Psyllid ID: psy12309

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
MFADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVSR
ccccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHccccccHHHccccccccEEEEEcccccHHHHHHHHccccccccccc
ccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHEcccccccccccc
mfadsrpestfwifgkptynvalqkkwplylsTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKgnggfvwacknydgdvqsDIVAQGYGSLGLMTSilmcpdgktieseaahgtvtrhyrflgindintnvsr
mfadsrpestfwifgkptynvalqkkWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGtvtrhyrflgindintnvsr
MFADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVSR
*********TFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDIN*****
********STFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGI*********
********STFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVSR
***DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLG**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query152 2.2.26 [Sep-21-2011]
Q9Z2K9414 Isocitrate dehydrogenase N/A N/A 0.835 0.306 0.795 2e-59
Q9Z2K8414 Isocitrate dehydrogenase N/A N/A 0.835 0.306 0.795 2e-59
O75874414 Isocitrate dehydrogenase yes N/A 0.835 0.306 0.795 2e-59
Q5R9C5414 Isocitrate dehydrogenase yes N/A 0.835 0.306 0.795 2e-59
P50217416 Isocitrate dehydrogenase N/A N/A 0.828 0.302 0.809 3e-59
Q6XUZ5414 Isocitrate dehydrogenase N/A N/A 0.835 0.306 0.787 7e-59
P41562414 Isocitrate dehydrogenase yes N/A 0.835 0.306 0.787 8e-59
Q9XSG3414 Isocitrate dehydrogenase yes N/A 0.835 0.306 0.779 2e-58
P50218415 Isocitrate dehydrogenase N/A N/A 0.828 0.303 0.801 2e-58
O88844414 Isocitrate dehydrogenase yes N/A 0.835 0.306 0.787 4e-58
>sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 Back     alignment and function desciption
 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 113/127 (88%)

Query: 14  FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
           F   ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE  KIWYEHRLI
Sbjct: 192 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 251

Query: 74  DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
           DDMVAQA+K  GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 252 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGT 311

Query: 134 VTRHYRF 140
           VTRHYR 
Sbjct: 312 VTRHYRM 318

Microtus mexicanus (taxid: 79689)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1 Back     alignment and function description
>sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query152
242006237 399 isocitrate dehydrogenase, putative [Pedi 0.835 0.318 0.858 3e-61
170034336 397 isocitrate dehydrogenase [Culex quinquef 0.828 0.317 0.857 6e-61
357608729 455 NADPH-specific isocitrate dehydrogenase 0.875 0.292 0.789 4e-60
347969399 445 AGAP003168-PA [Anopheles gambiae str. PE 0.828 0.283 0.841 4e-60
151301209 435 NADPH-specific isocitrate dehydrogenase 0.835 0.291 0.811 4e-60
87248165 435 isocitrate dehydrogenase precursor [Bomb 0.835 0.291 0.803 6e-60
193580190 448 PREDICTED: isocitrate dehydrogenase [NAD 0.828 0.281 0.841 7e-60
91083633 436 PREDICTED: similar to isocitrate dehydro 0.828 0.288 0.849 1e-59
238580155 414 isocitrate dehydrogenase [Actias selene] 0.835 0.306 0.811 2e-59
146446845241 mitochondrial NADP+ isocitrate dehydroge 0.835 0.526 0.811 3e-59
>gi|242006237|ref|XP_002423960.1| isocitrate dehydrogenase, putative [Pediculus humanus corporis] gi|212507230|gb|EEB11222.1| isocitrate dehydrogenase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/127 (85%), Positives = 117/127 (92%)

Query: 14  FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
           F   ++ VALQKKWPLYLSTKNTILKKYDG FKDIFQE+YEK+YK  FE+AKIWYEHRLI
Sbjct: 178 FAHSSFQVALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKDYKKSFEEAKIWYEHRLI 237

Query: 74  DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
           DDMVAQALK  GGFVWACKNYDGDVQSDI+AQGYGSLGLMTS+LMCPDGKT+ESEAAHGT
Sbjct: 238 DDMVAQALKSAGGFVWACKNYDGDVQSDIIAQGYGSLGLMTSVLMCPDGKTMESEAAHGT 297

