

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 34  VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
           V+LY E+LCPGC +F+  +L+P ++     + + L+P+GNA+  +N  G WEF CQHGE 
Sbjct: 58  VSLYYEALCPGCREFLIRELFPTWLMVLEILNVTLVPYGNAQE-RNVSGKWEFTCQHGER 116

Query: 94  ECFGNLYLAC 103
           EC  N   AC
Sbjct: 117 ECLLNKVEAC 126

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 31  KAKVALYMESLCPGCHQFIKHQLYP-VFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQ 89
           K  + + +E+LCP C  F+  QLYP VF  ++NY+ ++L+PFGNA+  +  DGT   KCQ
Sbjct: 75  KINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE--DGT--IKCQ 130

Query: 90  HGEPECFGNLYLACATHLLQASRP 113
           HGE EC  N +  C    +Q   P
Sbjct: 131 HGEEECSINKFEGCFIDSMQDQSP 154

Caenorhabditis elegans (taxid: 6239)

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 32  AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHG 91
            +V+LY ESLC  C  F+   L+P ++     + + L+P+GNA+  +N  GTWEF CQHG
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTWLMVMEIMNITLVPYGNAQE-RNVSGTWEFTCQHG 117

Query: 92  EPECFGNLYLAC 103
           E EC  N+  AC
Sbjct: 118 ELECRLNMVEAC 129

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 32  AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHG 91
             V LY E+LC GC  F+  +L+P ++     + + L+P+GNA+  +N  G WEFKCQHG
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQE-QNVSGRWEFKCQHG 120

Query: 92  EPECFGNLYLACA 104
           E EC  N   AC 
Sbjct: 121 EEECKFNKVEACV 133

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 26  MLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWE 85
           +L      V+LY ESLC  C  F+   L+P ++     + + L+P+GNA+  +N  GTWE
Sbjct: 53  LLSAPPVNVSLYYESLCGACRYFLVRNLFPTWLMVMEIMNITLVPYGNAQE-RNVSGTWE 111

Query: 86  FKCQHGEPECFGNLYLAC 103
           F CQHGE EC  N   AC
Sbjct: 112 FTCQHGELECKLNKVEAC 129

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 34  VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
           V LY ESLC GC  F+  +L+P ++     + + L+P+GNA+  +N  G WEF CQHGE 
Sbjct: 60  VNLYYESLCNGCRYFLVRELFPTWLMVWEILNVTLVPYGNAQE-RNVSGRWEFTCQHGEQ 118

Query: 94  ECFGNLYLACATHLLQ 109
           EC  N   AC    L+
Sbjct: 119 ECKMNKVEACLLDKLE 134

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 32  AKVALYMESLCPGCHQFIKHQLYPVF--MKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQ 89
            K+ +YME+ CP   +F + QL   +  +   N I+L++IPFG AR T+  +  +E +CQ
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 197

Query: 90  HGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTE 140
           HG  EC  N  + C     +   P   +    CM     +S+++ +K VTE
Sbjct: 198 HGPTECQINQLMNCVID--RFGFPHRYLPGVLCM--QGKYSLDEAMKCVTE 244

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
405958119	250	Gamma-interferon-inducible lysosomal thi	0.544	0.316	0.493	3e-17
405951712	251	Gamma-interferon-inducible lysosomal thi	0.544	0.314	0.506	9e-17
405951711	257	Gamma-interferon-inducible lysosomal thi	0.544	0.307	0.487	8e-16
345494199	227	PREDICTED: GILT-like protein C02D5.2-lik	0.613	0.392	0.467	2e-15
260066200	254	interferon-gamma-inducible lysosomal thi	0.517	0.295	0.493	2e-15
156366809	224	predicted protein [Nematostella vectensi	0.537	0.348	0.481	3e-15
449679841	274	PREDICTED: gamma-interferon-inducible ly	0.662	0.350	0.445	4e-15
348523229	455	PREDICTED: hypothetical protein LOC10070	0.744	0.237	0.405	5e-15
443735031	265	hypothetical protein CAPTEDRAFT_180198 [	0.586	0.320	0.453	5e-15
198437056	253	PREDICTED: similar to interferon gamma-i	0.648	0.371	0.432	7e-15

>gi|405958119|gb|EKC24277.1| Gamma-interferon-inducible lysosomal thiol reductase [Crassostrea gigas]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 50/79 (63%)

Query: 31  KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90
           K ++ LY ESLCP C  F + QL   +   S+ I L L+P+GNAR  K++ G W + CQH
Sbjct: 58  KVQLTLYFESLCPDCKNFFRSQLTKTYTALSDIINLTLVPYGNAREEKDASGKWNYTCQH 117

Query: 91  GEPECFGNLYLACATHLLQ 109
           GE EC GNL   CA HLL+
Sbjct: 118 GEDECVGNLIETCAIHLLK 136

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|405951712|gb|EKC19602.1| Gamma-interferon-inducible lysosomal thiol reductase [Crassostrea gigas]

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 48/79 (60%)

Query: 31  KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90
           K + ALY ES+CPGC  F + QL   F    + + L L+P+GNA   K S G W F CQH
Sbjct: 54  KVRFALYYESMCPGCRDFFRTQLTKTFTALKDIMDLTLVPYGNAWEKKESSGRWNFTCQH 113

Query: 91  GEPECFGNLYLACATHLLQ 109
           GE EC GNL   CA HLL+
Sbjct: 114 GEDECVGNLIETCAIHLLK 132

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|405951711|gb|EKC19601.1| Gamma-interferon-inducible lysosomal thiol reductase [Crassostrea gigas]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 31  KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKN-SDGTWEFKCQ 89
           K ++ LY ESLCP C  F + QL   +   S+ I L L+P+GNAR  K+ + G W++ CQ
Sbjct: 58  KVQLTLYFESLCPDCKNFFRSQLTKTYTALSDIINLTLVPYGNAREEKDAASGKWKYTCQ 117

