Psyllid ID: psy12308


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
FLKLKLTTAKTQSLPCYGLTEPPLWSSQGRRLRKKTPPQNPTCDTTRTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGASPQPHPTSPHPNANFGMTTEEIHQSNSFKRLMHMVLE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEcccccccccccccccHHccccccccccEEcccccHHHHHHHHHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccEEcccHHHHHHHHHcc
ccEEEEEcccccccccccccccccccccccEcccccccccccccccccccccccccccHHHHHHHcccccccccccccccEccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEcccHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccEccccccccccccccccccccccccccccccEEEEcccHHHHHHHHcc
flklklttaktqslpcygltepplwssqgrrlrkktppqnptcdttrtapvvncrtvskltcrlffqpyrttplvlpgakvkkenpptesylrhhpnpmmraspghyefgnselsyKQKVADSVlnrvipdsqsnpnrhvvnrpyntpiglyseqNIVDSINHhykktvvydpakseTFKALQEEelvgghvqeipqpvqpkvfappktytkgaspqphptsphpnanfgmtteeiHQSNSFKRLMHMVLE
flklklttaktqslpcygltepplwssqgrrlrkktppqnptcdttrtapvvncRTVSKLTcrlffqpyrttplvlpgakvkkenpptesylrhhpnpmMRASPGHYEFGNSELSYKQKVADSVLNRvipdsqsnpnrhvvnrpYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGhvqeipqpvqPKVFAPPKTYTKGASPQPHPTSPHPNANFGMTTEEIHQSNSFKRLMHMVLE
FLKLKLTTAKTQSLPCYGLTEPPLWSSQGRRLRKKTPPQNPTCDTTRTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGASPQPHPTSPHPNANFGMTTEEIHQSNSFKRLMHMVLE
***************CYGL***************************RTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPG*************************************************************VVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAK**TF************************************************************************
*******TAKTQSLPCYGLT*******************************************LFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPN*****************SY**KVA************************NTPIGLYSEQNIVDS***********************************************************************TTEEIHQSNSFKRLMHMVL*
FLKLKLTTAKTQSLPCYGLTEPPLWSS*****************TTRTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIPQPVQPKVFAPPKT************SPHPNANFGMTTEEIHQSNSFKRLMHMVLE
FLKLKLTTAKTQSLPCYGLTEPPLWSSQGRRLRKKTPPQNPTCDTTRTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELV******************P*T***********TSPHPNANFGMTTEEIHQSNSFKRLMHMVLE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FLKLKLTTAKTQSLPCYGLTEPPLWSSQGRRLRKKTPPQNPTCDTTRTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGASPQPHPTSPHPNANFGMTTEEIHQSNSFKRLMHMVLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
242247181236 ZM-domain protein [Acyrthosiphon pisum] 0.733 0.779 0.534 7e-50
307178144 368 PDZ and LIM domain protein 3 [Camponotus 0.697 0.475 0.560 1e-44
350420105 355 PREDICTED: PDZ and LIM domain protein 3- 0.709 0.501 0.530 8e-42
340720195 355 PREDICTED: PDZ and LIM domain protein 3- 0.709 0.501 0.530 1e-41
242008889219 conserved hypothetical protein [Pediculu 0.780 0.894 0.490 2e-41
307213065 407 PDZ and LIM domain protein 2 [Harpegnath 0.705 0.434 0.533 2e-41
380017774 355 PREDICTED: PDZ and LIM domain protein 3- 0.713 0.504 0.523 7e-41
383862929 355 PREDICTED: PDZ and LIM domain protein 3- 0.709 0.501 0.530 8e-41
110760326 356 PREDICTED: PDZ and LIM domain protein 3 0.709 0.5 0.520 1e-40
289577260216 Z band alternatively spliced PDZ-motif p 0.784 0.912 0.495 7e-40
>gi|242247181|ref|NP_001156347.1| ZM-domain protein [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 116/217 (53%), Positives = 142/217 (65%), Gaps = 33/217 (15%)

Query: 65  FFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSV 124
              PYRT PLVLPGAKVK++ P T SYLRHHPNPMMRA P H++     L  KQKV D+V
Sbjct: 19  LLWPYRTNPLVLPGAKVKRDPPKTVSYLRHHPNPMMRAHPSHHDQPMDTL-MKQKVTDTV 77

Query: 125 LNRVIP-DSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHH-----YKKTVVYDPAKSET 178
           L R+   +++S P R VV++ +N+PIGLYSE+NI +SI        +KKTV YDPAKSET
Sbjct: 78  LQRISSEEAKSRPGRQVVHKQFNSPIGLYSEENIANSIKSQTGYTPHKKTVQYDPAKSET 137

Query: 179 FKALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGA------------------------ 214
           +KA+QE E    H QEI +PVQPKVF P +   K A                        
Sbjct: 138 YKAIQESEHGDFHAQEISKPVQPKVFTPVQGTVKKAPISNGHGHQNHNKLSAPYHPNPGR 197

Query: 215 -SPQPHPTSPHPNANFGMTTEEIHQSNSFKRLMHMVL 250
            SPQPHPT+PHPNAN+ ++T+EIHQS SFKRLMHMV+
Sbjct: 198 VSPQPHPTAPHPNANY-VSTDEIHQSGSFKRLMHMVM 233




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178144|gb|EFN66952.1| PDZ and LIM domain protein 3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350420105|ref|XP_003492400.1| PREDICTED: PDZ and LIM domain protein 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340720195|ref|XP_003398527.1| PREDICTED: PDZ and LIM domain protein 3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|242008889|ref|XP_002425229.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508957|gb|EEB12491.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307213065|gb|EFN88596.1| PDZ and LIM domain protein 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380017774|ref|XP_003692820.1| PREDICTED: PDZ and LIM domain protein 3-like [Apis florea] Back     alignment and taxonomy information
>gi|383862929|ref|XP_003706935.1| PREDICTED: PDZ and LIM domain protein 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|110760326|ref|XP_001122389.1| PREDICTED: PDZ and LIM domain protein 3 [Apis mellifera] Back     alignment and taxonomy information
>gi|289577260|ref|NP_001166188.1| Z band alternatively spliced PDZ-motif protein 66 isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
FB|FBgn0035917430 Zasp66 "Z band alternatively s 0.418 0.244 0.517 6.9e-24
FB|FBgn0035917 Zasp66 "Z band alternatively spliced PDZ-motif protein 66" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 276 (102.2 bits), Expect = 6.9e-24, P = 6.9e-24
 Identities = 59/114 (51%), Positives = 84/114 (73%)

Query:    67 QPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLN 126
             QPYRTTPLVLPGAKVKK+ P TESYLRH+PNP +RA PGH ++ +S +  KQ+VAD++L+
Sbjct:   218 QPYRTTPLVLPGAKVKKDAPTTESYLRHYPNPAVRAHPGH-DYHDSIM--KQRVADTMLH 274

Query:   127 RVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFK 180
             +V+  S+++  R V ++ +N+PIGLYS  NI D+I    + TV +  ++S   K
Sbjct:   275 KVV-GSEADTGR-VFHKQFNSPIGLYSNNNIEDTI----RSTVPFATSESNRLK 322


GO:0007498 "mesoderm development" evidence=IEP
GO:0008157 "protein phosphatase 1 binding" evidence=IPI
GO:0030018 "Z disc" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
smart0073526 smart00735, ZM, ZASP-like motif 3e-04
>gnl|CDD|128974 smart00735, ZM, ZASP-like motif Back     alignment and domain information
 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 12/23 (52%), Positives = 19/23 (82%)

Query: 140 VVNRPYNTPIGLYSEQNIVDSIN 162
           VV++ YN+PIGLYS +NI +++ 
Sbjct: 2   VVHKQYNSPIGLYSSENIAETLQ 24


Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules. Length = 26

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 251
smart0073526 ZM ZASP-like motif. Short motif (26 amino acids) p 98.92
>smart00735 ZM ZASP-like motif Back     alignment and domain information
Probab=98.92  E-value=4e-10  Score=70.29  Aligned_cols=26  Identities=46%  Similarity=0.944  Sum_probs=24.0

Q ss_pred             ceeccccCCCcccccchhHHHHHhhh
Q psy12308        139 HVVNRPYNTPIGLYSEQNIVDSINHH  164 (251)
Q Consensus       139 kvVhkQfNSPIGLYSd~NIaeTl~~Q  164 (251)
                      ++||+|||+||||||++||+|+|.+|
T Consensus         1 ~vv~~qyn~P~glys~~n~~~~l~~~   26 (26)
T smart00735        1 RVVHKQYNSPIGLYSSENIAETLQGQ   26 (26)
T ss_pred             CccccccCCCCCCCCcccHHHhhccC
Confidence            48999999999999999999999875



Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00