Query: 134 VTRHYRF 140
           VTRHYR 
Sbjct: 298 VTRHYRM 304

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170034336|ref|XP_001845030.1| isocitrate dehydrogenase [Culex quinquefasciatus] gi|167875663|gb|EDS39046.1| isocitrate dehydrogenase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|357608729|gb|EHJ66121.1| NADPH-specific isocitrate dehydrogenase [Danaus plexippus] Back     alignment and taxonomy information
>gi|347969399|ref|XP_312860.5| AGAP003168-PA [Anopheles gambiae str. PEST] gi|333468507|gb|EAA08466.6| AGAP003168-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|151301209|ref|NP_001093090.1| NADPH-specific isocitrate dehydrogenase [Bombyx mori] gi|95104535|gb|ABF51294.1| NADPH-specific isocitrate dehydrogenase [Bombyx mori] Back     alignment and taxonomy information
>gi|87248165|gb|ABD36135.1| isocitrate dehydrogenase precursor [Bombyx mori] Back     alignment and taxonomy information
>gi|193580190|ref|XP_001943698.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91083633|ref|XP_970446.1| PREDICTED: similar to isocitrate dehydrogenase [Tribolium castaneum] gi|270007851|gb|EFA04299.1| hypothetical protein TcasGA2_TC014590 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|238580155|gb|ACR46834.1| isocitrate dehydrogenase [Actias selene] Back     alignment and taxonomy information
>gi|146446845|gb|ABQ41277.1| mitochondrial NADP+ isocitrate dehydrogenase 2 [Artemia franciscana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query152
UNIPROTKB|O75874414 IDH1 "Isocitrate dehydrogenase 0.828 0.304 0.801 1.1e-55
UNIPROTKB|I3LDC7428 IDH1 "Isocitrate dehydrogenase 0.828 0.294 0.801 1.1e-55
UNIPROTKB|Q5R9C5414 IDH1 "Isocitrate dehydrogenase 0.828 0.304 0.801 1.1e-55
UNIPROTKB|Q9Z2K8414 IDH1 "Isocitrate dehydrogenase 0.828 0.304 0.801 1.1e-55
UNIPROTKB|Q9Z2K9414 IDH1 "Isocitrate dehydrogenase 0.828 0.304 0.801 1.1e-55
UNIPROTKB|F1PZA1414 IDH1 "Isocitrate dehydrogenase 0.828 0.304 0.793 2.3e-55
UNIPROTKB|Q6XUZ5414 IDH1 "Isocitrate dehydrogenase 0.828 0.304 0.793 2.3e-55
RGD|2862414 Idh1 "isocitrate dehydrogenase 0.828 0.304 0.793 2.9e-55
UNIPROTKB|F1LRD5421 Idh1 "Isocitrate dehydrogenase 0.828 0.299 0.793 2.9e-55
UNIPROTKB|F1NPG2418 IDH1 "Isocitrate dehydrogenase 0.828 0.301 0.793 3.7e-55
UNIPROTKB|O75874 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 101/126 (80%), Positives = 113/126 (89%)

Query:    14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
             F   ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE  KIWYEHRLI
Sbjct:   192 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 251

Query:    74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
             DDMVAQA+K  GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct:   252 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 311

Query:   134 VTRHYR 139
             VTRHYR
Sbjct:   312 VTRHYR 317
GO:0051287 "NAD binding" evidence=IEA
GO:0006097 "glyoxylate cycle" evidence=IEA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0006749 "glutathione metabolic process" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0008585 "female gonad development" evidence=IEA
GO:0048545 "response to steroid hormone stimulus" evidence=IEA
GO:0050661 "NADP binding" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=EXP;IDA
GO:0006102 "isocitrate metabolic process" evidence=IDA
GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA;TAS
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0005102 "receptor binding" evidence=IPI
GO:0005777 "peroxisome" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0005782 "peroxisomal matrix" evidence=TAS
GO:0006740 "NADPH regeneration" evidence=TAS
GO:0044255 "cellular lipid metabolic process" evidence=TAS
GO:0044281 "small molecule metabolic process" evidence=TAS
GO:0005737 "cytoplasm" evidence=IDA
UNIPROTKB|I3LDC7 IDH1 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R9C5 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z2K8 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Microtus ochrogaster (taxid:79684)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z2K9 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Microtus mexicanus (taxid:79689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZA1 IDH1 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6XUZ5 IDH1 "Isocitrate dehydrogenase [NADP] cytoplasmic" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms
RGD|2862 Idh1 "isocitrate dehydrogenase 1 (NADP+), soluble" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRD5 Idh1 "Isocitrate dehydrogenase [NADP]" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPG2 IDH1 "Isocitrate dehydrogenase [NADP]" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R9C5IDHC_PONAB1, ., 1, ., 1, ., 4, 20.79520.83550.3067yesN/A
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.72220.82890.3080yesN/A
Q75JR3IDHC_DICDI1, ., 1, ., 1, ., 4, 20.72220.81570.3009yesN/A
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.72220.82890.3080yesN/A
P41562IDHC_RAT1, ., 1, ., 1, ., 4, 20.78740.83550.3067yesN/A
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.79360.82890.3050yesN/A
O88844IDHC_MOUSE1, ., 1, ., 1, ., 4, 20.78740.83550.3067yesN/A
Q9XSG3IDHC_BOVIN1, ., 1, ., 1, ., 4, 20.77950.83550.3067yesN/A
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.76190.82890.2943yesN/A
P79089IDHP_ASPNG1, ., 1, ., 1, ., 4, 20.70630.82890.2530yesN/A
O75874IDHC_HUMAN1, ., 1, ., 1, ., 4, 20.79520.83550.3067yesN/A
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.7520.82230.2847yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 5e-97
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 2e-91
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 6e-86
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 3e-85
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 3e-84
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 4e-53
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 9e-34
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 5e-11
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 2e-06
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 6e-06
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 7e-06
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 2e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 5e-05
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 0.002
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information 
 Score =  285 bits (731), Expect = 5e-97
 Identities = 99/126 (78%), Positives = 114/126 (90%)