Query: 90  HGEPECFGNLYLACATHLLQ 109
           HGE EC GNL   CA HLL+
Sbjct: 118 HGEDECVGNLIETCAIHLLK 137

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|345494199|ref|XP_003427243.1| PREDICTED: GILT-like protein C02D5.2-like [Nasonia vitripennis]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 34  VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
           V ++ E+LCP    FIKHQL P F K  +YI ++LIP+G A     SD  +EFKCQHGE 
Sbjct: 51  VTVFYEALCPDSRSFIKHQLKPTFDKIEDYIDVNLIPYGKAETIVTSDD-YEFKCQHGET 109

Query: 94  ECFGNLYLACATHLLQASRPKHLIRYYNCMAS 125
           EC  N+  ACA H +  SR +  +    CM S
Sbjct: 110 ECEANMIHACAIHKVLNSRRR--LELVECMIS 139

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260066200|gb|ACX30641.1| interferon-gamma-inducible lysosomal thiol reductase [Pinctada fucata]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 47/75 (62%)

Query: 35  ALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPE 94
            LY ES CP C  F + QL P + K S  + L L+P+GNAR  K+  G W+F CQHG+ E
Sbjct: 62  TLYFESNCPDCKNFFRSQLSPNYEKLSGIMNLTLVPYGNAREQKSGSGKWKFTCQHGKEE 121

Query: 95  CFGNLYLACATHLLQ 109
           C GNL   CA HL++
Sbjct: 122 CIGNLIETCAIHLMK 136

Source: Pinctada fucata

Species: Pinctada fucata

Genus: Pinctada

Family: Pteriidae

Order: Pterioida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|156366809|ref|XP_001627114.1| predicted protein [Nematostella vectensis] gi|156214014|gb|EDO35014.1| predicted protein [Nematostella vectensis]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 31  KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90
           K  +ALY ESLCPGC  FI  QLYP + K    + + L+P+GNA+  K  +  W F CQH
Sbjct: 26  KVSIALYYESLCPGCRAFISDQLYPTYQKIGEIMDITLVPYGNAQQYKYGN-KWVFSCQH 84

Query: 91  GEPECFGNLYLACATHLLQ 109
           G+ EC GN+  +CA ++LQ
Sbjct: 85  GQGECEGNIIESCAINILQ 103

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449679841|ref|XP_004209432.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Hydra magnipapillata]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 32  AKVALYMESLCPGCHQFIKHQLYPVFMKY--SNYIQLDLIPFGNARHTKNSDGTWEFKCQ 89
            K+ LY ESLCPGC  FI  QL+PVF K   +  I + L P+GNA  ++  D  W F+CQ
Sbjct: 83  VKIELYYESLCPGCRAFILSQLFPVFQKLFSTGIIDIGLYPYGNAVESQEGD-KWVFQCQ 141

Query: 90  HGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFS 130
           HGE EC  NL  AC  H+L  S P   + +  C+    S S
Sbjct: 142 HGEAECQNNLIEACVLHML--SHPSQFMPFIYCLEQNPSLS 180

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|348523229|ref|XP_003449126.1| PREDICTED: hypothetical protein LOC100708541 [Oreochromis niloticus]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 8/116 (6%)

Query: 19  KKVEEVSMLRIVKA----KVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNA 74
           K+  EV+  R  +A     V LY ESLCP C +FI  QL+P +    + + + L+P+GNA
Sbjct: 247 KQCMEVNATRPNQAVPGVSVTLYYESLCPDCREFITQQLFPTWTMLQDIMAVTLVPYGNA 306

Query: 75  RHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFS 130
           +  ++++    F CQHGEPEC GN+  AC  HL + S   H+I  Y   ASA   S
Sbjct: 307 KELRSANS--PFTCQHGEPECRGNMIEACILHLTEHSLAFHII--YCMEASADVLS 358

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443735031|gb|ELU18886.1| hypothetical protein CAPTEDRAFT_180198 [Capitella teleta]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 24  VSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGT 83
           V  +R    + ALY ESLCP C  F ++QL+P F K S+ + + L+P+GNA+     D  
Sbjct: 51  VWSVRAKPVQFALYYESLCPDCQIFFRNQLWPTFQKISSILNITLVPYGNAQQEAVGDH- 109

Query: 84  WEFKCQHGEPECFGNLYLACATHLLQ 109
           W+F CQHG  EC GN+   CA HLL+
Sbjct: 110 WKFTCQHGPNECLGNVIETCAIHLLK 135

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|198437056|ref|XP_002126795.1| PREDICTED: similar to interferon gamma-inducible protein 30 [Ciona intestinalis]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 34  VALYMESLCPGCHQFIKHQLYPVFM--KYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHG 91
           + LY ESLCPGC QFI  QLYP +M  K S  +   ++P+GNA+  + S G W + CQHG
Sbjct: 57  IELYFESLCPGCRQFITTQLYPTWMSLKESGIMAASMVPYGNAKEVQLSSGLWNYTCQHG 116

Query: 92  EPECFGNLYLACATHLLQASRPKHLIRYYNCMASASS 128
             EC GNL   C  H  +     +    Y CM  AS 
Sbjct: 117 AEECVGNLIENCIIHYSEDKFDTYFPILY-CMEDASD 152

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
UNIPROTKB|A6QPN6	244	IFI30 "Gamma-interferon-induci	0.517	0.307	0.434	4.2e-15
UNIPROTKB|F1MAU3	244	IFI30 "Gamma-interferon-induci	0.517	0.307	0.434	4.2e-15
UNIPROTKB|F1PK63	251	IFI30 "Uncharacterized protein	0.475	0.274	0.457	8.8e-15
WB|WBGene00009514	277	F37H8.5 [Caenorhabditis elegan	0.544	0.285	0.428	8.8e-15
MGI|MGI:2137648	248	Ifi30 "interferon gamma induci	0.524	0.306	0.428	2.3e-14
UNIPROTKB|P13284	250	IFI30 "Gamma-interferon-induci	0.475	0.276	0.457	4.9e-14
RGD|1310758	248	Ifi30 "interferon gamma induci	0.572	0.334	0.404	7.9e-14
UNIPROTKB|B3SP85	246	IFI30 "Gamma-interferon-induci	0.517	0.304	0.434	1e-13
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.482	0.303	0.506	9.4e-11
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.475	0.283	0.486	1.1e-10

UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 33/76 (43%), Positives = 48/76 (63%)

Query:    34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
             V+LY E+LCPGC +F+  +L+P ++     + + L+P+GNA+  +N  G WEF CQHGE 
Sbjct:    58 VSLYYEALCPGCREFLIRELFPTWLMVLEILNVTLVPYGNAQE-RNVSGKWEFTCQHGER 116

Query:    94 ECFGNLYLACATHLLQ 109
             EC  N   AC    L+
Sbjct:   117 ECLLNKVEACLLDQLE 132

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1MAU3 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 33/76 (43%), Positives = 48/76 (63%)

Query:    34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
             V+LY E+LCPGC +F+  +L+P ++     + + L+P+GNA+  +N  G WEF CQHGE 
Sbjct:    58 VSLYYEALCPGCREFLIRELFPTWLMVLEILNVTLVPYGNAQE-RNVSGKWEFTCQHGER 116

Query:    94 ECFGNLYLACATHLLQ 109
             EC  N   AC    L+
Sbjct:   117 ECLLNKVEACLLDQLE 132

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

UNIPROTKB|F1PK63 IFI30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query:    34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
             V++Y E+LCPGC  F+  +L+P ++     + + L+P+GNA H +N  G WEF CQHGE 
Sbjct:    65 VSVYYEALCPGCRAFLVRELFPTWLMVLEILNVTLVPYGNA-HEQNVSGRWEFTCQHGEQ 123

Query:    94 ECFGNLYLAC 103
             EC  N   AC
Sbjct:   124 ECKLNKVEAC 133

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

WB|WBGene00009514 F37H8.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    31 KAKVALYMESLCPGCHQFIKHQLYP-VFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQ 89
             K  + + +E+LCP C  F+  QLYP VF  ++NY+ ++L+PFGNA+  +  DGT   KCQ
Sbjct:    75 KINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE--DGT--IKCQ 130

Query:    90 HGEPECFGNLYLACATHLLQASRP 113
             HGE EC  N +  C    +Q   P
Sbjct:   131 HGEEECSINKFEGCFIDSMQDQSP 154

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2137648 Ifi30 "interferon gamma inducible protein 30" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query:    33 KVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGE 92
             +V+LY ESLC  C  F+   L+P ++     + + L+P+GNA+  +N  GTWEF CQHGE
Sbjct:    60 RVSLYYESLCGACRYFLVRDLFPTWLMVMEIMNITLVPYGNAQE-RNVSGTWEFTCQHGE 118

Query:    93 PECFGNLYLACATHLLQ 109
              EC  N+  AC    L+
Sbjct:   119 LECRLNMVEACLLDKLE 135

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IMP

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

UNIPROTKB|P13284 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/70 (45%), Positives = 44/70 (62%)

Query:    34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
             V LY E+LC GC  F+  +L+P ++     + + L+P+GNA+  +N  G WEFKCQHGE 
Sbjct:    64 VTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQE-QNVSGRWEFKCQHGEE 122

Query:    94 ECFGNLYLAC 103
             EC  N   AC
Sbjct:   123 ECKFNKVEAC 132

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0005764 "lysosome" evidence=IDA

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

GO:0060333 "interferon-gamma-mediated signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/84 (40%), Positives = 47/84 (55%)

Query:    26 MLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWE 85
             +L      V+LY ESLC  C  F+   L+P ++     + + L+P+GNA+  +N  GTWE
Sbjct:    53 LLSAPPVNVSLYYESLCGACRYFLVRNLFPTWLMVMEIMNITLVPYGNAQE-RNVSGTWE 111

Query:    86 FKCQHGEPECFGNLYLACATHLLQ 109
             F CQHGE EC  N   AC    L+
Sbjct:   112 FTCQHGELECKLNKVEACLLDKLE 135

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

UNIPROTKB|B3SP85 IFI30 "Gamma-interferon-inducible-lysosomal thiol reductase" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query:    34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEP 93
             V LY ESLC GC  F+  +L+P ++     + + L+P+GNA+  +N  G WEF CQHGE 
Sbjct:    60 VNLYYESLCNGCRYFLVRELFPTWLMVWEILNVTLVPYGNAQE-RNVSGRWEFTCQHGEQ 118

Query:    94 ECFGNLYLACATHLLQ 109
             EC  N   AC    L+
Sbjct:   119 ECKMNKVEACLLDKLE 134

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 38/75 (50%), Positives = 42/75 (56%)

Query:    31 KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI-QLDLIPFGNARHTKNSDGTWEFKCQ 89
             K K+ LY ESLCP C  FI H L  +F    + I  L LIPFGNA H  + D T    CQ
Sbjct:    36 KVKLNLYYESLCPSCQNFIVHHLGKIFNTDLHTITDLKLIPFGNA-HVSD-DLT--VTCQ 91

Query:    90 HGEPECFGNLYLACA 104
             HGE EC  N   ACA
Sbjct:    92 HGEEECKLNALEACA 106

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 37/76 (48%), Positives = 41/76 (53%)

Query:    31 KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYI--QLDLIPFGNARHTKNSDGTWEFKC 88
             K K+ LY ESLCPGC +FI   L  +F  Y  Y    L L PFGNA  + N   T    C
Sbjct:    31 KVKLNLYYESLCPGCQEFIVDDLGKIF-DYDLYTITDLKLFPFGNAELSDNLTVT----C 85

Query:    89 QHGEPECFGNLYLACA 104
             QHGE EC  N   ACA
Sbjct:    86 QHGEEECKLNALEACA 101

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	7e-22

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score = 83.5 bits (207), Expect = 7e-22
 Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 33  KVALYMESLCPGCHQFIKHQLYPVFMKY--SNYIQLDLIPFGNARHTKNSDGTWEFKCQH 90
            + LY ESLCP C +FI++QLYP +      +   L L+PFG AR     D      CQH
Sbjct: 2   NITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKAR---CVDDGSVCTCQH 58

Query: 91  GEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKD 134
           G  EC  N   AC    L     K  + +  CM   +++S    
Sbjct: 59  GPEECKLNALQACVIETLP--NQKLQLPFIRCMQGKTNYSEGFK 100

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
KOG3160|consensus	220		100.0
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.05
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	92.65
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	92.63
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	91.5
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	89.49
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	86.36
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	85.64
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	84.01
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	82.96
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	82.88
KOG2501|consensus	157		81.07

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=4.8e-41  Score=244.04  Aligned_cols=104  Identities=40%  Similarity=0.821  Sum_probs=92.2

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHH--HhccCceeEEEEeeeeceeecCCCCCcceeeeCChhhhccChHhHHHhhhhc
Q psy12257         32 AKVALYMESLCPGCHQFIKHQLYPVF--MKYSNYIQLDLIPFGNARHTKNSDGTWEFKCQHGEPECFGNLYLACATHLLQ  109 (145)
Q Consensus        32 V~V~vyyESlCPd~~~Fi~~qL~P~~--~~l~d~idl~lvPfG~a~~~~~~~g~~~f~CQHG~~EC~gN~~~aCal~~~~  109 (145)
                      |+|+||||||||||++||++||+|+|  ++++++|||+|||||||+...  +|. .|+|||||.||+||++|+|+++++ 
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~--~~~-~~~CqHG~~EC~gN~~q~C~l~~~-   76 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSS--SGN-EFTCQHGPDECYGNKLQACALKHL-   76 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEec--CCc-eeecCCcHHHHHcCHHHHhHHHhc-
Confidence            78999999999999999999999976  789999999999999999885  443 899999999999999999999999 


Q ss_pred             CCCccccceeeeeccccCCCCchhhHHHHhhhcC
Q psy12257        110 ASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGR  143 (145)
Q Consensus       110 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~c~~~~~  143 (145)
                       ++...+|+||+||+++.+++.+..   |++..+
T Consensus        77 -~~~~~~~~~i~Cm~~~~~~~~~~~---Ca~~~~  106 (108)
T PF03227_consen   77 -PDTNAALPFIACMESSQDFPKAIK---CAKKYG  106 (108)
T ss_pred             -CChhhhcCEEEEEcCCCCCchhhh---hHHhcC
Confidence             577888999999999966543333   887765

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>KOG3160|consensus

Probab=100.00  E-value=4.4e-37  Score=248.61  Aligned_cols=131  Identities=33%  Similarity=0.560  Sum_probs=106.5

Q ss_pred             cccccceeeeecccchh-h--hh-hhcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHh-ccCceeEEEEeeeeceeecCC
Q psy12257          6 SDTGCQKFRYLLGKKVE-E--VS-MLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMK-YSNYIQLDLIPFGNARHTKNS   80 (145)
Q Consensus         6 ~~~~~~~~~~l~~~~~~-~--~~-~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~-l~d~idl~lvPfG~a~~~~~~   80 (145)
                      +-+.+..|++++..... .  ++ ....+||+|+||||||||||++||++||+|+|.. +.+++||++||||||+...  
T Consensus        11 ~~~~~~~F~c~~~~~~~~~~~~~~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~--   88 (220)
T KOG3160|consen   11 SLAILSFFVCLLLFSFLLGILVAKGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRN--   88 (220)
T ss_pred             cchhhheeeecchHhhhhhheeeccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeec--
Confidence            45677888877654443 1  22 2345699999999999999999999999999987 7999999999999999985  


Q ss_pred             CCCcceeeeCChhhhccChHhHHHhhhhcCCCccccceeeeeccccCCCCchhhHHHHhhhcCC
Q psy12257         81 DGTWEFKCQHGEPECFGNLYLACATHLLQASRPKHLIRYYNCMASASSFSIEKDVKQVTEMGRV  144 (145)
Q Consensus        81 ~g~~~f~CQHG~~EC~gN~~~aCal~~~~~~~~~~~l~fI~Cm~~~~~~~~~~~~~~c~~~~~l  144 (145)
                      ++ +.|+||||+.||.+|++|||+|+++  +++.++++||.||++..   .-..+.+|.+..|+
T Consensus        89 ~~-~~~~CqHG~~EC~lN~LqaCvI~~l--~~~~~~l~~i~C~~~~~---~~~~~~~C~~~~~~  146 (220)
T KOG3160|consen   89 DG-GTFTCQHGEEECKLNKLQACVIDTL--PDQSDQLPFIRCIQGKQ---KLSEAEDCLEKYGL  146 (220)
T ss_pred             Cc-eEEEecCCHHHHhhhHHHHHHHHhh--hchHhhhceehhhhccc---chhHHHHHHhhcCC
Confidence            43 8999999999999999999999999  68999999999999932   22223336665554

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.05  E-value=0.077  Score=38.84  Aligned_cols=44  Identities=20%  Similarity=0.436  Sum_probs=35.7

Q ss_pred             hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhc--cCceeEEEEee
Q psy12257         27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKY--SNYIQLDLIPF   71 (145)
Q Consensus        27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l--~d~idl~lvPf   71 (145)
                      .+..++.|.+|..=.||.|++|... |.++.+++  .+.+.+.++|+
T Consensus         9 ~~~a~~~v~~f~d~~Cp~C~~~~~~-~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen    9 NPDAPITVTEFFDFQCPHCAKFHEE-LEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             -TTTSEEEEEEE-TTSHHHHHHHHH-HHHHHHHHTTTTTEEEEEEES
T ss_pred             CCCCCeEEEEEECCCCHhHHHHHHH-HhhhhhhccCCCceEEEEEEc
Confidence            4556899999999999999999864 55888887  77899999987

...

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.65  E-value=0.19  Score=37.42  Aligned_cols=44  Identities=20%  Similarity=0.307  Sum_probs=38.4

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN   73 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~   73 (145)
                      ..+|.|..|+-=.||.|++|-. .+.+...+..+.+.|+++|+..
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~-~~~~~~~~~~~~v~~~~~~~~~   57 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEP-ILEAWVKKLPKDVKFEKVPVVF   57 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhH-HHHHHHHhCCCCceEEEcCCcc
Confidence            5789999999999999999985 5788888888899999999763

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=92.63  E-value=0.31  Score=34.96  Aligned_cols=41  Identities=10%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF   71 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf   71 (145)
                      ..++.|.+|+--.||.|++|- .+|.+.+...++ +++.++||
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~~~~-~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLA-PELEKLLKEDPD-VRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhh-HHHHHHHHHCCC-ceEEEEeC
Confidence            468899999999999999996 356565555554 56666666

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=91.50  E-value=0.44  Score=35.45  Aligned_cols=44  Identities=14%  Similarity=0.167  Sum_probs=24.9

Q ss_pred             hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      .-..++++.|+.|+-||||++++= .|..+.+ ....++++++.-.
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae-~~p~i~~~~i~rd   81 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNVP-VLAKIAE-ANPNIEVRIILRD   81 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHHH-HHHHHHH-H-TTEEEEEE-HH
T ss_pred             hcCCCcEEEEEECCCchhHHHHHH-HHHHHHH-hCCCCeEEEEEec
Confidence            345788999999999999997762 2322222 3347788888764

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=89.49  E-value=0.62  Score=30.25  Aligned_cols=41  Identities=20%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             EEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeece
Q psy12257         34 VALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNAR   75 (145)
Q Consensus        34 V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~   75 (145)
                      |.+|+--.||.|..+.. +|.+......+.++++++|+.-..
T Consensus         1 i~~f~d~~Cp~C~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~   41 (98)
T cd02972           1 IVEFFDPLCPYCYLFEP-ELEKLLYADDGGVRVVYRPFPLLG   41 (98)
T ss_pred             CeEEECCCCHhHHhhhH-HHHHHHhhcCCcEEEEEeccccCC
Confidence            46788899999999874 677766667888999999987544

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=86.36  E-value=1.7  Score=35.69  Aligned_cols=43  Identities=28%  Similarity=0.388  Sum_probs=33.2

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN   73 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~   73 (145)
                      ...|..|.||.--.||+|++|-. ++.|..+.  ..+.++++|++-
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~~--g~V~v~~ip~~~  157 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVDS--GKVQLRHILVGI  157 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHH-HHHHHhhc--CceEEEEEeccc
Confidence            34678899999999999999986 46664433  348889999864

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=85.64  E-value=3  Score=27.84  Aligned_cols=41  Identities=20%  Similarity=0.552  Sum_probs=31.3

Q ss_pred             eeEEEEEEEeCChhhHHHHHHhhHHHHHhcc--CceeEEEEeee
Q psy12257         31 KAKVALYMESLCPGCHQFIKHQLYPVFMKYS--NYIQLDLIPFG   72 (145)
Q Consensus        31 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~--d~idl~lvPfG   72 (145)
                      |+.+-.|+-+-||.|+.++. .|..++++++  +.++|-.|...
T Consensus         2 K~~ll~fwa~~c~~c~~~~~-~l~~l~~~~~~~~~v~~v~Vs~d   44 (95)
T PF13905_consen    2 KPVLLYFWASWCPPCKKELP-KLKELYKKYKKKDDVEFVFVSLD   44 (95)
T ss_dssp             SEEEEEEE-TTSHHHHHHHH-HHHHHHHHHTTTTTEEEEEEE-S
T ss_pred             CEEEEEEECCCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEeC
Confidence            67788899999999999874 6778887777  66777766664

...

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=84.01  E-value=2.6  Score=27.22  Aligned_cols=29  Identities=21%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHHHhcc
Q psy12257         32 AKVALYMESLCPGCHQFIKHQLYPVFMKYS   61 (145)
Q Consensus        32 V~V~vyyESlCPd~~~Fi~~qL~P~~~~l~   61 (145)
                      |+|.+|+-+-||.|+.... .|..+...+.
T Consensus         1 ~~v~~f~~~~C~~C~~~~~-~l~~l~~~~~   29 (82)
T TIGR00411         1 VKIELFTSPTCPYCPAAKR-VVEEVAKEMG   29 (82)
T ss_pred             CEEEEEECCCCcchHHHHH-HHHHHHHHhc
Confidence            6899999999999997643 3443333333

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=82.96  E-value=2.5  Score=32.71  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=33.2

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeeece
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGNAR   75 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~a~   75 (145)
                      ...++.|.+|.--.||.|+++.. .|.+    ..+-+.|+++||....
T Consensus        75 ~~~~~~i~~f~D~~Cp~C~~~~~-~l~~----~~~~v~v~~~~~p~~~  117 (197)
T cd03020          75 GNGKRVVYVFTDPDCPYCRKLEK-ELKP----NADGVTVRIFPVPILG  117 (197)
T ss_pred             CCCCEEEEEEECCCCccHHHHHH-HHhh----ccCceEEEEEEcCcCC
Confidence            34689999999999999999875 4544    4566888888886443

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=82.88  E-value=3.1  Score=26.18  Aligned_cols=17  Identities=18%  Similarity=0.704  Sum_probs=15.2

Q ss_pred             eEEEEEEEeCChhhHHH
Q psy12257         32 AKVALYMESLCPGCHQF   48 (145)
Q Consensus        32 V~V~vyyESlCPd~~~F   48 (145)
                      |+|.+|+-+-||.|++.
T Consensus         1 ~~v~~f~~~~C~~C~~~   17 (67)
T cd02973           1 VNIEVFVSPTCPYCPDA   17 (67)
T ss_pred             CEEEEEECCCCCCcHHH
Confidence            68999999999999765

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG2501|consensus

Probab=81.07  E-value=1.2  Score=34.84  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             eeecccchhh--hhhhcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc-eeEEEEeeeeceeecCCCCCcceeeeC
Q psy12257         14 RYLLGKKVEE--VSMLRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY-IQLDLIPFGNARHTKNSDGTWEFKCQH   90 (145)
Q Consensus        14 ~~l~~~~~~~--~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~-idl~lvPfG~a~~~~~~~g~~~f~CQH   90 (145)
                      +.|.+.+...  ++..-..||-+-.|--.-||+||.|- -.|.++|+.+.+- -.|++|-...-+...  +-...+.++|
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FT-P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~--~~~~y~~~~~   91 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFT-PILKDFYEELKDNAAPFEVVFVSSDRDEE--SLDEYMLEHH   91 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCC-chHHHHHHHHHhcCCceEEEEEecCCCHH--HHHHHHHhcC
Confidence            3455544443  33234458777777788999999986 4788899887654 244444432211111  1123567778


Q ss_pred             Chhhh
Q psy12257         91 GEPEC   95 (145)
Q Consensus        91 G~~EC   95 (145)
                      |+-=.
T Consensus        92 ~~W~~   96 (157)
T KOG2501|consen   92 GDWLA   96 (157)
T ss_pred             CCeEE
Confidence            76543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	94.79
1z6m_A	175	Conserved hypothetical protein; structural genomic	94.76
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	94.73
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	92.69
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	92.34
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	91.7
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	91.6
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	90.94
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	90.49
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	90.13
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	89.69
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	89.2
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	89.05
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	88.83
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	88.61
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	87.2
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	84.09
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	84.05
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	81.97

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=94.79  E-value=0.054  Score=39.08  Aligned_cols=43  Identities=14%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ...||.|.+|+-..||.|++|.. .|.+++.+.++ +.|.++++.
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~-~l~~l~~~~~~-v~~~~~~~p   62 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMA-EVQGLVDADPN-VRLVYREWP   62 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHHCTT-EEEEEEECC
T ss_pred             CCCCEEEEEEECCCCccHHHHHH-HHHHHHHhCCC-EEEEEEeCC
Confidence            45789999999999999999974 57777777766 677776663

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=94.76  E-value=0.063  Score=38.81  Aligned_cols=44  Identities=14%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhc--cCceeEEEEeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKY--SNYIQLDLIPFG   72 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l--~d~idl~lvPfG   72 (145)
                      ...+|.|.+|+--.||.|++|.. .|.+..+++  .+.+.|.++||.
T Consensus        25 ~~a~v~i~~f~D~~Cp~C~~~~~-~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           25 SNAPVKMIEFINVRCPYCRKWFE-ESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCcchHHHHH-HHHHHHHHHhhCCcEEEEEEeCC
Confidence            34689999999999999999975 577777766  667888888874

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=94.73  E-value=0.063  Score=39.26  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=35.3

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ..+|.|.+|+-..||.|+.|.. .|.++..++.+.+.++.+|+.
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~p~~   66 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDS-KLQAWGARQAKDVRFTLVPAV   66 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHH-HHHHHHHTSCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHhhhhH-HHHHHHHhcCCceEEEEeCcc
Confidence            4689999999999999999975 566666777777888888873

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=92.69  E-value=0.2  Score=36.76  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=34.0

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF   71 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf   71 (145)
                      ...+|.|..|+-..||.|++|.. .|..+.+++.+.+.++.+|.
T Consensus        23 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           23 QPGKIEVVELFWYGCPHCYAFEP-TIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHH-HHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCCCEEEEEECCCChhHHHhhH-HHHHHHHhCCCCeEEEEEeh
Confidence            35789999999999999999975 45445566777778887775

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=92.34  E-value=0.24  Score=36.37  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ...++.|.+|+-..||.|++|.. .|..+.+++.+.+.+..+|.-
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEP-MVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHH-HHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhH-HHHHHHHHCCCCeEEEEEecc
Confidence            45789999999999999999974 455555667777778877763

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=91.70  E-value=0.38  Score=36.74  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHH-hc--cCceeEEEEee
Q psy12257         27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFM-KY--SNYIQLDLIPF   71 (145)
Q Consensus        27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~-~l--~d~idl~lvPf   71 (145)
                      ....+|.|.+|.-=.||.|++|-. .+.|.+. ++  ...+.|.+.+|
T Consensus        12 ~~~a~vtivef~D~~Cp~C~~~~~-~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A           12 NPAAKLRLVEFVSYTCPHCSHFEI-ESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHH-HHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCCCeEEEEEECCCCHHHHHHHH-HHHHHHHHHhccCCeEEEEEEeC
Confidence            355799999999999999999985 5777776 55  45677777666

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=91.60  E-value=0.094  Score=38.46  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF   71 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf   71 (145)
                      ...+|.|.+|+-..||.|++|.. .|..+.++..+.+.++.+|.
T Consensus        20 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           20 QSGKIEVLEFFGYFCVHCHHFDP-LLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SSSSEEEEEEECTTSCCTTSSCH-HHHHHHHHSCTTEEEEEEEC
T ss_pred             CCCCcEEEEEECCCChhHHHHhH-HHHHHHHHCCCceEEEEecc
Confidence            34689999999999999999974 46666666766788888885

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=90.94  E-value=0.38  Score=35.09  Aligned_cols=44  Identities=18%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHH-Hhcc--CceeEEEEeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVF-MKYS--NYIQLDLIPFG   72 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~-~~l~--d~idl~lvPfG   72 (145)
                      ...+|.|.+|+--.||.|.+|-. .|.|.+ .++.  ..+.|.+.||.
T Consensus         9 ~~a~~~i~~f~D~~Cp~C~~~~~-~l~~~l~~~~~~~~~v~~~~~~~p   55 (186)
T 3bci_A            9 KNGKPLVVVYGDYKCPYCKELDE-KVMPKLRKNYIDNHKVEYQFVNLA   55 (186)
T ss_dssp             --CCCEEEEEECTTCHHHHHHHH-HHHHHHHHHTTTTTSSEEEEEECC
T ss_pred             CCCCeEEEEEECCCChhHHHHHH-HHHHHHHHHhccCCeEEEEEEecC
Confidence            45689999999999999999975 465655 3454  35788888874

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=90.49  E-value=0.56  Score=35.42  Aligned_cols=43  Identities=14%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHH-hcc--CceeEEEEee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFM-KYS--NYIQLDLIPF   71 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~-~l~--d~idl~lvPf   71 (145)
                      ...+|.|..|.-=.||.|++|-. .+.|.+. ++.  ..+.|.+.||
T Consensus        27 ~~a~vtvvef~D~~CP~C~~~~~-~~~~~l~~~~~~~g~v~~~~~~~   72 (202)
T 3gha_A           27 DDAPVTVVEFGDYKCPSCKVFNS-DIFPKIQKDFIDKGDVKFSFVNV   72 (202)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HTHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCCEEEEEEECCCChhHHHHHH-HhhHHHHHHhccCCeEEEEEEec
Confidence            45699999999999999999975 4666654 453  4678888776

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=90.13  E-value=0.51  Score=36.53  Aligned_cols=41  Identities=27%  Similarity=0.476  Sum_probs=32.4

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ..|+.|.+|+--.||+|++|.. +|.+..+.  +.+.|.++||+
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~-~l~~~~~~--g~v~v~~~~~p  136 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQ-QARPWVDS--GKVQLRTLLVG  136 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHH-HHHHHHHT--TSEEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHHHHHH-HHHHHHhC--CcEEEEEEECC
Confidence            4688999999999999999975 56665554  35778888885

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=89.69  E-value=0.53  Score=34.99  Aligned_cols=44  Identities=16%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      .+.+|.|..|+--.||.|++|-. .|..+.+++.+.+.|..+|..
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~~-~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLEP-VLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHH-HHHHHHTTCCTTEEEEEEECC
T ss_pred             CCCCcEEEEEECCCChhHHHHHH-HHHHHHHHCCCCeEEEEecCC
Confidence            34689999999999999999963 455555667777778878763

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=89.20  E-value=0.45  Score=35.28  Aligned_cols=43  Identities=14%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccC-ceeEEEEeeeec
Q psy12257         30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSN-YIQLDLIPFGNA   74 (145)
Q Consensus        30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d-~idl~lvPfG~a   74 (145)
                      .+++|++|+--.||.|..+  .++.+.+.++.+ -++|+++||+-.
T Consensus         6 ~~~~I~~f~D~~CP~C~~~--~~~~~~l~~~~~~~v~v~~~~~~l~   49 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWGF--APVIENIRQEYSAFLTVKIMPGGLR   49 (216)
T ss_dssp             CCCEEEEEECTTCHHHHHH--HHHHHHHHHHHTTTCEEEEEECC--
T ss_pred             cceeEEEEECCCCchhhcc--hHHHHHHHhcCCCCeEEEEeecccc
Confidence            4688999999999999933  455555554434 589999998743

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=89.05  E-value=0.71  Score=32.86  Aligned_cols=41  Identities=12%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257         30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF   71 (145)
Q Consensus        30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf   71 (145)
                      .++.|..|.-=.||.|++|- ..+.++.+++.+.+.+.++|+
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~-~~~~~l~~~~~~~~~~~~~~~   61 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFE-PIIAQLKQQLPEGAKFQKNHV   61 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHH-HHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCEEEEEECCCCHhHHHHh-HHHHHHHhhcCCceEEEEEec
Confidence            46678788888999999995 467777777877777777765

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=88.83  E-value=0.79  Score=35.47  Aligned_cols=43  Identities=19%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHH-hc--cCceeEEEEee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFM-KY--SNYIQLDLIPF   71 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~-~l--~d~idl~lvPf   71 (145)
                      ...+|.|.+|.-=.||.|++|-. .+.|.+. ++  ...+.|.+.||
T Consensus        37 ~~A~vtIvef~Dy~CP~C~~~~~-~~~~~l~~~~~~~g~V~~v~~~~   82 (226)
T 3f4s_A           37 PKAPILMIEYASLTCYHCSLFHR-NVFPKIKEKYIDTGKMLYIFRHF   82 (226)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HTHHHHHHHHTTTTSEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHH-HHHHHHHHHcccCCeEEEEEEeC
Confidence            44689999999999999999975 3555543 55  23566655555

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=88.61  E-value=0.62  Score=34.82  Aligned_cols=43  Identities=9%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhc-cCceeEEEEee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKY-SNYIQLDLIPF   71 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l-~d~idl~lvPf   71 (145)
                      ...+|.|.+|.-=.||.|++|.. .+.|.+++. .+.+.|.+.+|
T Consensus        12 g~a~vtiv~f~D~~Cp~C~~~~~-~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           12 GHGPRLFEVFLEPTCPFSVKAFF-KLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             ECCSEEEEEEECTTCHHHHHHHT-THHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHH-HHHHHHHHhCCCCEEEEEEEc
Confidence            45789999999999999999974 677776654 66677776665

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=87.20  E-value=0.98  Score=33.65  Aligned_cols=41  Identities=15%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             eEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257         32 AKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN   73 (145)
Q Consensus        32 V~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~   73 (145)
                      ++|++|+--.||.|-.+- ..|..+...+.+-++|+++||+-
T Consensus         3 ~~I~~~~D~~CP~cy~~~-~~l~~l~~~~~~~v~v~~~p~~L   43 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYK-PTIEKLKQQLPGVIQFEYVVGGL   43 (208)
T ss_dssp             EEEEEEECTTCHHHHHHH-HHHHHHHHHSCTTSEEEEEECCS
T ss_pred             eEEEEEECCCCchhhhhh-HHHHHHHHhCCCCceEEEEeccc
Confidence            689999999999999554 35656666777889999999874

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=84.09  E-value=1.1  Score=27.46  Aligned_cols=39  Identities=21%  Similarity=0.492  Sum_probs=26.5

Q ss_pred             eeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEe
Q psy12257         31 KAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIP   70 (145)
Q Consensus        31 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvP   70 (145)
                      ++.|.+||-+-||.|+++.. .|..+..++.+.+.+..+-
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~-~l~~~~~~~~~~~~~~~vd   41 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKR-VVEEVANEMPDAVEVEYIN   41 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHH-HHHHHHHHCSSSEEEEEEE
T ss_pred             ceEEEEEeCCCCCchHHHHH-HHHHHHHHcCCceEEEEEE
Confidence            57899999999999998763 3444445555445554443

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=84.05  E-value=1.2  Score=36.26  Aligned_cols=40  Identities=13%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN   73 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~   73 (145)
                      ..+..|.+|.--.||+|+++.. +|.|.+++    +++++++|+-
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~-~l~~~l~~----~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELT-KLRDHLKE----NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHH-THHHHHHH----CEEEEEECCC
T ss_pred             CCCeEEEEEECcCChhHHHHHH-HHHHHhhC----CcEEEEEeec
Confidence            4678899999999999999975 67766543    7888888763

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=81.97  E-value=2.3  Score=30.74  Aligned_cols=39  Identities=23%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ...++.|.+|.--.||+|++|-..     +.++.+ +.|.++.|.
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~-----l~~l~~-v~v~~~~~P   50 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHE-----FEKMTD-VTVYSFMMP   50 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHH-----HTTCCS-EEEEEEECC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHH-----HhhcCc-eEEEEEEcc
Confidence            456899999999999999987642     355543 556655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	92.98
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	92.09
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	89.24
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	84.54
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	82.8
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	82.79
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	82.58
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	81.66

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.085  Score=37.18  Aligned_cols=43  Identities=26%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             cCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeeee
Q psy12257         28 RIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFGN   73 (145)
Q Consensus        28 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG~   73 (145)
                      ...++.|.+|.-=.||.|++|.. +|.+..+.  ..+.+.++||+-
T Consensus        34 ~~a~~tv~vF~D~~CP~C~~~~~-~l~~l~~~--~~v~v~~~~~~~   76 (169)
T d1v58a1          34 KDAPVIVYVFADPFCPYCKQFWQ-QARPWVDS--GKVQLRTLLVGV   76 (169)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHT--TSEEEEEEECCC
T ss_pred             CCCCEEEEEEECCCCcchHHHHH-HHHHHHhc--cceeEEEEeccc
Confidence            45689999999999999999985 56665543  358889999874

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.09  E-value=0.11  Score=35.52  Aligned_cols=45  Identities=11%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCc--eeEEEEeee
Q psy12257         27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNY--IQLDLIPFG   72 (145)
Q Consensus        27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~--idl~lvPfG   72 (145)
                      ....+|.|..|..=.||.|++|-. .+.++..+..+.  +.+.++|+.
T Consensus        21 ~~~a~v~I~ef~d~~Cp~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   67 (172)
T d1z6ma1          21 ESNAPVKMIEFINVRCPYCRKWFE-ESEELLAQSVKSGKVERIIKLFD   67 (172)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHH-HHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCCCEEEEEEECCCCHhHHHHHH-HHhhhhhhhccccceeeeecccc
Confidence            445689999999999999999964 466666665443  444555554

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=89.24  E-value=0.31  Score=33.06  Aligned_cols=42  Identities=12%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPF   71 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPf   71 (145)
                      ..++.|..|.-=.||.|++|- ..+.+...++.+.+.+.++|+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~-~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFE-PIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHH-HHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhh-hhhhhHhhhcccccceeEEec
Confidence            456778888888999999985 567778888877777766655

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.54  E-value=0.69  Score=31.88  Aligned_cols=42  Identities=21%  Similarity=0.272  Sum_probs=28.6

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         29 IVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ..++.|-+++++-||||++.+- -|..++...+ .++|.+|-.+
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P-~l~~l~~~~~-~~~~~~i~~d   94 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLA-ALDFAQRLQP-NIELAIISKG   94 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHH-HHHHHHHHCT-TEEEEEECHH
T ss_pred             cCCeEEEEEEeCcCccHHHHHH-HHHHHHHHCC-CCcEEEEECc
Confidence            5789999999999999998753 2333333333 4667666433

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.80  E-value=0.93  Score=30.88  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             hcCCeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         27 LRIVKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        27 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      ....|+.|.+|.-=.||+|++|-. +|.+..+   ...++.+++|.
T Consensus        23 ~~~ak~~I~~FsD~~CPyC~~~~~-~l~~l~~---~~~~v~~~~~~   64 (150)
T d1t3ba1          23 AKNEKHVVTVFMDITCHYCHLLHQ-QLKEYND---LGITVRYLAFP   64 (150)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHT-THHHHHH---TTEEEEEEECC
T ss_pred             CCCCCEEEEEEECCCCHHHHHHhH-HHHHHhc---cCceEEEEEec
Confidence            456789999999999999999863 4544433   35677777764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.79  E-value=0.62  Score=28.29  Aligned_cols=20  Identities=30%  Similarity=0.733  Sum_probs=17.7

Q ss_pred             CeeEEEEEEEeCChhhHHHH
Q psy12257         30 VKAKVALYMESLCPGCHQFI   49 (145)
Q Consensus        30 ~kV~V~vyyESlCPd~~~Fi   49 (145)
                      .||.|.+||-+-||.|+.+.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~   21 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAK   21 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHH
T ss_pred             CceEEEEEECCCCcChHhhh
Confidence            58999999999999998664

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=82.58  E-value=1.1  Score=29.95  Aligned_cols=42  Identities=19%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CeeEEEEEEEeCChhhHHHHHHhhHHHHHhccCceeEEEEeee
Q psy12257         30 VKAKVALYMESLCPGCHQFIKHQLYPVFMKYSNYIQLDLIPFG   72 (145)
Q Consensus        30 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~l~d~idl~lvPfG   72 (145)
                      .|+-|--|+-+-||.|++++- +|..+++++.+-.+|+++...
T Consensus        28 GK~vvl~FwatwC~~C~~~~p-~l~~l~~~~~~~~~~~vi~is   69 (144)
T d1o73a_          28 GKTVFLYFSASWCPPCRGFTP-VLAEFYEKHHVAKNFEVVLIS   69 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHH-HHHHHHHHHTTTTTEEEEEEE
T ss_pred             CCEEEEEeChhhCccchhhhH-HHHHHHHHHhhccCeEEEEEe
Confidence            577777888999999999986 588888887655567777665

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.66  E-value=1.2  Score=28.08  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=17.1

Q ss_pred             CCeeEEEEEEEeCChhhHHH
Q psy12257         29 IVKAKVALYMESLCPGCHQF   48 (145)
Q Consensus        29 ~~kV~V~vyyESlCPd~~~F   48 (145)
                      ..++.|.+|+..-||+|+.+
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~   33 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDV   33 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHH
T ss_pred             CCCeEEEEEECCCCcchHHH
Confidence            46788999999999999855