Query: 14  FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
           F +  +  AL +K PLYLSTKNTILKKYDG FKDIFQE+Y++ YK++FE+A +WYEHRLI
Sbjct: 193 FARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGLWYEHRLI 252

Query: 74  DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
           DDMVAQA+K  GGFVWACKNYDGDVQSDIVAQGYGSLGLMTS+L+CPDGKT+E+EAAHGT
Sbjct: 253 DDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGT 312

Query: 134 VTRHYR 139
           VTRHYR
Sbjct: 313 VTRHYR 318

Length = 413
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 152
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
KOG0785|consensus365 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784|consensus375 100.0
KOG0786|consensus363 100.0
KOG1526|consensus422 100.0
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 91.62
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 89.21
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 88.83
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 88.63
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 87.77
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 87.73
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 87.67
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 87.59
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 87.49
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 87.2
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-63  Score=421.30  Aligned_cols=141  Identities=24%  Similarity=0.255  Sum_probs=135.4

Q ss_pred             cccchHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309          4 DSRPESTFWIFGKPTYNVALQK-KWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK   82 (152)
Q Consensus         4 ~~~t~~~~eRiar~AF~~A~~r-~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~   82 (152)
                      .++||+++|||+|+||++|++| +++||++||+|||+.+++|||++++|++ ++||      +|+++|+|||+++||||+
T Consensus       151 ~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP------dv~~~~~~VD~aam~lV~  223 (348)
T COG0473         151 KVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP------DVELDHMYVDAAAMQLVR  223 (348)
T ss_pred             EeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC------CcchhHHhHHHHHHHHhh
Confidence            4699999999999999999999 5699999999999999999999999999 9999      999999999999999999


Q ss_pred             CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309         83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS  151 (152)
Q Consensus        83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~  151 (152)
                      +|++| ||||+|||||||||+||+|+|||||+||+|+|++..++||||+||||||||||++|||+|++.|
T Consensus       224 ~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDIAGkgiANPiA~IlS  293 (348)
T COG0473         224 NPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDIAGKGIANPIATILS  293 (348)
T ss_pred             CccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcccccCCCccChHHHHHH
Confidence            99999 9999999999999999999999999999999985337999999999999999999999999876

>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information
>KOG0786|consensus Back     alignment and domain information
>KOG1526|consensus Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 2e-60
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 2e-60
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 2e-60
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 2e-60
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 7e-59
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 2e-58
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 8e-53
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 2e-52
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 8e-52
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 5e-38
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 4e-33
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 1e-31
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (579), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 113/127 (88%)
Query: 14  FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
           F   ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE  KIWYEHRLI
Sbjct: 192 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 251
Query: 74  DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
           DDMVAQA+K  GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 252 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 311
Query: 134 VTRHYRF 140
           VTRHYR 
Sbjct: 312 VTRHYRM 318
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 3e-49
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 4e-49
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 5e-49
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 4e-46
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-42
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 3e-42
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 9e-11
1itw_A 741 Isocitrate dehydrogenase; greece KEY motif, oxidor 7e-08
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 9e-08
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-07
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 1e-07
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 2e-07
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 2e-07
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 6e-07
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 7e-07
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 2e-06
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 7e-06
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 1e-05
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 3e-05
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
 Score =  162 bits (411), Expect = 3e-49
 Identities = 93/126 (73%), Positives = 112/126 (88%)

Query: 14  FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
           F + ++N  LQ+K P+YLSTKNTILK YDG FKDIFQ+V+++ + +QF+  K+WYEHRLI
Sbjct: 213 FARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLI 272

Query: 74  DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
           DDMVA ALK +GG+VWACKNYDGDVQSDIVAQG+GSLGLMTS+LM PDGKT+E+EAAHGT
Sbjct: 273 DDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGT 332

Query: 134 VTRHYR 139
           VTRHYR
Sbjct: 333 VTRHYR 338
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query152
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 90.56
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 88.94
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 88.92
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 88.55
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 84.23
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
Probab=100.00  E-value=1.4e-61  Score=413.40  Aligned_cols=142  Identities=18%  Similarity=0.166  Sum_probs=136.1

Q ss_pred             ccccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309          3 ADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK   82 (152)
Q Consensus         3 ~~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~   82 (152)
                      -+++|++++|||+|+||+||++|+++||++||+|||+.||||||++|+||+ ++||      +|+++|++||++|||||+
T Consensus       148 ~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~eyp------~i~~~~~~vD~~~mqlv~  220 (337)
T 1w0d_A          148 VSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECYP------DVEVAYQHVDAATIHMIT  220 (337)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHHHH
T ss_pred             EEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHCC------ceEEEEEEHHHHHHHHhh
Confidence            468999999999999999999997789999999999999999999999998 8999      999999999999999999


Q ss_pred             CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCC-CeEEEecCCCCcccccccccCCccccccC
Q psy12309         83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDG-KTIESEAAHGTVTRHYRFLGINDINTNVS  151 (152)
Q Consensus        83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~-~~a~fEp~HGsApdiagk~~anp~~~~~~  151 (152)
                      +|++| ||||+|||||||||++|+++|||||+||+|+|+++ .++||||+|||||||+||++|||+|++.|
T Consensus       221 ~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPdiAGk~iANP~A~IlS  291 (337)
T 1w0d_A          221 DPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMS  291 (337)
T ss_dssp             CGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHH
T ss_pred             CcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhhhCCCCCcCCHHHHHH
Confidence            99999 99999999999999999999999999999999865 26999999999999999999999999865
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 152
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 2e-27
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 3e-26
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 3e-16
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 2e-11
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-10
d1itwa_ 740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 5e-08
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-06
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  103 bits (257), Expect = 2e-27
 Identities = 98/125 (78%), Positives = 112/125 (89%)

Query: 20  NVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQ 79
             A+QKKWPLY+STKNTILK YDG FKDIFQE++EK+YK+ F++ KIWYEHRLIDDMVAQ
Sbjct: 198 QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 257

Query: 80  ALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYR 139
            LK +GGFVWACKNYDGDVQSDI+AQG+GSLGLMTS+L+CPDGKTIE+EAAHGTVTRHYR
Sbjct: 258 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317

Query: 140 FLGIN 144
                
Sbjct: 318 EHQKG 322
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query152
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_ 740 Monomeric isocitrate dehydrogenase {Azotobacter vi 97.52
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 95.09
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.7e-57  Score=387.14  Aligned_cols=139  Identities=23%  Similarity=0.255  Sum_probs=133.8

Q ss_pred             cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309          4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG   83 (152)
Q Consensus         4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~   83 (152)
                      ..+|++++|||+|+||+||++|+++||++||+|||| ++++|+++++|++ ++||      +|++++++||+++||||++
T Consensus       165 ~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k-~~~lf~~~~~eva-~~yp------~I~~~~~~vD~~~~~lv~~  236 (363)
T d1cnza_         165 EVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-KTYP------DVELAHMYIDNATMQLIKD  236 (363)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------TSEEEEEEHHHHHHHHHHC
T ss_pred             EEeeHHHHHHHHHHHHHHHHhcCCceEEEccCccee-ehHHHHHHHHHHh-ccCC------CeEEehHhhhHHHHHHhhc
Confidence            368999999999999999999888999999999999 6899999999998 8999      9999999999999999999


Q ss_pred             CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309         84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS  151 (152)
Q Consensus        84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~  151 (152)
                      |++| ||||+|||||||||++|+++||+|++||+|+|+++ +++|||+|||||||+||++|||++++.|
T Consensus       237 P~~fdViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~-~a~fEp~HGsapdiaGk~~aNP~a~Ils  304 (363)
T d1cnza_         237 PSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAPDIAGKNIANPIAQILS  304 (363)
T ss_dssp             GGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCGGGTTTTCSCCHHHHHH
T ss_pred             cCCCceeeehhHHHHhHHHHHHHHhcccccchheeeeccc-eEEeccCCCcccccCCCCccChHHHHHH
Confidence            9999 99999999999999999999999999999999887 7999999999999999999999998764
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure