Psyllid ID: psy12310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MDLVNVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRAQAVASPFELSSEHDLNYVIKEQLGPKD
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEccccccccEEEEEEccccccccccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccHHHcccccccccccccccccccccccEEEEEEEccccccccEEEEEccccccccEEEEEEccccHHHcccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mdlvnvntnsksldaltstnqaliptrksgkpaqphqntftvvikrpnrhhswglriaggcdldspivitkvypgtpaaaelkRGDIIRkigdydsrdlrhkdatnffqssdtsislgiqrnppgekkaasgsrsvtplpivdycqkeskassasMSVVNSFHDFLDHQHVHraqavaspfelssehdlnyvikeqlgpkd
Flexible Loop (DISEMBL)
MDLVNVNtnsksldalTSTNQALIptrksgkpaqphqNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPgtpaaaelkrgdiiRKIGDYDSRDLRHKDAtnffqssdtsislgiqrnppgekkaasgsrsvtplPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRAQAVASPfelssehdlnyvikeqlgpkd
Low Complexity Region (SEG)
MDLVNVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRAQAVASPFELSSEHDLNYVIKEQLGPKD
Disordered region (IsUnstruct)
**************************************TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYD*********************************************IVDY**************VNSFHDFLDHQHVHRAQAVA**********LNYV*********
Disordered Region (DISOPRED)
*****************************************VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG****************************************************************************E******
Disordered Region (DISEMBL)
********NSKSLDALTSTNQALIPT*********HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR*************SVTPLPIVDYCQK*********SVVNSFHDFLDHQHVHRAQAVASPFELSSEHDLNYVIKEQLGPKD
Disordered Region (DISPRO)
*DLVNVNTN*KS***L****QA*************HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG***************************************************************L************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLVNVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRAQAVASPFELSSEHDLNYVIKEQLGPKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q6QGC0	365	PDZ and LIM domain protei	yes	N/A	0.343	0.189	0.371	5e-08
Q9PU47	315	PDZ and LIM domain protei	yes	N/A	0.343	0.219	0.371	6e-08
Q66HS7	362	PDZ and LIM domain protei	yes	N/A	0.343	0.190	0.371	6e-08
O70209	316	PDZ and LIM domain protei	yes	N/A	0.343	0.218	0.371	7e-08
Q53GG5	364	PDZ and LIM domain protei	no	N/A	0.393	0.217	0.349	7e-08
Q3SYZ8	316	PDZ and LIM domain protei	yes	N/A	0.343	0.218	0.371	8e-08
A1ZA47	2194	PDZ and LIM domain protei	no	N/A	0.671	0.061	0.294	1e-07
O75112	727	LIM domain-binding protei	no	N/A	0.512	0.141	0.271	2e-07
Q3T0C8	348	PDZ and LIM domain protei	no	N/A	0.432	0.25	0.352	5e-07
Q9JKS4	723	LIM domain-binding protei	no	N/A	0.402	0.112	0.294	5e-07

>sp|Q6QGC0|PDLI3_PIG PDZ and LIM domain protein 3 OS=Sus scrofa GN=PDLIM3 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGT-PAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R++GG D + P++IT++ PG+  AAA L  GD+I  I  Y +  + H DA +  +++
Sbjct: 13  WGFRLSGGIDFNQPLIITRITPGSKAAAANLCPGDVILAIDGYGTESMTHADAQDRIKAA 72

Query: 112 DTSISLGIQR 121
              + L I R
Sbjct: 73  AHQLCLKIDR 82

May play a role in the organization of actin filament arrays within muscle cells.
Sus scrofa (taxid: 9823)

>sp|Q9PU47|PDLI3_CHICK PDZ and LIM domain protein 3 OS=Gallus gallus GN=PDLIM3 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R++GG D + P++IT++ PG+ A+ A L  GDII  I    + ++ H DA    +++
Sbjct: 13  WGFRLSGGIDFNQPLIITRITPGSKASTANLCPGDIIVAINGLSTENMTHNDAQERIKAA 72

Query: 112 DTSISLGIQR 121
              +SL I+R
Sbjct: 73  AHQLSLRIER 82

May play a role in the organization of actin filament arrays within muscle cells.

Gallus gallus (taxid: 9031)

>sp|Q66HS7|PDLI3_RAT PDZ and LIM domain protein 3 OS=Rattus norvegicus GN=Pdlim3 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R++GG D + P+VIT++ PG+ A AA L  GD+I  I  + +  + H DA +  +++
Sbjct: 13  WGFRLSGGIDFNQPLVITRITPGSKAEAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 72

Query: 112 DTSISLGIQR 121
              + L I R
Sbjct: 73  SYQLCLKIDR 82

May play a role in the organization of actin filament arrays within muscle cells.

Rattus norvegicus (taxid: 10116)

>sp|O70209|PDLI3_MOUSE PDZ and LIM domain protein 3 OS=Mus musculus GN=Pdlim3 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGT-PAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R++GG D + P+VIT++ PG+  AAA L  GD+I  I  + +  + H DA +  +++
Sbjct: 13  WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 72

Query: 112 DTSISLGIQR 121
              + L I R
Sbjct: 73  SYQLCLKIDR 82

May play a role in the organization of actin filament arrays within muscle cells.

Mus musculus (taxid: 10090)

>sp|Q53GG5|PDLI3_HUMAN PDZ and LIM domain protein 3 OS=Homo sapiens GN=PDLIM3 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGT-PAAAELKRGDIIRKIGDYDSRDL 99
           TV++  P     WG R++GG D + P+VIT++ PG+  AAA L  GD+I  I  + +  +
Sbjct: 4   TVILPGPA---PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60

Query: 100 RHKDATNFFQSSDTSISLGIQRN 122
            H DA +  +++   + L I R 
Sbjct: 61  THADAQDRIKAAAHQLCLKIDRG 83

May play a role in the organization of actin filament arrays within muscle cells.

Homo sapiens (taxid: 9606)

>sp|Q3SYZ8|PDLI3_BOVIN PDZ and LIM domain protein 3 OS=Bos taurus GN=PDLIM3 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGT-PAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R++GG D + P+VIT++ PG+  AAA L  GD+I  I  + +  + H DA +  +++
Sbjct: 13  WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 72

Query: 112 DTSISLGIQR 121
              + L I R
Sbjct: 73  GHQLCLKIDR 82

May play a role in the organization of actin filament arrays within muscle cells.

Bos taurus (taxid: 9913)

>sp|A1ZA47|ZASP_DROME PDZ and LIM domain protein Zasp OS=Drosophila melanogaster GN=Zasp52 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D   P+++ KV  G+ +  A L+ GD + KI D D  +LRHKDA +    S
Sbjct: 19  WGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRS 78

Query: 112 DTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHV 171
             +  + +QR     +   + + +V P P   Y Q  +K S A        H   D QH+
Sbjct: 79  GNNFVITVQRGGSTWRPHVTPTGNV-PQPNSPYLQTVTKTSLA--------HKQQDSQHI 129

Query: 172 HRA-QAVASPFELSSEHDLNYVIKEQ 196
                  A PF    +  +  ++ +Q
Sbjct: 130 GCGYNNAARPFSNGGDGGVKSIVNKQ 155

Regulator of cell matrix adhesion having two related functions, one upstream of Actn organizing the Z line and the other downstream of integrins regulating assembly of integrin adhesion sites. Also required for the formation of myotendinous junctions in muscles.

Drosophila melanogaster (taxid: 7227)

>sp|O75112|LDB3_HUMAN LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
           +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct: 2   SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDY 144
            + H +A N  +S+  ++SL +Q++      + +     TPLP++ +
Sbjct: 59  TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPH 105

May function as an adapter in striated muscle to couple protein kinase C-mediated signaling via its LIM domains to the cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q3T0C8|PDLI2_BOVIN PDZ and LIM domain protein 2 OS=Bos taurus GN=PDLIM2 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG RI+GG D  +PI++TKV   G   AA+L+ GDII  I    ++D+ H +A +  + S
Sbjct: 13  WGFRISGGRDFHTPIMVTKVTERGKAEAADLRPGDIIVSINGESAKDMLHAEAQSKIRQS 72

Query: 112 DTSISLGIQRNPPGEKKAASGSRSVTPL 139
            + + L + R        A+G  S+  L
Sbjct: 73  PSPLRLQLDRPQAASPGQANGESSLEVL 100

Probable adapter protein located at the actin cytoskeleton that promotes cell attachment. Necessary for the migratory capacity of epithelial cells. Overexpression enhances cell adhesion to collagen and fibronectin and suppresses anchorage independent growth. May contribute to tumor cell migratory capacity.

Bos taurus (taxid: 9913)

>sp|Q9JKS4|LDB3_MOUSE LIM domain-binding protein 3 OS=Mus musculus GN=Ldb3 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 52/85 (61%), Gaps = 4/85 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
           +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct: 2   SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query: 98  DLRHKDATNFFQSSDTSISLGIQRN 122
            + H +A N  +S+  ++SL +Q++
Sbjct: 59  TMTHLEAQNKIKSASYNLSLTLQKS 83

May function as an adapter in striated muscle to couple protein kinase C-mediated signaling via its LIM domains to the cytoskeleton.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
357610215	220	hypothetical protein KGM_20121 [Danaus p	0.487	0.445	0.52	1e-21
328709525	93	PREDICTED: PDZ and LIM domain protein Za	0.417	0.903	0.535	1e-19
195326079	429	GM25076 [Drosophila sechellia] gi|194118	0.512	0.240	0.458	2e-18
194865828	429	GG14334 [Drosophila erecta] gi|190653407	0.502	0.235	0.448	3e-18
195491117	429	GE20762 [Drosophila yakuba] gi|194179526	0.527	0.247	0.437	3e-18
296531494	315	MIP21713p [Drosophila melanogaster]	0.537	0.342	0.438	4e-18
195588823	231	GD14114 [Drosophila simulans] gi|1941961	0.537	0.467	0.438	4e-18
281365866	378	Z band alternatively spliced PDZ-motif p	0.537	0.285	0.438	5e-18
28574408	402	Z band alternatively spliced PDZ-motif p	0.537	0.268	0.438	5e-18
45550577	298	Z band alternatively spliced PDZ-motif p	0.537	0.362	0.438	5e-18

>gi|357610215|gb|EHJ66875.1| hypothetical protein KGM_20121 [Danaus plexippus]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSR 97
           +TF V ++R +R  +WGLR+ GG DL +P+++T+V PGTPA  EL RGDII KI DYD+R
Sbjct: 2   HTFVVTLRRESRDTNWGLRLVGGSDLATPLIVTRVTPGTPAGKELVRGDIIAKIDDYDAR 61

Query: 98  DLRHKDATNFFQSSDTSISLGIQR--NPPGEKKAASGSRS 135
           DLRH+DA N F+++   I L +QR  N  G   AA   RS
Sbjct: 62  DLRHEDAQNLFRNAPKQIKLAVQRDVNRDGHGSAALAPRS 101

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709525|ref|XP_003243984.1| PREDICTED: PDZ and LIM domain protein Zasp-like [Acyrthosiphon pisum]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 64/84 (76%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSR 97
           +T++V +KR  +   WG+R+AGG DL++P++ITKVY  +P+ + L+ GDIIRKI  YD+R
Sbjct: 7   STWSVTLKRDGKSQPWGIRLAGGADLNTPLIITKVYARSPSESSLRVGDIIRKIEVYDAR 66

Query: 98  DLRHKDATNFFQSSDTSISLGIQR 121
           DLRH DA N F ++D SI+L IQR
Sbjct: 67  DLRHLDAQNLFGNADQSITLVIQR 90

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326079|ref|XP_002029757.1| GM25076 [Drosophila sechellia] gi|194118700|gb|EDW40743.1| GM25076 [Drosophila sechellia]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 6/109 (5%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDL 99
           F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+YD+RDL
Sbjct: 8   FAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEYDARDL 67

Query: 100 RHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLPIV 142
            H DA   F+ +   I L + R+          ++AA GSRS + LP V
Sbjct: 68  SHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAAPGSRSNSTLPPV 116

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865828|ref|XP_001971624.1| GG14334 [Drosophila erecta] gi|190653407|gb|EDV50650.1| GG14334 [Drosophila erecta]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 6/107 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQAGSPAQGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRS 135
           D+RDL H DA + F+ +   I L + R+        G ++A  GSRS
Sbjct: 63  DARDLSHADAQHLFRGAGNEIRLVVHRDNKIAYTQGGTQEAGPGSRS 109

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491117|ref|XP_002093425.1| GE20762 [Drosophila yakuba] gi|194179526|gb|EDW93137.1| GE20762 [Drosophila yakuba]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 6/112 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLP 140
           D+RDL H DA   F+ +   I L + R+        G ++A  GSRS + +P
Sbjct: 63  DARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGGTQEAGPGSRSNSTVP 114

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296531494|gb|ADH29882.1| MIP21713p [Drosophila melanogaster]

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLPIV 142
           D+RDL H DA   F+ +   I L + R+          ++A  GSRS + LP V
Sbjct: 63  DARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAGPGSRSNSTLPPV 116

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588823|ref|XP_002084156.1| GD14114 [Drosophila simulans] gi|194196165|gb|EDX09741.1| GD14114 [Drosophila simulans]

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLPIV 142
           D+RDL H DA   F+ +   I L + R+          ++A  GSRS + LP V
Sbjct: 63  DARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAGPGSRSNSTLPPV 116

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281365866|ref|NP_001163382.1| Z band alternatively spliced PDZ-motif protein 66, isoform K [Drosophila melanogaster] gi|115646444|gb|ABJ17060.1| IP16036p [Drosophila melanogaster] gi|272455102|gb|ACZ94653.1| Z band alternatively spliced PDZ-motif protein 66, isoform K [Drosophila melanogaster]

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLPIV 142
           D+RDL H DA   F+ +   I L + R+          ++A  GSRS + LP V
Sbjct: 63  DARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAGPGSRSNSTLPPV 116

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574408|ref|NP_729396.2| Z band alternatively spliced PDZ-motif protein 66, isoform F [Drosophila melanogaster] gi|16183154|gb|AAL13644.1| GH19182p [Drosophila melanogaster] gi|28380560|gb|AAN11991.2| Z band alternatively spliced PDZ-motif protein 66, isoform F [Drosophila melanogaster] gi|220945484|gb|ACL85285.1| CG6416-PF [synthetic construct] gi|220955296|gb|ACL90191.1| CG6416-PF [synthetic construct]

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLPIV 142
           D+RDL H DA   F+ +   I L + R+          ++A  GSRS + LP V
Sbjct: 63  DARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAGPGSRSNSTLPPV 116

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45550577|ref|NP_648246.3| Z band alternatively spliced PDZ-motif protein 66, isoform B [Drosophila melanogaster] gi|45445990|gb|AAN11992.2| Z band alternatively spliced PDZ-motif protein 66, isoform B [Drosophila melanogaster]

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDY 94
           P  + F VV+ R  +   WG+R+ GG DLD+P++IT+V  G+PA  EL RGDII KIG+Y
Sbjct: 3   PKLHEFAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEY 62

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRN------PPGEKKAASGSRSVTPLPIV 142
           D+RDL H DA   F+ +   I L + R+          ++A  GSRS + LP V
Sbjct: 63  DARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGATQEAGPGSRSNSTLPPV 116

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
UNIPROTKB|F1PQW6	356	PDLIM2 "Uncharacterized protei	0.487	0.275	0.352	9.7e-09
RGD|1564875	283	Ldb3 "LIM domain binding 3" [R	0.601	0.427	0.261	3.3e-08
UNIPROTKB|F5H0C2	648	LDB3 "LIM domain-binding prote	0.527	0.163	0.279	4.9e-08
UNIPROTKB|O75112	727	LDB3 "LIM domain-binding prote	0.527	0.145	0.279	5.8e-08
UNIPROTKB|G3N3C9	730	LDB3 "Uncharacterized protein"	0.601	0.165	0.261	8.5e-08
FB|FBgn0035917	430	Zasp66 "Z band alternatively s	0.353	0.165	0.441	1.2e-07
FB|FBgn0083919	2194	Zasp52 "Z band alternatively s	0.671	0.061	0.294	1.2e-07
UNIPROTKB|E2QW94	586	LDB3 "Uncharacterized protein"	0.601	0.206	0.261	1.4e-07
UNIPROTKB|D6RAN1	90	PDLIM7 "PDZ and LIM domain pro	0.437	0.977	0.326	1.6e-07
UNIPROTKB|D4ADB1	684	D4ADB1 "Uncharacterized protei	0.601	0.176	0.261	1.8e-07

UNIPROTKB|F1PQW6 PDLIM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 36/102 (35%), Positives = 52/102 (50%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSR 97
             T TV +  P     WG RI GG D  SPI++TKV   G   AA+L+ GDII  I    + 
Sbjct:     2 TLTVDVAGPG---PWGFRITGGRDFHSPIMVTKVTERGKAEAADLRPGDIIVAINGESAE 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPL 139
              + H +A +  + S + + L + R+P    +  +G  SV  L
Sbjct:    59 GMLHAEAQSKIRHSPSPLRLQLDRSPAASPRQTNGESSVEVL 100

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1564875 Ldb3 "LIM domain binding 3" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 33/126 (26%), Positives = 68/126 (53%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct:     2 SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMS 157
              + H +A N  +S+  ++SL +Q++      + +     +PLP++ + QK    S A+  
Sbjct:    59 TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPH-QKVVANSPANAD 117

Query:   158 VVNSFH 163
                 F+
Sbjct:   118 YQERFN 123

GO:0003674 "molecular_function" evidence=ND

GO:0005080 "protein kinase C binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005856 "cytoskeleton" evidence=ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030018 "Z disc" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

UNIPROTKB|F5H0C2 LDB3 "LIM domain-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 31/111 (27%), Positives = 64/111 (57%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct:     2 SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKE 148
              + H +A N  +S+  ++SL +Q++      + +     TPLP++ + QK+
Sbjct:    59 TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPH-QKD 108

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O75112 LDB3 "LIM domain-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.8e-08, P = 5.8e-08
 Identities = 31/111 (27%), Positives = 64/111 (57%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct:     2 SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKE 148
              + H +A N  +S+  ++SL +Q++      + +     TPLP++ + QK+
Sbjct:    59 TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPH-QKD 108

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0031143 "pseudopodium" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

UNIPROTKB|G3N3C9 LDB3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 33/126 (26%), Positives = 68/126 (53%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct:     2 SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMS 157
              + H +A N  +S+  ++SL +Q++      + +     +PLP++ + QK+    + S  
Sbjct:    59 TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTAAPPIQSPLPVIPH-QKDPALDTNSSL 117

Query:   158 VVNSFH 163
                S H
Sbjct:   118 AAASPH 123

GO:0030018 "Z disc" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0035917 Zasp66 "Z band alternatively spliced PDZ-motif protein 66" [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 34/77 (44%), Positives = 44/77 (57%)

Query:    72 VYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP------G 125
             V  G+PA  EL RGDII KIG+YD+RDL H DA   F+ +   I L + R+         
Sbjct:    68 VQVGSPAHGELLRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHRDNKIAYTQGA 127

Query:   126 EKKAASGSRSVTPLPIV 142
              ++A  GSRS + LP V
Sbjct:   128 TQEAGPGSRSNSTLPPV 144

GO:0007498 "mesoderm development" evidence=IEP

GO:0008157 "protein phosphatase 1 binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

FB|FBgn0083919 Zasp52 "Z band alternatively spliced PDZ-motif protein 52" [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 43/146 (29%), Positives = 67/146 (45%)

Query:    53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
             WG R+ GG D   P+++ KV  G+ +  A L+ GD + KI D D  +LRHKDA +    S
Sbjct:    19 WGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRS 78

Query:   112 DTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHV 171
               +  + +QR     +   + + +V P P   Y Q  +K S A        H   D QH+
Sbjct:    79 GNNFVITVQRGGSTWRPHVTPTGNV-PQPNSPYLQTVTKTSLA--------HKQQDSQHI 129

Query:   172 HRA-QAVASPFELSSEHDLNYVIKEQ 196
                    A PF    +  +  ++ +Q
Sbjct:   130 GCGYNNAARPFSNGGDGGVKSIVNKQ 155

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0005927 "muscle tendon junction" evidence=IDA

GO:0061061 "muscle structure development" evidence=IMP

UNIPROTKB|E2QW94 LDB3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 33/126 (26%), Positives = 68/126 (53%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct:     2 SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMS 157
              + H +A N  +S+  ++SL +Q++      + +     +PLP++ + QK    S A+  
Sbjct:    59 TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPH-QKVVANSPANAD 117

Query:   158 VVNSFH 163
                 F+
Sbjct:   118 YQERFN 123

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RAN1 PDLIM7 "PDZ and LIM domain protein 7" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query:    38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
             ++F VV++ P     WG R+ GG D + P+ I+++ PG  AA A +  GD +  I   ++
Sbjct:     2 DSFKVVLEGPA---PWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENA 58

Query:    97 RDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
               L H +A N  ++    +SLG+ R  P + K
Sbjct:    59 GSLTHIEAQNKIRACGERLSLGLSRAQPVQSK 90

GO:0001725 "stress fiber" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

UNIPROTKB|D4ADB1 D4ADB1 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/126 (26%), Positives = 68/126 (53%)

Query:    39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct:     2 SYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query:    98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMS 157
              + H +A N  +S+  ++SL +Q++      + +     +PLP++ + QK    S A+  
Sbjct:    59 TMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPH-QKVVANSPANAD 117

Query:   158 VVNSFH 163
                 F+
Sbjct:   118 YQERFN 123

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	201
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	3e-15
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-13
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	7e-11
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	1e-07
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	5e-06
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	1e-05
TIGR03900	973	TIGR03900, prc_long_Delta, putative carboxyl-termi	5e-04
pfam13180	81	pfam13180, PDZ_2, PDZ domain	0.002
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	0.003
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	0.003

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 67.6 bits (166), Expect = 3e-15
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             TV +++ +     G  + GG D    I +++V PG PA    L+ GD I ++      
Sbjct: 1   VRTVTLRK-DPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVE 59

Query: 98  DLRHKDATNFFQSSDTSISLGIQ 120
            L H++A    ++S   ++L ++
Sbjct: 60  GLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
               V +++       G  + GG D    +V++ V PG+PAA A L+ GD+I ++     
Sbjct: 1   EPRLVELEK--GGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSV 58

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRNP 123
             L H +A +  + +   ++L + R  
Sbjct: 59  EGLTHLEAVDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 55.7 bits (135), Expect = 7e-11
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 43  VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRH 101
           V    +     G  + GG D D  I +++V PG  A A  L+ GD I  I   D  +L H
Sbjct: 2   VTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLSH 61

Query: 102 KDATNFFQSSDTSISLGIQ 120
            +A    + S   ++L I 
Sbjct: 62  DEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 60  GCDLDSP---IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQ-SSDTS 114
           G +L      +VIT V PG+PAA A +K GDII  I       L  +D     +  + T 
Sbjct: 5   GLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTK 64

Query: 115 ISLGIQRNPPGEK 127
           + L ++R     +
Sbjct: 65  VRLTLKRGDGEPR 77

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 55  LRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDY---DSRDLRHKDATNFFQS 110
           L    G      +++  V PG+PAA A LK GD+I  +         DLR   A      
Sbjct: 14  LAEELGLKDTKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAEL---K 70

Query: 111 SDTSISLGIQRN 122
               ++L + R 
Sbjct: 71  PGDKVTLTVLRG 82

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 54  GLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATN 106
           G  I GG   +  +V+  V PG+PA  A L+ GD+I  +   D ++L  +D   
Sbjct: 4   GFSIRGG--TEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAE 55

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|234386 TIGR03900, prc_long_Delta, putative carboxyl-terminal-processing protease, deltaproteobacterial

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 64  DSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQR 121
           D  + + +V PGTPAA A L+R D+I KI D  + ++   DA    +   DT +++ ++R
Sbjct: 150 DRNLTVVRVIPGTPAARAGLQRNDVIVKIDDESTVNMTLNDAVGRLRGPPDTKVTIWVRR 209

Query: 122 NPPGEKKAASGSRSVTPLPIV 142
               E K    +R++  +  V
Sbjct: 210 EGWDEAKRFELTRAMIKVESV 230

This model describes a multidomain protein of about 1070 residues, restricted to the order Myxococcales in the Deltaproteobacteria. Members contain a PDZ domain (pfam00595), an S41 family peptidase domain (pfam03572), and an SH3 domain (pfam06347). A core region of this family, including PDZ and S41 regions, is described by TIGR00225, C-terminal processing peptidase, which recognizes the Prc protease. The species distribution of this family approximates that of largely Deltaproteobacterial C-terminal putative protein-sorting domain, TIGR03901, analogous to LPXTG and PEP-CTERM, but the co-occurrence may reflect shared restriction to the Myxococcales rather than a substrate/target relationship. Length = 973

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 64  DSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
            + + +  V  G+PAA A LK GDII  I       L              ++ L + R+
Sbjct: 12  GTGVTVVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVILNGKPGDTVKLTVYRD 71

Query: 123 PPGEKK 128
             G+KK
Sbjct: 72  --GKKK 75

Length = 81

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 67  IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRH-KDATNFFQSSDTSISLGIQRN 122
           +V+TKV  G+PAA A L+ GD+I  +       +   +      +     ++L I R 
Sbjct: 364 VVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLARAKKGG-RVALLILRG 420

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 57  IAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSD 112
           IA G  + +  V+  V PG+PAA A +K GDII  +         DL    A+N      
Sbjct: 262 IALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASN---RPG 318

Query: 113 TSISLGIQRN 122
             ++L + R 
Sbjct: 319 DEVALKLLRG 328

Length = 347

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.61
KOG3550|consensus	207		99.53
KOG3209|consensus	984		99.4
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	99.35
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.35
KOG3549|consensus	505		99.34
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.31
KOG3551|consensus	506		99.27
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.25
PLN00049	389	carboxyl-terminal processing protease; Provisional	99.22
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	99.16
KOG3209|consensus	984		99.12
PRK11186	667	carboxy-terminal protease; Provisional	99.12
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.11
KOG3553|consensus	124		99.06
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.01
KOG3580|consensus	1027		98.96
KOG3552|consensus	1298		98.81
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.8
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.74
KOG1892|consensus	1629		98.71
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.7
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.63
KOG3542|consensus	1283		98.59
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.56
KOG3580|consensus	1027		98.55
KOG3651|consensus	429		98.53
KOG3606|consensus	358		98.51
KOG3571|consensus	626		98.49
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.35
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.29
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.25
PRK10139	455	serine endoprotease; Provisional	98.23
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.16
PRK10942	473	serine endoprotease; Provisional	98.16
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.16
PRK10898	353	serine endoprotease; Provisional	98.15
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.11
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.1
PRK10139	455	serine endoprotease; Provisional	98.05
PRK10942	473	serine endoprotease; Provisional	98.01
KOG3605|consensus	829		97.71
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.68
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.62
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.55
KOG0606|consensus	1205		97.51
KOG3129|consensus	231		97.49
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.47
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.43
PRK09681	276	putative type II secretion protein GspC; Provision	97.42
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.34
KOG0609|consensus	542		97.04
KOG3605|consensus	829		96.88
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.59
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.53
KOG3532|consensus	1051		96.44
KOG1320|consensus	473		96.38
KOG3938|consensus	334		96.38
KOG1421|consensus	955		96.22
COG3031	275	PulC Type II secretory pathway, component PulC [In	96.19
KOG1738|consensus	638		95.33
smart00735	26	ZM ZASP-like motif. Short motif (26 amino acids) p	94.62
KOG1703|consensus	479		94.59
PF12812	78	PDZ_1: PDZ-like domain	92.19
KOG4407|consensus	1973		90.84
COG0750	375	Predicted membrane-associated Zn-dependent proteas	88.69
KOG3834|consensus	462		88.63
KOG0792|consensus	1144		87.97
KOG4371|consensus	1332		87.63
KOG2921|consensus	484		84.63
KOG4407|consensus	1973		80.45

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.61  E-value=3.4e-15  Score=104.86  Aligned_cols=79  Identities=29%  Similarity=0.570  Sum_probs=72.0

Q ss_pred             EEEEecCCCCceeEEEEEeecCCC-CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310         41 TVVIKRPNRHHSWGLRIAGGCDLD-SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG  118 (201)
Q Consensus        41 ~V~L~r~~~~~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~  118 (201)
                      +|+|.|. ...+|||.+.++.+.. .+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++.++..|+|+
T Consensus         1 ~v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~   79 (81)
T PF00595_consen    1 QVTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT   79 (81)
T ss_dssp             EEEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred             CEEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence            4788886 6799999999998853 68999999999999 7889999999999999999999999999999998899998


Q ss_pred             EE
Q psy12310        119 IQ  120 (201)
Q Consensus       119 v~  120 (201)
                      |+
T Consensus        80 V~   81 (81)
T PF00595_consen   80 VQ   81 (81)
T ss_dssp             EE
T ss_pred             EC
Confidence            85

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3550|consensus

Probab=99.53  E-value=3e-14  Score=110.78  Aligned_cols=86  Identities=26%  Similarity=0.495  Sum_probs=78.7

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      ..+.+.|.|.+.+  .++||.+.||++.+.||+|++|+||+.|  .+||+.||.+++|||+++++--|+.|+.++|.+-.
T Consensus        88 hahprvvelpktd--eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g  165 (207)
T KOG3550|consen   88 HAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG  165 (207)
T ss_pred             CCCCceeecCccc--cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC
Confidence            4467789998865  7799999999999999999999999999  58999999999999999999999999999999989


Q ss_pred             eEEEEEEeCC
Q psy12310        114 SISLGIQRNP  123 (201)
Q Consensus       114 ~v~L~v~R~~  123 (201)
                      .|.|+|....
T Consensus       166 svklvvrytp  175 (207)
T KOG3550|consen  166 SVKLVVRYTP  175 (207)
T ss_pred             cEEEEEecCh
Confidence            9999987654

>KOG3209|consensus

Probab=99.40  E-value=9e-13  Score=122.55  Aligned_cols=84  Identities=20%  Similarity=0.449  Sum_probs=75.9

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ...++|+|.|  +..+|||+|+||+++..++||.++.+++||  .+.++.||+|+.|||..+.+|+|..|+++||.-|..
T Consensus       897 ~~~~~VelEr--G~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~  974 (984)
T KOG3209|consen  897 GDLYTVELER--GAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRR  974 (984)
T ss_pred             CCeeEEEeec--cccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeE
Confidence            3688999999  468899999999999999999999999999  578999999999999999999999999999988777


Q ss_pred             EEEEEEeC
Q psy12310        115 ISLGIQRN  122 (201)
Q Consensus       115 v~L~v~R~  122 (201)
                      +.|.++|+
T Consensus       975 vll~Lr~g  982 (984)
T KOG3209|consen  975 VLLLLRRG  982 (984)
T ss_pred             EEEEeccC
Confidence            77666543

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=5e-12  Score=113.89  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=107.0

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCCCCc
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPGEK  127 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~~~~  127 (201)
                      ..+.|..+.-...  ..+.|.++.+++|| .+||++||+|++|||.++.++...+++..|++. |+.|+|++.|.+..++
T Consensus        99 ~~GiG~~i~~~~~--~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~  176 (406)
T COG0793          99 FGGIGIELQMEDI--GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKP  176 (406)
T ss_pred             ccceeEEEEEecC--CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCce
Confidence            3557777765442  57899999999999 899999999999999999999999999999888 9999999999865667


Q ss_pred             cccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310        128 KAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL  197 (201)
Q Consensus       128 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~  197 (201)
                      ......|..+.+..+.....              +.. ..+..|||+  .+|+......++.++.+|+++++
T Consensus       177 ~~v~l~Re~i~l~~v~~~~~--------------~~~-~~~~~IGyI~I~~F~~~~~~~~~~al~~L~~~~~  233 (406)
T COG0793         177 FTVTLTREEIELEDVAAKEK--------------VEE-GGKGRIGYIRIPSFGEGTYEDLEKALDELKKQGA  233 (406)
T ss_pred             eEEEEEEEEEeccceeeeee--------------eec-CCCceEEEEEecccccchHHHHHHHHHHHHhcCC
Confidence            77777788887777765100              111 224459997  99999999999999999999885

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.35  E-value=1.2e-11  Score=86.09  Aligned_cols=79  Identities=27%  Similarity=0.501  Sum_probs=67.7

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG  118 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~  118 (201)
                      +.+.+.+. ...+|||.+.++.+...+++|..|.++||| .++|++||+|++|||.++.++++.+....++.....+.|+
T Consensus         2 ~~~~l~~~-~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~   80 (82)
T cd00992           2 RTVTLRKD-PGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT   80 (82)
T ss_pred             EEEEEEeC-CCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence            35777775 368899999987654568999999999999 8999999999999999999999999999998876677776


Q ss_pred             E
Q psy12310        119 I  119 (201)
Q Consensus       119 v  119 (201)
                      +
T Consensus        81 v   81 (82)
T cd00992          81 V   81 (82)
T ss_pred             E
Confidence            5

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3549|consensus

Probab=99.34  E-value=3e-12  Score=111.18  Aligned_cols=107  Identities=25%  Similarity=0.450  Sum_probs=92.3

Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEE
Q psy12310         12 SLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIR   89 (201)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il   89 (201)
                      ..|.|+.+.|...+.  +|.|....  +++|++.|. .-++||++|.||.++..|++|++|.++-.| . +-|..||-|+
T Consensus        32 tke~L~iQkqdVvcv--sG~p~~s~--eRtVtirRQ-~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAil  106 (505)
T KOG3549|consen   32 TKELLSIQKQDVVCV--SGPPMESK--ERTVTIRRQ-KVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAIL  106 (505)
T ss_pred             HHHHhhhhccceEec--CCCCccCC--ceeEEEEee-ecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeE
Confidence            357888899988887  56666654  446777765 467899999999999999999999999999 4 6699999999


Q ss_pred             EECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310         90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP  123 (201)
Q Consensus        90 ~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~  123 (201)
                      +|||..+..++|++++.+++.+|..|+|+|..-.
T Consensus       107 qvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~lr  140 (505)
T KOG3549|consen  107 QVNGIYVTACPHEEVVNILRNAGDEVTLTVKHLR  140 (505)
T ss_pred             EeccEEeecCChHHHHHHHHhcCCEEEEEeHhhh
Confidence            9999999999999999999999999999987543

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.31  E-value=4.3e-11  Score=83.43  Aligned_cols=82  Identities=27%  Similarity=0.494  Sum_probs=69.7

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG  118 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~  118 (201)
                      ..+.+.+..  ..|||.+..+.....+++|..|.++||| .+||++||+|++|||..+.++++.+....++..+..+.|+
T Consensus         3 ~~~~~~~~~--~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~   80 (85)
T smart00228        3 RLVELEKGG--GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT   80 (85)
T ss_pred             EEEEEEECC--CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            457777763  7899999876543368999999999999 8999999999999999999999998888887777799999


Q ss_pred             EEeCC
Q psy12310        119 IQRNP  123 (201)
Q Consensus       119 v~R~~  123 (201)
                      +.|.+
T Consensus        81 i~r~~   85 (85)
T smart00228       81 VLRGG   85 (85)
T ss_pred             EEeCC
Confidence            98863

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3551|consensus

Probab=99.27  E-value=3.6e-11  Score=105.66  Aligned_cols=86  Identities=24%  Similarity=0.388  Sum_probs=77.1

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..++|++.|. ..+++|++|.||++...||.|++|++|-.| + ..|..||.|++|||.++.+.+|++|+..+|++|..|
T Consensus        84 ~~R~V~V~K~-d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV  162 (506)
T KOG3551|consen   84 AERRVRVVKQ-DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEV  162 (506)
T ss_pred             ccceeEEEEe-cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCcee
Confidence            4577888776 468899999999999999999999999999 6 469999999999999999999999999999999999


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|.|+.-.+
T Consensus       163 ~levKy~RE  171 (506)
T KOG3551|consen  163 LLEVKYMRE  171 (506)
T ss_pred             eeeeeeehh
Confidence            888875443

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.25  E-value=4.8e-11  Score=80.90  Aligned_cols=66  Identities=29%  Similarity=0.599  Sum_probs=59.1

Q ss_pred             eeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEE
Q psy12310         52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGI  119 (201)
Q Consensus        52 ~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v  119 (201)
                      ++||.+.++.+  .+++|..|.+++|| .+||++||+|++|||.++.++++.++..+++.. +..+.|++
T Consensus         2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            58999987665  47999999999999 899999999999999999999999999999876 58888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=99.22  E-value=1.3e-10  Score=104.19  Aligned_cols=134  Identities=16%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             CceeEEEEEeecCC---CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCC
Q psy12310         50 HHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPP  124 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~  124 (201)
                      ..++|+.+.-....   ..+++|..|.++||| .+||++||+|++|||.++.+++..++..++++. +..+.|+|.|++.
T Consensus        84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~  163 (389)
T PLN00049         84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE  163 (389)
T ss_pred             ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            35577776432221   136899999999999 899999999999999999998888877777764 8899999999764


Q ss_pred             CCccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310        125 GEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL  197 (201)
Q Consensus       125 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~  197 (201)
                      .  ......|.....+++.+...           ..... ..++.+|||+  ..|+........++++++.++++
T Consensus       164 ~--~~~~l~r~~v~~~~v~~~~~-----------~~~~~-~~~~~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~~  224 (389)
T PLN00049        164 T--RLVTLTREKVSLNPVKSRLC-----------EVPGP-GAGSPKIGYIKLTTFNQNASSAVKEAIETLRANGV  224 (389)
T ss_pred             E--EEEEEEeeeEeccceeeEEE-----------eeccc-cCCCCCEEEEEeccccchhHHHHHHHHHHHHHCCC
Confidence            3  23333344444444432110           00001 1234589997  89999888888999999988775

>TIGR00225 prc C-terminal peptidase (prc)

Probab=99.16  E-value=2.4e-10  Score=100.39  Aligned_cols=127  Identities=23%  Similarity=0.281  Sum_probs=89.3

Q ss_pred             ceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCCCcc
Q psy12310         51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPPGEKK  128 (201)
Q Consensus        51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~~~~~  128 (201)
                      .++|+.+.--   ..+++|..|.++||| .+||++||+|++|||.++.+++..+...+++. .+..+.|++.|++.....
T Consensus        51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~  127 (334)
T TIGR00225        51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPL  127 (334)
T ss_pred             EEEEEEEEEE---CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceE
Confidence            4577777542   236899999999999 89999999999999999999876677666655 488999999998755333


Q ss_pred             ccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310        129 AASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL  197 (201)
Q Consensus       129 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~  197 (201)
                      .....+.....+.+.                ..+. ..++.+|||+  ..|.........+++.+|.++++
T Consensus       128 ~v~l~~~~~~~~~v~----------------~~~~-~~~~~~igYi~i~~f~~~~~~~~~~~l~~l~~~~~  181 (334)
T TIGR00225       128 TFTLKRDRIELQTVK----------------ASVK-KVGGKSVGYIRISSFSEHTTEDVKKALDKLEKKNA  181 (334)
T ss_pred             EEEEEEEEeeccceE----------------EEEE-cCCCcEEEEEEEEecccchHHHHHHHHHHHHhccC
Confidence            333222221111111                1111 1335679997  88988887788888888877654

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3209|consensus

Probab=99.12  E-value=2.7e-10  Score=106.32  Aligned_cols=84  Identities=23%  Similarity=0.460  Sum_probs=76.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DT  113 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~  113 (201)
                      +...|-|.|.  ..+|||+|.||-+.+.||+|..|++.+.|  ++.|++||.|+.|+|.+|.+.+|.+++.+|..+  ..
T Consensus       649 k~ldV~L~rk--esGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArng  726 (984)
T KOG3209|consen  649 KELDVFLRRK--ESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNG  726 (984)
T ss_pred             cceeEEEEee--ccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcC
Confidence            6778999985  47899999999999999999999999999  588999999999999999999999999999755  67


Q ss_pred             eEEEEEEeCC
Q psy12310        114 SISLGIQRNP  123 (201)
Q Consensus       114 ~v~L~v~R~~  123 (201)
                      .|.|+|+|.-
T Consensus       727 hV~LtVRRkv  736 (984)
T KOG3209|consen  727 HVNLTVRRKV  736 (984)
T ss_pred             ceEEEEeeee
Confidence            8999998853

>PRK11186 carboxy-terminal protease; Provisional

Probab=99.12  E-value=4.2e-10  Score=106.74  Aligned_cols=130  Identities=18%  Similarity=0.191  Sum_probs=92.9

Q ss_pred             ceeEEEEEeecCCCCCcEEEEECCCCcc-cc-CCCCCCEEEEEC--C---EECCCCCHHHHHHHHhCC-CCeEEEEEEeC
Q psy12310         51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AA-ELKRGDIIRKIG--D---YDSRDLRHKDATNFFQSS-DTSISLGIQRN  122 (201)
Q Consensus        51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a-gL~~GD~Il~In--g---~~v~~~~~~~av~~ik~~-g~~v~L~v~R~  122 (201)
                      .+.|+.+.--   ...++|..|.+|||| .+ ||++||+|++||  |   .++.+++..+++.+|++. |..|.|+|.|.
T Consensus       244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            4567776542   235899999999999 76 999999999999  4   356688889999999887 89999999985


Q ss_pred             CC-CCccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcCC
Q psy12310        123 PP-GEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQLG  198 (201)
Q Consensus       123 ~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~~  198 (201)
                      +. .........|....++....              ..... ..++.+|||+  ..|...+...+.+++++|.++++.
T Consensus       321 ~~~~~~~~vtl~R~~i~l~~~~~--------------k~~v~-~~~~~kIGYI~I~sF~~~~~~d~~~~l~~l~~~~v~  384 (667)
T PRK11186        321 GKGTKTRIVTLTRDKIRLEDRAV--------------KMSVK-TVGGEKVGVLDIPGFYVGLTDDVKKQLQKLEKQNVS  384 (667)
T ss_pred             CCCCceEEEEEEeeeecccccce--------------EEEEE-ecCCCcEEEEEecccccchHHHHHHHHHHHHHCCCC
Confidence            42 23344444454443322110              00111 1235689997  899998888999999999988763

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.11  E-value=2.9e-10  Score=80.00  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=53.6

Q ss_pred             eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHH--hCCCCeEEEEEEeCCCC
Q psy12310         53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFF--QSSDTSISLGIQRNPPG  125 (201)
Q Consensus        53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~i--k~~g~~v~L~v~R~~~~  125 (201)
                      +|+.+..-.. ..+++|..|.++||| .+||++||+|++|||.++.++.+..  ..+  ...+..+.|++.|+++.
T Consensus         3 lGv~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--~~l~~~~~g~~v~l~v~R~g~~   75 (82)
T PF13180_consen    3 LGVTVQNLSD-TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLV--NILSKGKPGDTVTLTVLRDGEE   75 (82)
T ss_dssp             -SEEEEECSC-SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHH--HHHHCSSTTSEEEEEEEETTEE
T ss_pred             ECeEEEEccC-CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHH--HHHHhCCCCCEEEEEEEECCEE
Confidence            5666654332 357999999999999 9999999999999999997764443  344  34489999999998754

...

>KOG3553|consensus

Probab=99.06  E-value=3.1e-11  Score=87.78  Aligned_cols=71  Identities=28%  Similarity=0.456  Sum_probs=61.1

Q ss_pred             eeEEEEEeecCC----------CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Q psy12310         52 SWGLRIAGGCDL----------DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ  120 (201)
Q Consensus        52 ~~Gf~i~gG~~~----------~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~  120 (201)
                      -+||.|-||.|+          +.+++|.+|.+|||| .|||+.+|.|++|||.+..-++|++|++.|+.. ..+.+.|.
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLVa  114 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLVA  114 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHHH
Confidence            389999999875          458999999999999 899999999999999999999999999998764 55666665


Q ss_pred             eCC
Q psy12310        121 RNP  123 (201)
Q Consensus       121 R~~  123 (201)
                      |.+
T Consensus       115 R~~  117 (124)
T KOG3553|consen  115 RQS  117 (124)
T ss_pred             hhc
Confidence            543

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.01  E-value=5e-09  Score=73.53  Aligned_cols=69  Identities=33%  Similarity=0.522  Sum_probs=58.3

Q ss_pred             ceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeC
Q psy12310         51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRN  122 (201)
Q Consensus        51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~  122 (201)
                      .++||.+.-.   ..+++|..|.+++|| .+||++||+|++|||.++.++++.+....++.. +..+.|++.|.
T Consensus         2 ~~lG~~~~~~---~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYD---DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEc---CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            3577777542   357999999999999 899999999999999999999778887777654 78899999987

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3580|consensus

Probab=98.96  E-value=1.4e-09  Score=100.32  Aligned_cols=87  Identities=24%  Similarity=0.424  Sum_probs=78.1

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      +..+|+|.|+ ...+||+.|.||.+.      .+-++|+.|.||+||++.|+.+|.|+.|||+.+.+..|.-|+..++.+
T Consensus         8 EQhTvTL~kd-p~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG~LQenDrvvMVNGvsMenv~haFAvQqLrks   86 (1027)
T KOG3580|consen    8 EQHTVTLQKD-PKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKS   86 (1027)
T ss_pred             hhheeeeecC-CCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcccccccCCeEEEEcCcchhhhHHHHHHHHHHhh
Confidence            4568999998 678899999999875      235899999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      |....++|.|..+.
T Consensus        87 gK~A~ItvkRprkv  100 (1027)
T KOG3580|consen   87 GKVAAITVKRPRKV  100 (1027)
T ss_pred             ccceeEEeccccee
Confidence            99999999987654

>KOG3552|consensus

Probab=98.81  E-value=1.2e-08  Score=97.64  Aligned_cols=78  Identities=21%  Similarity=0.412  Sum_probs=70.1

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      +.+.|.|+|.   ..|||.++-|    .|++|..|.+|+|+.+.|++||+|++|||.++++.+++.++.+++.+...|.|
T Consensus        55 ~pr~vq~~r~---~~lGFgfvag----rPviVr~VT~GGps~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~l  127 (1298)
T KOG3552|consen   55 EPRQVQLQRN---ASLGFGFVAG----RPVIVRFVTEGGPSIGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNL  127 (1298)
T ss_pred             cchhhhhhcc---ccccceeecC----CceEEEEecCCCCccccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcce
Confidence            3567888875   6688877776    68999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy12310        118 GIQRN  122 (201)
Q Consensus       118 ~v~R~  122 (201)
                      +|.+.
T Consensus       128 tV~qP  132 (1298)
T KOG3552|consen  128 TVCQP  132 (1298)
T ss_pred             EEecc
Confidence            99885

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.80  E-value=2.3e-08  Score=69.98  Aligned_cols=60  Identities=25%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| .+||++||+|++|||.++.++.  +....+..  .+..+.+++.|+++.
T Consensus         9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~--d~~~~l~~~~~g~~v~l~v~r~g~~   71 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPSTTK   71 (79)
T ss_pred             CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHH--HHHHHHhcCCCCCEEEEEEEECCEE
Confidence            457999999999999 8999999999999999999754  44445543  378899999997743

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.74  E-value=1e-07  Score=65.78  Aligned_cols=58  Identities=33%  Similarity=0.462  Sum_probs=47.9

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPP  124 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~  124 (201)
                      .+++|..|.++||| .+||++||+|++|||.++.++  .+....+... +..+.+++.|++.
T Consensus        12 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             cCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCE
Confidence            46899999999999 899999999999999999875  4444455444 6789999998764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1892|consensus

Probab=98.71  E-value=1.5e-07  Score=90.66  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=74.2

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .+..+|+|.|.   .+.|++|+..++-   ..+|||.+|.+|++|  ++.|..||.+|+|||..+-+++.+.|..+|-+.
T Consensus       932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen  932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred             CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence            36889999975   5688888664432   569999999999999  688999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      |..|.|.|...+..
T Consensus      1009 g~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 1009 GNVVHLEVAKQGAI 1022 (1629)
T ss_pred             CCeEEEehhhhhhH
Confidence            99999999766543

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.70  E-value=1e-07  Score=66.08  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=50.6

Q ss_pred             eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +|+.+...   ..+++|..|.++||| .+||++||+|++|||.++.+  ..+.+..+ ..+..+.+++.|++..
T Consensus         3 ~G~~~~~~---~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~~   70 (80)
T cd00990           3 LGLTLDKE---EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDRL   70 (80)
T ss_pred             ccEEEEcc---CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCEE
Confidence            56666321   346899999999999 89999999999999999987  23333222 3567899999997643

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.63  E-value=1.7e-07  Score=66.14  Aligned_cols=58  Identities=22%  Similarity=0.412  Sum_probs=47.7

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPP  124 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~  124 (201)
                      .+++|..|.++||| .+||++||+|++|||.++.++....  ..+..  .+..+.+.+.|++.
T Consensus        24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~--~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLR--RALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHH--HHHHhcCCCCEEEEEEEECCE
Confidence            47899999999999 8999999999999999998765433  33433  37889999998764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=98.59  E-value=8.4e-08  Score=89.80  Aligned_cols=83  Identities=24%  Similarity=0.493  Sum_probs=73.9

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..+.|.|.|.....++-|++.||.+.+.+|||..|.||+.| ..||+.||.|+.|||++.++++...|..++++. ..+.
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLt  613 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLT  613 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEE
Confidence            45568888866678999999999999999999999999999 999999999999999999999999999999876 6677


Q ss_pred             EEEEe
Q psy12310        117 LGIQR  121 (201)
Q Consensus       117 L~v~R  121 (201)
                      |++.-
T Consensus       614 ltvKt  618 (1283)
T KOG3542|consen  614 LTVKT  618 (1283)
T ss_pred             EEEec
Confidence            77653

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.56  E-value=3.4e-07  Score=63.68  Aligned_cols=59  Identities=24%  Similarity=0.426  Sum_probs=46.8

Q ss_pred             CCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++|||..+|++||+|++|||.++.++.  +...++.  ..+..+.+++.|++..
T Consensus         8 ~Gv~V~~V~~~s~A~~gL~~GD~I~~Ing~~v~~~~--~~~~~l~~~~~~~~v~l~v~r~g~~   68 (79)
T cd00986           8 HGVYVTSVVEGMPAAGKLKAGDHIIAVDGKPFKEAE--ELIDYIQSKKEGDTVKLKVKREEKE   68 (79)
T ss_pred             cCEEEEEECCCCchhhCCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence            368999999999993379999999999999998653  3444554  3477899999997754

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3580|consensus

Probab=98.55  E-value=1.9e-07  Score=86.38  Aligned_cols=82  Identities=23%  Similarity=0.410  Sum_probs=72.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..+.|.|.|.+.+..||+++-      ..|||..+...+.|  .++|+.||+||+|||...++|+..++..+|.++..++
T Consensus       198 ~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL  271 (1027)
T KOG3580|consen  198 GPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKL  271 (1027)
T ss_pred             CcceEEEEeeccchhhccccc------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCce
Confidence            456788887777888999873      46999999999987  6899999999999999999999999999999998999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|+|+...
T Consensus       272 ~lvVlRD~~q  281 (1027)
T KOG3580|consen  272 QLVVLRDSQQ  281 (1027)
T ss_pred             EEEEEecCCc
Confidence            9999998754

>KOG3651|consensus

Probab=98.53  E-value=4.1e-07  Score=78.30  Aligned_cols=81  Identities=20%  Similarity=0.335  Sum_probs=71.7

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      -+|+|.++ ...-.|++|-||..++.-++|..|..++||  ++.++.||.|++|||..+.+.+-.++..+|.-+.+.|.+
T Consensus         6 ~~v~ltKD-~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I   84 (429)
T KOG3651|consen    6 ETVELTKD-EKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI   84 (429)
T ss_pred             CcEEEeec-cccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence            36888887 456689999999998888999999999998  688999999999999999999999999999988888888


Q ss_pred             EEEe
Q psy12310        118 GIQR  121 (201)
Q Consensus       118 ~v~R  121 (201)
                      .+-.
T Consensus        85 hyNK   88 (429)
T KOG3651|consen   85 HYNK   88 (429)
T ss_pred             Eehh
Confidence            7654

>KOG3606|consensus

Probab=98.51  E-value=3.1e-07  Score=77.88  Aligned_cols=86  Identities=14%  Similarity=0.245  Sum_probs=72.7

Q ss_pred             EEEEEecCCCCceeEEEEEeec---------CCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGC---------DLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~---------~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      +.|+|.|.+...|+||.|.-|.         +.-.+|||+++.||+.| . +-|...|.|+.|||+.+.+.+.+++-.+|
T Consensus       160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM  239 (358)
T KOG3606|consen  160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM  239 (358)
T ss_pred             hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence            4688888877899999998875         33458999999999999 4 45788999999999999999999999988


Q ss_pred             hCCCCeEEEEEEeCCCC
Q psy12310        109 QSSDTSISLGIQRNPPG  125 (201)
Q Consensus       109 k~~g~~v~L~v~R~~~~  125 (201)
                      -.....+.++|+..+++
T Consensus       240 vANshNLIiTVkPANQR  256 (358)
T KOG3606|consen  240 VANSHNLIITVKPANQR  256 (358)
T ss_pred             hhcccceEEEecccccc
Confidence            77777888888765554

>KOG3571|consensus

Probab=98.49  E-value=8.3e-07  Score=80.74  Aligned_cols=88  Identities=18%  Similarity=0.325  Sum_probs=72.2

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCc-c-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTP-A-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gsp-A-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-  111 (201)
                      ...++|+|.=. ...-||++|+|....  +.+|||..|.+|++ | ++.|.+||.||+||.+++++++.++||..|+.+ 
T Consensus       248 lnIITV~LnMe-~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV  326 (626)
T KOG3571|consen  248 LNIITVTLNME-TVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV  326 (626)
T ss_pred             eeEEEEEeccc-ccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence            36778888654 345599999995422  56899999999998 5 799999999999999999999999999999755 


Q ss_pred             --CCeEEEEEEeCCCC
Q psy12310        112 --DTSISLGIQRNPPG  125 (201)
Q Consensus       112 --g~~v~L~v~R~~~~  125 (201)
                        ..++.|+|-..-+.
T Consensus       327 ~~~gPi~ltvAk~~DP  342 (626)
T KOG3571|consen  327 SRPGPIKLTVAKCWDP  342 (626)
T ss_pred             ccCCCeEEEEeeccCC
Confidence              45789998876654

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.35  E-value=1.9e-06  Score=73.54  Aligned_cols=71  Identities=18%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      +|+...--.+...++.|..+.+++|| ++||++||+|++|||+++.+....  ..++..  .+..+.|+|+|++..
T Consensus       179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~--~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQA--FQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             EeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCeEEEEEEECCEE
Confidence            45554322122358999999999999 999999999999999999986443  334433  467999999998854

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.29  E-value=2.1e-06  Score=77.82  Aligned_cols=61  Identities=25%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||.++.++.+....-.....+..+.|++.|++..
T Consensus       257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~  318 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKE  318 (428)
T ss_pred             CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            57899999999999 89999999999999999998655433222234588999999998765

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.25  E-value=1.7e-06  Score=79.13  Aligned_cols=62  Identities=13%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE  126 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~  126 (201)
                      .+.+|..|.++||| +|||++||+|++|||+++.++......-..+..+.++.+++.|+++..
T Consensus       126 ~~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~  188 (449)
T PRK10779        126 VRPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQ  188 (449)
T ss_pred             CCccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccc
Confidence            34579999999999 999999999999999999988665544333444788999999988753

>PRK10139 serine endoprotease; Provisional

Probab=98.23  E-value=3.7e-06  Score=77.06  Aligned_cols=60  Identities=22%  Similarity=0.344  Sum_probs=49.8

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| ++||++||+|++|||+++.++...  ...+.  ..+..+.++|.|+++.
T Consensus       289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl--~~~l~~~~~g~~v~l~V~R~G~~  351 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAEL--RSRIATTEPGTKVKLGLLRNGKP  351 (455)
T ss_pred             CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHH--HHHHHhcCCCCEEEEEEEECCEE
Confidence            357899999999999 999999999999999999986544  33343  4578999999998865

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.16  E-value=1.6e-05  Score=72.71  Aligned_cols=58  Identities=22%  Similarity=0.333  Sum_probs=48.3

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPPG  125 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~~  125 (201)
                      +++|..|.++||| ++||++||+|++|||.++.++..  ....++. .+..+.+++.|+++.
T Consensus       222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g~~  281 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQT--FVTLVRDNPGKPLALEIERQGSP  281 (449)
T ss_pred             CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCCCCEEEEEEEECCEE
Confidence            5799999999999 99999999999999999987544  3334443 477899999998864

>PRK10942 serine endoprotease; Provisional

Probab=98.16  E-value=5.9e-06  Score=76.10  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||..+.++......-.....+..+.|+|.|+++.
T Consensus       311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~  372 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKP  372 (473)
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence            47899999999999 89999999999999999998755433211223478999999998865

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.16  E-value=4.7e-06  Score=73.95  Aligned_cols=59  Identities=24%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||+++.++...  ...+.  ..+..+.|++.|+++.
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl--~~~l~~~~~g~~v~l~v~R~g~~  339 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEEL--MDRIAETRPGSKVMVTVLRQGKQ  339 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEEEEECCEE
Confidence            47999999999999 899999999999999999886443  33343  4588999999998754

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=98.15  E-value=6.4e-06  Score=73.16  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| .+||++||+|++|||.++.++......-.-...+..+.|++.|+++.
T Consensus       279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~  340 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQ  340 (353)
T ss_pred             CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            57999999999999 89999999999999999987644322111124578999999998754

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.11  E-value=7.6e-06  Score=74.24  Aligned_cols=59  Identities=25%  Similarity=0.393  Sum_probs=49.7

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| .+||++||+|++|||+++.++.+  ..++++.  .+..+.|+|.|++..
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d--~~~~l~~~~~g~~v~l~v~R~g~~  423 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAE--LRKVLDRAKKGGRVALLILRGGAT  423 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEE
Confidence            57999999999999 89999999999999999987644  4455553  478999999998753

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR00054 RIP metalloprotease RseP

Probab=98.10  E-value=8e-06  Score=74.13  Aligned_cols=59  Identities=29%  Similarity=0.420  Sum_probs=49.2

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||+++.++.  +....++. .+..+.+++.|++..
T Consensus       203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g~~  263 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWT--DFVSAVKENPGKSMDIKVERNGET  263 (420)
T ss_pred             cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCceEEEEEECCEE
Confidence            46899999999999 8999999999999999998753  44445544 477899999998865

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10139 serine endoprotease; Provisional

Probab=98.05  E-value=1.1e-05  Score=74.04  Aligned_cols=59  Identities=24%  Similarity=0.352  Sum_probs=49.2

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||.++.++..  ....++.....+.|+|+|++..
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~~~v~l~v~R~g~~  449 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE--MRKVLAAKPAIIALQIVRGNES  449 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCCCeEEEEEEECCEE
Confidence            47899999999999 89999999999999999987644  4455555557899999998753

>PRK10942 serine endoprotease; Provisional

Probab=98.01  E-value=1.6e-05  Score=73.29  Aligned_cols=59  Identities=29%  Similarity=0.524  Sum_probs=49.8

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++|+| .+||++||+|++|||+++.++  .+....++..+..+.|+|.|++..
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g~~  467 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGDSS  467 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence            47999999999999 899999999999999999986  444555655567899999998753

>KOG3605|consensus

Probab=97.71  E-value=4.5e-05  Score=71.49  Aligned_cols=74  Identities=20%  Similarity=0.328  Sum_probs=64.2

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      +..-.++|.+.|++....|||+++-|       +|+++..|+.| .+|+++|.+|+.|||+.|-...|+..+.+|..+=.
T Consensus       733 ~cpPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG  805 (829)
T KOG3605|consen  733 SCPPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG  805 (829)
T ss_pred             cCCCceEEEeecccchhhccceeeCc-------EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence            44457789999988778899999865       78889999999 99999999999999999999999999999987733


Q ss_pred             eE
Q psy12310        114 SI  115 (201)
Q Consensus       114 ~v  115 (201)
                      .+
T Consensus       806 EI  807 (829)
T KOG3605|consen  806 EI  807 (829)
T ss_pred             hh
Confidence            33

>TIGR00054 RIP metalloprotease RseP

Probab=97.68  E-value=7e-05  Score=68.00  Aligned_cols=59  Identities=14%  Similarity=0.066  Sum_probs=46.8

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+.+|..|.++||| +|||++||+|++|||.++.+.......-. ... ..+.+++.|+++.
T Consensus       128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia-~~~-~~v~~~I~r~g~~  187 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIA-DIA-GEPMVEILAEREN  187 (420)
T ss_pred             CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH-hhc-ccceEEEEEecCc
Confidence            57889999999999 99999999999999999998754433222 222 6788888887654

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.62  E-value=0.00027  Score=63.69  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             CCceeEEEEEeecCCCCCcEEEEEC--------CCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEE
Q psy12310         49 RHHSWGLRIAGGCDLDSPIVITKVY--------PGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLG  118 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~~~pi~V~~V~--------~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~  118 (201)
                      ++.+.|+.+..     .+++|....        .++|| .+||++||+|++|||.++.++..  ....++.. +..+.|+
T Consensus        94 gG~~iGI~l~t-----~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~D--L~~iL~~~~g~~V~Lt  166 (402)
T TIGR02860        94 GGQSIGVKLNT-----KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDD--LANLINKAGGEKLTLT  166 (402)
T ss_pred             CCEEEEEEEec-----CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCeEEEE
Confidence            45667777642     356665442        26899 89999999999999999987643  44555544 7889999


Q ss_pred             EEeCCCC
Q psy12310        119 IQRNPPG  125 (201)
Q Consensus       119 v~R~~~~  125 (201)
                      +.|++..
T Consensus       167 V~R~Ge~  173 (402)
T TIGR02860       167 IERGGKI  173 (402)
T ss_pred             EEECCEE
Confidence            9998754

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.55  E-value=9.2e-05  Score=67.22  Aligned_cols=52  Identities=27%  Similarity=0.394  Sum_probs=40.4

Q ss_pred             EEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE-eCCC
Q psy12310         69 ITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ-RNPP  124 (201)
Q Consensus        69 V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~-R~~~  124 (201)
                      |..|.|+|+| ++||++||+|++|||..+.++..  ....+  .+..+.++|. |++.
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D--~~~~l--~~e~l~L~V~~rdGe   55 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLID--YQFLC--ADEELELEVLDANGE   55 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHh--cCCcEEEEEEcCCCe
Confidence            6779999999 99999999999999999987644  22233  2456888886 5553

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG0606|consensus

Probab=97.51  E-value=0.00023  Score=70.34  Aligned_cols=79  Identities=22%  Similarity=0.392  Sum_probs=64.4

Q ss_pred             EEEEecCCCCceeEEEEE------eecCC-CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Q psy12310         41 TVVIKRPNRHHSWGLRIA------GGCDL-DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSD  112 (201)
Q Consensus        41 ~V~L~r~~~~~~~Gf~i~------gG~~~-~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g  112 (201)
                      .+.+.+.+  ..|||.+.      |++++ -.--.|..|.+|||| .+||++||.|+.|||..+.++.|.+.++++-..|
T Consensus       629 pI~i~~~~--~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~g  706 (1205)
T KOG0606|consen  629 PITIHFSG--KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSG  706 (1205)
T ss_pred             ceeeeccc--cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence            36777743  67998774      44442 223588999999999 9999999999999999999999999999999888


Q ss_pred             CeEEEEEEe
Q psy12310        113 TSISLGIQR  121 (201)
Q Consensus       113 ~~v~L~v~R  121 (201)
                      +.|.+.+.-
T Consensus       707 n~v~~~ttp  715 (1205)
T KOG0606|consen  707 NKVTLRTTP  715 (1205)
T ss_pred             CeeEEEeec
Confidence            888877654

>KOG3129|consensus

Probab=97.49  E-value=0.00025  Score=58.31  Aligned_cols=59  Identities=29%  Similarity=0.391  Sum_probs=45.8

Q ss_pred             cEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHH--hCCCCeEEEEEEeCCCC
Q psy12310         67 IVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFF--QSSDTSISLGIQRNPPG  125 (201)
Q Consensus        67 i~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~i--k~~g~~v~L~v~R~~~~  125 (201)
                      ++|..|.|+||| .|||+.||.|+++..+.-.+....+-+..+  ...+..+.+++.|.+..
T Consensus       141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~  202 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK  202 (231)
T ss_pred             EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence            689999999999 999999999999988777665423322233  33388999999998865

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.47  E-value=0.00076  Score=48.42  Aligned_cols=58  Identities=21%  Similarity=0.368  Sum_probs=36.6

Q ss_pred             CcEEEEECCC--------Ccc-cc--CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Q psy12310         66 PIVITKVYPG--------TPA-AA--ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus        66 pi~V~~V~~g--------spA-~a--gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~  124 (201)
                      ...|.+|++|        ||. +.  .+++||+|++|||+++..-..-.. -+...++.+|.|+|.+.+.
T Consensus        13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~-lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYR-LLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHH-HHHTTTTSEEEEEEE-STT
T ss_pred             EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHH-HhcccCCCEEEEEEecCCC
Confidence            5778888887        454 33  567999999999999986544332 2445669999999998764

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.43  E-value=0.00085  Score=52.08  Aligned_cols=74  Identities=16%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             CceeEEEEEeecCC---CCCcEEEEECCCCcc-ccCCCC-CCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCC
Q psy12310         50 HHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAELKR-GDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNP  123 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~agL~~-GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~  123 (201)
                      .+.+|++++--...   ...+-|.+|.|+||| .|||++ .|.|+.+++..+.+.+..  ...++. .+..+.|.|....
T Consensus        25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l--~~~v~~~~~~~l~L~Vyns~  102 (138)
T PF04495_consen   25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDL--FELVEANENKPLQLYVYNSK  102 (138)
T ss_dssp             SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHH--HHHHHHTTTS-EEEEEEETT
T ss_pred             CCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHH--HHHHHHcCCCcEEEEEEECC
Confidence            35688888664432   446899999999999 899999 599999999888865444  344544 4889999998654


Q ss_pred             CC
Q psy12310        124 PG  125 (201)
Q Consensus       124 ~~  125 (201)
                      ..
T Consensus       103 ~~  104 (138)
T PF04495_consen  103 TD  104 (138)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=97.42  E-value=0.00034  Score=60.13  Aligned_cols=45  Identities=27%  Similarity=0.320  Sum_probs=35.7

Q ss_pred             ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310         79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG  125 (201)
Q Consensus        79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~  125 (201)
                      ++||++||++++|||.++.+..+  +.+++...  ...++|+|+|+|..
T Consensus       222 ~~GLq~GDva~sING~dL~D~~q--a~~l~~~L~~~tei~ltVeRdGq~  268 (276)
T PRK09681        222 ASGFKEGDIAIALNQQDFTDPRA--MIALMRQLPSMDSIQLTVLRKGAR  268 (276)
T ss_pred             HcCCCCCCEEEEeCCeeCCCHHH--HHHHHHHhccCCeEEEEEEECCEE
Confidence            58999999999999999987644  33444322  58999999999864

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00055  Score=60.34  Aligned_cols=62  Identities=26%  Similarity=0.341  Sum_probs=50.3

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.+++|| ++|++.||+|+++||..+.+.........-...+..+.+.+.|+++.
T Consensus       269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~  331 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKE  331 (347)
T ss_pred             CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEE
Confidence            346899999999999 99999999999999999998655443322233588999999999654

>KOG0609|consensus

Probab=97.04  E-value=0.003  Score=58.39  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ...|.+.|. ...++|..+.--..  ..++|.+|..|+.|  .+-|..||.|+.|||..+.+..-.+...+++.+...++
T Consensus       123 vriv~i~k~-~~eplG~Tik~~e~--~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it  199 (542)
T KOG0609|consen  123 VRIVRIVKN-TGEPLGATIRVEED--TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT  199 (542)
T ss_pred             eEEEEEeec-CCCccceEEEeccC--CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence            455677665 46889998875433  37999999999998  57799999999999999999999999999998888888


Q ss_pred             EEEEeC
Q psy12310        117 LGIQRN  122 (201)
Q Consensus       117 L~v~R~  122 (201)
                      +.|...
T Consensus       200 fkiiP~  205 (542)
T KOG0609|consen  200 FKIIPS  205 (542)
T ss_pred             EEEccc
Confidence            887654

>KOG3605|consensus

Probab=96.88  E-value=0.0026  Score=60.06  Aligned_cols=84  Identities=25%  Similarity=0.357  Sum_probs=64.4

Q ss_pred             EEEEEecCCCCceeEEEEEe-ecCCCC-CcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC--C
Q psy12310         40 FTVVIKRPNRHHSWGLRIAG-GCDLDS-PIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSD--T  113 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~g-G~~~~~-pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g--~  113 (201)
                      +.|.+.|- .+..||..|+- |-..-. .++|.....++|| . +.|-.||+|++|||..+-++...-+...||+..  +
T Consensus       647 KEVvv~K~-kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT  725 (829)
T KOG3605|consen  647 KEVVLEKH-KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQT  725 (829)
T ss_pred             ceeeeecc-cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccc
Confidence            34555554 45788887754 222222 3688899999998 4 679999999999999999999999988998773  5


Q ss_pred             eEEEEEEeCCC
Q psy12310        114 SISLGIQRNPP  124 (201)
Q Consensus       114 ~v~L~v~R~~~  124 (201)
                      .|+|+|.+...
T Consensus       726 ~VkltiV~cpP  736 (829)
T KOG3605|consen  726 AVKLNIVSCPP  736 (829)
T ss_pred             eEEEEEecCCC
Confidence            78888887653

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.59  E-value=0.0041  Score=57.50  Aligned_cols=63  Identities=29%  Similarity=0.396  Sum_probs=44.0

Q ss_pred             eeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        52 ~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+|..+  +.+ +....|..|.++||| .|||.+||.|++|||..-. +..       -.++..+.+.+.|.+.-
T Consensus       452 ~LGl~v--~~~-~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~-l~~-------~~~~d~i~v~~~~~~~L  515 (558)
T COG3975         452 YLGLKV--KSE-GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ-LDR-------YKVNDKIQVHVFREGRL  515 (558)
T ss_pred             ccceEe--ccc-CCeeEEEecCCCChhHhccCCCccEEEEEcCcccc-ccc-------cccccceEEEEccCCce
Confidence            355554  333 345799999999999 9999999999999999111 111       12356777777776543

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.53  E-value=0.007  Score=52.84  Aligned_cols=60  Identities=12%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             CcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         66 PIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        66 pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ++++..|..++||..-|..||.|.+|||.++.+.......-.-+..|..|++...|.+..
T Consensus       131 gvyv~~v~~~~~~~gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~  190 (342)
T COG3480         131 GVYVLSVIDNSPFKGKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNET  190 (342)
T ss_pred             eEEEEEccCCcchhceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEeccCC
Confidence            688999999999988899999999999999987654444333345599999999985443

>KOG3532|consensus

Probab=96.44  E-value=0.0098  Score=56.66  Aligned_cols=69  Identities=23%  Similarity=0.374  Sum_probs=51.0

Q ss_pred             CCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310         49 RHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR  121 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R  121 (201)
                      .+.+.|+..-...  ..-+.|..|.+++|| ++.+++||++++|||.++..  ..++.+.++.....|...+.|
T Consensus       384 ~s~~ig~vf~~~~--~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  384 VSSPIGLVFDKNT--NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ccCceeEEEecCC--ceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence            4455665443211  346899999999999 99999999999999999985  466777888775555555444

>KOG1320|consensus

Probab=96.38  E-value=0.0092  Score=54.91  Aligned_cols=58  Identities=19%  Similarity=0.399  Sum_probs=47.2

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG  125 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~  125 (201)
                      .++|..|.+++++ ..++++||+|++|||+++.++.|.  ..+++.+  +++|.+..+|..+.
T Consensus       399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l--~~~i~~~~~~~~v~vl~~~~~e~  459 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHL--YELIEECSTEDKVAVLDRRSAED  459 (473)
T ss_pred             EEEEEEeccCCCcccccccCCCEEEEECCEEeechHHH--HHHHHhcCcCceEEEEEecCccc
Confidence            4789999999999 899999999999999999998775  4456555  45787777666544

>KOG3938|consensus

Probab=96.38  E-value=0.007  Score=51.69  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=63.6

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCC-cEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSP-IVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~p-i~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--  111 (201)
                      .+...|.+.|+.  ..||+.|.-   .+.+ .||..|.+||.- . -.+++||.|-+|||..+-++.|-++..++|..  
T Consensus       125 Gq~kEv~v~Kse--dalGlTITD---NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r  199 (334)
T KOG3938|consen  125 GQAKEVEVVKSE--DALGLTITD---NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR  199 (334)
T ss_pred             CcceeEEEEecc--cccceEEee---CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc
Confidence            356678888764  569998853   2222 599999999997 3 57999999999999999999999999999866  


Q ss_pred             CCeEEEEEEeC
Q psy12310        112 DTSISLGIQRN  122 (201)
Q Consensus       112 g~~v~L~v~R~  122 (201)
                      |...+|.+...
T Consensus       200 ge~ftlrLieP  210 (334)
T KOG3938|consen  200 GETFTLRLIEP  210 (334)
T ss_pred             CCeeEEEeecc
Confidence            66666666544

>KOG1421|consensus

Probab=96.22  E-value=0.0076  Score=57.40  Aligned_cols=57  Identities=25%  Similarity=0.426  Sum_probs=46.0

Q ss_pred             cEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHH-hCCCCeEEEEEEeCCCC
Q psy12310         67 IVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFF-QSSDTSISLGIQRNPPG  125 (201)
Q Consensus        67 i~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~i-k~~g~~v~L~v~R~~~~  125 (201)
                      ++|..|.++|||...|++||.+++||+.-+.++.  .+.+.+ ++.|..+.|+|+|++..
T Consensus       305 LvV~~vL~~gpa~k~Le~GDillavN~t~l~df~--~l~~iLDegvgk~l~LtI~Rggqe  362 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKKLEPGDILLAVNSTCLNDFE--ALEQILDEGVGKNLELTIQRGGQE  362 (955)
T ss_pred             EEEEEeccCCchhhccCCCcEEEEEcceehHHHH--HHHHHHhhccCceEEEEEEeCCEE
Confidence            6899999999997789999999999977766542  233344 45599999999999874

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=96.19  E-value=0.025  Score=47.73  Aligned_cols=62  Identities=29%  Similarity=0.356  Sum_probs=44.7

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG  125 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~  125 (201)
                      .+-+||++.-|++            ++.- ..||+.||+.++||+.++.+-  +++..++...  -..+.|+|.|+|..
T Consensus       204 eki~Gyr~~pgkd------------~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~r  268 (275)
T COG3031         204 EKIEGYRFEPGKD------------GSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKR  268 (275)
T ss_pred             CceEEEEecCCCC------------cchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCcc
Confidence            3668888776665            3344 689999999999999998763  3333344332  47899999999865

>KOG1738|consensus

Probab=95.33  E-value=0.039  Score=52.02  Aligned_cols=71  Identities=21%  Similarity=0.374  Sum_probs=58.5

Q ss_pred             CCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310         49 RHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR  121 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R  121 (201)
                      .+.+||+.|..-.+  .+.+|+.+.+++||  ...|..||.|++||+..+.++.+.-.+..++....-|.+++..
T Consensus       211 p~eglg~~I~Ssyd--g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK  283 (638)
T KOG1738|consen  211 PSEGLGLYIDSSYD--GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK  283 (638)
T ss_pred             cccCCceEEeeecC--CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence            35779999977655  67899999999999  4789999999999999999999998888887775555555543

>smart00735 ZM ZASP-like motif

Probab=94.62  E-value=0.014  Score=32.26  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             cccCCCcccchHHHHHHHHHh
Q psy12310        175 QAVASPFELSSEHDLNYVIKE  195 (201)
Q Consensus       175 ~qf~~p~~~~s~~~i~~~~~~  195 (201)
                      +|||+|+++|+.+++++.+..
T Consensus         5 ~qyn~P~glys~~n~~~~l~~   25 (26)
T smart00735        5 KQYNSPIGLYSSENIAETLQG   25 (26)
T ss_pred             cccCCCCCCCCcccHHHhhcc
Confidence            799999999999999887653

Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.

>KOG1703|consensus

Probab=94.59  E-value=0.018  Score=53.25  Aligned_cols=74  Identities=35%  Similarity=0.646  Sum_probs=67.3

Q ss_pred             eeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Q psy12310         52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE  126 (201)
Q Consensus        52 ~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~  126 (201)
                      +|||++.+| ++..++.+..+.+++.+ .+.+.++|.|..+++..-..+.|.++...++..+..+.+.+.|.....
T Consensus         9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   83 (479)
T KOG1703|consen    9 PWGFRLQGG-DFLQPLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSETSS   83 (479)
T ss_pred             Cceeeeccc-ccccccceeccCCCCccccccccccccccccccccccccccccccCcccccccccccccccccccc
Confidence            799998887 77889999999999999 899999999999999999999999999888888999999999865443

>PF12812 PDZ_1: PDZ-like domain

Probab=92.19  E-value=0.23  Score=34.69  Aligned_cols=44  Identities=23%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      .+.++.....|+++ +.++..|-+|.+|||+++.++..  .++.++.
T Consensus        30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~--f~~vvk~   74 (78)
T PF12812_consen   30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDD--FIKVVKK   74 (78)
T ss_pred             CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHH--HHHHHHh
Confidence            34677778889999 56699999999999999998644  4444554

>KOG4407|consensus

Probab=90.84  E-value=0.26  Score=50.37  Aligned_cols=86  Identities=10%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC-------------------------CCCcEEEEECCCCcc-ccCCCCCCEE
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL-------------------------DSPIVITKVYPGTPA-AAELKRGDII   88 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-------------------------~~pi~V~~V~~gspA-~agL~~GD~I   88 (201)
                      .+...+.|++.|+  +++|||.|+--.-+                         ..-+++..+..++++ .+|+..||.|
T Consensus        43 S~~~~~~V~~rR~--nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v  120 (1973)
T KOG4407|consen   43 SIQPKLIVIRRRP--NQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGV  120 (1973)
T ss_pred             cCCCceEEEEecC--CCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccce
Confidence            3445678899886  58999988652211                         113577888888888 9999999999


Q ss_pred             EEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310         89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP  123 (201)
Q Consensus        89 l~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~  123 (201)
                      ..|+|..+.+-+ ....-+++...+.+.+.|.-.+
T Consensus       121 ~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n~  154 (1973)
T KOG4407|consen  121 AGITGLEPTSPT-SLPPYQVKAMETIFIKEVQANG  154 (1973)
T ss_pred             eeecccccCCCc-cccHHHHhhhhhhhhhhhccCC
Confidence            999999988766 3333455555555555554443

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=88.69  E-value=1.2  Score=39.31  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=40.1

Q ss_pred             EEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe---EEEEEEe
Q psy12310         68 VITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS---ISLGIQR  121 (201)
Q Consensus        68 ~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~---v~L~v~R  121 (201)
                      .+..+...++| .+++++||+|+++|+.++.+++.-... .....+..   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRL-LVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHH-HHhccCCcccceEEEEEe
Confidence            45578999999 999999999999999999987544322 22333444   7788888

>KOG3834|consensus

Probab=88.63  E-value=0.92  Score=41.35  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=43.2

Q ss_pred             CcEEEEECCCCcc-ccCCCCC-CEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRG-DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP  123 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~G-D~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~  123 (201)
                      +..|.+|.++|+| .+||.+= |.|++|||..+..- .+....+++..-..|+|+|.-..
T Consensus        16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~k   74 (462)
T KOG3834|consen   16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSK   74 (462)
T ss_pred             eEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecc
Confidence            5678899999999 8998875 99999999999753 33344456655556999987543

>KOG0792|consensus

Probab=87.97  E-value=0.5  Score=47.32  Aligned_cols=62  Identities=24%  Similarity=0.506  Sum_probs=54.9

Q ss_pred             CceeEEEEEeecCCC-----CCcEEEEEC-------------CCCcc-c--cCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         50 HHSWGLRIAGGCDLD-----SPIVITKVY-------------PGTPA-A--AELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~-----~pi~V~~V~-------------~gspA-~--agL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      .+.+||-+.||.+..     .|..+.+|.             |+++| .  -.+..||.+++|||.++....|+..+.+|
T Consensus       715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i  794 (1144)
T KOG0792|consen  715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI  794 (1144)
T ss_pred             CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence            577999999999875     788999999             88888 4  47999999999999999999999999888


Q ss_pred             hCC
Q psy12310        109 QSS  111 (201)
Q Consensus       109 k~~  111 (201)
                      +.+
T Consensus       795 rs~  797 (1144)
T KOG0792|consen  795 RSP  797 (1144)
T ss_pred             hhh
Confidence            766

>KOG4371|consensus

Probab=87.63  E-value=0.85  Score=45.79  Aligned_cols=82  Identities=22%  Similarity=0.456  Sum_probs=59.9

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.+.|.+.|..  ..+|..+..-..   .+.|+... .-+|  .-.|..||.++.+||+.+++..|.+++.++++-+..|
T Consensus      1147 ~~i~~~~~r~~--~~l~~~~a~~~~---~~~~~~~~-~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1147 RVIDVELDRNE--GSLGVQIASLSG---RVCIKQLT-SEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRV 1220 (1332)
T ss_pred             ccccccCCCCC--CCCCceeccCcc---ceehhhcc-cCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceE
Confidence            45567777653  557776653211   12333322 2234  5689999999999999999999999999999999999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|-|+|....
T Consensus      1221 ~~~~~r~~~~ 1230 (1332)
T KOG4371|consen 1221 VLGVQRPPPA 1230 (1332)
T ss_pred             EEEeecCCcc
Confidence            9999998764

>KOG2921|consensus

Probab=84.63  E-value=0.9  Score=41.12  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCC
Q psy12310         64 DSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDL   99 (201)
Q Consensus        64 ~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~   99 (201)
                      +.++.|..|...||+  .-||.+||+|.++||.++...
T Consensus       219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v  256 (484)
T KOG2921|consen  219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV  256 (484)
T ss_pred             CceEEEEeccccCCCcCcccCCccceEEecCCcccCCH
Confidence            457899999999999  469999999999999999874

>KOG4407|consensus

Probab=80.45  E-value=0.77  Score=47.14  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=48.7

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR  121 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R  121 (201)
                      -+||..|.+.+|| -+.|+.||.++.||..++.++...+++.++++.--.+.|.+..
T Consensus       144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P  200 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP  200 (1973)
T ss_pred             hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence            4699999999999 8999999999999999999999999999998775555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
1v5l_A	103	Solution Structure Of Pdz Domain Of Mouse Alpha-Act		1e-08
1rgw_A	85	Solution Structure Of Zasp's Pdz Domain Length = 85		6e-08
1wjl_A	90	Solution Structure Of Pdz Domain Of Mouse Cypher Pr		6e-08
2pkt_A	91	Crystal Structure Of The Human Clp-36 (Pdlim1) Boun		3e-07
2eeg_A	94	Solution Structure Of Pdz Domain Of Pdz And Lim Dom		6e-07
1vb7_A	94	Solution Structure Of The Pdz Domain Of Pdz And Lim		8e-07
2q3g_A	89	Structure Of The Pdz Domain Of Human Pdlim7 Bound T		9e-07
2v1w_A	90	Crystal Structure Of Human Lim Protein Ril (Pdlim4)		1e-06
3pdv_A	89	Structure Of The Pdlim2 Pdz Domain In Complex With		2e-05
2uzc_A	88	Structure Of Human Pdlim5 In Complex With The C-Ter		2e-05
2pa1_A	87	Structure Of The Pdz Domain Of Human Pdlim2 Bound T		2e-05
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		4e-05
1wf7_A	103	Solution Structure Of The Pdz Domain Of Enigma Homo		5e-05
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		6e-05
2cs5_A	119	Solution Structure Of Pdz Domain Of Protein Tyrosin		6e-05
3nfk_A	107	Crystal Structure Of The Ptpn4 Pdz Domain Complexed		6e-05
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		7e-05
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		7e-05
2vph_A	100	Crystal Structure Of The Human Protein Tyrosine Pho		5e-04
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		5e-04
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		6e-04
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		7e-04
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		7e-04

>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2 Associated Lim Protein Length = 103

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGT-PAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R++GG D + P+VIT++ PG+  AAA L  GD+I  I  + +  + H DA +  +++
Sbjct: 17  WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 112 DTSISLGIQR 121
              + L I R
Sbjct: 77  SYQLCLKIDR 86

>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain Length = 85

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++  + H +A N  +S+
Sbjct: 13  WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 112 DTSISLGIQRN 122
             ++SL +Q++
Sbjct: 73  SYNLSLTLQKS 83

>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++  + H +A N  +S+
Sbjct: 20  WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 79
Query: 112 DTSISLGIQRN 122
             ++SL +Q++
Sbjct: 80  SYNLSLTLQKS 90

>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To The C-Terminal Peptide Of Human Alpha-Actinin-1 Length = 91

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D + P+ I++V PG+ AA A L  GD+I  I   ++ ++ H +A N  +  
Sbjct: 15  WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGC 74
Query: 112 DTSISLGIQRN 122
             +++L + R+
Sbjct: 75  TDNLTLTVARS 85

>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain Protein Length = 94

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           SG    PH    +V ++ P+    WG R+ GG D  +P+ I++V+ G+ AA A L  GD+
Sbjct: 3   SGSSGMPH----SVTLRGPS---PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDL 55
Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           I+ I    +  + H +A N  +     ++L +   P
Sbjct: 56  IQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGP 91

>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain 2 Length = 94

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG RI+GG D  +PI++TKV   G   AA+L+ GDII  I    + ++ H +A +  + S
Sbjct: 18  WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 112 DTSISLGIQRN 122
            + + L + R+
Sbjct: 78  ASPLRLQLDRS 88

>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C- Terminal Extension From Human Beta-Tropomyosin Length = 89

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYD 95
            ++F VV++ P     WG R+ GG D + P+ I+++ PG  AA A +  GD +  I   +
Sbjct: 2   MDSFKVVLEGP---APWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGEN 58
Query: 96  SRDLRHKDATNFFQSSDTSISLGIQR 121
           +  L H +A N  ++    +SLG+ R
Sbjct: 59  AGSLTHIEAQNKIRACGERLSLGLSR 84

>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz Domain Bound To The C-Terminal Peptide Of Human Alpha- Actinin-1 Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D  +P+ I++V+ G+ AA A L  GD+I+ I    +  + H +A N  +  
Sbjct: 14  WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 73
Query: 112 DTSISLGIQRNPPGE 126
              ++L + R P GE
Sbjct: 74  HDHLTLSVSR-PEGE 87

>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The C-Terminal 6- Peptide Extension Of Ns1 Length = 89

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG RI GG D  +PI++TKV   G    A+L+ GDII  I    +  + H +A +  + S
Sbjct: 13  WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 72
Query: 112 DTSISLGIQRN 122
            + + L + R+
Sbjct: 73  PSPLRLQLDRS 83

>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal Peptide Of Human Alpha-Actinin-1 Length = 88

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D + P+ I+ +  G  AA A ++ GD++  I   +++ + H +A N  +  
Sbjct: 15  WGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74
Query: 112 DTSISLGIQR 121
             S+++ +QR
Sbjct: 75  TGSLNMTLQR 84

>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A C-Terminal Extension From Human Beta-Tropomyosin Length = 87

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG RI GG D  +PI++TKV   G    A+L+ GDII  I    +  + H +A +  + S
Sbjct: 14  WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73
Query: 112 DTSISLGIQR 121
            + + L + R
Sbjct: 74  PSPLRLQLDR 83

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 43  VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLR 100
           V++ P      G  I GG + +SPI I++V PG  A     LKRGD +  +        +
Sbjct: 8   VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 101 HKDATNFFQSSDTSISLGIQRNP 123
           H+ A    +++  S+ L ++  P
Sbjct: 68  HEKAVELLKAAQGSVKLVVRSGP 90

>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue Protein Length = 103

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           WG R+ GG D + P+ I+ +  G  A+ A ++ GD++  I    ++ + H +A N  ++ 
Sbjct: 17  WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76
Query: 112 DTSISLGIQR 121
             S+++ +QR
Sbjct: 77  TGSLNMTLQR 86

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50  HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNF 107
           H   G+ I GG +   PI+I++++PG PA     L  GD I  +   + RD +HK+A   
Sbjct: 20  HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 79
Query: 108 FQSSDTSISL 117
                  I  
Sbjct: 80  LSQQRGEIEF 89

>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine Phosphatase, Non-Receptor Type 4 Length = 119

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA---AAELKRGDIIRKI 91
           PH N   + +K P+ +  +G  + GG D   P+++++V PGTPA      L  GD +  I
Sbjct: 12  PHDNLVLIRMK-PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70
Query: 92  GDYDSRDLRHKDATNFFQSS 111
              D  +  H     F ++S
Sbjct: 71  NGRDIAEHTHDQVVLFIKAS 90

>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The C- Terminus Of A Rabies Virus G Protein Length = 107

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA---AAE 81
           P + +     PH N   + +K P+ +  +G  + GG D   P+++++V PGTPA      
Sbjct: 4   PEKPTPNGGIPHDNLVLIRMK-PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 62
Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           L  GD +  I   D  +  H     F ++S
Sbjct: 63  LNEGDQVVLINGRDIAEHTHDQVVLFIKAS 92

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50  HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNF 107
           H   G+ I GG +   PI+I++++PG PA     L  GD I  +   + RD +HK+A   
Sbjct: 13  HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 72
Query: 108 FQSSDTSISL 117
                  I  
Sbjct: 73  LSQQRGEIEF 82

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50  HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNF 107
           H   G+ I GG +   PI+I++++PG PA     L  GD I  +   + RD +HK+A   
Sbjct: 38  HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 97
Query: 108 FQSSDTSISL 117
                  I  
Sbjct: 98  LSQQRGEIEF 107

>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase, Non-Receptor Type 4, Pdz Domain Length = 100

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA---AAELKRGDIIRKIGD 93
            +   ++  +P+ +  +G  + GG D   P+++++V PGTPA      L  GD +  I  
Sbjct: 2   MDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 61
Query: 94  YDSRDLRHKDATNFFQSS 111
            D  +  H     F ++S
Sbjct: 62  RDIAEHTHDQVVLFIKAS 79

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42  VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
           + ++R N     G  IAGG D      D  I ITK+ PG  AA    L+  D I  + + 
Sbjct: 16  ITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 73
Query: 95  DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
           D R++ H  A    + + + + L + +R PP EK
Sbjct: 74  DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 107

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42  VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
           + ++R N     G  IAGG D      D  I ITK+ PG  AA    L+  D I  + + 
Sbjct: 9   ITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 66
Query: 95  DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
           D R++ H  A    + + + + L + +R PP EK
Sbjct: 67  DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 100

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42  VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
           + ++R N     G  IAGG D      D  I ITK+ PG  AA    L+  D I  + + 
Sbjct: 6   ITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 63
Query: 95  DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
           D R++ H  A    + + + + L + +R PP EK
Sbjct: 64  DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 97

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42  VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
           + ++R N     G  IAGG D      D  I ITK+ PG  AA    L+  D I  + + 
Sbjct: 63  ITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 120
Query: 95  DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
           D R++ H  A    + + + + L + +R PP EK
Sbjct: 121 DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	6e-23
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	9e-23
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-22
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-22
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	2e-22
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-22
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	2e-21
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	4e-21
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	4e-21
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-16
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-16
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	3e-16
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-16
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-16
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	7e-16
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	7e-16
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-15
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	1e-15
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-15
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-15
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-15
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	3e-15
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-15
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	3e-15
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-15
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	4e-15
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	5e-15
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	6e-15
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	6e-15
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-12
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-14
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-14
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	3e-14
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-14
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	3e-14
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-14
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	3e-14
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-14
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	6e-14
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	9e-14
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	9e-14
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-13
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-13
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-13
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-10
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-13
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	4e-13
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-13
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-13
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	6e-13
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	6e-13
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	7e-13
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	7e-13
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	9e-13
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-12
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-12
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-10
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-12
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-12
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-12
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-12
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-12
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	2e-12
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-12
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	3e-12
2fne_A	117	Multiple PDZ domain protein; structural protein, s	3e-12
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	3e-12
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-12
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	4e-12
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	4e-12
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	4e-12
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	5e-12
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	6e-12
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	6e-12
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	7e-12
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	8e-12
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-11
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	2e-11
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-11
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-11
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-11
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	2e-11
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	2e-11
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-11
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-11
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	3e-11
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	3e-11
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-11
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	3e-11
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	4e-11
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	5e-11
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	7e-11
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	7e-11
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	8e-11
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	8e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	1e-10
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	1e-10
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-08
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-10
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	3e-10
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	4e-10
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-10
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	5e-10
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-10
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	8e-10
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	1e-09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-09
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	1e-09
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	5e-09
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	5e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	7e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-08
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	8e-09
3khf_A	99	Microtubule-associated serine/threonine-protein ki	9e-09
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	1e-08
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-08
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-08
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	2e-08
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-08
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	3e-08
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-08
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-08
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	8e-08
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-07
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-07
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	2e-07
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-07
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-07
2ego_A	96	General receptor for phosphoinositides 1- associat	3e-07
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	4e-07
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	5e-07
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	5e-07
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	8e-07
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	8e-07
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	9e-07
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	9e-07
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-06
3k50_A	403	Putative S41 protease; structural genomics, joint	1e-06
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	1e-06
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	1e-06
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-06
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	2e-06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	5e-06
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	7e-06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	7e-06
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	9e-06
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-05
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	1e-05
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	1e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	2e-05
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	3e-05
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-05
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-04
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	4e-05
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	6e-05
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	8e-05
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	9e-05
2kl1_A	94	YLBL protein; structure genomics, structural genom	1e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	1e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	1e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	4e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	2e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	7e-04
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	2e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	2e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	7e-04
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	2e-04
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	3e-04
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	4e-04
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	4e-04
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	4e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	6e-04

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 87.0 bits (216), Expect = 6e-23
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
           ++F VV++ P     WG R+ GG D + P+ I+++ PG  AA A +  GD +  I   ++
Sbjct: 3   DSFKVVLEGPA---PWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENA 59

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRNPPG 125
             L H +A N  ++    +SLG+ R    
Sbjct: 60  GSLTHIEAQNKIRACGERLSLGLSRAITS 88

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 86.5 bits (215), Expect = 9e-23
 Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRD 98
           ++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++  
Sbjct: 3   YSVTLTGPGP---WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDT 59

Query: 99  LRHKDATNFFQSSDTSISLGIQRNP 123
           + H +A N  +S+  ++SL +Q++ 
Sbjct: 60  MTHLEAQNKIKSASYNLSLTLQKSK 84

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 86.2 bits (214), Expect = 1e-22
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             TV +  P     WG RI GG D  +PI++TKV     A  A+L+ GDII  I    + 
Sbjct: 3   ALTVDVAGPA---PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAE 59

Query: 98  DLRHKDATNFFQSSDTSISLGIQR 121
            + H +A +  + S + + L + R
Sbjct: 60  GMLHAEAQSKIRQSPSPLRLQLDR 83

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 86.2 bits (214), Expect = 1e-22
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             TV +  P     WG RI+GG D  +PI++TKV     A  A+L+ GDII  I    + 
Sbjct: 7   GLTVDVAGPA---PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAE 63

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPP 124
           ++ H +A +  + S + + L + R+  
Sbjct: 64  NMLHAEAQSKIRQSASPLRLQLDRSSG 90

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 86.2 bits (214), Expect = 2e-22
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
             +V ++ P+    WG R+ GG D  +P+ I++V+ G+ AA A L  GD+I+ I    + 
Sbjct: 9   PHSVTLRGPS---PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTE 65

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNP 123
            + H +A N  +     ++L +   P
Sbjct: 66  LMTHLEAQNRIKGCHDHLTLSVSSGP 91

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 85.0 bits (211), Expect = 3e-22
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
           + ++V +  P     WG R+ GG D + P+ I+ +  G  AA A ++ GD++  I   ++
Sbjct: 3   SNYSVSLVGPA---PWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINA 59

Query: 97  RDLRHKDATNFFQSSDTSISLGIQR 121
           + + H +A N  +    S+++ +QR
Sbjct: 60  QGMTHLEAQNKIKGCTGSLNMTLQR 84

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 83.9 bits (208), Expect = 2e-21
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
           +  VV+  P     WG R++GG D + P+VIT++ PG+ AA A L  GD+I  I  + + 
Sbjct: 6   SGNVVLPGPA---PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTE 62

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
            + H DA +  +++   + L I R       
Sbjct: 63  SMTHADAQDRIKAASYQLCLKIDRAETRLWS 93

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 82.4 bits (204), Expect = 4e-21
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
            T  + ++ P     WG R+ GG D + P+ I++V PG+ AA A L  GD+I  I   ++
Sbjct: 3   TTQQIDLQGPG---PWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENT 59

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRNPP 124
            ++ H +A N  +    +++L + R+  
Sbjct: 60  SNMTHLEAQNRIKGCTDNLTLTVARSEH 87

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 82.8 bits (205), Expect = 4e-21
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
           + +V +  P     WG R+ GG D + P+ I+ +  G  A+ A ++ GD++  I    ++
Sbjct: 6   SGSVSLVGPA---PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQ 62

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
            + H +A N  ++   S+++ +QR     K     S
Sbjct: 63  GMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 70.4 bits (173), Expect = 2e-16
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
           +  V + + +     G  I GG + +SPI I++V PG  A     LKRGD +  +     
Sbjct: 6   SGVVELPKTDE--GLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRNPP 124
              +H+ A    +++  S+ L ++  P 
Sbjct: 64  EGEQHEKAVELLKAAQGSVKLVVRSGPS 91

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 70.5 bits (173), Expect = 2e-16
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRD 98
            V++ + + H   G+ I GG +   PI+I++++PG PA     L  GD I  +   + RD
Sbjct: 12  KVLLLKED-HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70

Query: 99  LRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
            +HK+A          I   +         
Sbjct: 71  TKHKEAVTILSQQRGEIEFEVVYVALEHHH 100

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 70.0 bits (172), Expect = 3e-16
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGD 86
           SG   Q     FTV +++  +   +G  I GG +    + + ++    PA     ++ GD
Sbjct: 3   SGSSGQDFD-YFTVDMEKGAK--GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGD 59

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            I +I    +RD+ H  A    +S    + L ++R   
Sbjct: 60  QIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 26  TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKR 84
           +  SG           V +K+P      G  I GG      I I+KV P + A    L+ 
Sbjct: 3   SGSSGNNELTQFLPRIVTLKKPP-GAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQE 61

Query: 85  GDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           GD +  + D D +D+ H  A    +++   IS+ ++    
Sbjct: 62  GDQVLAVNDVDFQDIEHSKAVEILKTA-REISMRVRFFSG 100

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 69.3 bits (170), Expect = 4e-16
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDL 99
            TV I +      +G  I+       P+ +  V  G  A  +L  GD I ++ +  + DL
Sbjct: 10  HTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDL 65

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAA 130
             + A +  + ++ S+S+ + R       + 
Sbjct: 66  SWERAVDILREAEDSLSITVVRCTSSGPSSG 96

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 69.3 bits (170), Expect = 7e-16
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIG 92
              + +TV ++R  +   +G  + GG + +  + + ++    PA     ++ GD I +I 
Sbjct: 21  QSMDFYTVELERGAK--GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEIN 78

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
              +++++H  A    ++    + L ++R   
Sbjct: 79  GETTKNMKHSRAIELIKNGGRRVRLFLKRGET 110

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 69.8 bits (171), Expect = 7e-16
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 31  KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDII 88
            P++         +++ +R   +G  + GG + D  + I  +    PAA +  ++ GD+I
Sbjct: 11  NPSELKGKFIHTKLRKSSR--GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVI 68

Query: 89  RKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPGEKKA-ASGSRSVTPLPIVD 143
             + D       H      FQS     S+ L + R  P         +  VT + I+D
Sbjct: 69  VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAILD 126

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--LKRGDIIRKIG 92
           T  V + +     ++G  I GG         P+VIT V PG PA  E  +K GD +  + 
Sbjct: 4   TVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
                   H +A +  +      +L I+ +  
Sbjct: 62  GIRLLGTTHAEAMSILKQCGQEAALLIEYDVS 93

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.5 bits (168), Expect = 1e-15
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDII 88
           G       +    V    +     G  + GG +    I ++KV  G+ A    L  GD I
Sbjct: 1   GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKI 60

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
            ++            A     SS   + + ++R   G
Sbjct: 61  TEVNGLSLESTTMGSAVKVLTSSSR-LHMMVRRMGSG 96

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 36  HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
                 V +++ +     G+ I GG +   PI+I+K++ G  A     L  GD I  +  
Sbjct: 2   SLQRRRVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60

Query: 94  YDSRDLRHKDATNFFQSSDTSISLGIQR 121
            D     H +A    + +   + L ++ 
Sbjct: 61  EDLSSATHDEAVQALKKTGKEVVLEVKY 88

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 67.7 bits (166), Expect = 3e-15
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAAE--LKR 84
           SG   Q     F+V + R      +GL + GG D   D+P+ +  +    PA     L+ 
Sbjct: 3   SGSSGQASG-HFSVELVRGYA--GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEV 59

Query: 85  GDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
           GD++  I    ++ L H  A    ++    + L I+R   G
Sbjct: 60  GDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 67.4 bits (165), Expect = 3e-15
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGD 86
           S   +        V ++       WG  + GG +   P+ ++K+  G  AA   +++ GD
Sbjct: 2   SSGSSGGSFQYVPVQLQGGA---PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGD 58

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
            +  I          ++A    + S   + L ++R   G
Sbjct: 59  ELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG 96

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDI 87
           G           V ++R      +G RI GG +   PI+I  V     A  +  L  GD 
Sbjct: 1   GSSGSSGYKELDVHLRRMES--GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDE 58

Query: 88  IRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPGEKKAA 130
           +  +         H+   +    +  +  ++L ++R       + 
Sbjct: 59  LVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPSSG 103

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 67.9 bits (166), Expect = 3e-15
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 24  IPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-- 81
           I   K G P  P      V +++ +  +  G+ I GG      + I +V+  TPAA +  
Sbjct: 9   IEEDKLGIPTVPG----KVTLQK-DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGT 63

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTP 138
           +  GD I  +     +     +     Q     +++   +     K+          
Sbjct: 64  VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPGI 120

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 67.5 bits (165), Expect = 3e-15
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 17  TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGT 76
              + +     +  +          +++K  +     G+ I GG +   PI+I++++PG 
Sbjct: 7   HHHHSSGHIEGRHMENLYFQGIRKVLLLKEDHE--GLGISITGGKEHGVPILISEIHPGQ 64

Query: 77  PAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ 120
           PA     L  GD I  +   + RD +HK+A          I   + 
Sbjct: 65  PADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 67.6 bits (165), Expect = 4e-15
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA---AE 81
            +  SG    PH N   + +K    +  +G  + GG D   P+++++V PGTPA      
Sbjct: 2   SSGSSGNGGIPHDNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 60

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS----ISLGIQRNPPGEKKAASGSRS 135
           L  GD +  I   D  +  H     F ++S       + L ++ N   +    SG  S
Sbjct: 61  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSS 118

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 66.9 bits (164), Expect = 4e-15
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
                V + + +     G+++    D +  + I  +  G  AA +  L   D +  I  +
Sbjct: 2   MEILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
           D +    + A    Q+S   ++L I R    E
Sbjct: 61  DLKYGTPELAAQIIQASGERVNLTIARPGKPE 92

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 66.5 bits (163), Expect = 5e-15
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
              + + R      +G RI GG +   PI I  + P   A  +  L+ GD +  +     
Sbjct: 3   EQDIFLWRKET--GFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60

Query: 97  RDLRHKDATNFFQSS--DTSISLGIQRNP 123
               H+      Q +     ++L +++  
Sbjct: 61  IGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 66.6 bits (163), Expect = 6e-15
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDI 87
           SG   +       V ++R   H   G  I GG +    I ++ V PG+ A  E L+ GD 
Sbjct: 3   SGSSGEVR----LVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQ 58

Query: 88  IRKIGDYDSRDLRHKDATNFFQSS 111
           I ++ D     + H +A    + S
Sbjct: 59  ILRVNDKSLARVTHAEAVKALKGS 82

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 67.1 bits (164), Expect = 6e-15
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELK 83
             R+S        +   V +   +   S GL I GG +    I IT V PG+ A  + LK
Sbjct: 7   GDRRSTLHLLQGGDEKKVNLVLGD-GRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLK 65

Query: 84  RGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR--NPPGEKKAASGSRSVTPLP 140
            GD I ++      ++ H +A    +SS   + L ++     P  +     ++ +    
Sbjct: 66  VGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRLPHARTTVDETKWIASSS 123

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIR 89
           P     +T   ++K+     + GL ++GG D D    ++ +  G  AA    L  GD I+
Sbjct: 2   PGSFKGSTVVELMKKEGT--TLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIK 59

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            +   +    RH +  +  ++    + L ++   P
Sbjct: 60  AVNGINLAKFRHDEIISLLKNVGERVVLEVEYELP 94

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAA 80
               S + +     T  V + +     ++G  I GG         P+VIT V PG PA  
Sbjct: 93  LPPVSIQGSSVMFRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADR 150

Query: 81  E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           E  +K GD +  +         H +A +  +      +L I+ +  
Sbjct: 151 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVS 196

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 65.4 bits (160), Expect = 1e-14
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
           +    +++ +R   +G  + GG + D  + I  +    PAA +  ++ GD+I  + D   
Sbjct: 1   SIHTKLRKSSR--GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 58

Query: 97  RDLRHKDATNFFQS--SDTSISLGIQR 121
               H      FQS     S+ L + R
Sbjct: 59  LGHTHAQVVKIFQSIPIGASVDLELCR 85

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIG 92
            +TV +++ +    +G+ ++GG D       ++ IVI+ V PG PA   L+  D +  + 
Sbjct: 15  QYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVN 73

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
                D+ H  A    + S    ++ ++R    +    SG  S
Sbjct: 74  GTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGPSS 116

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 31  KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRG 85
           + AQ  Q    + I+RP+     G  +            I +  V PG+ A  +  LK  
Sbjct: 19  QMAQGRQ-IEYIDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKEN 76

Query: 86  DIIRKIGDYD-SRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           D I  I      +++ H+ A    Q +  S+ L + R P   K + SG  S
Sbjct: 77  DQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGD 86
           SG       +   V +         G  I GG    S +V+  + PG  A  +  L+ GD
Sbjct: 6   SGPETVCWGHVEEVELINDGS--GLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGD 61

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
            I KIG  + + +  +      ++   S+ + + R+P G+    SG  S
Sbjct: 62  HILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSS 110

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 64.8 bits (158), Expect = 3e-14
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA---AE 81
           P + +     PH N   + +K    +  +G  + GG D   P+++++V PGTPA      
Sbjct: 4   PEKPTPNGGIPHDNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 62

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
           L  GD +  I   D  +  H     F ++S    S 
Sbjct: 63  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSG 98

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE-- 81
            G       + ++V + R     S G+ I+G  D       + I +  + PG+ AA +  
Sbjct: 3   HGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGR 62

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
           ++  D I ++ D + + +   D     +++   + L + R  P  
Sbjct: 63  IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPLL 107

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGD 86
           SG+P    +    +++ + +     G  I GG D    I ++ +  G PA     L+RGD
Sbjct: 6   SGRPGGDAREPRKIILHKGST--GLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGD 62

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
            I  +   + R+  H+ A    + +  S+++  Q  P    +  S   S
Sbjct: 63  RILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPS 111

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 33  AQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGD 86
           +       TV + R      +G+ I+GG D       ++ IVI+ V  G PA  +L+  D
Sbjct: 2   SHMIWEQHTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQEND 60

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPL 139
            +  +      ++ H  A    + S  +  + I+R      K   G R  T L
Sbjct: 61  RVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR------KKGGGWRRTTYL 107

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 64.8 bits (158), Expect = 6e-14
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 17  TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPG 75
            S+  A    +   + A        + +++       GL +AG  D     I +  + P 
Sbjct: 4   GSSGDAFTDQKIRQRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSRMSIFVVGINPE 61

Query: 76  TPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
            PAAA+  ++ GD + +I +       H++A+   +++ + + L   RN     + ASG 
Sbjct: 62  GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGP 121

Query: 134 RS 135
            S
Sbjct: 122 SS 123

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 64.0 bits (156), Expect = 9e-14
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPAAAE--LKRGDII 88
           P  P Q    + I +       GL I GG D   + IVI +VY    AA +  L  GD I
Sbjct: 12  PIVPGQ-EMIIEISKGRS--GLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQI 68

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
            ++   D R+  H++A    + +   + L + R+    +   SG  S
Sbjct: 69  LEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSS 115

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 63.5 bits (155), Expect = 9e-14
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGD 86
                    TV +K+ N     GL I            I +  V  G  A  +  L  GD
Sbjct: 5   SDHKEPEIITVTLKKQN---GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGD 61

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
            +  +       L  + A      + + ++L + +     ++
Sbjct: 62  QLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 9   NSKSLDALTSTNQALIPTRKSGKPAQPH----QNTFTVVIKRPNRHHSWGLRIAGGCDLD 64
           N  S   L    + LIP +   +  Q      +    V + R       GL + GG +  
Sbjct: 51  NEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRL-HPEGLGLSVRGGLEFG 109

Query: 65  SPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
             + I+ +  G  A +  L+ GD I +I  Y      H++  N  ++  T +S+ ++   
Sbjct: 110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKVRHIG 168

Query: 124 PGEKKAASGS 133
               K++   
Sbjct: 169 LIPVKSSPDE 178

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
            T+ I +       GL I GG D L   I+I +VY    A  +  L  GD I ++   D 
Sbjct: 6   TTIEISKGRT--GLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
           R   H +A N  + +   + L + R+    K
Sbjct: 64  RKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--LKRGDII 88
            H  T  VV+   +    +G+++ G       L SP +I+ +   +PA     L+ GD +
Sbjct: 3   VHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRV 61

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
             I    + D   ++A    + S  +  + ++    
Sbjct: 62  MAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD 97

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 23  LIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAA 80
           L       +   P   TF V + + +     G+ I+         P+VI+ +  G+ A  
Sbjct: 92  LEIEFDVAESVIPSSGTFHVKLPKKHSV-ELGITISSPSSRKPGDPLVISDIKKGSVAHR 150

Query: 81  E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
              L+ GD +  I +        +DA    Q  +  + L I+++ 
Sbjct: 151 TGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
                V +++ +  +  G+ I GG      + I +V+  TPAA +  +  GD I  +   
Sbjct: 23  MVPGKVTLQK-DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
             +     +     Q     +++   +   
Sbjct: 82  SIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 111

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--L 82
              +   P +P      +VI R +     G  I GG D    I I+ +  G PA     L
Sbjct: 5   FLGEEDIPREP----RRIVIHRGST--GLGFNIVGGED-GEGIFISFILAGGPADLSGEL 57

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           ++GD I  +   D R+  H+ A    +++  ++++  Q  P    +  + SR 
Sbjct: 58  RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRV 110

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIR 89
            +Q      +  +K+ N    +G  I GG + D  + +  V P  PAA +  ++ GD+I 
Sbjct: 13  ASQLKGTFLSTTLKKSNM--GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70

Query: 90  KIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPGEKKAASGSRS 135
            I +       H D    FQS     S++L + R  P        + S
Sbjct: 71  YINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANS 118

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTPAA--AEL 82
            +     T  VVI R   +  +G  I            +  P  I ++  G+PA   A+L
Sbjct: 4   GSSGSLQTSDVVIHR-KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           K GD I  +      ++ H D     + +  S++L I      E  + SG  S
Sbjct: 63  KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP--QEELNSPSGPSS 113

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 61.2 bits (149), Expect = 6e-13
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           S  P + H     V + + +    +G  +A G   +  + +  + P  P     LK  D 
Sbjct: 1   SPTPVELH----KVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDR 55

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           + ++    +RD            S   + L I RNP
Sbjct: 56  LLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNP 91

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 61.2 bits (149), Expect = 6e-13
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYD 95
             +TV +KR       G+ I+G  +   PI+I+ +  G  A     +  GD I  I    
Sbjct: 5   IIYTVELKRYGG--PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSS 62

Query: 96  SRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            +     +A +  Q +  +++L I++   
Sbjct: 63  LKGKPLSEAIHLLQMAGETVTLKIKKQTD 91

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 61.7 bits (150), Expect = 7e-13
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LK 83
              +  K     +    V +++ +     G+ I  G      I ++KV  G+ A    L+
Sbjct: 6   SGGERRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEK--GGIYVSKVTVGSIAHQAGLE 61

Query: 84  RGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
            GD + +    + R    + A         +I++  Q NP   + ++     
Sbjct: 62  YGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSG 113

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAA 80
           SG   +      T+V+ R +   S G  I GG              I ++K+    PAA 
Sbjct: 3   SGSSGKS----LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAK 56

Query: 81  E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKA 129
           E  L+  D I ++   D     H  A   F+++   I + + R   G    
Sbjct: 57  EGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 60.9 bits (148), Expect = 9e-13
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 38  NTFTV-VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--ELKRGDIIRKIGDY 94
             F V ++K+  +    GL ++     +    I  +  G       +L+RGDII K    
Sbjct: 2   EKFNVDLMKKAGK--ELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD 56

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTP 138
               L  +     F+ ++  +S+ + R  PG    + GS S+ P
Sbjct: 57  ALEGLPFQVCYALFKGANGKVSMEVTRPKPG----SGGSGSLVP 96

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAA--ELKRGDII 88
           +    V + +     S+G+ I  G          + I I  + P +PA     LK GD I
Sbjct: 4   ELIHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRI 62

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
             +   D R+   +   +  + +D  I L IQ 
Sbjct: 63  LSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDI 87
                  + ++R N     G  IAGG D      D  I ITK+ PG  AA +  L+  D 
Sbjct: 2   GSMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           I  + + D R++ H  A    + + + + L + R  P
Sbjct: 60  ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 96

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 9   NSKSLDALTSTNQALIPTRKSGKPAQ------PHQNTFTVVIKRPNRHHSWGLRIAGGCD 62
           N   +  +T  + A+   +++G   +             + IK        G  IAGG  
Sbjct: 64  NEVDVREVT-HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 122

Query: 63  -----LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115
                 D+ I +TK+  G  A  +  L+ GD I  +      D+ H+DA    +++   +
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182

Query: 116 SLGIQRNPPGEKKA 129
            L + +    E  A
Sbjct: 183 YLKVAKPSNAETMA 196

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 7   NTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSP 66
           +++     +   T           +P        ++ + +  +  S GLR+AGG D+   
Sbjct: 3   SSHHHHHHSSGGTENLYFQGHMILRP--------SMKLVKFRKGDSVGLRLAGGNDV--G 52

Query: 67  IVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS--ISLGIQRNP 123
           I +  V   +PAA E L+ GD I ++ + D  ++  ++A  F         +++  Q+  
Sbjct: 53  IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112

Query: 124 PGEKK 128
              ++
Sbjct: 113 DVYRR 117

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 60.4 bits (147), Expect = 1e-12
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGD 86
            +      FTV ++R       G+ +  G         + I  + PG+PAAA+  L  GD
Sbjct: 2   SSGSSGYVFTVELERGPS--GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGD 59

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
            I ++       L +  A +  +     +   + ++     K
Sbjct: 60  RILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAK 101

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPAAAE-- 81
                    Q      T++ K        G  +AGG DL +  I + +V+P   A+ E  
Sbjct: 3   SGSSGATLKQLDGIHVTILHKEEG--AGLGFSLAGGADLENKVITVHRVFPNGLASQEGT 60

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           +++G+ +  I     +   H DA    + +       I       +     + S
Sbjct: 61  IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSS 114

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
              +V++R N     G  IAGG D      D  I ITK+ PG  AA +  L   D + ++
Sbjct: 5   YEEIVLERGN--SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAA 130
            + D  ++ H  A    + +   + L ++R  P  ++ +
Sbjct: 63  NEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEETS 101

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 34  QPHQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAE--LKRG 85
                     + R  R    G  IAGG         D+ I ++++  G  A     L+ G
Sbjct: 3   SGSSGRHVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           D +  I   D  + RH  A +   ++  +I+L ++R   
Sbjct: 61  DRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 9/108 (8%)

Query: 26  TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPAAAE--L 82
                 P Q       ++  +     S  L + GG D     +V++ VY G  A     +
Sbjct: 5   AATMFSPEQIAGKDVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGV 62

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS----ISLGIQRNPPGE 126
            +GD I  I      D    +A    Q +       I L +   PP E
Sbjct: 63  VKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDI 87
           G+   P +    +VI R +     G  I GG +    I I+ +  G PA     L++GD 
Sbjct: 4   GEEDIPRE-PRRIVIHRGST--GLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQ 59

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           I  +   D R+  H+ A    +++  ++++  Q  P
Sbjct: 60  ILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAE- 81
           SG+PA+  +   T+ I R       G+ IAGG         D  I I++V    PAA   
Sbjct: 6   SGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           ++ GD + ++     +   H +A    + + T++ + + R   
Sbjct: 64  VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESG 106

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 39  TFTVVI-KRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--ELKRGDIIRKIGDYD 95
            F V + K+  +    GL ++     +    I  +  G       +L+RGDII K     
Sbjct: 9   KFNVDLMKKAGK--ELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63

Query: 96  SRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
              L  + +   F+ ++  +S+ + R  P  
Sbjct: 64  LEGLPFQVSYALFKGANGKVSMEVTRPKPAA 94

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGD 86
             Q      ++ ++R       G  I GG      D PI +  V+    A+ +  LKRGD
Sbjct: 19  YFQSMPQCKSITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGD 76

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            I  +       + H++A    + +  +++L +  +  
Sbjct: 77  QIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 26  TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE 81
           +  SG+ A        V + +  +    G  I    D      S IVI  +     A   
Sbjct: 3   SGSSGELALWSPEVKIVELVKDCK--GLGFSILDYQDPLDPTRSVIVIRSLVADGVAERS 60

Query: 82  --LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNP 123
             L  GD +  + +Y   +    +A    ++     + LGI   P
Sbjct: 61  GGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--L 82
           SG     H  T  VV+   +    +G+++ G       L SP +I+ +   +PA     L
Sbjct: 6   SGAGQVVHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS--ISLGIQRNPPGEKKAASGS 133
           + GD +  I    + D   ++A    + S  +  ++L I+ +       +SGS
Sbjct: 65  QIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGS 117

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 59.4 bits (144), Expect = 4e-12
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 28  KSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGD 86
            SG P         V I         G  I+ G      I I+ V PG+ +A   L+ GD
Sbjct: 5   SSGSPGNRENKEKKVFISLV-GSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGD 63

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPGEKKAASGSRS 135
            I ++   D  +L HK+A N  +SS   +IS+             SG  S
Sbjct: 64  QIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSS 113

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 59.0 bits (143), Expect = 4e-12
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           SG+    +     + I+R      +G  I      DSP+ +  V  G PA  A L++ D 
Sbjct: 6   SGEGDPENGEKLQITIRRGK--DGFGFTICC----DSPVRVQAVDSGGPAERAGLQQLDT 59

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           + ++ +      +  +  +  +S  + I L + R   
Sbjct: 60  VLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 59.8 bits (145), Expect = 4e-12
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
              + + R       G  I GG D      DS I ++++     AA +  L+ GD I  +
Sbjct: 18  EEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
              D ++L H+DA + F+++  ++SL +Q     +    SG  S
Sbjct: 76  NGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGPSS 119

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPAAA 80
           S    +  +    V +++       G  I+GG           D  I +T+V P  PA+ 
Sbjct: 2   SHMGHELAKQEIRVRVEK---DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK 58

Query: 81  ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            L+ GD I +   Y   ++ H  A +  ++   ++ L I R   
Sbjct: 59  LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS 102

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 58.9 bits (143), Expect = 6e-12
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
              + +K+       G  I          +PI +  + P   A  +  LK GD + ++  
Sbjct: 12  RLNIQLKKGTE--GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 69

Query: 94  YDSRDLRHKDATNFFQSSDTS--ISLGIQRNPPG 125
            D      ++  +  +S+     +SL + R    
Sbjct: 70  VDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 58.9 bits (143), Expect = 6e-12
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 36  HQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAE--LKRGDI 87
           H   F V +++ +     G+ I G             I +  V  G  A  +  ++  D+
Sbjct: 2   HMELFPVELEKDSE--GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDL 59

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
           + ++       +    A +  +++   +   I R  PGE+
Sbjct: 60  LVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQ 99

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 58.5 bits (142), Expect = 7e-12
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
              + + R       G  I GG D      DS I ++++     AA +  L+ GD I  +
Sbjct: 8   EEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
              D ++L H+DA + F+++  ++SL +Q     
Sbjct: 66  NGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 58.9 bits (143), Expect = 8e-12
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGDIIR 89
                 TV +K+     S G+ IAGG      D PI I  ++P   AA    L+ GD I 
Sbjct: 21  QSMGLRTVEMKK-GPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIV 79

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
            I    +  + H  A N  +++  SI + +       
Sbjct: 80  TICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
             V I++     S G+ +AGG      D PI +  V PG   + +  +K GDI+  +   
Sbjct: 26  KVVNIQKDP-GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV 84

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
           +  ++   +A    + + +SI L       G
Sbjct: 85  ELTEVSRSEAVALLKRTSSSIVLKALEVKEG 115

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAE-LKRGDIIRKI 91
             T+ I R       G+ IAGG         D  I I++V    PAA   ++ GD + ++
Sbjct: 4   ELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEV 61

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
                +   H +A    + + T++ + + R   
Sbjct: 62  NGVALQGAEHHEAVEALRGAGTAVQMRVWRERE 94

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAAAE--LKRGDII 88
             V + R     S G+ I GG  +            I I  V   +PA     LK GD I
Sbjct: 6   RRVELWR-EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            ++   D RD  H+ A    + +   +   +Q    
Sbjct: 65  VEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPAAAELKRGDIIRK 90
              V +++       G  I+GG           D  I +T+V P  PA+  L+ GD I +
Sbjct: 4   EIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQ 60

Query: 91  IGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
              Y   ++ H  A +  ++   ++ L I R   
Sbjct: 61  ANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS 94

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 9/108 (8%)

Query: 26  TRKSGKPAQPHQ--NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA 78
           +  SG    PH                +  G+RI GG ++     +    I K+ PG  A
Sbjct: 3   SGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSA 62

Query: 79  AA--ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
               +L  G  + +          +++  +          + ++ +  
Sbjct: 63  EQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 10  SKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSP 66
           + S D+  S + A   + +S   A       TV +++ +     G  + GG      D P
Sbjct: 5   NSSTDSAASASAASDVSVESTAEATV----CTVTLEKMSA--GLGFSLEGGKGSLHGDKP 58

Query: 67  IVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNP 123
           + I +++ G  +     ++ GD I ++G    + L   +A N  ++  D  +++ I+R  
Sbjct: 59  LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118

Query: 124 PGEKKAASGSRS 135
              K+  +   S
Sbjct: 119 LQSKETTAAGDS 130

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 37  QNTFTVVI-KRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
            +T T+ + K+P +    GL I G  + D+ + ++ +  G  A A+  L +GD I  +  
Sbjct: 3   SDTLTIGLQKKPGK--GLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNG 59

Query: 94  YDSRDLRHKDATNFFQSSDTSISLGIQR 121
            D R+   +      + S  +++L + R
Sbjct: 60  EDVRNATQEAVAALLKCSLGTVTLEVGR 87

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSR 97
             V + +  ++  +GLR+A        I + ++   + AA +  ++ GD++ KI    + 
Sbjct: 2   SKVTLVKSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTE 55

Query: 98  DLRHKDATNFFQSSDTSISLGIQRN 122
           ++   DA    + S   + + +QR+
Sbjct: 56  NMSLTDAKTLIERSKGKLKMVVQRD 80

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 31  KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRG 85
             AQ        ++K P+     G  + G       +  I + ++  G+ A  +  LK  
Sbjct: 14  NMAQGRHVEVFELLKPPSG--GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKET 71

Query: 86  DIIRKIGDYD-SRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
           D I  I      + + H+ A +  Q +  ++ L I R    +
Sbjct: 72  DQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQ 113

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 4/110 (3%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPAAAE--LKRG 85
           SG           V I +     + G+ +        S I I ++ P +       L  G
Sbjct: 6   SGDTVANASGPLMVEIVK-TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           D I  I           +AT    S    + L I   P  ++     S  
Sbjct: 65  DHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGP 114

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 56.3 bits (136), Expect = 3e-11
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 42  VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLR 100
            + + P +   +G  I         I +  V  G+PA  ++L+  D I  I +       
Sbjct: 8   SINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYND 64

Query: 101 HKDATNFFQSSD--TSISLGIQRN 122
            K+       +     + + ++R 
Sbjct: 65  SKEWEEAMAKAQETGHLVMDVRRY 88

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 56.4 bits (137), Expect = 3e-11
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
            F V + + +  +S G+ + GG +       I +  V P   A ++  + +GD +  +  
Sbjct: 6   IFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63

Query: 94  YDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
                  HK A    +++   + L +++   
Sbjct: 64  VSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYD 95
           N  +V + +  +    G  +        P++I+ +  G  A     ++ GDII  + D  
Sbjct: 1   NVISVRLFK-RKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 96  SRDLRHKDATNFFQSSDTSISLGIQ-RNPPGEKKAASGSRSVTPLP 140
             DL +  A    +   +   + +  R P G       + +    P
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP 104

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 13/115 (11%)

Query: 26  TRKSGKPAQPHQN-TFTVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPG 75
           +  S  P   H      V I R   + S G+ I GG               I I +V   
Sbjct: 2   SSGSSGPNFSHWGPPRIVEIFR-EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLED 60

Query: 76  TPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
           +PA     LK GD I ++   D ++  H +A    +++   +   +Q      + 
Sbjct: 61  SPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTPRV 115

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRD 98
            V + +  ++  +GLR+A        I + ++   + AA +  ++ GD++ KI    + +
Sbjct: 5   KVTLVKSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 58

Query: 99  LRHKDATNFFQSSDTSISLGIQRNPPGE 126
           +   DA    + S   + + +QR+    
Sbjct: 59  MSLTDAKTLIERSKGKLKMVVQRDERAT 86

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIR 89
           +    + + +  +    G  IAGG        D+ I +TK+  G  A  +  L+ GD + 
Sbjct: 2   EKIMEIKLIKGPK--GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLL 59

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
            +      ++ H++A    +++   + L + +    
Sbjct: 60  AVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAAAE-- 81
           SG        T+ V + R +   S G+RI G          S I +  V PG+ A     
Sbjct: 6   SGGSDSSLFETYNVELVRKDGQ-SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGH 64

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           ++  D I  +   + +   + D     +++   + L + R       +     S
Sbjct: 65  IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPS 118

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 55.8 bits (135), Expect = 7e-11
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRK 90
               V + +  +    G  IAGG        D+ I ITK+  G  A  +  L+ GD +  
Sbjct: 3   TIMEVNLLKGPK--GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60

Query: 91  IGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           + + + +D+RH++A    +++   + L + +
Sbjct: 61  VNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRK 90
               + + +  +    G  IAGG        D+ I +TK+  G  A  +  L+ GD +  
Sbjct: 24  TVVEIKLFKGPK--GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81

Query: 91  IGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           + +Y   ++ H++A    +++   + L + +   
Sbjct: 82  VNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 55.8 bits (135), Expect = 8e-11
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPGTPAAA 80
           G           + I++       G+ I GG            D  I I+KV P   A  
Sbjct: 1   GSSGSSGPGLRELCIQK-APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGR 59

Query: 81  E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           +  L+ G  + ++       L H +A    +S   ++++ +     
Sbjct: 60  DGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 36  HQNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
           H N  TV +     ++  G+ I G  +   D  I I  +  G   AA+  ++ GD++ ++
Sbjct: 3   HMNIITVTLNMEK-YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61

Query: 92  GDYDSRDLRHKDATNFFQSSDTS---ISLGIQRNPPGEK 127
            D +  ++ + DA    +        I L + ++  G  
Sbjct: 62  NDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSG 100

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIV-ITKVYPGTPAAAE--LKRGDIIRKIGD 93
            +   V +K+     + G+ I GG +   P+  I  +  G  A     LK G +I ++  
Sbjct: 5   SSGTLVRVKKSAA--TLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62

Query: 94  YDSRDLRHKDATNFFQSSDTSISLG 118
              R   H++A      +  +    
Sbjct: 63  LTLRGKEHREAARIIAEAFKTKDRD 87

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
              V +++ +     G+ I GG +   PI+I+K++ G  A     L  GD I  +   D 
Sbjct: 78  RRRVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 136

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRN---PPGEKKAASGSRSVTPLPIVDYCQKE-SKAS 152
               H +A    + +   + L ++      P  K +A G+      P     Q++ S   
Sbjct: 137 SSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPG 196

Query: 153 SASMSVVNSFHDFLDHQHVHRAQAVASP 180
               ++  + H  L   +V R      P
Sbjct: 197 PQPRNLSEAKHVSLKMAYVSRRCTPTDP 224

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPAAAE--LKRGDIIRKIG 92
           TF V + +  +    G+ IAG         S I +  +   +    +  ++ GD I  + 
Sbjct: 5   TFDVELTKNVQ--GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD 62

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
             + +   ++ A    + +  ++ L + R    
Sbjct: 63  GTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 5   NVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-- 62
           ++   + S   + +T+    P   +G   +       + ++R N     G  IAGG D  
Sbjct: 28  HLPNQANSPPVIVNTDTLEAPGYVNGTEGEME--YEEITLERGNS--GLGFSIAGGTDNP 83

Query: 63  ---LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
               D  I ITK+ PG  AA +  L+  D I  + + D R++ H  A    + + + + L
Sbjct: 84  HIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL 143

Query: 118 GIQRNPP 124
            + R  P
Sbjct: 144 YVMRRKP 150

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 17  TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGT 76
           TS  +     +         +    +VI R +     G  I GG D    I I+ +  G 
Sbjct: 286 TSPRRYSPVAKDLLGEEDIPREPRRIVIHRGST--GLGFNIVGGED-GEGIFISFILAGG 342

Query: 77  PAA--AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           PA    EL++GD I  +   D R+  H+ A    +++  ++++  Q  P 
Sbjct: 343 PADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 13/108 (12%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAA 79
                Q  Q    V + R     S G+ I GG  +            I I  V   +PA 
Sbjct: 16  ENLYFQSMQ-PRRVELWR-EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAG 73

Query: 80  AE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
               LK GD I ++   D RD  H+ A    + +   +   +Q     
Sbjct: 74  KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIST 121

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
           +V + R      +G  ++G     +P V++ V  G+PA    L+ GD I  + + + +  
Sbjct: 5   SVEVARGR--AGYGFTLSG----QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPG 125
            H+D           + + I     G
Sbjct: 59  SHEDVVKLIGKCSGVLHMVIAE-GVG 83

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 54.5 bits (131), Expect = 4e-10
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 34  QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
               N  +V + +  +    G  +        P++I+ +  G  A     ++ GDII  +
Sbjct: 4   MIEPNVISVRLFK-RKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAV 61

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQ-RNPPGEKKAASGSRSVTPLP 140
            D    DL +  A    +   +   + +  R P G       + +    P
Sbjct: 62  NDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP 111

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 17  TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKV 72
            S+     P   +       Q T  + +         G+ + G        D  I I  +
Sbjct: 4   GSSGLKGEPDCYALSLESSEQLTLEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSI 62

Query: 73  YPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
             G  A  +  L+  D +  +         + +A    + S
Sbjct: 63  IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAAE--LKRGDIIRK 90
                  V + R N     GL +    D   D  I I+++ P + AA +  ++ GD I +
Sbjct: 16  EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQ 75

Query: 91  IGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           I   + ++     A       + + SL I R
Sbjct: 76  INGIEVQNREEAVAL-LTSEENKNFSLLIAR 105

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 53.5 bits (129), Expect = 6e-10
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 10/105 (9%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAE-- 81
           G         F V +++       G+ I G             I +  V  G  A  +  
Sbjct: 1   GSSGSSGLELFPVELEKDED--GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGR 58

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
           ++  D I ++       +    A    +++  ++   I R  P  
Sbjct: 59  IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSG 103

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 52.8 bits (127), Expect = 8e-10
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAAAE--LKRG 85
           G       N   V +++  R    G+ +       L    VI  +  G PA     L  G
Sbjct: 1   GSSGSSGDNCREVHLEK-RRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIG 59

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPP 124
           D +  I       L         +   S TS++L I   PP
Sbjct: 60  DRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPP 100

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
              + +K+       G  I          +PI +  + P   A  +  LK GD + ++  
Sbjct: 31  RLNIQLKKGTE--GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 88

Query: 94  YDSRDLRHKDATNFFQSSDTS--ISLGIQR 121
            D      ++  +  +S+     +SL + R
Sbjct: 89  VDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSR 97
             V++ +   +  +GLR      L S I + ++     A  +  L  GDII KI    + 
Sbjct: 2   IGVLLMKSRANEEYGLR------LGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTE 55

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
           ++   DA    + S   + L + R+     
Sbjct: 56  NMSLTDARKLIEKSRGKLQLVVLRDLEHHH 85

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
            + I R      +G  I      DSP+ +  V  G PA  A L++ D + ++ +      
Sbjct: 6   QITIPRGKD--GFGFTICC----DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHW 59

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKK 128
           +  +  +  +S  + I L + R  P  K 
Sbjct: 60  KCVELAHEIRSCPSEIILLVWRMVPQVKP 88

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAE-- 81
           P +P    F V + + +   S G+ +    D            I +  V P   A ++  
Sbjct: 4   PPKPGD-IFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGR 60

Query: 82  LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
           + +GD +  +         HK A    +++   + L +++      K
Sbjct: 61  IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSK 107

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 36  HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDY 94
             +   V++ + ++    GLR+      D+ I +  V   +PA+   L+ GD + +I   
Sbjct: 2   AMDPREVILCK-DQDGKIGLRLKSI---DNGIFVQLVQANSPASLVGLRFGDQVLQINGE 57

Query: 95  DSRDLRHKDATNFF-QSSDTSISLGIQRNPP 124
           +        A     Q+    I++ I+  P 
Sbjct: 58  NCAGWSSDKAHKVLKQAFGEKITMTIRDRPF 88

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 8   TNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPI 67
           T  K      +T +  +            +     ++K+  +    GL ++     +   
Sbjct: 84  TTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKEL--GLSLSPN---EIGC 138

Query: 68  VITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
            I  +  G     +  L+RGDII K        L  +     F+ ++  +S+ + R  P 
Sbjct: 139 TIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPT 198

Query: 126 E 126
            
Sbjct: 199 L 199

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 25  PTRKSGKPAQPHQN---TFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAA 79
           P  K  +PA           + +K   +    G+ + GG +  + +  VIT VYP    A
Sbjct: 2   PGSKPQEPATAEIKPNKKILIELKVEKK--PMGVIVCGGKNNHVTTGCVITHVYPEGQVA 59

Query: 80  AE--LKRGDIIRKIGDYDSRD--LRHKDATNFFQSS-DTSISLGIQR 121
           A+  LK  D I  I         +        F ++ + +++L + R
Sbjct: 60  ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFR 106

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 50.5 bits (121), Expect = 8e-09
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAAE--LKR 84
           SG    P        +    +    GL+I GG +      + I +V PG     +  LK 
Sbjct: 3   SGSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKP 62

Query: 85  GDIIRKIGDYDSRDLRHKDATNFFQSS----DTSISLGIQRNPP 124
           GD +  I       +  ++A +    +    ++   +   R+ P
Sbjct: 63  GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 50.1 bits (120), Expect = 9e-09
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 41  TVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTPAA-AELKRGDIIRKIG 92
            +VI    +   +G  +                 V+  V  G+PA  A L+ GD+I  I 
Sbjct: 5   PIVIHSSGK--KYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHIN 62

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
                 L H D       S   ISL        E  
Sbjct: 63  GESVLGLVHMDVVELLLKSGNKISLRTTALENTETS 98

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGDIIR 89
            ++      + R +     GL++ GG           ITKV  G+ A     L+ GD + 
Sbjct: 33  LNKRLKDGSVPRDS-GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91

Query: 90  KIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPP 124
           +      +    ++  N    S  +  + L + R+ P
Sbjct: 92  EWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAAAE--LKRGD 86
               V + +       G  I  G  +            I I+++ PG  A +   L   D
Sbjct: 29  THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVND 88

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            + ++   +         T+   ++  ++ + ++    
Sbjct: 89  EVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 54  GLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
           G  I+GG           D  I +T+V P  PA+  L+ GD I +   Y   ++ H  A 
Sbjct: 5   GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAV 64

Query: 106 NFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMS 157
           +  ++   ++ L I R      K     R              +     + +
Sbjct: 65  SLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAAT 116

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 42  VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLR 100
            + K+  +  ++G  +    D     +I  +  G+PA  A L  GD + +I         
Sbjct: 6   KLSKQEGQ--NYGFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62

Query: 101 HKDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
           H       + S  S++L +      EK   + 
Sbjct: 63  HAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQ 94

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 30  GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDII 88
           G P QP      VVIK+ +    +G  +  G +     +I  + PG+PA  A LK  D++
Sbjct: 1   GSPHQPR----VVVIKKGSN--GYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLV 53

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
             +       L H       +      +L +    
Sbjct: 54  VAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 88

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 12  SLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITK 71
           S  +  S N+    ++     +  ++      +   N     GL +         + I+ 
Sbjct: 2   SSGSSGSKNEKEQLSKAKASVSSLNK-VIQTKLTVGNL--GLGLVVIQN---GPYLQISH 55

Query: 72  VYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQR 121
           +     AA++  L+ GD++  +G  +      ++     Q+    T + +   R
Sbjct: 56  LINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           SG           V+I++    H +G  ++G    D  +++  V PG  A  A +K GD 
Sbjct: 3   SGSSGVQR----CVIIQKDQ--HGFGFTVSG----DRIVLVQSVRPGGAAMKAGVKEGDR 52

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
           I K+      +  H +     +S    ++L +  +  G  
Sbjct: 53  IIKVNGTMVTNSSHLEVVKLIKSGA-YVALTLLGSSSGPS 91

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDI 87
           S   A         + K+  +  ++G  +    D D   +I  +  G+PA  A L  GD 
Sbjct: 5   SSGMASTFNPRECKLSKQEGQ--NYGFFLRIEKDTD-GHLIRVIEEGSPAEKAGLLDGDR 61

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
           + +I         H       + S  S++L +      EK   + 
Sbjct: 62  VLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQ 106

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           SG   QP        + +     S+G  +         + +T + P   A  A +   D 
Sbjct: 3   SGSSGQPR----LCYLVKEG--GSYGFSLKTVQG-KKGVYMTDITPQGVAMRAGVLADDH 55

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
           + ++   +  D  H++     + S + +   +      ++     S
Sbjct: 56  LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKS 101

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDL 99
            VVIK+ +    +G  +  G +     +I  + PG+PA AA LK  D++  +       L
Sbjct: 9   VVVIKKGSN--GYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 65

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
            H       +      +L +         + SG  S
Sbjct: 66  DHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGPSS 101

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDL 99
           ++           G  + G    ++P+ +  + P   A+    + GD I  I   D + L
Sbjct: 26  SIRFTAEE--GDLGFTLRG----NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79

Query: 100 RHKDATNFFQSS-DTSISLGI 119
              +     +S  +  I + +
Sbjct: 80  TLSEVMKLLKSFGEDEIEMKV 100

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
            +           G  + G    ++P+ +  + P   A+ A  K GD I  I   D + L
Sbjct: 18  GIHFTVEEG--DLGFTLRG----NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWL 71

Query: 100 RHKDATNFFQSS-DTSISLGI----QRNPPGEKKAASGS 133
              +     +S     + + +            K+   S
Sbjct: 72  TVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSS 110

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%)

Query: 18  STNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITK 71
             +          +        F V +++ +     G+ I G             I +  
Sbjct: 60  DVDPMAASAEYELEKRVERLELFPVELEKDSE--GLGISIIGMGAGADMGLEKLGIFVKT 117

Query: 72  VYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           V  G  A  +  ++  D++ ++       +    A +  +++   +   I R
Sbjct: 118 VTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              +K+      +G  +           I  V P +PA  + L+  D I ++        
Sbjct: 12  LCTMKKGPS--GYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGE 126
           +H D  +  ++      L +      E
Sbjct: 69  QHGDVVSAIRAGGDETKLLVVDRETDE 95

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 41  TVVIKRPNRHHSWGLRIAG-------GCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIG 92
            + +++   + ++G  I            ++    + +V+  +PA  A L  GD I  + 
Sbjct: 7   VLTLEK-GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQR 121
             +   +RH++  +  ++S   + L    
Sbjct: 66  GLNVEGIRHREIVDIIKASGNVLRLETLY 94

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 34  QPHQNTFTVVIKRPNRHHSWGLRIAGGCD------------LDSPIVITKVYPGTPAAAE 81
           Q       +   R   +   G  I GG D             D  I +T+V  G PA   
Sbjct: 21  QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80

Query: 82  -LKRGDIIRKIGDYDSRDLRHKDATNFF-QSSDTSISLGIQRNPP 124
            L+ GD I ++  +D   + H  A     + S+  + L + R   
Sbjct: 81  GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSL 125

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 45.1 bits (107), Expect = 5e-07
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 34  QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIG 92
           +   N  TV+I+RP+  +  G  +  G       +I  +  G  A    ++ G  I +I 
Sbjct: 7   ETMGNVTTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEIN 59

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGI 119
                   H+   +   ++   I +  
Sbjct: 60  GQSVVATPHEKIVHILSNAVGEIHMKT 86

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              +++      +G  + G         I  V PG+PA  A L  GD + ++   +    
Sbjct: 6   LCCLEKGPN--GYGFHLHGE-KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62

Query: 100 RHKDATNFFQSSDTSISLGIQR 121
            H+   +  +++  ++ L +  
Sbjct: 63  THQQVVSRIRAALNAVRLLVVD 84

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 44.6 bits (106), Expect = 8e-07
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              + +    + +G  +           I +V  G PA  A L+  D+I ++   +  D 
Sbjct: 6   LCRLAKGE--NGYGFHLNAIRG-LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 62

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEK 127
            ++   +  QSS  +++L +      + 
Sbjct: 63  PYEKVVDRIQSSGKNVTLLVCGKKAQDT 90

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 43  VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRH 101
              +   + + G +     +    I + +V  G PA  A L  GD I K+         +
Sbjct: 39  FSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTY 98

Query: 102 KDATNFFQSSDTSISLGIQRNPPGEK 127
                  Q+SDT++ L +     G  
Sbjct: 99  SQVIALIQNSDTTLELSVMPKDSGPS 124

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 44.8 bits (106), Expect = 9e-07
 Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 30  GKPAQPHQNTFTVVIKRPN----------RHHSWGLRIAGGCDLDSPIVITKVYPGTPAA 79
           G      + T  ++ K+ +          +  +            +   +  V  G  A 
Sbjct: 1   GSDYIIKEKT-VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAW 59

Query: 80  -AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            A L+ GD + ++   +   + H+   N  +    ++ + +     
Sbjct: 60  RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 41  TVVIKRPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
            + +++      +G  +      D      + +V PG PA  A ++ GD +  +      
Sbjct: 6   CLHLEKGP--QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVE 63

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
            L H++  +  Q   + +SL +   P  +++
Sbjct: 64  GLGHEETVSRIQGQGSCVSLTVVD-PEADRE 93

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 12/115 (10%)

Query: 21  QALIPTRKSGKPAQPHQNTFTVVIKRPN----------RHHSWGLRIAGGCDLDSPIVIT 70
           Q  +  R SG      + T  ++ K+ +          +  +            +   + 
Sbjct: 12  QDPLVPRGSGSDYIIKEKT-VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLE 70

Query: 71  KVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            V  G  A  A L+ GD + ++   +   + H+   N  +    ++ + +     
Sbjct: 71  SVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 1/91 (1%)

Query: 53  WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
           + L      D     +I+ V PG+PA  A L+RG  I  +           +        
Sbjct: 78  YTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQ 137

Query: 112 DTSISLGIQRNPPGEKKAASGSRSVTPLPIV 142
                        GE          T +P  
Sbjct: 138 LQIGVYKEVVGEDGEVTGGVVPIGETTMPAS 168

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              +K+      +G  +           I  V P +PA  + L+  D I ++        
Sbjct: 12  LCTMKKGPS--GYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGE 126
           +H D  +  ++      L +      E
Sbjct: 69  QHGDVVSAIRAGGDETKLLVVDRETDE 95

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYD 95
           +   + + +       G  I         I++ ++  G  A     +  GD +R++    
Sbjct: 4   SVKIIRLVKNRE--PLGATIKKDEQ-TGAIIVARIMRGGAADRSGLIHVGDELREVNGIP 60

Query: 96  SRDLRHKDATNFFQSSDTSISLGI----QRNPP 124
             D R ++       S  +I+  I    +   P
Sbjct: 61  VEDKRPEEIIQILAQSQGAITFKIIPGSKEETP 93

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 52  SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
              LR     D+   ++I KV  G+PA  A L+ GD+I  IG+    ++ D+     T  
Sbjct: 22  ELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ- 80

Query: 108 FQSSDTSISLGIQRN 122
                + +++ I+R 
Sbjct: 81  -----SQLAVQIRRG 90

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTP 77
                   +Q       V +++ +   ++G  I          C  +   +I K+   +P
Sbjct: 6   SGLSDFSWSQRK----LVTVEKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQEDSP 60

Query: 78  A-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
           A  A L+ GD++  I    +    +K   +  +SS   +++
Sbjct: 61  AHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTI 101

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 52  SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
                     ++ S I + +V P +P+    ++ GDII K+      DS +L+    T  
Sbjct: 22  ELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTE- 80

Query: 108 FQSSDTSISLGIQRN 122
                + + L ++R 
Sbjct: 81  -----SPLLLEVRRG 90

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
           ++ + +  +  S GLR+AGG D    I +  V   +PAA   L+ GD I ++ + D  ++
Sbjct: 9   SMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 66

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSV 158
             ++A  F         + I      +         V     +    +  K S   +S 
Sbjct: 67  IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 125

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDII 88
           SG   Q      T+ I +  +   +G  IA         V   +         L  GD+I
Sbjct: 3   SGSSGQA--ELMTLTIVKGAQ--GFGFTIADS--PTGQRVKQILDIQ--GCPGLCEGDLI 54

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDT--SISLGIQRNPP 124
            +I   + ++L H +  +  +        SL I R   
Sbjct: 55  VEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 6/89 (6%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYD 95
               V + +     S GL I           I ++  G        +  GD I  I   +
Sbjct: 5   IEKEVNVYKSED--SLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESINGEN 60

Query: 96  SRDLRHKDATNFFQSSDTSISLGIQRNPP 124
               RH D     +         ++   P
Sbjct: 61  IVGWRHYDVAKKLKELKKEELFTMKLIEP 89

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 67  IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           +++  V    PA   L++ D+I K+ D     S DL+         S   +I +   RN 
Sbjct: 59  VIVRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYN---HSIGDTIKITYYRN- 114

Query: 124 PGEKK 128
            G+++
Sbjct: 115 -GKEE 118

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
           T+ + + +     G     G        IT +   + AA   L     I +I   +   L
Sbjct: 7   TITMHK-DSTGHVGFIFKNG-------KITSIVKDSSAARNGLLTEHNICEINGQNVIGL 58

Query: 100 RHKDATNFFQSSDTSISL 117
           +     +   +S T +++
Sbjct: 59  KDSQIADILSTSGTVVTI 76

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIV-ITKVYPGTPAAAE---LKR 84
             +   P+  T   +         + + +       +  V + +V     +      +  
Sbjct: 7   GVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHP 66

Query: 85  GDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           GD I +I     R LR ++  +  + +  ++ L I+ +P  ++   SG  S
Sbjct: 67  GDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSGPSS 117

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
           ++ + +  +  S GLR+AGG D    I +  V   +PAA   L+ GD I ++ + D  ++
Sbjct: 1   SMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 58

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSV 158
             ++A  F         + I      +         V     +    +  K S   +S 
Sbjct: 59  IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 117

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDL 99
           TV+IKRP+  +  G  +  G        I  +  G  A    ++ G  I +I        
Sbjct: 298 TVLIKRPDLKYQLGFSVQNGI-------ICSLMRGGIAERGGVRVGHRIIEINGQSVVAT 350

Query: 100 RHKDATNFFQSSDTSISLGI 119
            H+       +S   I +  
Sbjct: 351 AHEKIVQALSNSVGEIHMKT 370

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 46  RPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRH 101
             ++    G+ +       +   +++  +  G PAA   +L  GD I  I       L  
Sbjct: 211 EKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPL 270

Query: 102 KDATNFFQSSDTSISLGIQR 121
                  +       + +  
Sbjct: 271 ATCQGIIKGLKNQTQVKLNI 290

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 4/101 (3%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              +K+      +G  +           I  V P +PA  + L+  D I ++        
Sbjct: 12  LCTMKKGPS--GYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLP 140
           +H D  +  ++      L +      E              
Sbjct: 69  QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHL 109

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AEL 82
             R           T  +V     R    G  +         ++I+++  G  A     L
Sbjct: 11  DERVYESIGHYGGETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLL 67

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
             GD + +I   + R     +  +       +++  +  + 
Sbjct: 68  HEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS 108

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              +++  +   +G  +           I  V PG+PAA + L+  D + ++   +   L
Sbjct: 7   LCHLRKGPQ--GYGFNLHSDKS-RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 63

Query: 100 RHKDATNFFQSSDTSISL 117
           RH +     ++ +    L
Sbjct: 64  RHAEVVASIKAREDEARL 81

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 57  IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
            A G  +D    IV+ +V P  PAA A ++  D+I  + +     + +   + A      
Sbjct: 234 HAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAE---IR 290

Query: 111 SDTSISLGIQRN 122
             + I + + R+
Sbjct: 291 PGSVIPVVVMRD 302

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 63  LDSP--IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISL 117
           ++    + +  V P  PAA  L+ GD I  I       S  +         + +   + +
Sbjct: 1   MNEAKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVRE---KQAGDRVRV 57

Query: 118 GIQRNPPGEKKAASG 132
              R+   ++  A  
Sbjct: 58  TFIRD--RKQHEAEL 70

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 67  IVITKVYPGTPAAAELKRGDIIRKIGDY---DSRDLRHKDATNFFQSSDTSISLGIQRN 122
           + I  V PG+PA+  L  G +I  I      +         T    S    I++   + 
Sbjct: 27  VQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALKT---ISVGEVINITTDQG 82

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%)

Query: 57  IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
           IA   +LD      +++V PG+ +A A +K GDII  +         +LR + AT     
Sbjct: 253 IAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT---TE 309

Query: 111 SDTSISLGIQRN-------------PPGEKKAASGSRSVTPLPIVDYCQKESK 150
             T + LG+ RN                   A   + ++    + D   K+  
Sbjct: 310 PGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGG 362

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 67  IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
           I I +V  G+PAA A L++ D+I  +       +   +      +    I+L I R 
Sbjct: 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRG 419

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 57  IAGGCDLDSPI---VITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQ 109
           +A            ++++V P +PA  A LK GDII +I D     +  ++   +     
Sbjct: 271 LAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISL---L 327

Query: 110 SSDTSISLGIQRN 122
              +++ + ++R+
Sbjct: 328 RVGSTVKIIVERD 340

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 67  IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
           + +      +    A ++ GDII         D+  K      Q     + + + R 
Sbjct: 388 VQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLRG 442

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 52  SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
              LR     D+   ++I KV  G+PA  A L+ GD+I  IG+    ++ D+     T  
Sbjct: 243 ELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ- 301

Query: 108 FQSSDTSISLGIQRN 122
                + +++ I+R 
Sbjct: 302 -----SQLAVQIRRG 311

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 57  IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
           +A    +D+     +++V P + AA A +K GD+I  +          LR +  T     
Sbjct: 276 LAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGT---MP 332

Query: 111 SDTSISLGIQRN 122
             + ++LG+ R+
Sbjct: 333 VGSKLTLGLLRD 344

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 67  IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
           +V+  V  GTPAA   LK+GD+I        +++   +      S  + ++L IQR 
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRG 439

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 52  SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
               R     D+ S   I +V P TPA    LK  D+I  I       + D+        
Sbjct: 241 ELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKRE- 299

Query: 108 FQSSDTSISLGIQRN 122
                +++++ ++R 
Sbjct: 300 -----STLNMVVRRG 309

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 67  IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           I  + V    PA  +++ GD I          +  L    ++   + +   ++L I+R  
Sbjct: 3   IYASSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYISS---KKAGDKVTLKIERE- 58

Query: 124 PGEKKAASG 132
             ++K  + 
Sbjct: 59  -EKEKRVTL 66

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRD 98
             TV I +      +G  IA          + ++    P +  LK GD+I ++   + + 
Sbjct: 4   LITVHIVKGPM--GFGFTIADS-PGGGGQRVKQIVDS-PRSRGLKEGDLIVEVNKKNVQA 59

Query: 99  LRHKDATNFFQSSDT--SISLGIQRNPP 124
           L H    +    S     ++L +QR   
Sbjct: 60  LTHNQVVDMLVESPKGSEVTLLVQRQTR 87

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 67  IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           + +  V    PAA  L  GD+I +I       S++      +   +    ++ +  +   
Sbjct: 9   VYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQEFIDYIHS---KKVGDTVKINYKHG- 64

Query: 124 PGEKKAASG 132
             + + A  
Sbjct: 65  -DKNEQADI 72

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 68  VITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
           V+ ++   + AA A++  G  ++ +   ++ D          +  D S ++ +      +
Sbjct: 5   VVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQ 64

Query: 127 KK 128
           ++
Sbjct: 65  RR 66

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 57  IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
           IA   +LD      +++V PG+ +A A +K GDII  +         +LR + AT     
Sbjct: 253 IAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT---TE 309

Query: 111 SDTSISLGIQRN 122
             T + LG+ RN
Sbjct: 310 PGTKVKLGLLRN 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.69
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.69
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.69
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.68
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.68
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.67
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.67
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.67
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.67
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.67
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.67
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.67
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.67
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.66
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.66
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.66
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.66
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.66
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.66
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.66
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.66
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.66
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.65
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.65
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.65
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.65
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.65
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.65
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.65
2ego_A	96	General receptor for phosphoinositides 1- associat	99.65
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.65
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.65
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.65
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.65
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.64
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.64
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.64
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.64
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.64
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.64
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.64
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.64
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.64
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.64
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.64
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.63
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.63
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.63
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.63
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.63
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.63
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.63
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.62
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.62
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.62
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.62
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.62
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.62
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.62
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.62
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.62
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.62
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.62
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.62
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.61
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.61
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.61
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.61
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.61
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.6
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.6
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.6
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.6
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.6
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.6
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.6
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.6
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.59
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.59
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.59
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.59
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.58
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.58
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.58
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.58
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.58
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.57
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.57
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.57
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.57
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.57
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.57
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.57
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.57
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.57
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.57
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.57
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.56
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.55
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.55
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.55
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.55
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.55
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.55
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.54
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.54
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.54
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.54
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.54
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.54
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.54
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.54
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.53
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.53
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.53
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.53
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.52
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.52
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.51
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.51
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.51
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.51
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.51
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.5
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.5
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.5
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.5
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.5
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.49
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.49
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.48
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.48
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.48
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.48
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.47
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.2
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.47
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.47
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.46
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.46
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.45
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.45
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.45
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.44
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.42
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.42
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.41
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.4
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.4
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.38
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.38
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.37
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.36
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.35
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.33
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.32
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.31
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.3
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.29
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.29
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	99.28
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.27
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.25
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.25
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.23
3k50_A	403	Putative S41 protease; structural genomics, joint	99.22
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.21
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.1
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.06
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.78
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.77
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.77
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.77
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.76
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.75
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.75
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.74
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.73
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.68
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.67
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.64
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.62
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.6
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.59
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.58
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.5
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.49
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.43
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.43
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.42
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.34
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.32
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.3
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.3
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.26
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.16
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.08
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.96
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.92
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.48

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=112.06  Aligned_cols=84  Identities=25%  Similarity=0.559  Sum_probs=75.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|+|..   ..+|||++.+|.+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         3 ~~~~v~l~~---~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   79 (88)
T 2uzc_A            3 SNYSVSLVG---PAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLN   79 (88)
T ss_dssp             CEEEEEEES---SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             cEEEEEEcC---CCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            467888843   37899999999987788999999999999 89999999999999999999999999999988889999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|++.
T Consensus        80 l~v~R~g~   87 (88)
T 2uzc_A           80 MTLQRESD   87 (88)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeCCC
Confidence            99998763

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.69  E-value=1.1e-16  Score=112.03  Aligned_cols=82  Identities=28%  Similarity=0.647  Sum_probs=74.0

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      +++|+|.+   ..+|||++.+|.+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.|
T Consensus         2 ~~~v~l~~---~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   78 (85)
T 1rgw_A            2 AYSVTLTG---PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL   78 (85)
T ss_dssp             EEEEEECC---SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEE
T ss_pred             cEEEEEeC---CCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEE
Confidence            46788864   36899999999987789999999999999 899999999999999999999999999888888888999


Q ss_pred             EEEeCC
Q psy12310        118 GIQRNP  123 (201)
Q Consensus       118 ~v~R~~  123 (201)
                      +|.|++
T Consensus        79 ~v~R~~   84 (85)
T 1rgw_A           79 TLQKSK   84 (85)
T ss_dssp             EEESCC
T ss_pred             EEEeCC
Confidence            999875

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=112.65  Aligned_cols=84  Identities=31%  Similarity=0.607  Sum_probs=75.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|++.+   ..+|||++.+|.+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         3 ~~~~v~~~~---~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   79 (89)
T 2q3g_A            3 DSFKVVLEG---PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLS   79 (89)
T ss_dssp             EEEEEEEES---SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEE
T ss_pred             cEEEEEEcC---CCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEE
Confidence            467788874   37799999999987778999999999999 89999999999999999999999999999988889999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|++.
T Consensus        80 l~v~R~~~   87 (89)
T 2q3g_A           80 LGLSRAIT   87 (89)
T ss_dssp             EEEEEECC
T ss_pred             EEEEeCCC
Confidence            99999764

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.68  E-value=2.2e-16  Score=111.71  Aligned_cols=84  Identities=23%  Similarity=0.406  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|. ...+|||++.+|.+...+++|..|.++||| .+ ||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         4 ~~~~v~l~k~-~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v   82 (90)
T 1qav_A            4 QRRRVTVRKA-DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SCEEEEEECC-TTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             ccEEEEEEeC-CCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            4678999986 457899999999877778999999999999 87 99999999999999999999999999999888999


Q ss_pred             EEEEEeC
Q psy12310        116 SLGIQRN  122 (201)
Q Consensus       116 ~L~v~R~  122 (201)
                      .|+|.|-
T Consensus        83 ~l~v~r~   89 (90)
T 1qav_A           83 VLEVKYM   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999874

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.68  E-value=1.2e-16  Score=119.78  Aligned_cols=89  Identities=28%  Similarity=0.390  Sum_probs=74.7

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ..+.++|+|.|. ...+|||+|.+|.+.   ..+++|..|.++||| .+ ||++||+|++|||.++.++++.+++.+++.
T Consensus        22 ~~~~~~v~l~k~-~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~  100 (120)
T 2iwo_A           22 SMGLRTVEMKKG-PTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKN  100 (120)
T ss_dssp             ---CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred             CCCcEEEEEEcC-CCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345778999986 346899999998762   457999999999999 77 999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..|.|+|.|++..
T Consensus       101 ~~~~v~l~v~r~g~~  115 (120)
T 2iwo_A          101 ASGSIEMQVVAGGDV  115 (120)
T ss_dssp             CCSEEEEEEECCTTS
T ss_pred             CCCeEEEEEEECCcc
Confidence            988999999998754

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.67  E-value=5e-16  Score=110.96  Aligned_cols=87  Identities=18%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|.+...+|||++.++.+ ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++..++..+..+
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   81 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERV   81 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSS-SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            5788999986556789999998876 568999999999999 899 9999999999999999999999998888889999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|.+..
T Consensus        82 ~l~v~R~~~~   91 (95)
T 2vwr_A           82 NLTIARPGKP   91 (95)
T ss_dssp             EEEEEEESCS
T ss_pred             EEEEEcCCcC
Confidence            9999997753

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.67  E-value=3.5e-16  Score=110.00  Aligned_cols=83  Identities=30%  Similarity=0.539  Sum_probs=72.8

Q ss_pred             EEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEE
Q psy12310         41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGI  119 (201)
Q Consensus        41 ~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v  119 (201)
                      ++++.+. +..+|||++.+|.+...+++|..|.++||| ++||++||+|++|||.++.++++.++..+++.....+.|+|
T Consensus         3 ~~~v~~~-~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   81 (87)
T 2pa1_A            3 ALTVDVA-GPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQL   81 (87)
T ss_dssp             EEEEEEC-SSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEE
T ss_pred             EEEEEEC-CCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            3444433 457899999999987778999999999999 99999999999999999999999999999988778999999


Q ss_pred             EeCCC
Q psy12310        120 QRNPP  124 (201)
Q Consensus       120 ~R~~~  124 (201)
                      .|++.
T Consensus        82 ~R~~~   86 (87)
T 2pa1_A           82 DRITS   86 (87)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            99863

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3e-16  Score=112.14  Aligned_cols=84  Identities=29%  Similarity=0.601  Sum_probs=75.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|+|.++   .+|||++.+|.+...+++|..|.++||| ++||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         8 ~~~~v~l~~~---~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   84 (94)
T 2eeg_A            8 MPHSVTLRGP---SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLT   84 (94)
T ss_dssp             CCEEEEECCS---SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEE
T ss_pred             ceEEEEEeCC---CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4567888643   6899999999988889999999999999 89999999999999999999999999988888888999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|++.
T Consensus        85 l~v~R~g~   92 (94)
T 2eeg_A           85 LSVSSGPS   92 (94)
T ss_dssp             EEEECCSS
T ss_pred             EEEEeCCC
Confidence            99999764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.67  E-value=2.7e-16  Score=110.48  Aligned_cols=83  Identities=28%  Similarity=0.515  Sum_probs=74.9

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|. ...+|||++.+|.+...+++|..|.++||| . +||++||+|++|||.++.++++.+++.+++.++..+
T Consensus         2 ~~~~v~l~~~-~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   80 (87)
T 4e34_A            2 PIRKVLLLKE-DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI   80 (87)
T ss_dssp             CCEEEEEECC-TTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             CEEEEEEEEC-CCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3568999886 467899999999877778999999999999 7 799999999999999999999999999999888899


Q ss_pred             EEEEEe
Q psy12310        116 SLGIQR  121 (201)
Q Consensus       116 ~L~v~R  121 (201)
                      .|+|++
T Consensus        81 ~l~v~~   86 (87)
T 4e34_A           81 EFEVVY   86 (87)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999875

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.67  E-value=1.1e-15  Score=109.75  Aligned_cols=87  Identities=23%  Similarity=0.339  Sum_probs=77.6

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ...++|+|.+.  ..+|||.+.++.+...+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..+..
T Consensus         4 ~~~~~v~l~~~--~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   81 (97)
T 1n7e_A            4 AIIYTVELKRY--GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET   81 (97)
T ss_dssp             CCEEEEEEECT--TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             ceEEEEEEEeC--CCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            35778999875  46799999998776678999999999999 899 999999999999999999999999999877899


Q ss_pred             EEEEEEeCCCC
Q psy12310        115 ISLGIQRNPPG  125 (201)
Q Consensus       115 v~L~v~R~~~~  125 (201)
                      +.|+|.|++..
T Consensus        82 v~l~v~R~~~~   92 (97)
T 1n7e_A           82 VTLKIKKQTDA   92 (97)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEEeCCCC
Confidence            99999998754

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=2.5e-16  Score=114.45  Aligned_cols=89  Identities=20%  Similarity=0.348  Sum_probs=79.1

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC-
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-  111 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~-  111 (201)
                      +..+.++|+|.|.  ..+|||.+.+|.+...+++|..|.++||| ++| |++||+|++|||.++.++++.+++.+++.. 
T Consensus         6 ~~~~~~~v~l~~~--~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   83 (103)
T 1uep_A            6 SGYKELDVHLRRM--ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             SSEEEECCEEESS--SSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEeC--CCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4446778899985  47799999999887789999999999999 899 999999999999999999999999999876 


Q ss_pred             -CCeEEEEEEeCCCC
Q psy12310        112 -DTSISLGIQRNPPG  125 (201)
Q Consensus       112 -g~~v~L~v~R~~~~  125 (201)
                       +..|.|+|.|.+..
T Consensus        84 ~g~~v~l~v~R~~~~   98 (103)
T 1uep_A           84 RNGQVNLTVRRKVLS   98 (103)
T ss_dssp             HHTEEEEEEEEECCC
T ss_pred             CCCcEEEEEEeCCCC
Confidence             79999999998653

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.67  E-value=3.2e-16  Score=110.33  Aligned_cols=76  Identities=17%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|+|.|+ ...+|||++.+|       +|.+|.++||| ++||++||+|++|||+++.+++|++++.+|+.+++.|+
T Consensus         4 ~~r~v~l~k~-~~g~~Gf~i~~g-------~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~   75 (82)
T 1r6j_A            4 DPRTITMHKD-STGHVGFIFKNG-------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT   75 (82)
T ss_dssp             CCEEEEEECC-TTSCCCEEEETT-------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             ceEEEEEEEC-CCCCeEEEEECC-------EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEE
Confidence            4578999986 456799999875       38999999999 89999999999999999999999999999998899999


Q ss_pred             EEEEe
Q psy12310        117 LGIQR  121 (201)
Q Consensus       117 L~v~R  121 (201)
                      |+|..
T Consensus        76 L~v~p   80 (82)
T 1r6j_A           76 ITIMP   80 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99874

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.67  E-value=1.2e-15  Score=108.01  Aligned_cols=85  Identities=19%  Similarity=0.315  Sum_probs=75.9

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      .+.++|+|.|.....+|||++.+|.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         5 ~~~~~v~l~k~~~~~~~G~~~~~~~~-~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   83 (91)
T 1m5z_A            5 VELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKL   83 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEE
T ss_pred             cceEEEEEEECCCCCCccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            36788999987544689999999876 468999999999999 8999999999999999999999999888888888999


Q ss_pred             EEEEEeC
Q psy12310        116 SLGIQRN  122 (201)
Q Consensus       116 ~L~v~R~  122 (201)
                      .|+|.|+
T Consensus        84 ~l~v~R~   90 (91)
T 1m5z_A           84 DLVISRN   90 (91)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999985

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=3.3e-15  Score=111.99  Aligned_cols=92  Identities=26%  Similarity=0.412  Sum_probs=80.9

Q ss_pred             CCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        32 ~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      +.....+.++|+|.|.  ..+|||++.+|.+...+++|..|.++||| .+| |++||+|++|||+++.++++.+++.+++
T Consensus        13 ~~~~~~~~~~v~l~~~--~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   90 (123)
T 1ueq_A           13 ASQLKGTFLSTTLKKS--NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ   90 (123)
T ss_dssp             STTCCSEEEEEEEECC--TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cccCCCcEEEEEEEeC--CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4445567889999985  46899999999887788999999999999 899 9999999999999999999999999998


Q ss_pred             C--CCCeEEEEEEeCCCC
Q psy12310        110 S--SDTSISLGIQRNPPG  125 (201)
Q Consensus       110 ~--~g~~v~L~v~R~~~~  125 (201)
                      .  .+..|.|+|.|....
T Consensus        91 ~~~~g~~v~l~v~R~~~~  108 (123)
T 1ueq_A           91 SVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TSCTTCEEEEEEEESCCC
T ss_pred             hCCCCCeEEEEEEeCCCC
Confidence            7  478999999998643

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.66  E-value=7.7e-16  Score=111.17  Aligned_cols=88  Identities=26%  Similarity=0.414  Sum_probs=78.0

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      +....+.|+|.|..  .+|||++.+|.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+
T Consensus         4 ~~~~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   81 (101)
T 2jik_A            4 YLVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDL   81 (101)
T ss_dssp             GGEEEEEEEEECCT--TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             CCCccEEEEEEeCC--CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            33467789999864  7899999999874     368999999999999 899 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCCC
Q psy12310        108 FQSSDTSISLGIQRNPP  124 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~  124 (201)
                      ++..+..+.|+|.|.+.
T Consensus        82 ~~~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           82 FRNAGYAVSLRVQHRLE   98 (101)
T ss_dssp             HHTCCSEEEEEEEEESC
T ss_pred             HHhCCCeEEEEEEeCCC
Confidence            98888999999999764

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.66  E-value=5.9e-16  Score=111.10  Aligned_cols=85  Identities=28%  Similarity=0.391  Sum_probs=75.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCC------CcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDS------PIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~------pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      ...+|+|.|. ...+|||++.+|.+...      +++|..|.++||| .+| |++||+|++|||.++.++++.++..+++
T Consensus         5 ~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            5 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             EEEEEEEECT-TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeC-CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            3567999985 45789999999986543      7999999999999 899 9999999999999999999999998998


Q ss_pred             CCCCeEEEEEEeCC
Q psy12310        110 SSDTSISLGIQRNP  123 (201)
Q Consensus       110 ~~g~~v~L~v~R~~  123 (201)
                      ..+..+.|+|.|++
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence            88999999999976

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.66  E-value=5.8e-16  Score=117.33  Aligned_cols=87  Identities=22%  Similarity=0.436  Sum_probs=77.0

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecC---CCCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~---~~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ..+.+.|+|.|.  ..+|||+|.||.+   ...+++|..|.+++|| .+ ||++||+|++|||+++.+++|.+++.+++.
T Consensus        27 ~~~~~~v~l~k~--~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~  104 (130)
T 1i16_A           27 EATVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             SEEEEEEEEETT--SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             CCcEEEEEEEcC--CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            446778999985  4789999999987   4678999999999999 77 999999999999999999999999999998


Q ss_pred             C-CCeEEEEEEeCCC
Q psy12310        111 S-DTSISLGIQRNPP  124 (201)
Q Consensus       111 ~-g~~v~L~v~R~~~  124 (201)
                      . +..+.|+|+|...
T Consensus       105 ~~~~~v~l~v~r~~~  119 (130)
T 1i16_A          105 LPDGPVTIVIRRKSL  119 (130)
T ss_dssp             SCSSEEEEEEEEESS
T ss_pred             CCCceEEEEEEeCCC
Confidence            8 5579999998754

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.66  E-value=7.8e-16  Score=111.33  Aligned_cols=86  Identities=28%  Similarity=0.470  Sum_probs=77.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      +.++|+|.|.  ..+|||++.+|.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++.
T Consensus         4 ~~~~v~l~k~--~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   81 (102)
T 2i1n_A            4 KYEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE   81 (102)
T ss_dssp             EEEEEEEECB--TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             eEEEEEEEEC--CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            5678999986  47899999998763     468999999999999 899 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|+|.|++..
T Consensus        82 ~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           82 AGPVVRLVVRRRQPP   96 (102)
T ss_dssp             SCSEEEEEEEEECCC
T ss_pred             CCCeEEEEEEeCCCC
Confidence            899999999998754

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.66  E-value=9.9e-16  Score=111.55  Aligned_cols=86  Identities=20%  Similarity=0.366  Sum_probs=76.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      +.++|+|.|..  .+|||++.||.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++..++.
T Consensus         3 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (105)
T 2awx_A            3 KIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN   80 (105)
T ss_dssp             CEEEEEEECBT--TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred             eEEEEEEEECC--CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            56789999864  6899999999763     248999999999999 899 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|+|.|.+..
T Consensus        81 ~~~~v~l~v~R~~~~   95 (105)
T 2awx_A           81 TSDFVYLKVAKPTSM   95 (105)
T ss_dssp             CCSEEEEEEECCCC-
T ss_pred             CCCeEEEEEEcCCCC
Confidence            899999999998765

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.66  E-value=1.4e-15  Score=108.27  Aligned_cols=84  Identities=25%  Similarity=0.418  Sum_probs=74.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      +.++|+|.|.  ..+|||++.||.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++.
T Consensus         3 ~~~~v~l~k~--~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (94)
T 2fe5_A            3 TIMEVNLLKG--PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   80 (94)
T ss_dssp             CEEEEEEECC--TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             EEEEEEEEEC--CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4678999986  36799999998764     348999999999999 899 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEeCC
Q psy12310        111 SDTSISLGIQRNP  123 (201)
Q Consensus       111 ~g~~v~L~v~R~~  123 (201)
                      .+..+.|+|.|++
T Consensus        81 ~~~~v~l~v~R~g   93 (94)
T 2fe5_A           81 TSDMVYLKVAKPG   93 (94)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEcCC
Confidence            8889999999875

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.66  E-value=3e-16  Score=113.90  Aligned_cols=86  Identities=24%  Similarity=0.502  Sum_probs=77.3

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      .+.++|+|..   ..+|||++.+|.+...+++|..|.++||| ++||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         4 g~~~~v~l~~---~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   80 (103)
T 1wf7_A            4 GSSGSVSLVG---PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSL   80 (103)
T ss_dssp             CCCEEEEEES---SSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEE
T ss_pred             CCEEEEEEeC---CCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4567888883   37799999999988788999999999999 8999999999999999999999999998888788899


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|++..
T Consensus        81 ~l~v~R~g~~   90 (103)
T 1wf7_A           81 NMTLQRASAA   90 (103)
T ss_dssp             EEEECCCSCC
T ss_pred             EEEEEeCCCc
Confidence            9999998764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.66  E-value=3.8e-16  Score=113.93  Aligned_cols=88  Identities=28%  Similarity=0.522  Sum_probs=76.4

Q ss_pred             CCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC--CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        34 ~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag--L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      .+....+.|.|.|. ...+|||++.+|.+...+++|..|.++||| .+|  |++||+|++|||.++.+++|.+++.+++.
T Consensus        13 ~~~~~~~~v~l~~~-~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~   91 (107)
T 3nfk_A           13 IPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   91 (107)
T ss_dssp             ---CCCEEEEECCC-TTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHC
T ss_pred             CCCCCEEEEEEEcC-CCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            35556888999886 457899999999887678999999999999 899  99999999999999999999999999988


Q ss_pred             CCC----eEEEEEEeC
Q psy12310        111 SDT----SISLGIQRN  122 (201)
Q Consensus       111 ~g~----~v~L~v~R~  122 (201)
                      .+.    .|.|+|.|+
T Consensus        92 ~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           92 SCERHSGELMLLVRPN  107 (107)
T ss_dssp             GGGSBTTBEEEEEECC
T ss_pred             ccccCCcEEEEEEEcC
Confidence            764    999999874

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=3.7e-16  Score=116.24  Aligned_cols=93  Identities=27%  Similarity=0.475  Sum_probs=80.9

Q ss_pred             CCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-cc--CCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AA--ELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        32 ~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a--gL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      ...+....++|+|.|. ...+|||++.+|.+...+++|..|.++||| .+  ||++||+|++|||.++.+++|.+++.++
T Consensus         9 ~~~~~~~~~~v~l~k~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~   87 (119)
T 2cs5_A            9 GGIPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI   87 (119)
T ss_dssp             CCCCSSCCEEEEECCC-SSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHH
T ss_pred             CCcCCCCeEEEEEEeC-CCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4456667889999986 456799999999887778999999999999 77  9999999999999999999999999999


Q ss_pred             hCCC----CeEEEEEEeCCCC
Q psy12310        109 QSSD----TSISLGIQRNPPG  125 (201)
Q Consensus       109 k~~g----~~v~L~v~R~~~~  125 (201)
                      +..+    ..+.|+|.|+...
T Consensus        88 ~~~~~~~~~~v~l~v~R~~~~  108 (119)
T 2cs5_A           88 KASCERHSGELMLLVRPNAVY  108 (119)
T ss_dssp             HHHHHCCSSCEEEEEECCCCC
T ss_pred             HhccccCCCEEEEEEEccccc
Confidence            8773    4899999997643

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.65  E-value=5.3e-16  Score=112.90  Aligned_cols=87  Identities=26%  Similarity=0.472  Sum_probs=77.1

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..++|+|.|. ...+|||++.+|.+...+++|..|.++||| . +||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         9 ~~~~v~l~~~-~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v   87 (103)
T 2dc2_A            9 PIRKVLLLKE-DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI   87 (103)
T ss_dssp             CEEEEEEECC-SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEE
T ss_pred             CcEEEEEEeC-CCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            4567888876 467899999999887678999999999999 7 599999999999999999999999999999988899


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|++.|....
T Consensus        88 ~l~v~~~~~~   97 (103)
T 2dc2_A           88 EFEVVYVALE   97 (103)
T ss_dssp             EEEEEECC--
T ss_pred             EEEEEecCCc
Confidence            9999987654

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.65  E-value=8e-16  Score=109.05  Aligned_cols=85  Identities=28%  Similarity=0.570  Sum_probs=76.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|.+.+   ..+|||++.+|.+...+++|..|.++||| .+||++||+|++|||.++.++.+.++..+++..+..+.
T Consensus         3 ~~~~v~~~~---~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2pkt_A            3 TTQQIDLQG---PGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLT   79 (91)
T ss_dssp             EEEEEEEES---SSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ccEEEEECC---CCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            356777774   37799999999887778999999999999 89999999999999999999999999999988899999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|++..
T Consensus        80 l~v~R~g~~   88 (91)
T 2pkt_A           80 LTVARSEHE   88 (91)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEECCcc
Confidence            999998754

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=1.1e-15  Score=113.59  Aligned_cols=96  Identities=16%  Similarity=0.247  Sum_probs=80.9

Q ss_pred             CCCCCCCCceEEEEEecCCC-----CceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECC
Q psy12310         30 GKPAQPHQNTFTVVIKRPNR-----HHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSR   97 (201)
Q Consensus        30 ~~~~~~~~~~~~V~L~r~~~-----~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~   97 (201)
                      |.+.........|+|.|...     ..+|||+|.||.+.     ..+++|..|.++||| .+| |++||+|++|||.++.
T Consensus         4 G~~~~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~   83 (117)
T 1ujd_A            4 GSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLT   83 (117)
T ss_dssp             CSCCCCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECT
T ss_pred             CCCCCCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcC
Confidence            44444445567889988631     36899999999863     247999999999999 888 9999999999999999


Q ss_pred             CCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         98 DLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        98 ~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +++|.+++.+++.++..|.|+|.|++..
T Consensus        84 ~~~~~~~~~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           84 SKTYEEVQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             TCCHHHHHHHHSCCSSCEEEEEESSCCC
T ss_pred             CCCHHHHHHHHhcCCCEEEEEEEECCcc
Confidence            9999999999998899999999997653

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=108.12  Aligned_cols=84  Identities=23%  Similarity=0.387  Sum_probs=75.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|. ...+|||++.++.+ ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..+..+
T Consensus         4 ~~~~v~l~k~-~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   81 (92)
T 2qg1_A            4 DTLTIGLQKK-PGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTV   81 (92)
T ss_dssp             CEEEEEEECC-TTSCCSEEEECCSS-SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             eEEEEEEEeC-CCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            5778999985 45789999999876 578999999999999 899 9999999999999999999999998888888899


Q ss_pred             EEEEEeCC
Q psy12310        116 SLGIQRNP  123 (201)
Q Consensus       116 ~L~v~R~~  123 (201)
                      .|+|.|.+
T Consensus        82 ~l~v~R~~   89 (92)
T 2qg1_A           82 TLEVGRIS   89 (92)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccc
Confidence            99999876

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=1.6e-15  Score=110.80  Aligned_cols=87  Identities=24%  Similarity=0.381  Sum_probs=77.6

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC--------CCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHH
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDAT  105 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~--------~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av  105 (201)
                      ..+.++|+|.|.  ..+|||+|.+|.+.        ..+++|..|.++||| .+ ||++||+|++|||.++.++++.+++
T Consensus         6 ~~~~~~v~l~k~--~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~   83 (107)
T 1uhp_A            6 SGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAV   83 (107)
T ss_dssp             SSEEEEEEECCS--SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEEEeC--CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            446788999986  47899999998753        468999999999999 88 9999999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEEeCCC
Q psy12310        106 NFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       106 ~~ik~~g~~v~L~v~R~~~  124 (201)
                      .+++..+..+.|+|.|...
T Consensus        84 ~~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           84 EAFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHHCCSSEEEEEEECCS
T ss_pred             HHHHcCCCcEEEEEEeCCC
Confidence            9999888999999999764

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.65  E-value=4.5e-16  Score=115.57  Aligned_cols=87  Identities=24%  Similarity=0.434  Sum_probs=77.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      +.++|.|.|. ...+|||++.+|.+.      ..+++|..|.++|||+++|++||+|++|||.++.+++|.+++.+++..
T Consensus        14 ~~~~v~l~k~-~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   92 (117)
T 2csj_A           14 EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   92 (117)
T ss_dssp             EEEEEEEECC-SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             eEEEEEEEEC-CCCccCEEEeCCcCCccccCCCCCEEEEEECCCCcccccCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            6778899886 357899999999763      457999999999999999999999999999999999999999999888


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      +..+.|+|.|.+..
T Consensus        93 ~~~v~l~v~R~~~~  106 (117)
T 2csj_A           93 GKIAAIVVKRPRKV  106 (117)
T ss_dssp             CSEEEEEEEEEEEC
T ss_pred             CCeEEEEEEECCcc
Confidence            99999999997654

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.65  E-value=9.9e-16  Score=109.80  Aligned_cols=84  Identities=17%  Similarity=0.364  Sum_probs=72.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEe-------ecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAG-------GCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~g-------G~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      +.++|+|.|. ...+|||++.+       +.+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++
T Consensus         4 ~~r~v~l~k~-~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   82 (96)
T 2ego_A            4 QRKVLTLEKG-DNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK   82 (96)
T ss_dssp             CEEEEEEECC-TTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ccEEEEEEeC-CCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5678999987 45789999997       4455568999999999999 8999999999999999999999999999998


Q ss_pred             CCCCeEEEEEEeC
Q psy12310        110 SSDTSISLGIQRN  122 (201)
Q Consensus       110 ~~g~~v~L~v~R~  122 (201)
                      ..+..+.|+|.|.
T Consensus        83 ~~~~~v~l~v~~~   95 (96)
T 2ego_A           83 ASGNVLRLETLYG   95 (96)
T ss_dssp             HTTTEEEEEEECC
T ss_pred             hCCCeEEEEEEEC
Confidence            8878999999874

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.65  E-value=1.8e-15  Score=107.04  Aligned_cols=84  Identities=15%  Similarity=0.285  Sum_probs=75.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|+|.|..  .+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.+++|.++..+++..+..+.
T Consensus         4 ~~r~v~l~k~~--~g~G~~~~~~~~-~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   80 (90)
T 2he4_A            4 RPRLCHLRKGP--QGYGFNLHSDKS-RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR   80 (90)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECSS-SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEE
T ss_pred             CcEEEEEEECC--CCccEEEEccCC-CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            46689999863  689999998876 568999999999999 89999999999999999999999999999988889999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|.+.
T Consensus        81 l~v~r~~~   88 (90)
T 2he4_A           81 LLVVGPST   88 (90)
T ss_dssp             EEEECCCC
T ss_pred             EEEEccCC
Confidence            99998764

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=114.14  Aligned_cols=86  Identities=24%  Similarity=0.410  Sum_probs=76.7

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecC---CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~---~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .+.+.|.|.|. ...+|||++.+|.+   ...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++.+
T Consensus        23 ~~~~~v~l~k~-~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~  101 (118)
T 3b76_A           23 MHEKVVNIQKD-PGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT  101 (118)
T ss_dssp             EEEEEEEEECC-TTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred             CCcEEEEEEeC-CCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45678888875 45889999999974   3568999999999999 899 999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy12310        112 DTSISLGIQRNP  123 (201)
Q Consensus       112 g~~v~L~v~R~~  123 (201)
                      +..|.|+|.|..
T Consensus       102 ~~~v~L~v~R~~  113 (118)
T 3b76_A          102 SSSIVLKALEVK  113 (118)
T ss_dssp             CSEEEEEEEEEE
T ss_pred             CCeEEEEEEECC
Confidence            999999999864

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=1.2e-15  Score=111.01  Aligned_cols=88  Identities=25%  Similarity=0.441  Sum_probs=78.1

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      ..+.++|+|.|..  .+|||++.+|.+.      ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+
T Consensus         5 ~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   82 (105)
T 1wha_A            5 SSGRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSL   82 (105)
T ss_dssp             CCEEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCeeEEEEEEeCC--CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3467889999864  6799999999863      468999999999999 899 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCCCC
Q psy12310        108 FQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~~  125 (201)
                      ++..+..+.|+|.|....
T Consensus        83 l~~~g~~v~l~v~R~~~~  100 (105)
T 1wha_A           83 LTAASPTIALLLEREAGS  100 (105)
T ss_dssp             HTSCCSCEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEECCCC
Confidence            998889999999998654

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.65  E-value=6.4e-16  Score=109.22  Aligned_cols=84  Identities=20%  Similarity=0.357  Sum_probs=74.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC--CC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DT  113 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~  113 (201)
                      +.++|+|.|..  .+|||++.+|.+...+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..  +.
T Consensus         2 ~~~~v~l~~~~--~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   79 (90)
T 2q9v_A            2 MEQDIFLWRKE--TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQG   79 (90)
T ss_dssp             EEEEEEEECBT--TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEEECC--CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            45789999864  7799999999887788999999999999 899 999999999999999999999999999876  34


Q ss_pred             eEEEEEEeCC
Q psy12310        114 SISLGIQRNP  123 (201)
Q Consensus       114 ~v~L~v~R~~  123 (201)
                      .+.|+|.|..
T Consensus        80 ~v~l~v~R~~   89 (90)
T 2q9v_A           80 HVNLTVRQTR   89 (90)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEEEEecc
Confidence            8999999863

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.64  E-value=4.2e-16  Score=114.45  Aligned_cols=88  Identities=22%  Similarity=0.393  Sum_probs=75.9

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC-
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~-  111 (201)
                      .+.++|.|.|. ...+|||++.+|.+.  ..+++|..|.++||| .+| |++||+|++|||+++.+++|.+++.+++.. 
T Consensus         4 ~~~~~v~l~k~-~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   82 (108)
T 3cbz_A            4 MNIITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIV   82 (108)
T ss_dssp             CCEEEEEECHH-HHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEEeC-CCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            36788999874 347799999999754  568999999999999 888 999999999999999999999999999765 


Q ss_pred             --CCeEEEEEEeCCCC
Q psy12310        112 --DTSISLGIQRNPPG  125 (201)
Q Consensus       112 --g~~v~L~v~R~~~~  125 (201)
                        +..|.|+|.|....
T Consensus        83 ~~~~~v~l~v~R~~~~   98 (108)
T 3cbz_A           83 HKPGPIVLTVAKSGGG   98 (108)
T ss_dssp             TSSSCEEEEEECCCC-
T ss_pred             cCCCeEEEEEEeCCCC
Confidence              45799999997654

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.64  E-value=2.7e-15  Score=107.20  Aligned_cols=86  Identities=19%  Similarity=0.400  Sum_probs=76.8

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .+.++|.|.|.+  .+|||++.+|.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..
T Consensus         4 g~~~~v~l~k~~--~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   81 (96)
T 1d5g_A            4 GDIFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT   81 (96)
T ss_dssp             TCEEEEEEECSS--SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCEEEEEEEeCC--CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            357889999864  7899999998764   358999999999999 899 999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                      +..+.|+|.|++.
T Consensus        82 g~~v~l~v~R~~~   94 (96)
T 1d5g_A           82 GQVVHLLLEKGQS   94 (96)
T ss_dssp             CSEEEEEEECCSC
T ss_pred             CCeEEEEEEcCCC
Confidence            8999999998764

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.64  E-value=2.5e-15  Score=107.76  Aligned_cols=87  Identities=28%  Similarity=0.409  Sum_probs=77.6

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCC-CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLD-SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      .+.++|+|.|.  ..+|||++.++.+.. .+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+.
T Consensus         3 g~~~~v~l~~~--~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   80 (98)
T 2opg_A            3 GCETTIEISKG--RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQ   80 (98)
T ss_dssp             CEEEEEEEECB--TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             CCEEEEEEEEC--CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45778999985  478999999988754 58999999999999 899 99999999999999999999999999988889


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .+.|+|.|++..
T Consensus        81 ~v~l~v~R~~~~   92 (98)
T 2opg_A           81 RVRLTLYRDEAP   92 (98)
T ss_dssp             EEEEEEEECSSC
T ss_pred             eEEEEEEcCCCC
Confidence            999999998754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=4.5e-15  Score=108.77  Aligned_cols=92  Identities=25%  Similarity=0.407  Sum_probs=80.7

Q ss_pred             CCCCCCceEEEEEecCCCCceeEEEEEeecC------CCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHH
Q psy12310         32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        32 ~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~------~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      +.....+.+++.+.+.  ..+|||.+.+|.+      ...+++|..|.++||| .+||++||+|++|||.++.++.+.++
T Consensus         9 ~~~~~~~~~~~~l~~~--~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~   86 (110)
T 1x5q_A            9 PARIEEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA   86 (110)
T ss_dssp             CCCCCCEEEEEEEECS--SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             cccCCcceEEEEEecC--CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHH
Confidence            4555667888999885  5789999999875      3568999999999999 89999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeCCCC
Q psy12310        105 TNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +..++..+..+.|+|.|++..
T Consensus        87 ~~~~~~~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           87 VEALRGAGTAVQMRVWRESGP  107 (110)
T ss_dssp             HHHHHSCCSEEEEEEEECSSC
T ss_pred             HHHhhCCCCeEEEEEEECCcc
Confidence            888888899999999998754

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=108.70  Aligned_cols=85  Identities=27%  Similarity=0.494  Sum_probs=75.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..++|+|.|.  ..+|||++.+|.+...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+..+
T Consensus         5 ~~r~v~l~k~--~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (93)
T 2dkr_A            5 SSGVVELPKT--DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV   82 (93)
T ss_dssp             CSCEEEEECC--TTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEE
T ss_pred             CCEEEEEEeC--CCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            3457899885  47899999999877789999999999999 885 9999999999999999999999999998887899


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|...
T Consensus        83 ~l~v~r~~~   91 (93)
T 2dkr_A           83 KLVVRSGPS   91 (93)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEEeCCC
Confidence            999988653

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=112.76  Aligned_cols=90  Identities=24%  Similarity=0.333  Sum_probs=79.5

Q ss_pred             CCCCceEEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHH
Q psy12310         34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHK  102 (201)
Q Consensus        34 ~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~  102 (201)
                      ..+.+.++|.|.|. ...+|||+|.||.+.         ..+++|..|.++||| .+| |++||+|++|||.++.++++.
T Consensus        11 ~~~~~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   89 (117)
T 2ehr_A           11 SHWGPPRIVEIFRE-PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS   89 (117)
T ss_dssp             SCBCCCEEEEECCC-SSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred             ccCCCCEEEEEEeC-CCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            45557788999986 457899999999864         358999999999999 898 999999999999999999999


Q ss_pred             HHHHHHhCCCCeEEEEEEeCCC
Q psy12310        103 DATNFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       103 ~av~~ik~~g~~v~L~v~R~~~  124 (201)
                      +++.+++..+..+.|+|.|...
T Consensus        90 ~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           90 EAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHHHHTSCSSEEEEECCBSC
T ss_pred             HHHHHHHcCCCeEEEEEEECCC
Confidence            9999999889999999988764

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=112.41  Aligned_cols=86  Identities=19%  Similarity=0.430  Sum_probs=77.1

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      ..+.++|+|.|..  .+|||++.+|.+...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+.
T Consensus        22 ~~~~~~v~l~~~~--~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~   99 (112)
T 2r4h_A           22 SMDFYTVELERGA--KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGR   99 (112)
T ss_dssp             -CCEEEEEEECBT--TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCceEEEEEEcCC--CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3467789998863  6799999999876789999999999999 899 99999999999999999999999999988889


Q ss_pred             eEEEEEEeCC
Q psy12310        114 SISLGIQRNP  123 (201)
Q Consensus       114 ~v~L~v~R~~  123 (201)
                      .+.|+|.|++
T Consensus       100 ~v~l~v~R~~  109 (112)
T 2r4h_A          100 RVRLFLKRGE  109 (112)
T ss_dssp             EEEEEEECCE
T ss_pred             eEEEEEEeCC
Confidence            9999999875

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=108.92  Aligned_cols=86  Identities=26%  Similarity=0.436  Sum_probs=76.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      +.++|+|.|.  ..+|||++.+|.+.    ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..
T Consensus         3 ~~~~v~l~k~--~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   80 (97)
T 2jil_A            3 RTVEVTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC   80 (97)
T ss_dssp             EEEEEEEECB--TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             eEEEEEEEeC--CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4678999885  47899999999753    458999999999999 899 999999999999999999999999999888


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      +..+.|+|.|++..
T Consensus        81 g~~v~l~v~R~~~~   94 (97)
T 2jil_A           81 GQEAALLIEYDVSE   94 (97)
T ss_dssp             CSEEEEEEEEECCC
T ss_pred             CCeEEEEEEeCCCc
Confidence            89999999997753

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=5.9e-16  Score=115.43  Aligned_cols=88  Identities=22%  Similarity=0.396  Sum_probs=76.9

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      +..+.++|+|.|..  .+|||++.+|.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++
T Consensus        22 ~~~~~~~v~L~k~~--~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   99 (117)
T 2fne_A           22 SMPQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK   99 (117)
T ss_dssp             -CCEEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCccEEEEEEeCC--CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34467789999864  7899999998753   357999999999999 888 9999999999999999999999999998


Q ss_pred             CCCCeEEEEEEeCCC
Q psy12310        110 SSDTSISLGIQRNPP  124 (201)
Q Consensus       110 ~~g~~v~L~v~R~~~  124 (201)
                      ..+..|.|+|.|.+.
T Consensus       100 ~~~~~v~l~v~R~g~  114 (117)
T 2fne_A          100 RTKGTVTLMVLSSDE  114 (117)
T ss_dssp             HCCSSEEEEEEECSC
T ss_pred             cCCCeEEEEEEeCCc
Confidence            887789999999874

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=111.70  Aligned_cols=77  Identities=22%  Similarity=0.405  Sum_probs=69.9

Q ss_pred             CCceeEEEEEeecCCCC-----CcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310         49 RHHSWGLRIAGGCDLDS-----PIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR  121 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~~~-----pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R  121 (201)
                      ...+|||+|.||.+...     +++|..|.++||| ++| |++||+|++|||.++.++++.+++.+++..+..+.|+|.|
T Consensus        11 ~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R   90 (106)
T 4amh_A           11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK   90 (106)
T ss_dssp             -CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEEC
T ss_pred             CCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Confidence            45889999999997543     8999999999999 899 9999999999999999999999999999998999999999


Q ss_pred             CCCC
Q psy12310        122 NPPG  125 (201)
Q Consensus       122 ~~~~  125 (201)
                      ++..
T Consensus        91 ~~~~   94 (106)
T 4amh_A           91 PGSG   94 (106)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8753

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6.7e-16  Score=111.68  Aligned_cols=84  Identities=20%  Similarity=0.361  Sum_probs=71.8

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      .++++.+. +..+|||++.+|.+...+++|..|.++||| ++ ||++||+|++|||.++.++ +.+++.+++..+..+.|
T Consensus        11 ~~~~v~~~-~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l   88 (100)
T 2edp_A           11 QYVPVQLQ-GGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKL   88 (100)
T ss_dssp             EEEEEECC-SCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEE
T ss_pred             EEEEEEEC-CCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEE
Confidence            34444433 336899999999887778999999999999 88 9999999999999999997 88888899888899999


Q ss_pred             EEEeCCCC
Q psy12310        118 GIQRNPPG  125 (201)
Q Consensus       118 ~v~R~~~~  125 (201)
                      +|.|++..
T Consensus        89 ~v~R~~~~   96 (100)
T 2edp_A           89 IVRRRNSG   96 (100)
T ss_dssp             EEEECCCS
T ss_pred             EEEeCCCC
Confidence            99998764

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.63  E-value=2.9e-15  Score=112.86  Aligned_cols=90  Identities=21%  Similarity=0.346  Sum_probs=78.7

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecC-----CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~-----~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      +..+.++|.|.+. ...+|||++.++.+     ...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+
T Consensus        12 ~~~~~~~v~l~~~-~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   90 (129)
T 2dmz_A           12 SLFETYNVELVRK-DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEV   90 (129)
T ss_dssp             CCEEEEEEEECCC-TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred             CCCcEEEEEEEeC-CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4457888999664 46789999999875     2458999999999999 899 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCCCC
Q psy12310        108 FQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~~  125 (201)
                      ++..+..+.|+|.|++..
T Consensus        91 l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           91 LRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             HHHCCSSEEEEEEEESSS
T ss_pred             HHcCCCeEEEEEEeCCcc
Confidence            988889999999998764

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.63  E-value=2.2e-15  Score=105.39  Aligned_cols=80  Identities=23%  Similarity=0.411  Sum_probs=71.9

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSI  115 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v  115 (201)
                      ++|+|.|..  .+|||++.+|.+...+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..  +..+
T Consensus         2 ~~v~l~k~~--~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v   79 (85)
T 2i04_A            2 IHTKLRKSS--RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASV   79 (85)
T ss_dssp             EEEEEECBT--TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEE
T ss_pred             EEEEEEECC--CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence            578898853  6899999998876778999999999999 899 999999999999999999999999899876  7899


Q ss_pred             EEEEEe
Q psy12310        116 SLGIQR  121 (201)
Q Consensus       116 ~L~v~R  121 (201)
                      .|+|.|
T Consensus        80 ~l~v~R   85 (85)
T 2i04_A           80 DLELCR   85 (85)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999876

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=109.76  Aligned_cols=86  Identities=27%  Similarity=0.507  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      +.++|+|.+.  ..+|||.+.++.+.  ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+.
T Consensus        11 ~~~~v~l~~~--~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   88 (104)
T 2djt_A           11 GHFSVELVRG--YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP   88 (104)
T ss_dssp             CCEEEEEECC--SSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCS
T ss_pred             ceEEEEEEeC--CCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            5678999985  36899999998764  568999999999999 899 99999999999999999999999988887889


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .+.|+|.|++..
T Consensus        89 ~v~l~v~R~g~~  100 (104)
T 2djt_A           89 QLHLVIRRPLSG  100 (104)
T ss_dssp             EEEEEECCCCCC
T ss_pred             eEEEEEEECCCC
Confidence            999999998753

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.63  E-value=5.1e-15  Score=107.88  Aligned_cols=87  Identities=26%  Similarity=0.469  Sum_probs=77.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      +.++|+|.|. ...+|||++.+|.+.      ..+++|..|.++|||.+||++||+|++|||.++.++++.+++..++..
T Consensus         7 ~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (107)
T 2h2b_A            7 EQHTVTLHRA-PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKS   85 (107)
T ss_dssp             EEEEEEEECB-TTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTBTTBCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             eeEEEEEEeC-CCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchhhCCCCCCEEEEECCEECCCccHHHHHHHhhCC
Confidence            5788999986 457899999998763      458999999999999889999999999999999999999888888878


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      +..+.|+|.|++..
T Consensus        86 g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           86 GKNAKITIRRKKGG   99 (107)
T ss_dssp             CSEEEEEEEEESCC
T ss_pred             CCEEEEEEEECCCC
Confidence            99999999998754

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.63  E-value=3.3e-15  Score=106.84  Aligned_cols=86  Identities=24%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecC------CCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~------~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      +.+++.+.+.  ..+|||++.+|.+      ...+++|..|.++||| .+||++||+|++|||.++.++.+.+++..++.
T Consensus         3 ~~~~v~~~~~--~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~   80 (97)
T 2w4f_A            3 EELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG   80 (97)
T ss_dssp             CEEEEEEECB--TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             eEEEEEEEeC--CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            4678888885  5789999999876      3468999999999999 89999999999999999999999988888887


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|+|.|++..
T Consensus        81 ~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           81 AGTAVQMRVWRERET   95 (97)
T ss_dssp             SCSEEEEEEECCSSC
T ss_pred             CCCeEEEEEEeCCcc
Confidence            899999999998753

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=3.5e-15  Score=110.99  Aligned_cols=91  Identities=19%  Similarity=0.245  Sum_probs=79.7

Q ss_pred             CCCCceEEEEEecCCCCceeEEEEEeecCCCC-CcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDS-PIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        34 ~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~-pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      .+....+.|.|.+. ...+|||.+.++.+... +++|..|.++||| ++| |++||+|++|||.++.++++.+++.+++.
T Consensus        11 ~~~~~~~~v~l~k~-~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~   89 (117)
T 1v62_A           11 ANASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS   89 (117)
T ss_dssp             CCSSSSEEEEEECC-TTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS
T ss_pred             cCCCCcEEEEEEcC-CCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45556788999986 45789999999876443 4999999999999 888 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|+|.|.+..
T Consensus        90 ~g~~v~l~v~r~~~~  104 (117)
T 1v62_A           90 ISEKVRLEILPVPQS  104 (117)
T ss_dssp             CSSEEEEEECCBTTB
T ss_pred             CCCeEEEEEEECCCC
Confidence            899999999997754

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.63  E-value=2.6e-15  Score=110.47  Aligned_cols=87  Identities=20%  Similarity=0.358  Sum_probs=74.9

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ...+.+.|++.|.   .+|||++.||.+.  ..+++|..|.+++|| .+| |++||+|++|||+++.+++|.+++.+|+.
T Consensus        12 ~~~~~~~v~l~k~---~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~   88 (109)
T 1wi4_A           12 RDPAFRVITVTKE---TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   88 (109)
T ss_dssp             CCTTEEEEEECCS---SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCC---CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3345678889874   6799999999764  347999999999999 888 99999999999999999999999999976


Q ss_pred             C----CCeEEEEEEeCCC
Q psy12310        111 S----DTSISLGIQRNPP  124 (201)
Q Consensus       111 ~----g~~v~L~v~R~~~  124 (201)
                      +    +..+.|.+.|.+.
T Consensus        89 ~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           89 AKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SCCSSSSCEEEEEECCCC
T ss_pred             cccCCCceEEEEEEeCCC
Confidence            5    4789999999764

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.62  E-value=2.8e-15  Score=112.50  Aligned_cols=86  Identities=16%  Similarity=0.290  Sum_probs=77.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ...+|+|.|. ...+|||++.||.+...+++|..|.++||| .+| |++||+|++|||.++.+++|.+++.+++..+..+
T Consensus        19 ~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v   97 (125)
T 3hpk_A           19 VPGKVTLQKD-AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV   97 (125)
T ss_dssp             EEEEEEEECC-TTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred             CCeEEEEEeC-CCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4667889886 467899999999987788999999999999 899 9999999999999999999999999999888889


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|...
T Consensus        98 ~l~v~r~~~  106 (125)
T 3hpk_A           98 TIHYNKLQA  106 (125)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEECCC
Confidence            999998543

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.62  E-value=2.8e-15  Score=107.20  Aligned_cols=86  Identities=17%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEee--cCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG--~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ..++|+|.|..  .+|||.+.+.  .+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..
T Consensus         3 ~~r~v~l~k~~--~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   80 (96)
T 2v90_A            3 KPRCLHLEKGP--QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC   80 (96)
T ss_dssp             CCEEEEEECBT--TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCEEEEEEeCC--CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            35689999863  6899999884  343457999999999999 899999999999999999999999999999888899


Q ss_pred             EEEEEEeCCCC
Q psy12310        115 ISLGIQRNPPG  125 (201)
Q Consensus       115 v~L~v~R~~~~  125 (201)
                      +.|+|.|++..
T Consensus        81 v~l~v~r~~~~   91 (96)
T 2v90_A           81 VSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEECCCTT
T ss_pred             EEEEEECCCCc
Confidence            99999998765

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.62  E-value=3.8e-16  Score=113.46  Aligned_cols=92  Identities=30%  Similarity=0.569  Sum_probs=80.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|.+..   ..+|||++.+|.+...+++|..|.++||| ++||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         5 ~~~~v~~~~---~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   81 (103)
T 1v5l_A            5 SSGNVVLPG---PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLC   81 (103)
T ss_dssp             CCBCCEEES---SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEE
T ss_pred             CEEEEEEcC---CCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            455677763   46899999999987778999999999999 89999999999999999999999999999988889999


Q ss_pred             EEEEeCCCCCcccccc
Q psy12310        117 LGIQRNPPGEKKAASG  132 (201)
Q Consensus       117 L~v~R~~~~~~~~~~~  132 (201)
                      |+|.|++...|.+...
T Consensus        82 l~v~R~g~~~~~~~~~   97 (103)
T 1v5l_A           82 LKIDRAETRLWSPQVS   97 (103)
T ss_dssp             CEECCCTTTTSCSCCC
T ss_pred             EEEEECCeEccCCCCC
Confidence            9999998776655543

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.62  E-value=2.2e-15  Score=114.67  Aligned_cols=86  Identities=15%  Similarity=0.285  Sum_probs=75.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCC------------CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLD------------SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~------------~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      +.++|+|.|. ...+|||+|.++.+..            .+++|..|.++||| ++||++||+|++|||.++.++++.++
T Consensus        27 ~~r~v~l~r~-~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~  105 (132)
T 3l4f_D           27 KEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV  105 (132)
T ss_dssp             CCCEEEEECC-TTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHH
T ss_pred             CCEEEEEEEC-CCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            3457999885 4578999999998631            26899999999999 89999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeCCC
Q psy12310        105 TNFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~~~  124 (201)
                      +.+++..+..+.|+|.|...
T Consensus       106 ~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D          106 VNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             HHHHHHTTTEEEEEEECCCC
T ss_pred             HHHHHcCCCEEEEEEEECCC
Confidence            99999899999999998754

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=1.9e-15  Score=110.27  Aligned_cols=85  Identities=22%  Similarity=0.393  Sum_probs=74.8

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCc-EEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-----
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPI-VITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS-----  110 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi-~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~-----  110 (201)
                      .+.|.|.|.  ..+|||+|.||.+...|+ +|..|.+++|| .+| |++||+|++|||.++.+++|.+++.+|+.     
T Consensus         7 ~~~v~l~k~--~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~   84 (103)
T 1ufx_A            7 GTLVRVKKS--AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK   84 (103)
T ss_dssp             SEEEEEECC--SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCS
T ss_pred             eEEEEEEcC--CCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccC
Confidence            557888875  478999999999876676 99999999999 888 99999999999999999999999999986     


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.++|.|.+..
T Consensus        85 ~~~~i~l~v~r~~~~   99 (103)
T 1ufx_A           85 DRDYIDFLVTEFNSG   99 (103)
T ss_dssp             SCSEEEEEECCCCCC
T ss_pred             CCCeEEEEEEEcccC
Confidence            577899999987643

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.62  E-value=4.2e-15  Score=108.52  Aligned_cols=90  Identities=20%  Similarity=0.373  Sum_probs=77.6

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      ...+.+.|.|.|.....+|||++.++.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+
T Consensus         9 ~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   88 (108)
T 2jre_A            9 SGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEV   88 (108)
T ss_dssp             SSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHH
T ss_pred             cCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            33467889996433568899999998753     348999999999999 899 99999999999999999999999988


Q ss_pred             HhCCCCeEEEEEEeCCC
Q psy12310        108 FQSSDTSISLGIQRNPP  124 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~  124 (201)
                      ++..+..+.|+|.|.+.
T Consensus        89 l~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           89 LRNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHHHCSEEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            88788999999999875

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=3.2e-15  Score=109.15  Aligned_cols=89  Identities=19%  Similarity=0.332  Sum_probs=77.3

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEe---ecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHH
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAG---GCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATN  106 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~g---G~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~  106 (201)
                      +..+.+.|.|.|..  .+|||++.+   |.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.
T Consensus         6 ~~~~~~~v~l~k~~--~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   83 (107)
T 1wf8_A            6 SGLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAAT   83 (107)
T ss_dssp             CCEEEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHH
T ss_pred             CCceEEEEEEEECC--CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            44577889998863  689999999   4442   357999999999999 899 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEeCCCC
Q psy12310        107 FFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       107 ~ik~~g~~v~L~v~R~~~~  125 (201)
                      +++..+..+.|+|.|.+..
T Consensus        84 ~~~~~~~~v~l~v~R~~~~  102 (107)
T 1wf8_A           84 VLRNTKGNVRFVIGREKPS  102 (107)
T ss_dssp             HHHHCCSEEEEEEEEECCC
T ss_pred             HHhcCCCeEEEEEEeCCCC
Confidence            9988899999999997754

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.62  E-value=3.3e-15  Score=108.69  Aligned_cols=85  Identities=28%  Similarity=0.429  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|+|.|. ...+|||.+.++.+...+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++. +..+.
T Consensus        15 ~~~~v~l~k~-~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~   92 (104)
T 1wi2_A           15 LPRIVTLKKP-PGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREIS   92 (104)
T ss_dssp             CCEEEEECCC-TTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEE
T ss_pred             CCEEEEEEeC-CCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEE
Confidence            3568999987 457899999999877789999999999999 89999999999999999999999999999987 78999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|...
T Consensus        93 l~v~r~~~  100 (104)
T 1wi2_A           93 MRVRFFSG  100 (104)
T ss_dssp             EEEECCCC
T ss_pred             EEEEECCC
Confidence            99998754

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=2.8e-15  Score=109.53  Aligned_cols=89  Identities=18%  Similarity=0.374  Sum_probs=78.7

Q ss_pred             CCCceEEEEEecCCCCceeEEEEE-----eecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHH
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIA-----GGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~-----gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      +..+.++|+|.|.+  .+|||++.     ||.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.++
T Consensus         6 ~~~~~~~v~l~k~~--~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~   83 (108)
T 1q7x_A            6 KPGDIFEVELAKND--NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA   83 (108)
T ss_dssp             CSSSEEEEEEESSS--CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHH
T ss_pred             CCCcEEEEEEEECC--CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            44578899999864  78999999     88764   468999999999999 899 99999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeCCCC
Q psy12310        105 TNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +.+++..+..+.|+|.|++..
T Consensus        84 ~~~~~~~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           84 VETLRNTGQVVHLLLEKGQSP  104 (108)
T ss_dssp             HHHHHHTTSEEEEEEECCCCS
T ss_pred             HHHHHcCCCeEEEEEEeCCcc
Confidence            999988899999999998753

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=113.69  Aligned_cols=89  Identities=24%  Similarity=0.348  Sum_probs=78.0

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCC---CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECC-CCCHHHHHHHHh
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLD---SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSR-DLRHKDATNFFQ  109 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~---~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~-~~~~~~av~~ik  109 (201)
                      ..+.++|+|.|. ...+|||++.+|.+..   .+++|..|.++||| .+| |++||+|++|||.++. ++++.+++.+++
T Consensus        23 ~~~~~~v~l~k~-~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           23 GRQIEYIDIERP-STGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             TCEEEEEEEECC-SSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHH
T ss_pred             cCceEEEEEEEC-CCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            346778999986 3478999999998643   37999999999999 899 9999999999999997 999999999999


Q ss_pred             CCCCeEEEEEEeCCCC
Q psy12310        110 SSDTSISLGIQRNPPG  125 (201)
Q Consensus       110 ~~g~~v~L~v~R~~~~  125 (201)
                      ..+..|.|+|.|....
T Consensus       102 ~~~~~v~l~v~r~~~~  117 (128)
T 2db5_A          102 QTTGSLRLIVAREPVH  117 (128)
T ss_dssp             HCCSEEEEEEEECCCS
T ss_pred             cCCCeEEEEEEcCCCC
Confidence            8899999999998643

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.62  E-value=5.6e-15  Score=111.66  Aligned_cols=92  Identities=22%  Similarity=0.397  Sum_probs=80.8

Q ss_pred             CCCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         31 KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        31 ~~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      .+.....+.++|+|.|.  ..+|||++.+|.+...+++|..|.++||| ++| |++||+|++|||.++.+++|.+++.++
T Consensus        11 ~~~~~~g~~~~v~l~~~--~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l   88 (129)
T 2kpk_A           11 NPSELKGKFIHTKLRKS--SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF   88 (129)
T ss_dssp             CTTTSCSEEEEEEEEEC--SSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred             CchhcCCcEEEEEEEEC--CCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35556668889999985  46899999998876678999999999999 899 999999999999999999999999999


Q ss_pred             hCC--CCeEEEEEEeCCC
Q psy12310        109 QSS--DTSISLGIQRNPP  124 (201)
Q Consensus       109 k~~--g~~v~L~v~R~~~  124 (201)
                      +..  +..|.|+|.|+..
T Consensus        89 ~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           89 QSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             HHSCTTEEEEEEEEECSC
T ss_pred             HhCCCCCeEEEEEEeCCC
Confidence            876  7889999999764

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.62  E-value=5.3e-15  Score=105.56  Aligned_cols=82  Identities=27%  Similarity=0.440  Sum_probs=72.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecC--------CCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~--------~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      ..++|++.+.   .+|||+|.||.+        ...+++|..|.++||| . ||++||+|++|||.++.++++.+++..+
T Consensus         3 ~~~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~   78 (95)
T 1mfg_A            3 MEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLL   78 (95)
T ss_dssp             EEEEEEEECS---SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             eEEEEEECCC---CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHh
Confidence            3567888875   379999999874        3568999999999999 8 9999999999999999999999999888


Q ss_pred             hCCCCeEEEEEEeCC
Q psy12310        109 QSSDTSISLGIQRNP  123 (201)
Q Consensus       109 k~~g~~v~L~v~R~~  123 (201)
                      +..+..+.|+|.|+.
T Consensus        79 ~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           79 KTFQNTVELIIVREV   93 (95)
T ss_dssp             HHCCSEEEEEEEEEC
T ss_pred             hcCCCeEEEEEEeCC
Confidence            888999999999864

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.61  E-value=3.5e-15  Score=111.12  Aligned_cols=85  Identities=21%  Similarity=0.420  Sum_probs=76.0

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      .+.+.|+|.|..  .+|||++.+|.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++
T Consensus        23 ~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  100 (117)
T 2byg_A           23 MTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK  100 (117)
T ss_dssp             EEEEEEEEECBT--TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CceEEEEEEeCC--CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            357788898863  7899999998753     358999999999999 899 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEeCC
Q psy12310        110 SSDTSISLGIQRNP  123 (201)
Q Consensus       110 ~~g~~v~L~v~R~~  123 (201)
                      ..+..|.|+|.|.+
T Consensus       101 ~~g~~v~l~v~R~~  114 (117)
T 2byg_A          101 NTSEVVYLKVGKPT  114 (117)
T ss_dssp             TCCSEEEEEEEEEE
T ss_pred             cCCCeEEEEEEeCC
Confidence            88999999999975

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.61  E-value=3.4e-15  Score=109.37  Aligned_cols=85  Identities=21%  Similarity=0.265  Sum_probs=75.1

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecC----CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~----~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      .+.++|.|.|.+  .+|||+|.+|.+    ...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++.
T Consensus        14 ~~~~~v~l~k~~--~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (108)
T 2d92_A           14 PEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA   91 (108)
T ss_dssp             SSCEEEEEEECS--SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred             CceEEEEEEECC--CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            356789999864  689999999876    2467999999999999 888 99999999999999999999999999988


Q ss_pred             C-CCeEEEEEEeCC
Q psy12310        111 S-DTSISLGIQRNP  123 (201)
Q Consensus       111 ~-g~~v~L~v~R~~  123 (201)
                      . +..|.|+|.|..
T Consensus        92 ~~~~~v~l~v~R~~  105 (108)
T 2d92_A           92 VPPGLVHLGICSGP  105 (108)
T ss_dssp             SCSEEEEEEEECCC
T ss_pred             CCCCeEEEEEEcCC
Confidence            5 678999999865

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.61  E-value=9e-15  Score=103.46  Aligned_cols=83  Identities=17%  Similarity=0.255  Sum_probs=71.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|+|.|..  .+|||++.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+.
T Consensus         3 ~~r~v~l~r~~--~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   79 (91)
T 1g9o_A            3 LPRLCCLEKGP--NGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR   79 (91)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECTT-CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ccEEEEEEeCC--CcccEEEEecCC-CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            35689999864  689999999876 468999999999999 89999999999999999999999999999998866666


Q ss_pred             EEEEeCC
Q psy12310        117 LGIQRNP  123 (201)
Q Consensus       117 L~v~R~~  123 (201)
                      +.+.|.+
T Consensus        80 ~~~~~r~   86 (91)
T 1g9o_A           80 LLVVDPE   86 (91)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            6655543

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.61  E-value=6.3e-16  Score=111.78  Aligned_cols=88  Identities=23%  Similarity=0.422  Sum_probs=77.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.+++.|.+.  ..+|||.+.++.+...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+..+
T Consensus        11 ~~~~v~l~~~--~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   88 (103)
T 1wfv_A           11 DYFTVDMEKG--AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV   88 (103)
T ss_dssp             CCEECCEECC--TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEE
T ss_pred             eEEEEEEecC--CCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            5667888875  36799999999886678999999999999 899 9999999999999999999999998888678999


Q ss_pred             EEEEEeCCCCCc
Q psy12310        116 SLGIQRNPPGEK  127 (201)
Q Consensus       116 ~L~v~R~~~~~~  127 (201)
                      .|+|.|++...|
T Consensus        89 ~l~v~R~~~~~~  100 (103)
T 1wfv_A           89 RLLLKRGTGSGP  100 (103)
T ss_dssp             CEEEECTTCSSC
T ss_pred             EEEEEECCCCCC
Confidence            999999876543

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.61  E-value=1.1e-15  Score=112.33  Aligned_cols=86  Identities=21%  Similarity=0.307  Sum_probs=75.6

Q ss_pred             eEEEEEecCCCCceeEEEEEeecC---------CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~---------~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      .++|.|.|. ...+|||++.+|.+         ...+++|..|.++||| ++| |++||+|++|||.++.++++.+++.+
T Consensus        10 ~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A           10 LRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSCEEEECC-TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             cEEEEEEEC-CCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            456888876 45789999999974         2458999999999999 899 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCCCC
Q psy12310        108 FQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~~  125 (201)
                      ++..+..+.|+|.|+...
T Consensus        89 l~~~g~~v~l~v~r~~~~  106 (111)
T 1uju_A           89 LRSVGDTLTVLVCDGFES  106 (111)
T ss_dssp             HSSCSSEEEECCCCCCCC
T ss_pred             HHcCCCeEEEEEEECCCC
Confidence            998899999999987643

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=111.92  Aligned_cols=89  Identities=26%  Similarity=0.398  Sum_probs=78.8

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      +....++|+|.|..  .+|||++.+|.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+
T Consensus        14 ~~~~~~~v~l~r~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   91 (120)
T 2eno_A           14 YLVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDL   91 (120)
T ss_dssp             EEEEEEEEEEECCS--SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHH
T ss_pred             CCCceEEEEEEECC--CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34467889999964  7899999999874     568999999999999 899 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCCCC
Q psy12310        108 FQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~~  125 (201)
                      ++..+..|.|+|.|....
T Consensus        92 ~~~~g~~v~l~v~R~~~~  109 (120)
T 2eno_A           92 FRNAGYAVSLRVQHRLQV  109 (120)
T ss_dssp             HHHHCSEEEEEEEEEEEC
T ss_pred             HHcCCCeEEEEEEeCCcC
Confidence            987788999999997653

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=7e-15  Score=107.77  Aligned_cols=89  Identities=20%  Similarity=0.323  Sum_probs=78.2

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      +..+.++|+|.|..  .+|||++.+|.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++
T Consensus         5 ~~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   82 (110)
T 1um1_A            5 SSGYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR   82 (110)
T ss_dssp             SCCCEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHH
T ss_pred             CCCcEEEEEEEECC--CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34467899999863  6899999998753   358999999999999 899 9999999999999999999999999998


Q ss_pred             CCCCeEEEEEEeCCCC
Q psy12310        110 SSDTSISLGIQRNPPG  125 (201)
Q Consensus       110 ~~g~~v~L~v~R~~~~  125 (201)
                      ..+..+.|+|.|.+..
T Consensus        83 ~~~~~v~l~v~R~~~~   98 (110)
T 1um1_A           83 HGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             TCCSEEEEEEECCCHH
T ss_pred             cCCCeEEEEEEeCCcc
Confidence            8899999999998653

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.60  E-value=1.8e-15  Score=114.23  Aligned_cols=87  Identities=18%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      ..++|.|.+. ...+|||++.++.+.    ..+++|..|.++||| .+| |++||+|++|||+++.+++|.+++.+|+.+
T Consensus        25 ~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  103 (127)
T 1wg6_A           25 LTLEIPLNDS-GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS  103 (127)
T ss_dssp             EEEEEECSSS-TTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             eEEEEEEeeC-CCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            4556677633 468899999998753    247999999999999 888 999999999999999999999999999865


Q ss_pred             -------CCeEEEEEEeCCCC
Q psy12310        112 -------DTSISLGIQRNPPG  125 (201)
Q Consensus       112 -------g~~v~L~v~R~~~~  125 (201)
                             +..|.|+|.|....
T Consensus       104 ~~~~g~~~~~v~l~v~R~~~~  124 (127)
T 1wg6_A          104 MSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             HHHHHHHTCEEEEEEEECSCS
T ss_pred             hccccCCCCEEEEEEEeCCCC
Confidence                   78999999998753

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.60  E-value=3.8e-15  Score=125.80  Aligned_cols=88  Identities=22%  Similarity=0.363  Sum_probs=80.3

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      .+.++|+|.|. ...+|||+|.||.+...+++|.+|.+|||| . +||++||+|++|||+++.+++|.+++.+++..+..
T Consensus        76 ~~~r~V~L~k~-~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~  154 (263)
T 1z87_A           76 LQRRRVTVRKA-DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE  154 (263)
T ss_dssp             CSSEEECCCTT-TTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSC
T ss_pred             CccEEEEEEeC-CCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCe
Confidence            36788999986 357899999999987789999999999999 7 79999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCC
Q psy12310        115 ISLGIQRNPPG  125 (201)
Q Consensus       115 v~L~v~R~~~~  125 (201)
                      |.|+|.|.+..
T Consensus       155 V~L~V~R~~~~  165 (263)
T 1z87_A          155 VVLEVKYMKEV  165 (263)
T ss_dssp             CCEEEECCSSS
T ss_pred             EEEEEEeCccc
Confidence            99999997654

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=9.7e-15  Score=105.34  Aligned_cols=88  Identities=20%  Similarity=0.325  Sum_probs=76.9

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ....++|+|.|. ....|||.+.++.+...+++|..|.++||| .+||++||+|++|||.++.++++.+++..++. +..
T Consensus         8 ~~~~~~v~l~~~-~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~   85 (100)
T 2eeh_A            8 SDIIHSVRVEKS-PAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSR   85 (100)
T ss_dssp             CCEECCEEECCC-SSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSS
T ss_pred             CCeEEEEEEEEC-CCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCE
Confidence            345667899886 346799999998776779999999999999 89999999999999999999998888888877 799


Q ss_pred             EEEEEEeCCCC
Q psy12310        115 ISLGIQRNPPG  125 (201)
Q Consensus       115 v~L~v~R~~~~  125 (201)
                      +.|+|.|++..
T Consensus        86 v~l~v~R~g~~   96 (100)
T 2eeh_A           86 LHMMVRRMGSG   96 (100)
T ss_dssp             EEEEEEECSCC
T ss_pred             EEEEEEECCcC
Confidence            99999998753

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=6.3e-15  Score=108.84  Aligned_cols=87  Identities=26%  Similarity=0.390  Sum_probs=75.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-------CCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-------DSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-------~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      +.++|.|.|. ...+|||.|.++.+.       ..+++|..|.++||| . +||++||+|++|||.++.++++.++..++
T Consensus        10 ~~~~v~l~~~-~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l   88 (114)
T 1uew_A           10 QTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCEEEEEECC-TTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             cceEEEEEEC-CCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            5568899886 457899999987543       237799999999999 8 99999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEeCCCC
Q psy12310        109 QSSDTSISLGIQRNPPG  125 (201)
Q Consensus       109 k~~g~~v~L~v~R~~~~  125 (201)
                      +..+..+.|+|.|.+..
T Consensus        89 ~~~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           89 KDAGLSVTLRIIPQEEL  105 (114)
T ss_dssp             HHTTTEEEEEECCCSCC
T ss_pred             HcCCCeEEEEEEeCCcC
Confidence            88899999999998754

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.60  E-value=9.5e-15  Score=105.71  Aligned_cols=83  Identities=27%  Similarity=0.461  Sum_probs=74.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.+.|+|.|.+  .+|||++.++.+ ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++..++..+..+
T Consensus        11 ~~~~v~l~k~~--~glG~~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   87 (104)
T 3i4w_A           11 EPRRIVIHRGS--TGLGFNIVGGEX-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV   87 (104)
T ss_dssp             SCEEEEEECBT--TBTSEEEEECC--CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred             ccEEEEEEeCC--CccCEEEECCCC-CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            46679999863  689999999876 568999999999999 899 9999999999999999999999999999889999


Q ss_pred             EEEEEeCC
Q psy12310        116 SLGIQRNP  123 (201)
Q Consensus       116 ~L~v~R~~  123 (201)
                      .|+|.|.+
T Consensus        88 ~l~v~r~~   95 (104)
T 3i4w_A           88 TIIAQYKP   95 (104)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEECc
Confidence            99999874

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.60  E-value=7.5e-15  Score=106.91  Aligned_cols=87  Identities=17%  Similarity=0.269  Sum_probs=75.5

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecC---CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~---~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ..+.++|+| +.  ..+|||++.+|.+   ...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++.
T Consensus         9 ~~~~~~v~l-~~--~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~   85 (106)
T 3axa_A            9 EPEIITVTL-KK--QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   85 (106)
T ss_dssp             -CCEEEEEE-EC--SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CceEEEEEE-CC--CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            346778888 53  4789999999864   2458999999999999 899 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|+|.|.+..
T Consensus        86 ~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           86 TSSVVTLEVAKQGAI  100 (106)
T ss_dssp             CCSEEEEEEECCCSS
T ss_pred             CCCeEEEEEEeCCcc
Confidence            999999999998754

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.59  E-value=4.9e-15  Score=111.10  Aligned_cols=88  Identities=20%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC-CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSD  112 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g  112 (201)
                      ..+.++|.|.|.  ..+|||++.++.+. ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+
T Consensus        23 ~~~~~~v~l~k~--~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           23 PGELHIIELEKD--KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             SSEEEEEEEECC--SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             CCceEEEEEEeC--CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            346778999986  47899999999764 368999999999999 888 9999999999999999999999999998888


Q ss_pred             CeEEEEEEeCCCC
Q psy12310        113 TSISLGIQRNPPG  125 (201)
Q Consensus       113 ~~v~L~v~R~~~~  125 (201)
                      ..+.|+|.|.+..
T Consensus       101 ~~v~l~v~R~~~~  113 (124)
T 2daz_A          101 SKVKLVFIRNEDA  113 (124)
T ss_dssp             SEEEEEEEECTTH
T ss_pred             CeEEEEEEeCCCc
Confidence            8999999998753

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.59  E-value=1.9e-14  Score=106.97  Aligned_cols=90  Identities=18%  Similarity=0.385  Sum_probs=75.8

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCC-CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .......|.|.|. ...+|||++.+|.+. ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..
T Consensus        12 ~~~~~~~v~l~~~-~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   90 (119)
T 1x6d_A           12 QLDGIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   90 (119)
T ss_dssp             SCTTEEEEEEECC-TTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCCCeEEEEEEeC-CCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3345667778775 468899999999874 568999999999999 899 999999999999999999999999999777


Q ss_pred             -CCeEEEEEEeCCCC
Q psy12310        112 -DTSISLGIQRNPPG  125 (201)
Q Consensus       112 -g~~v~L~v~R~~~~  125 (201)
                       +..+.+++.|.+..
T Consensus        91 ~~~~~~l~v~R~~~~  105 (119)
T 1x6d_A           91 REPRQAVIVTRKLTP  105 (119)
T ss_dssp             TSSSEEEEEEECCCS
T ss_pred             CCCeEEEEEEcCCCc
Confidence             45566888887754

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.59  E-value=1.7e-15  Score=108.19  Aligned_cols=77  Identities=34%  Similarity=0.601  Sum_probs=70.4

Q ss_pred             CCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         49 RHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +..+|||++.+|.+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.|+|.|++..
T Consensus        14 ~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~   91 (94)
T 1vb7_A           14 GPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP   91 (94)
T ss_dssp             SSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred             CCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcC
Confidence            457899999999887778999999999999 89999999999999999999999999999988778999999998753

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.59  E-value=2.3e-15  Score=106.72  Aligned_cols=85  Identities=18%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|+|.|..  .+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         3 ~pr~v~l~k~~--~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2vsp_A            3 KPKLCRLAKGE--NGYGFHLNAIRG-LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT   79 (91)
T ss_dssp             CEEEEEEECBT--TBTSCCCBCCTT-CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE
T ss_pred             CcEEEEEEeCC--CcccEEEEeccC-CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            46789999864  579999988765 458899999999999 89999999999999999999999999999988789999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|.+..
T Consensus        80 l~v~r~~~~   88 (91)
T 2vsp_A           80 LLVCGKKAQ   88 (91)
T ss_dssp             EEEEC----
T ss_pred             EEEEeCCcc
Confidence            999997753

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.58  E-value=8.7e-15  Score=105.85  Aligned_cols=86  Identities=22%  Similarity=0.402  Sum_probs=75.4

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ...++|+|.|.  ..+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         5 ~~~r~v~l~k~--~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   81 (102)
T 2d90_A            5 SSGRVVVIKKG--SNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT   81 (102)
T ss_dssp             SSSEEEEEECC--SSSSSCEEEECSS-SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEE
T ss_pred             CCCEEEEEeeC--CCCccEEEEeecC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            35678999985  3689999998765 468999999999999 8999999999999999999999999998888788999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|.+..
T Consensus        82 ~l~v~r~~~~   91 (102)
T 2d90_A           82 TLLVLDKEAE   91 (102)
T ss_dssp             EEEECSTTCC
T ss_pred             EEEEEECCCc
Confidence            9999887654

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.58  E-value=9.7e-15  Score=105.78  Aligned_cols=84  Identities=26%  Similarity=0.444  Sum_probs=74.5

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecC--------CCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHH
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATN  106 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~--------~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~  106 (201)
                      ..+.++|++.+.   .+|||++.||.+        ...+++|..|.++||| . ||++||+|++|||.++.++++.+++.
T Consensus         9 ~~~~~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~   84 (103)
T 1n7t_A            9 AKQEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVS   84 (103)
T ss_dssp             SCCCEEEEEECS---SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             ccEEEEEEEccC---CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHH
Confidence            345678999875   479999999875        3568999999999999 8 99999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEeCC
Q psy12310        107 FFQSSDTSISLGIQRNP  123 (201)
Q Consensus       107 ~ik~~g~~v~L~v~R~~  123 (201)
                      .++..+..+.|+|.|+.
T Consensus        85 ~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           85 LLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHCCSEEEEEEECCC
T ss_pred             HhhcCCCeEEEEEEecC
Confidence            99888999999999864

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.58  E-value=1.4e-14  Score=106.08  Aligned_cols=86  Identities=15%  Similarity=0.285  Sum_probs=74.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCC------------CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLD------------SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~------------~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      +..+|+|.|. ...+|||++.++.+..            .+++|..|.++||| .+||++||+|++|||.++.+++|.++
T Consensus         7 ~~~~v~l~~~-~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~   85 (109)
T 1q3o_A            7 KEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV   85 (109)
T ss_dssp             EEEEEEEECC-TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CcEEEEEEEC-CCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            4567888765 4678999999987632            26899999999999 89999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeCCC
Q psy12310        105 TNFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~~~  124 (201)
                      +.+++..+..+.|+|.|...
T Consensus        86 ~~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           86 VNMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             HHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHHHhCCCEEEEEEEECCC
Confidence            99998888899999988653

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.58  E-value=4e-15  Score=110.19  Aligned_cols=88  Identities=19%  Similarity=0.277  Sum_probs=77.7

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECC-CCCHHHHHHHHhC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSR-DLRHKDATNFFQS  110 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~-~~~~~~av~~ik~  110 (201)
                      .+.++|.|.|. ...+|||++.+|.+.   ..+++|..|.++||| .+| |++||+|++|||.++. ++++.+++.+++.
T Consensus        19 ~~~~~v~l~k~-~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~   97 (117)
T 2o2t_A           19 RHVEVFELLKP-PSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK   97 (117)
T ss_dssp             SCEEEEEEECC-SSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEEEEC-CCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence            46788999986 357899999998742   358999999999999 899 9999999999999998 9999999999988


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|+|.|++..
T Consensus        98 ~~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           98 AKDTVQLVIARGSLP  112 (117)
T ss_dssp             CCSEEEEEEESSCCG
T ss_pred             CCCEEEEEEEeCCcc
Confidence            899999999998753

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.57  E-value=2.9e-14  Score=104.57  Aligned_cols=86  Identities=24%  Similarity=0.438  Sum_probs=76.1

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      +.+.+.|.|.+.+  .+|||.+.++.+  .+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+.
T Consensus        13 ~~~~~~v~l~~~~--~~lG~~l~~~~~--~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~   88 (111)
T 2dlu_A           13 WGHVEEVELINDG--SGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGN   88 (111)
T ss_dssp             CSEEEEEEEECCS--SCCCEEEECCSS--SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCS
T ss_pred             cCceEEEEEEeCC--CccCEEEeccCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4467889998863  679999998765  58999999999999 899 99999999999999999999999999987789


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .+.|+|.|++..
T Consensus        89 ~v~l~v~R~~~~  100 (111)
T 2dlu_A           89 SVRMLVARDPAG  100 (111)
T ss_dssp             EEEEEEEESCTT
T ss_pred             eEEEEEEeCCCC
Confidence            999999997754

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.57  E-value=8.1e-15  Score=110.65  Aligned_cols=88  Identities=14%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHH
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDAT  105 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av  105 (201)
                      ...+.|+|.|.+...+|||++.+|.+.         ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++
T Consensus        28 ~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~  107 (128)
T 1nf3_C           28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVT  107 (128)
T ss_dssp             TTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHH
T ss_pred             CccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            356789999874357899999998642         237999999999999 899 999999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEEeCCC
Q psy12310        106 NFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       106 ~~ik~~g~~v~L~v~R~~~  124 (201)
                      .+++..+..|.|+|.|.+.
T Consensus       108 ~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C          108 DMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHTTTSEEEEEECCCC
T ss_pred             HHHHcCCCeEEEEEEECCc
Confidence            9998888889999999875

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.57  E-value=2.2e-14  Score=101.74  Aligned_cols=82  Identities=22%  Similarity=0.318  Sum_probs=71.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|+|.|.  ..+|||.+.+.    .+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         3 ~~r~v~l~~~--~~g~G~~l~~~----~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~   76 (91)
T 2f5y_A            3 RYRQITIPRG--KDGFGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII   76 (91)
T ss_dssp             EEEEEEEECB--TTBTSEEEECS----SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             ceEEEEEEeC--CCCccEEEecC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4568999885  36799999764    46999999999999 89999999999999999999999999999988888999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|.+..
T Consensus        77 l~v~R~~~~   85 (91)
T 2f5y_A           77 LLVWRMVPQ   85 (91)
T ss_dssp             EEEEECC--
T ss_pred             EEEEeCCCC
Confidence            999997653

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.57  E-value=2.3e-14  Score=107.14  Aligned_cols=91  Identities=23%  Similarity=0.403  Sum_probs=78.2

Q ss_pred             CCCCceEEEEEecCCCCceeEEEEEeec----CCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         34 QPHQNTFTVVIKRPNRHHSWGLRIAGGC----DLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        34 ~~~~~~~~V~L~r~~~~~~~Gf~i~gG~----~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      ....+.++|+|.|. ...+|||.+.++.    +...+++|..|.++||| ++| |++||+|++|||+++.++++.++..+
T Consensus        11 ~~~~~~~~v~l~k~-~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~   89 (122)
T 1v5q_A           11 VVHTETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQL   89 (122)
T ss_dssp             CCCEEEEEEEECCC-SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHH
T ss_pred             cccceeEEEEEEeC-CCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34557889999886 4588999999873    23568999999999999 899 99999999999999999999999988


Q ss_pred             HhCC--CCeEEEEEEeCCCC
Q psy12310        108 FQSS--DTSISLGIQRNPPG  125 (201)
Q Consensus       108 ik~~--g~~v~L~v~R~~~~  125 (201)
                      ++..  +..+.|+|.|++..
T Consensus        90 l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           90 LRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HHHHTTTTCEEEEEEEECCC
T ss_pred             HHhCCCCCeEEEEEEECCcc
Confidence            8765  78999999998764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.57  E-value=1.5e-14  Score=102.90  Aligned_cols=84  Identities=15%  Similarity=0.311  Sum_probs=72.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..+.|+|.|.+  .+|||++.++ +...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+..+
T Consensus         4 ~~r~v~l~k~~--~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   80 (93)
T 3o46_A            4 SVKIIRLVKNR--EPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAI   80 (93)
T ss_dssp             CCEEEEEEESS--SCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEE
T ss_pred             cEEEEEEEeCC--CCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            35678998863  6899999987 33578999999999999 888 9999999999999999999999999998887799


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|...
T Consensus        81 ~l~v~~~~~   89 (93)
T 3o46_A           81 TFKIIPGSK   89 (93)
T ss_dssp             EEEEECC--
T ss_pred             EEEEEeCCC
Confidence            999987643

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=106.94  Aligned_cols=86  Identities=27%  Similarity=0.411  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCC-CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLD-SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      +.+.|.|.+.  ..+|||.+.++.+.. .+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+..
T Consensus        17 ~~~~v~l~~~--~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   94 (116)
T 2dm8_A           17 QEMIIEISKG--RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK   94 (116)
T ss_dssp             SCEEEEEECC--SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSE
T ss_pred             CEEEEEEEEC--CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4578889875  478999999988754 58999999999999 899 999999999999999999999999999888899


Q ss_pred             EEEEEEeCCCC
Q psy12310        115 ISLGIQRNPPG  125 (201)
Q Consensus       115 v~L~v~R~~~~  125 (201)
                      |.|+|.|++..
T Consensus        95 v~l~v~R~~~~  105 (116)
T 2dm8_A           95 VRLVVYRDEAH  105 (116)
T ss_dssp             EEEEEECCSSC
T ss_pred             EEEEEEeCCcc
Confidence            99999998754

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.57  E-value=1e-14  Score=107.32  Aligned_cols=87  Identities=20%  Similarity=0.382  Sum_probs=76.3

Q ss_pred             CceEEEEEecCCCCceeEEEEEe---ecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAG---GCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~g---G~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      .+.++|+|.|.  ..+|||++.+   |.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.++
T Consensus         3 ~~~~~v~l~k~--~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (113)
T 2g5m_B            3 MELFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL   80 (113)
T ss_dssp             CEEEEEECCCC--SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             eEEEEEEEEeC--CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35778999885  3789999998   4432   458999999999999 899 999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEeCCCC
Q psy12310        109 QSSDTSISLGIQRNPPG  125 (201)
Q Consensus       109 k~~g~~v~L~v~R~~~~  125 (201)
                      +..+..+.|+|.|.+..
T Consensus        81 ~~~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           81 RNTKGRVRFMIGRERPG   97 (113)
T ss_dssp             HHSCSSCEEEEEECCCC
T ss_pred             hcCCCeEEEEEEeCCCC
Confidence            88899999999998765

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.57  E-value=1.1e-14  Score=115.40  Aligned_cols=85  Identities=18%  Similarity=0.343  Sum_probs=75.0

Q ss_pred             CCceEEEEEecCCCCceeEEEEEe---ecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAG---GCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~g---G~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      ..+.++|+|.|..  .+|||+|.+   |.+.   ..+++|..|.+|||| .+| |++||+|++|||.++.+++|.+++.+
T Consensus        78 ~~~~~~v~l~k~~--~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~  155 (170)
T 3egg_C           78 RLELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASV  155 (170)
T ss_dssp             TSEEEEEEEECBT--TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHH
T ss_pred             CceEEEEEEEeCC--CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3467889999864  689999999   4332   357999999999999 888 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeC
Q psy12310        108 FQSSDTSISLGIQRN  122 (201)
Q Consensus       108 ik~~g~~v~L~v~R~  122 (201)
                      ++.++..|.|+|.|+
T Consensus       156 l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          156 LRNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHHCCSEEEEEEEEC
T ss_pred             HHcCCCEEEEEEEeC
Confidence            999999999999984

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.57  E-value=1.3e-14  Score=103.25  Aligned_cols=83  Identities=23%  Similarity=0.409  Sum_probs=71.7

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      .+.|+|.|.  ..+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.+++|.++..+++..+..+.+
T Consensus         6 ~r~v~l~~~--~~~~G~~l~~~~~-~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   82 (95)
T 3r68_A            6 PRVVVIKKG--SNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL   82 (95)
T ss_dssp             CEEEEEECB--TTBCSCEEEEC---CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             cEEEEEecC--CCcccEEEEecCC-CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            457889885  4789999998776 358999999999999 899999999999999999999999999999998888888


Q ss_pred             EEEeCCC
Q psy12310        118 GIQRNPP  124 (201)
Q Consensus       118 ~v~R~~~  124 (201)
                      ++.|.+.
T Consensus        83 ~~~r~~~   89 (95)
T 3r68_A           83 LVLDKEL   89 (95)
T ss_dssp             EEEECC-
T ss_pred             EEECCcc
Confidence            8888664

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=5.8e-15  Score=106.04  Aligned_cols=83  Identities=23%  Similarity=0.394  Sum_probs=74.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      ..++|+|.|.....+|||.+.+    ..+++|..|.++|||++||++||+|++|||.++.++++.+++.+++..+..+.|
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~----~~~~~V~~V~~~spA~agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l   83 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSI   83 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCS----SSSCBCCCBCSSSSSTTTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEE
T ss_pred             ccEEEEEEECCCCCcccEEEec----CCCeEEEEECCCCchhhCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4678999987434589999987    458999999999999999999999999999999999999999999888999999


Q ss_pred             EEEeCCC
Q psy12310        118 GIQRNPP  124 (201)
Q Consensus       118 ~v~R~~~  124 (201)
                      +|.|+..
T Consensus        84 ~v~R~~~   90 (96)
T 2edv_A           84 TVVRCTS   90 (96)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999873

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.57  E-value=1e-14  Score=103.18  Aligned_cols=83  Identities=14%  Similarity=0.204  Sum_probs=71.7

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      .+.|.|.|. .+.+|||++.++.+  .+++|.+|.++||| . +||++||+|++|||.++.++++.+++.+++.....+.
T Consensus         2 ~r~V~l~K~-~~~~lG~~i~~~~~--~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~   78 (88)
T 1kwa_A            2 SRLVQFQKN-TDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT   78 (88)
T ss_dssp             CEEEEEEEC-SSSCCCEEEECSCG--GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred             eEEEEEEeC-CCCceeEEEEeCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEE
Confidence            356889886 45789999987532  47999999999999 7 8999999999999999999999999999987755999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|.+.
T Consensus        79 l~v~r~~~   86 (88)
T 1kwa_A           79 FKIVPSYR   86 (88)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99998764

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.56  E-value=2.6e-14  Score=105.50  Aligned_cols=86  Identities=14%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCC-CCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAEL-KRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL-~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      ....+.|+|.|. ...+|||.+.++   ..+++|..|.++||| ++|| ++||+|++|||.++.++++.+++.+++..+.
T Consensus        23 ~~~~~~v~l~k~-~~~~lG~~i~~~---~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   98 (113)
T 1va8_A           23 GETVKIVRIEKA-RDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG   98 (113)
T ss_dssp             TEECEEEEEEEC-TTCCCCEEEEEC---SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE
T ss_pred             CCceEEEEEEeC-CCCceeEEEEeC---CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            346677999886 345899999876   358999999999999 8999 9999999999999999999999999988878


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .+.|+|.|.+..
T Consensus        99 ~v~l~v~r~~~~  110 (113)
T 1va8_A           99 TLTFVLIPSSGP  110 (113)
T ss_dssp             EEEEEEECCCCC
T ss_pred             eEEEEEEECCcc
Confidence            999999987753

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.55  E-value=2.2e-14  Score=108.85  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=74.4

Q ss_pred             ceEEEEEecC--------CCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHH
Q psy12310         38 NTFTVVIKRP--------NRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        38 ~~~~V~L~r~--------~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      ....+.|.+.        +...+|||++.||.+.   ..+++|..|.++||| .+| |++||+|++|||+++.+++|.++
T Consensus        27 ~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~  106 (131)
T 1wfg_A           27 LIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV  106 (131)
T ss_dssp             EEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            4456777764        3467899999999865   238999999999999 899 99999999999999999999999


Q ss_pred             HHHHhCC--CCeEEEEEEeCCC
Q psy12310        105 TNFFQSS--DTSISLGIQRNPP  124 (201)
Q Consensus       105 v~~ik~~--g~~v~L~v~R~~~  124 (201)
                      +.+++..  +..|.|+|.|.+.
T Consensus       107 ~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A          107 YNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             HHHHHHTSSSSEEEEEEEEECS
T ss_pred             HHHHHhcCCCCEEEEEEEcCCC
Confidence            9999875  4899999999764

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.55  E-value=2.5e-14  Score=104.83  Aligned_cols=86  Identities=22%  Similarity=0.389  Sum_probs=74.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|.|.+. ...++||.+.+.   ..+++|..|.++||| ++| |++||+|++|||.++.++++.++..+++..+..+
T Consensus         2 ~~~~v~L~k~-~~~glG~~i~~~---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v   77 (106)
T 2la8_A            2 EKFNVDLMKK-AGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKV   77 (106)
T ss_dssp             EEEEEEECCB-SSSTTCCEEEEC---SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCE
T ss_pred             eEEEEEEEeC-CCCccCEEEEeC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Confidence            4678999854 457799998872   468999999999999 899 9999999999999999999999999999888889


Q ss_pred             EEEEEeCCCCCc
Q psy12310        116 SLGIQRNPPGEK  127 (201)
Q Consensus       116 ~L~v~R~~~~~~  127 (201)
                      .|+|.|.....+
T Consensus        78 ~l~v~R~~~~~~   89 (106)
T 2la8_A           78 SMEVTRPKPGSG   89 (106)
T ss_dssp             EEEEEECCSCSS
T ss_pred             EEEEEeCCCCCC
Confidence            999999765533

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.55  E-value=1.9e-14  Score=104.70  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG  118 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~  118 (201)
                      +.|.|.|. .+.+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.+++|.+++.+++..+..+.|+
T Consensus         3 r~v~l~~~-~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   80 (106)
T 3ngh_A            3 RESKLSKQ-EGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL   80 (106)
T ss_dssp             EEEEEECC-TTCCCCCEEECCTT-CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEE
T ss_pred             EEEEEEeC-CCCeeCEEEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            56888886 45789999998876 467999999999999 8999999999999999999999999999998789999999


Q ss_pred             EEeCCC
Q psy12310        119 IQRNPP  124 (201)
Q Consensus       119 v~R~~~  124 (201)
                      |.|.+.
T Consensus        81 v~r~~~   86 (106)
T 3ngh_A           81 VLDGDS   86 (106)
T ss_dssp             EECHHH
T ss_pred             EEECCe
Confidence            998764

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.55  E-value=2.2e-14  Score=115.20  Aligned_cols=86  Identities=21%  Similarity=0.409  Sum_probs=78.0

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ...+.|.|.|. ...+|||++.||.+...+++|..|.+|||| .+||++||+|++|||.++.++++.+++.+++. +..+
T Consensus        83 ~~~~~v~l~k~-~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v  160 (192)
T 3k1r_A           83 RKLKEVRLDRL-HPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTV  160 (192)
T ss_dssp             SSCEEEEEETT-STTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEE
T ss_pred             CceEEEEEEeC-CCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeE
Confidence            35678999987 357899999999877778999999999999 89999999999999999999999999999988 8999


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|.+.
T Consensus       161 ~l~v~r~g~  169 (192)
T 3k1r_A          161 SIKVRHIGL  169 (192)
T ss_dssp             EEEEEECCE
T ss_pred             EEEEEECCc
Confidence            999999874

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.55  E-value=1.3e-14  Score=104.20  Aligned_cols=83  Identities=27%  Similarity=0.337  Sum_probs=71.2

Q ss_pred             EEEEecCCCCceeEEEEEeecCC--C-----CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Q psy12310         41 TVVIKRPNRHHSWGLRIAGGCDL--D-----SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSD  112 (201)
Q Consensus        41 ~V~L~r~~~~~~~Gf~i~gG~~~--~-----~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g  112 (201)
                      +|+|.|.  ..+|||++.++...  .     .+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+
T Consensus         5 ~v~l~~~--~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   82 (99)
T 3khf_A            5 PIVIHSS--GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSG   82 (99)
T ss_dssp             CEEEEC---CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CEEEEeC--CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            5778774  47899999877532  1     25689999999999 8999999999999999999999999999999889


Q ss_pred             CeEEEEEEeCCCC
Q psy12310        113 TSISLGIQRNPPG  125 (201)
Q Consensus       113 ~~v~L~v~R~~~~  125 (201)
                      ..+.|++.|.+..
T Consensus        83 ~~v~l~v~r~~~~   95 (99)
T 3khf_A           83 NKISLRTTALENT   95 (99)
T ss_dssp             SEEEEEEECSCSS
T ss_pred             CEEEEEEEECCCc
Confidence            9999999997754

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=1.4e-14  Score=104.59  Aligned_cols=87  Identities=23%  Similarity=0.374  Sum_probs=74.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +..+|.|.+.+...+|||.+.++.+...+++|..|.++||| .+||++||+|++|||.++.++.+.+++..++. +..+.
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~   86 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG-SKKLV   86 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSS-SSSCC
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcC-CCeEE
Confidence            45678888865678899999999877789999999999999 89999999999999999999999877766654 46889


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|++..
T Consensus        87 l~v~R~g~~   95 (101)
T 1uez_A           87 LSVYSAGRI   95 (101)
T ss_dssp             EEECCCCCC
T ss_pred             EEEEECCcc
Confidence            999987653

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.54  E-value=1.1e-13  Score=101.32  Aligned_cols=88  Identities=18%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ..+.+.+.|.+.  ..+|||++.++.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++.
T Consensus         9 ~~~~~~~~l~~~--~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   86 (111)
T 2koj_A            9 VGKRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS   86 (111)
T ss_dssp             SCEEEEEEEECB--TTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             cCcEEEEEEEEC--CCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            346778888875  47899999987643   258999999999999 899 99999999999999999999999999986


Q ss_pred             C--CCeEEEEEEeCCCC
Q psy12310        111 S--DTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~--g~~v~L~v~R~~~~  125 (201)
                      .  +..+.|+|.|++..
T Consensus        87 ~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           87 TKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             CCCSSEEEEEEEECCCC
T ss_pred             CCCCCeEEEEEEeCCCC
Confidence            4  78999999998754

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.54  E-value=4.8e-14  Score=104.83  Aligned_cols=82  Identities=20%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DT  113 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~  113 (201)
                      .+.++|+|.|.  ..+|||+|.++..   +.+|.+|.+  +| .+||++||+|++|||.++.+++|.+++.+|+..  |.
T Consensus        11 ~~~~~V~L~Kg--~~G~GFsI~~~~~---g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~   83 (113)
T 3soe_A           11 GLLVTIPLIKG--PKGFGFAIADSPT---GQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGA   83 (113)
T ss_dssp             CEEEEEEEECB--TTBSSEEEEEETT---EEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTC
T ss_pred             CCEEEEEEEEC--CCcccEEEeCCCC---CcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            36789999995  4789999977643   567999988  57 899999999999999999999999999999864  78


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .|.|+|.|++..
T Consensus        84 ~v~L~V~R~g~~   95 (113)
T 3soe_A           84 DVPLLILRGGPP   95 (113)
T ss_dssp             EEEEEEEESSCC
T ss_pred             EEEEEEEECCcc
Confidence            999999998864

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.54  E-value=1.1e-13  Score=98.56  Aligned_cols=81  Identities=23%  Similarity=0.442  Sum_probs=70.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|.|.|..  .+|||.+.+.    .+++|..|.++||| .+||++||+|++|||.++.++.+.+++..++ .+..+.
T Consensus         8 ~~r~v~l~~~~--~~~G~~l~~~----~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~   80 (93)
T 2dls_A            8 VQRCVIIQKDQ--HGFGFTVSGD----RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVA   80 (93)
T ss_dssp             CEEEEEEECSS--SSCCEEEECS----SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEE
T ss_pred             CCEEEEEEeCC--CceeEEEeCC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEE
Confidence            45678898854  6799999863    57999999999999 8999999999999999999999998887776 589999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|++..
T Consensus        81 l~v~R~~~~   89 (93)
T 2dls_A           81 LTLLGSSSG   89 (93)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEECCCC
Confidence            999997653

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.54  E-value=4.3e-14  Score=100.64  Aligned_cols=85  Identities=18%  Similarity=0.306  Sum_probs=74.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecC----CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~----~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      +.++|.|.+.  ..+|||.+.++.+    ...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..
T Consensus         4 ~~~~v~l~~~--~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (97)
T 2iwn_A            4 ETFDVELTKN--VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT   81 (97)
T ss_dssp             EEEEEEEECB--TTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred             EEEEEEEecC--CCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4677888874  4779999998753    2468999999999999 899 999999999999999999999999888888


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                      +..+.|+|.|++.
T Consensus        82 ~~~v~l~v~r~g~   94 (97)
T 2iwn_A           82 GQTVLLTLMRRGE   94 (97)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCC
Confidence            9999999998763

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.54  E-value=5.3e-14  Score=101.66  Aligned_cols=87  Identities=26%  Similarity=0.360  Sum_probs=72.9

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATN  106 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~  106 (201)
                      ..++|.|.+. ....|||++.++.+.         ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..
T Consensus         4 dp~~v~l~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~   82 (103)
T 2fcf_A            4 QPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE   82 (103)
T ss_dssp             SCEEEEECCC-C-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEeC-CCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            4578899876 456799999987542         247999999999999 899 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEeCCCC
Q psy12310        107 FFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus       107 ~ik~~g~~v~L~v~R~~~~  125 (201)
                      +++..+..+.|+|.|....
T Consensus        83 ~l~~~~~~v~l~v~r~~~~  101 (103)
T 2fcf_A           83 AIRKAGNPVVFMVQSIIST  101 (103)
T ss_dssp             HHHTCCSSEEEEEECCCCC
T ss_pred             HHHhCCCcEEEEEEECCCC
Confidence            9988877999999997653

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=104.90  Aligned_cols=86  Identities=12%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ...++|.|.|.  ..+|||.+.++.. ..+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         7 ~~~r~v~l~k~--~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   83 (106)
T 2eei_A            7 GQPRLCYLVKE--GGSYGFSLKTVQG-KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRV   83 (106)
T ss_dssp             SSSEEEEEECC--SSSCSCCEECCSS-CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEE
T ss_pred             CCCEEEEEEEC--CCCCCEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            35668999985  5789999988765 568999999999999 8999999999999999999999999998888778899


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|++.|.+..
T Consensus        84 ~l~v~r~~~~   93 (106)
T 2eei_A           84 MFLLVDKETD   93 (106)
T ss_dssp             EEEECCTTTS
T ss_pred             EEEEEcCchh
Confidence            9999987654

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.54  E-value=5.4e-14  Score=98.91  Aligned_cols=83  Identities=20%  Similarity=0.375  Sum_probs=69.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v  115 (201)
                      +.++|+|.|..  .+|||.+.++.+ ..+++|..+ ++|||.+||++||+|++|||.++.++++.+++.+++.  .+..+
T Consensus         3 ~~~~v~l~k~~--~g~G~~~~~~~~-~~~~~v~~v-~~spA~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v   78 (88)
T 3bpu_A            3 ELITVHIVKGP--MGFGFTIADSPG-GGGQRVKQI-VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEV   78 (88)
T ss_dssp             EEEEEEEECBT--TBSSCEEEECTT-SSSEEEEEC-CC--CCTTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEE
T ss_pred             cEEEEEEEcCC--CceeEEEEecCC-CCcEEEEEe-cCChhHhCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEE
Confidence            57789999863  789999997755 457888876 9999978999999999999999999999999988874  48899


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|++.
T Consensus        79 ~l~v~R~g~   87 (88)
T 3bpu_A           79 TLLVQRQTR   87 (88)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEeCCc
Confidence            999999763

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.54  E-value=8.6e-14  Score=99.76  Aligned_cols=83  Identities=20%  Similarity=0.332  Sum_probs=72.3

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      .+.++|.|.+. ...+|||++.+   ...+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+..
T Consensus         7 ~~~~~v~l~~~-~~~glG~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~   82 (96)
T 2qkv_A            7 LEKFNVDLMKK-AGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK   82 (96)
T ss_dssp             CCCEEEEEECB-TTBCCCEEEEE---CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CceEEEEEEeC-CCCCccEEEEe---CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence            35778999764 35779999877   2368999999999999 899 999999999999999999999999899988889


Q ss_pred             EEEEEEeCC
Q psy12310        115 ISLGIQRNP  123 (201)
Q Consensus       115 v~L~v~R~~  123 (201)
                      +.|+|.|..
T Consensus        83 v~l~v~R~~   91 (96)
T 2qkv_A           83 VSMEVTRPK   91 (96)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999999864

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.53  E-value=5.1e-14  Score=101.92  Aligned_cols=74  Identities=30%  Similarity=0.470  Sum_probs=65.2

Q ss_pred             CCceeEEEEEeecCC------------CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCe
Q psy12310         49 RHHSWGLRIAGGCDL------------DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTS  114 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~------------~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~  114 (201)
                      ...+|||++.||.+.            ..+++|..|.++||| .+||++||+|++|||.++.+++|.+++..++.. +..
T Consensus        17 ~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~   96 (104)
T 3sfj_A           17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV   96 (104)
T ss_dssp             TEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSE
T ss_pred             CCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence            345799999988763            457999999999999 899999999999999999999999999999765 789


Q ss_pred             EEEEEEeC
Q psy12310        115 ISLGIQRN  122 (201)
Q Consensus       115 v~L~v~R~  122 (201)
                      +.|+|.|.
T Consensus        97 v~l~v~R~  104 (104)
T 3sfj_A           97 VRLLVTRQ  104 (104)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999884

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=100.71  Aligned_cols=80  Identities=21%  Similarity=0.424  Sum_probs=70.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|+|.|..  .+|||.+.++    .+++|..|.++||| .+||++||+|++|||.++.++++.++..+++..+..+.
T Consensus         2 ~~r~v~l~~~~--~g~G~~~~~~----~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   75 (83)
T 2kv8_A            2 RVRSVEVARGR--AGYGFTLSGQ----APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLH   75 (83)
T ss_dssp             CEEEEEECCCS--SCCSCBCCCS----SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEE
T ss_pred             CcEEEEEEeCC--CcccEEEEcC----CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            35689999864  7799998764    37999999999999 89999999999999999999999999999988778899


Q ss_pred             EEEEeCC
Q psy12310        117 LGIQRNP  123 (201)
Q Consensus       117 L~v~R~~  123 (201)
                      |+|.|+.
T Consensus        76 l~v~R~~   82 (83)
T 2kv8_A           76 MVIAEGV   82 (83)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999863

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.53  E-value=6e-14  Score=111.31  Aligned_cols=86  Identities=30%  Similarity=0.485  Sum_probs=77.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      +...|+|.|.+  .+|||++.+|.+.     ..+++|..|.++||| ++| |++||+|++|||.++.++++.+++.+++.
T Consensus         5 ~~~~v~l~~~~--~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (196)
T 3gsl_A            5 EYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   82 (196)
T ss_dssp             EEEEEEEECBT--TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEEEEECC--CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56789999864  6799999999875     468999999999999 899 99999999999999999999999989998


Q ss_pred             CCCeEEEEEEeCCCC
Q psy12310        111 SDTSISLGIQRNPPG  125 (201)
Q Consensus       111 ~g~~v~L~v~R~~~~  125 (201)
                      .+..+.|++.|.+..
T Consensus        83 ~g~~v~l~v~r~~~~   97 (196)
T 3gsl_A           83 AGSIVRLYVMRRKPP   97 (196)
T ss_dssp             SCSEEEEEEEEECCC
T ss_pred             CCCcEEEEEEecCCC
Confidence            899999999997744

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-13  Score=103.02  Aligned_cols=92  Identities=17%  Similarity=0.310  Sum_probs=77.1

Q ss_pred             CCCCCCCCceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHH
Q psy12310         30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        30 ~~~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      .+-..+..+.+.|.+.+.  ..+|||.+.++.+.   ..+++|..|.++||| .+| |++||+|++|||.++.++++.++
T Consensus        22 ~y~~~~~~~~~~v~l~~~--~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~   99 (121)
T 2kom_A           22 SYNTKKIGKRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEV   99 (121)
T ss_dssp             CCCCCCSCEEEEEEEECC--TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHH
T ss_pred             cccCccCCeEEEEEEEcC--CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHH
Confidence            344444456788888875  46799999987643   258999999999999 899 99999999999999999999999


Q ss_pred             HHHHhCC--CCeEEEEEEeCC
Q psy12310        105 TNFFQSS--DTSISLGIQRNP  123 (201)
Q Consensus       105 v~~ik~~--g~~v~L~v~R~~  123 (201)
                      +.+++..  +..|.|+|.|++
T Consensus       100 ~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A          100 VSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             HHHHHHCCSSCEEEEEEEECC
T ss_pred             HHHHhcCCCCCEEEEEEEeCC
Confidence            9888764  789999999975

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.52  E-value=7.6e-14  Score=103.54  Aligned_cols=84  Identities=27%  Similarity=0.470  Sum_probs=74.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|..  .+|||++.++.+ ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++..+..+
T Consensus        14 ~~~~v~l~k~~--~glG~~l~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   90 (119)
T 1tp5_A           14 EPRRIVIHRGS--TGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV   90 (119)
T ss_dssp             SCEEEEEECTT--SCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred             ccEEEEEEECC--CCccEEEecCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            56789999864  669999999875 468999999999999 899 9999999999999999999999888888889999


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|++.|.+.
T Consensus        91 ~l~v~r~~~   99 (119)
T 1tp5_A           91 TIIAQYKPE   99 (119)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEEECCc
Confidence            999998753

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.52  E-value=1.2e-13  Score=102.44  Aligned_cols=85  Identities=16%  Similarity=0.293  Sum_probs=73.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ...+|+|.|. ....|||++.+|.+...+++|..|.++||| .+| |++||+|++|||.++.+.++.++..+++..+..+
T Consensus        24 ~~~~V~l~~~-~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v  102 (114)
T 2gzv_A           24 VPGKVTLQKD-AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV  102 (114)
T ss_dssp             CCEEEEEECC-TTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             CCEEEEEEEC-CCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4568999886 456699999998876678999999999999 899 9999999999999998889999999998777789


Q ss_pred             EEEEEeCC
Q psy12310        116 SLGIQRNP  123 (201)
Q Consensus       116 ~L~v~R~~  123 (201)
                      .|+|.+..
T Consensus       103 ~l~v~~~~  110 (114)
T 2gzv_A          103 TIHYNKLQ  110 (114)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEecc
Confidence            99987643

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=3.4e-14  Score=104.24  Aligned_cols=89  Identities=22%  Similarity=0.430  Sum_probs=77.8

Q ss_pred             CCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         33 AQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        33 ~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      .....+.+.|+|.|.  ..+|||.+.++.+ ..+++|..|.++||| .+| |++||+|++|||+++.++++.+++.+++.
T Consensus        10 ~~~~~~~~~v~l~k~--~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~   86 (113)
T 1um7_A           10 GGDAREPRKIILHKG--STGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR   86 (113)
T ss_dssp             CCCCCSEEEEEEECC--SSCSSBCCBCCST-TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS
T ss_pred             CcCCCceEEEEEEEC--CCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            334457888999986  3789999998876 578999999999999 899 99999999999999999999999988988


Q ss_pred             CCCeEEEEEEeCCC
Q psy12310        111 SDTSISLGIQRNPP  124 (201)
Q Consensus       111 ~g~~v~L~v~R~~~  124 (201)
                      .+..+.|+|.|.+.
T Consensus        87 ~~~~v~l~v~r~~~  100 (113)
T 1um7_A           87 AGQSVTIVAQYRPE  100 (113)
T ss_dssp             CCSEEEEEEECCHH
T ss_pred             CCCcEEEEEEECcc
Confidence            88999999998653

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.51  E-value=4.7e-14  Score=101.87  Aligned_cols=89  Identities=20%  Similarity=0.333  Sum_probs=74.9

Q ss_pred             CCCCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        30 ~~~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      +.......+.+.++|.+.  ..+|||.+.+.    .+++|..|.++||| ++||++||+|++|||.++.++++.+++.++
T Consensus         7 ~~~~~~~~~~~~v~l~~~--~~g~G~~~~~~----~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l   80 (100)
T 1whd_A            7 GEGDPENGEKLQITIRRG--KDGFGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEI   80 (100)
T ss_dssp             TCSSCCCCEEEEEEEECC--SSSSSCBCCCS----SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCCccccceEEEEEECC--CCeeeEEEeCC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            333334457788999875  36799988764    57999999999999 899999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEeCCC
Q psy12310        109 QSSDTSISLGIQRNPP  124 (201)
Q Consensus       109 k~~g~~v~L~v~R~~~  124 (201)
                      +..+..+.|+|.|...
T Consensus        81 ~~~~~~v~l~v~R~~~   96 (100)
T 1whd_A           81 RSCPSEIILLVWRVSG   96 (100)
T ss_dssp             HHCSSEEEEEEEECCS
T ss_pred             HcCCCeEEEEEEECCC
Confidence            8877789999999764

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=98.89  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--  111 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--  111 (201)
                      +.+.+.|.|.|..  .+|||+|.++.  ...+||.+|.+||+|  ...|++||.|++|||+++.+++|.+++++|+..  
T Consensus         3 ~g~~k~V~l~K~~--~~LG~tI~~~g--~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~   78 (95)
T 3gge_A            3 KGIEKEVNVYKSE--DSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK   78 (95)
T ss_dssp             CEEEEEEEEECCS--SCCCEEEECSS--SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             CCeEEEEEEEECC--CCceEEEEcCC--CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence            3467889999964  88999998642  246899999999999  467999999999999999999999999999875  


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                      +..++|.+.+..+
T Consensus        79 g~~~~L~lv~p~~   91 (95)
T 3gge_A           79 EELFTMKLIEPKK   91 (95)
T ss_dssp             TCEEEEEEEEECS
T ss_pred             CCEEEEEEECccc
Confidence            6789999887654

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.51  E-value=7.3e-14  Score=98.74  Aligned_cols=78  Identities=23%  Similarity=0.389  Sum_probs=68.1

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      +.|+|.+......|||.+.+      +++|.+|.++||| ++| |++||+|++|||.++.++++.+++.+++.++..+.|
T Consensus         2 l~v~l~~~~~~~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L   75 (88)
T 3e17_A            2 IGVLLMKSRANEEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL   75 (88)
T ss_dssp             EEEEEECBTTBCCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred             eEEEEEeCCCCCCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            35677765456789999976      5999999999999 888 999999999999999999999999999999889999


Q ss_pred             EEEeCC
Q psy12310        118 GIQRNP  123 (201)
Q Consensus       118 ~v~R~~  123 (201)
                      ++.+..
T Consensus        76 ~v~~~~   81 (88)
T 3e17_A           76 VVLRDL   81 (88)
T ss_dssp             EECCC-
T ss_pred             EEeCCC
Confidence            997654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.51  E-value=1.5e-13  Score=105.28  Aligned_cols=90  Identities=27%  Similarity=0.388  Sum_probs=74.6

Q ss_pred             CCceEEEEEecCC--CCceeEEEEEeecCC------------CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCC
Q psy12310         36 HQNTFTVVIKRPN--RHHSWGLRIAGGCDL------------DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLR  100 (201)
Q Consensus        36 ~~~~~~V~L~r~~--~~~~~Gf~i~gG~~~------------~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~  100 (201)
                      ....++|.|.+.+  ...+|||++.+|.+.            ..+++|..|.++||| ++||++||+|++|||.++.+++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~  100 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT  100 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence            3456778887642  234799999998752            368999999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCC-CCeEEEEEEeCCCC
Q psy12310        101 HKDATNFFQSS-DTSISLGIQRNPPG  125 (201)
Q Consensus       101 ~~~av~~ik~~-g~~v~L~v~R~~~~  125 (201)
                      +.++..+++.. |..+.|+|.|++..
T Consensus       101 ~~~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A          101 HDQARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             HHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred             HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            99999999874 78999999998865

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=3.9e-13  Score=99.48  Aligned_cols=84  Identities=23%  Similarity=0.296  Sum_probs=73.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.+.|.|.+..  .+|||.+.++.+  .+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+.
T Consensus        19 ~~~~v~l~~~~--~~lG~~~~~~~~--~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~   94 (117)
T 1uit_A           19 EPRHVKVQKGS--EPLGISIVSGEK--GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCEEEEEECSS--CCCCEEEEECTT--SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEEEeCC--CCccEEEEccCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            45678898853  789999998765  58999999999999 89999999999999999999999988877777789999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|++..
T Consensus        95 l~v~r~~~~  103 (117)
T 1uit_A           95 ILAQYNPHV  103 (117)
T ss_dssp             EEECCCSCC
T ss_pred             EEEEECCch
Confidence            999998754

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.50  E-value=2.1e-13  Score=98.56  Aligned_cols=87  Identities=24%  Similarity=0.291  Sum_probs=71.4

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecC--CCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhC-
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQS-  110 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~--~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-  110 (201)
                      ..+.+.|.+.|. .+.+|||++.+...  ...+++|..|.++||| . ++|++||+|++|||.++.++++.++..+++. 
T Consensus         7 ~~~~~~v~l~k~-~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A            7 GDNCREVHLEKR-RGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET   85 (101)
T ss_dssp             TCCCEEEEEECC-TTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred             CCceEEEEEEeC-CCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            345677888876 34689999975321  1226999999999999 6 7799999999999999999999999999987 


Q ss_pred             -CCCeEEEEEEeCC
Q psy12310        111 -SDTSISLGIQRNP  123 (201)
Q Consensus       111 -~g~~v~L~v~R~~  123 (201)
                       .+..|.|+|.|..
T Consensus        86 ~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           86 KSQTSVTLSIVHCP   99 (101)
T ss_dssp             TTSSEEEEEECCCC
T ss_pred             CCCCeEEEEEEeCC
Confidence             6889999998854

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=1.4e-13  Score=98.02  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=68.2

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ......+.+.++....+|||.+.+|       +|..|.++||| ++||++||+|++|||.++.++++.++..+++..+..
T Consensus         9 ~~~~~~~~i~~~~~~~~lG~~~~~G-------~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   81 (90)
T 1y7n_A            9 MGNVTTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   81 (90)
T ss_dssp             CSSCEEEEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             cCCcceEEEEeCCCccccCeEecCC-------EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3344556666665678899999653       89999999999 899999999999999999999999999999878899


Q ss_pred             EEEEEEeC
Q psy12310        115 ISLGIQRN  122 (201)
Q Consensus       115 v~L~v~R~  122 (201)
                      +.|+|.+.
T Consensus        82 v~l~v~p~   89 (90)
T 1y7n_A           82 IHMKTMPA   89 (90)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            99998764

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.50  E-value=9.2e-14  Score=103.44  Aligned_cols=84  Identities=27%  Similarity=0.358  Sum_probs=71.2

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCC-CCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhCC----
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLD-SPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQSS----  111 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~----  111 (201)
                      ...+.+.+.   .+|||++.||.+.. .+++|.+|.++||| .+ ||++||+|++|||.++.+++|.+++.+++..    
T Consensus        19 ~~~~~~~~~---~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~   95 (118)
T 1v6b_A           19 VRLLRIKKE---GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQG   95 (118)
T ss_dssp             EEEEEEESC---SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCC---CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcC
Confidence            445666654   47999999998653 35999999999999 77 9999999999999999999999999888754    


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      +..|.|+|.|....
T Consensus        96 g~~v~l~v~r~~~~  109 (118)
T 1v6b_A           96 GDWIDLVVAVCPPK  109 (118)
T ss_dssp             CSEEEEEEECCCSC
T ss_pred             CCeEEEEEEeCCcc
Confidence            78999999996543

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.50  E-value=1.9e-13  Score=100.62  Aligned_cols=85  Identities=28%  Similarity=0.368  Sum_probs=72.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ...+|.+.+. +..+|||.+.++.+...+++|..|.+++|| .+||++||+|++|||.++.++.+.+++.+++.. ..+.
T Consensus        15 ~~~~v~~~~~-~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~   92 (114)
T 1x5n_A           15 KEKKVFISLV-GSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLT   92 (114)
T ss_dssp             SSEEEEECCC-SSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEE
T ss_pred             CcEEEEEEEc-CCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEE
Confidence            4466777655 467899999999877789999999999999 899999999999999999999988888777755 6899


Q ss_pred             EEEEeC-CC
Q psy12310        117 LGIQRN-PP  124 (201)
Q Consensus       117 L~v~R~-~~  124 (201)
                      |+|.|+ +.
T Consensus        93 l~v~r~~g~  101 (114)
T 1x5n_A           93 ISIVAAAGR  101 (114)
T ss_dssp             EEECSSTTT
T ss_pred             EEEEcCCCC
Confidence            999887 53

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.49  E-value=2.2e-13  Score=109.44  Aligned_cols=87  Identities=20%  Similarity=0.403  Sum_probs=78.0

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ...+.|.|.|. ...+|||++.+|.+...+++|..|.++||| .+ ||++||+|++|||+++.+++|.++..+++..+..
T Consensus         6 ~~~~~v~l~~~-~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   84 (200)
T 2qt5_A            6 KGSTVVELMKK-EGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGER   84 (200)
T ss_dssp             EEEEEEEEECC-TTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSE
T ss_pred             CCCEEEEEEeC-CCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            35667888775 468899999999887788999999999999 77 9999999999999999999999999999888999


Q ss_pred             EEEEEEeCCC
Q psy12310        115 ISLGIQRNPP  124 (201)
Q Consensus       115 v~L~v~R~~~  124 (201)
                      +.|+|.|++.
T Consensus        85 v~l~v~R~~~   94 (200)
T 2qt5_A           85 VVLEVEYELP   94 (200)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEeccCC
Confidence            9999999763

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.49  E-value=1e-13  Score=100.26  Aligned_cols=81  Identities=14%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      .+.|.|.|. .+.++||.+....+  .+++|.+|.++||| ++| |++||+|++|||.++.++++.++..+++..+..+.
T Consensus        13 ~~~v~l~K~-~~~~lG~~l~~~~~--~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~   89 (97)
T 2ejy_A           13 VRLIQFEKV-TEEPMGICLKLNEK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMIS   89 (97)
T ss_dssp             CEEEEEEEC-SSSCCSEEEEECTT--CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEE
T ss_pred             cEEEEEEeC-CCCCeeEEEEeCCC--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            457888886 45789999987543  58999999999999 899 99999999999999999999999999988888999


Q ss_pred             EEEEeC
Q psy12310        117 LGIQRN  122 (201)
Q Consensus       117 L~v~R~  122 (201)
                      |+|.+.
T Consensus        90 L~V~~~   95 (97)
T 2ejy_A           90 LKVIPN   95 (97)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            998864

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.48  E-value=6e-14  Score=103.56  Aligned_cols=86  Identities=19%  Similarity=0.238  Sum_probs=75.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..+++.|.+. ....|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+.
T Consensus        13 dp~~~~l~~~-~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   90 (114)
T 2edz_A           13 NPRECKLSKQ-EGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVT   90 (114)
T ss_dssp             CCEEEEEECC-TTCCCSCEEECCTT-CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEeCC-CCCcccEEEEEecC-CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            5677888776 46789999988765 468999999999999 89999999999999999999999999999987899999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|++..
T Consensus        91 l~v~R~~~~   99 (114)
T 2edz_A           91 LLVLDGDSY   99 (114)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEECCcc
Confidence            999997643

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.48  E-value=2e-13  Score=102.51  Aligned_cols=86  Identities=27%  Similarity=0.368  Sum_probs=73.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATN  106 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~  106 (201)
                      ..++|.+.+. ....|||.+.++.+.         ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..
T Consensus        24 ~p~~v~l~k~-~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~  102 (123)
T 2iwq_A           24 QPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE  102 (123)
T ss_dssp             CCEEEEECCC-TTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEec-CCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            4567888876 457899999886542         247999999999999 899 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEeCCC
Q psy12310        107 FFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       107 ~ik~~g~~v~L~v~R~~~  124 (201)
                      +++..+..+.|+|.|...
T Consensus       103 ~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          103 AIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHHCCSSEEEEEECCCC
T ss_pred             HHHcCCCeEEEEEEECCc
Confidence            998887899999998764

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.48  E-value=7.9e-14  Score=99.95  Aligned_cols=82  Identities=20%  Similarity=0.293  Sum_probs=70.1

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~  116 (201)
                      ...+.|.+.  ..+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.++..+++.. +..+.
T Consensus        10 ~~~~~l~~~--~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   86 (98)
T 2jxo_A           10 PRLCTMKKG--PSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL   86 (98)
T ss_dssp             CEEEEEECT--TTCCCEEEECCCS-SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             cEEEEEEeC--CCcccEEEEecCC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence            456788885  3679999998765 458999999999999 899999999999999999999999999999877 45666


Q ss_pred             EEEEeCC
Q psy12310        117 LGIQRNP  123 (201)
Q Consensus       117 L~v~R~~  123 (201)
                      |+|.|++
T Consensus        87 l~v~R~g   93 (98)
T 2jxo_A           87 LVVDRET   93 (98)
T ss_dssp             EECCHHH
T ss_pred             EEEECCc
Confidence            8888765

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.48  E-value=2.9e-13  Score=99.25  Aligned_cols=85  Identities=22%  Similarity=0.367  Sum_probs=74.1

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCC-CCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAEL-KRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSI  115 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL-~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v  115 (201)
                      .++|.|.+. ...+|||.+.++.+ ..+++|..|.++||| .+|| ++||+|++|||.++.++++.++..+++.. +..+
T Consensus         2 ~~~v~l~~~-~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v   79 (112)
T 1qau_A            2 VISVRLFKR-KVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH   79 (112)
T ss_dssp             EEEEEEECB-TTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSE
T ss_pred             EEEEEEEcC-CCCceeEEEEecCC-CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcE
Confidence            467888775 45789999998765 468999999999999 8998 99999999999999999999999888764 7899


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|++.|++..
T Consensus        80 ~l~v~R~g~~   89 (112)
T 1qau_A           80 VVLILRGPEG   89 (112)
T ss_dssp             EEEEEECCTT
T ss_pred             EEEEEeCCcc
Confidence            9999998865

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.47  E-value=3.7e-13  Score=108.20  Aligned_cols=88  Identities=24%  Similarity=0.345  Sum_probs=77.4

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCC--CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCC--CCHHHHHHHHhC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLD--SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRD--LRHKDATNFFQS  110 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~--~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~--~~~~~av~~ik~  110 (201)
                      .+.+.|.|.+.  ..+|||++.+|.+..  .+++|..|.++||| ++| |++||+|++|||+++.+  ++|.+++.+++.
T Consensus        17 ~~~~~v~~~~~--~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~   94 (206)
T 3r0h_A           17 NKKILIELKVE--KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHT   94 (206)
T ss_dssp             TSCEEEEEECT--TSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHS
T ss_pred             CCEEEEEEEeC--CCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHh
Confidence            45678999885  478999999998754  37999999999999 887 99999999999999999  999999999998


Q ss_pred             CCCe-EEEEEEeCCCCC
Q psy12310        111 SDTS-ISLGIQRNPPGE  126 (201)
Q Consensus       111 ~g~~-v~L~v~R~~~~~  126 (201)
                      .+.. +.|+|.|.+...
T Consensus        95 ~~~~~v~l~v~R~~~~~  111 (206)
T 3r0h_A           95 TYEKAVTLTVFRADPPE  111 (206)
T ss_dssp             CCSSEEEEEEECCSSCC
T ss_pred             cCCCceEEEEEecccCC
Confidence            8777 999999987653

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.20  E-value=3.9e-15  Score=110.22  Aligned_cols=83  Identities=28%  Similarity=0.520  Sum_probs=72.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..++|.|.|. ...+|||++.+|.+...+++|..|.++||| + +||++||+|++|||.++.++++.+++.+++..+..+
T Consensus        27 ~~~~v~l~k~-~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v  105 (112)
T 2lob_A           27 GIRKVLLLKE-DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI  105 (112)
Confidence            4567888876 457899999999887778999999999999 7 899999999999999999999999999998887778


Q ss_pred             EEEEEe
Q psy12310        116 SLGIQR  121 (201)
Q Consensus       116 ~L~v~R  121 (201)
                      .|+|.+
T Consensus       106 ~l~V~~  111 (112)
T 2lob_A          106 EFEVVY  111 (112)
Confidence            887753

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=97.92  Aligned_cols=81  Identities=19%  Similarity=0.303  Sum_probs=69.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..+.|.|.|. ...+|||++.+.   ..+++|..|.++||| ++| |++||+|++|||.++ +.++.++..+++..+..+
T Consensus         6 ~~r~v~l~k~-~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v   80 (91)
T 2e7k_A            6 SGRMVGIRKT-AGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSV   80 (91)
T ss_dssp             CSCBCCBCCC-TTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSB
T ss_pred             CcEEEEEEEC-CCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeE
Confidence            3456888765 457899999873   468999999999999 765 999999999999999 889999999999888899


Q ss_pred             EEEEEeCC
Q psy12310        116 SLGIQRNP  123 (201)
Q Consensus       116 ~L~v~R~~  123 (201)
                      .|+|.|..
T Consensus        81 ~l~v~~~~   88 (91)
T 2e7k_A           81 ILKILSGP   88 (91)
T ss_dssp             CEEEECCS
T ss_pred             EEEEEECC
Confidence            99998754

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.47  E-value=2.3e-13  Score=108.63  Aligned_cols=74  Identities=30%  Similarity=0.470  Sum_probs=66.9

Q ss_pred             ceeEEEEEeecC--------CCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310         51 HSWGLRIAGGCD--------LDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR  121 (201)
Q Consensus        51 ~~~Gf~i~gG~~--------~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R  121 (201)
                      .+|||+|.||.+        ...+++|..|.++||| + ||++||+|++|||.++.+++|.+++.+++..+..|.|+|.|
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            569999999874        3568999999999999 8 99999999999999999999999999999888899999999


Q ss_pred             ---CCCC
Q psy12310        122 ---NPPG  125 (201)
Q Consensus       122 ---~~~~  125 (201)
                         ++..
T Consensus        81 ~~~~G~~   87 (195)
T 2qbw_A           81 EVGNGAK   87 (195)
T ss_dssp             ECSSSCE
T ss_pred             cCCCCCC
Confidence               5543

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=1.1e-12  Score=98.57  Aligned_cols=86  Identities=27%  Similarity=0.343  Sum_probs=72.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.+++.+... ....|||.+.++.++..+++|..|.++||| .+||++||+|++|||.++.++++.+++..++. +..+.
T Consensus        20 ~~~~v~v~~~-~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v~   97 (128)
T 1uf1_A           20 DEKKVNLVLG-DGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLI   97 (128)
T ss_dssp             SEEEEEEECC-SSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEE
T ss_pred             cEEEEEEEEC-CCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCeEE
Confidence            4455555543 236799999998877779999999999999 89999999999999999999999888877766 47999


Q ss_pred             EEEEeCCCC
Q psy12310        117 LGIQRNPPG  125 (201)
Q Consensus       117 L~v~R~~~~  125 (201)
                      |+|.|.+..
T Consensus        98 l~v~R~g~~  106 (128)
T 1uf1_A           98 LTVKDVGRL  106 (128)
T ss_dssp             EEEECCSCC
T ss_pred             EEEEECCcc
Confidence            999998865

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.46  E-value=3.8e-13  Score=99.24  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=68.9

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC-eEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT-SIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~-~v~  116 (201)
                      .++|.|.|.  ..+|||.+.+.    .+++|..|.++||| ++||++||+|++|||.++.++++.++..+++..+. .+.
T Consensus        24 ~r~v~l~k~--~~~~G~~l~~~----~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~   97 (109)
T 2vsv_A           24 PRSIRFTAE--EGDLGFTLRGN----APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIE   97 (109)
T ss_dssp             CEEEEECCG--GGCCCEEEESS----SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEE
T ss_pred             CEEEEEEeC--CCceeEEEeCC----CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence            467999885  47899999753    47899999999999 89999999999999999999999999999988755 599


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|...
T Consensus        98 l~V~~~~~  105 (109)
T 2vsv_A           98 MKVVSLLD  105 (109)
T ss_dssp             EEEESCC-
T ss_pred             EEEEECCC
Confidence            99988653

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=1e-12  Score=94.27  Aligned_cols=83  Identities=19%  Similarity=0.325  Sum_probs=70.1

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCe
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTS  114 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~  114 (201)
                      .+.+++.|.+.  ..+|||.+.....   +++|..|.++ ++.+||++||+|++|||.++.+++|.+++.+++..  +..
T Consensus         9 ~~~~~v~l~~~--~~g~G~~i~~~~~---Gv~V~~v~~~-a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~   82 (96)
T 1ujv_A            9 AELMTLTIVKG--AQGFGFTIADSPT---GQRVKQILDI-QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSE   82 (96)
T ss_dssp             CCCEEEEEECC--SSSSSEEEEEETT---EEEEEEESCG-GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSE
T ss_pred             ceEEEEEEEeC--CCceeEEEEcCCC---CEEEEEEecc-cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            35778999885  4789999976543   6899999984 33999999999999999999999999999999873  789


Q ss_pred             EEEEEEeCCCC
Q psy12310        115 ISLGIQRNPPG  125 (201)
Q Consensus       115 v~L~v~R~~~~  125 (201)
                      +.|+|.|++..
T Consensus        83 v~l~v~R~g~~   93 (96)
T 1ujv_A           83 TSLIIHRGSGP   93 (96)
T ss_dssp             EEEEEECCSSC
T ss_pred             EEEEEEECCCC
Confidence            99999998753

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=98.58  Aligned_cols=80  Identities=20%  Similarity=0.410  Sum_probs=67.8

Q ss_pred             eEEEEEecCCCCceeEEEEEee-------cCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG-------~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ...+.|.|. ...+|||.+.+.       .+...+++|..|.++||| .+||++||+|++|||.++.++++.++..+++.
T Consensus        16 ~~~v~l~~~-~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~   94 (104)
T 2z17_A           16 RKLVTVEKQ-DNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS   94 (104)
T ss_dssp             CCEEEEECC-TTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHH
T ss_pred             ceEEEEEeC-CCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            446778886 356899999983       233568999999999999 89999999999999999999999999999988


Q ss_pred             CCCeEEEEE
Q psy12310        111 SDTSISLGI  119 (201)
Q Consensus       111 ~g~~v~L~v  119 (201)
                      .+..+.|+|
T Consensus        95 ~~~~v~l~v  103 (104)
T 2z17_A           95 SGNLLTIET  103 (104)
T ss_dssp             TTTEEEEEC
T ss_pred             CCCcEEEEE
Confidence            766887765

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=4.6e-14  Score=106.13  Aligned_cols=85  Identities=26%  Similarity=0.343  Sum_probs=72.4

Q ss_pred             eEEEEEecCCCCceeEEEEEeec-----------------------C-----CCCCcEEEEECCCCcc-ccCCCCCCEEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGC-----------------------D-----LDSPIVITKVYPGTPA-AAELKRGDIIR   89 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~-----------------------~-----~~~pi~V~~V~~gspA-~agL~~GD~Il   89 (201)
                      .++|+|.|..  .+|||+|.+..                       .     ...+++|..|.++||| .+||++||+|+
T Consensus         9 ~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~   86 (126)
T 2yuy_A            9 PKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRII   86 (126)
T ss_dssp             CCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSSCCCC
T ss_pred             CEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCCCEEE
Confidence            4468998864  67999997521                       1     1256999999999999 89999999999


Q ss_pred             EECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        90 ~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +|||.++.++++.+++.+++..+..|.|+|.|.+..
T Consensus        87 ~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  122 (126)
T 2yuy_A           87 KVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG  122 (126)
T ss_dssp             EETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCCC
T ss_pred             EECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            999999999999999999998899999999987653

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.7e-13  Score=98.59  Aligned_cols=88  Identities=18%  Similarity=0.266  Sum_probs=73.2

Q ss_pred             CCCceEEEEEecCCCC-ceeEEEEEeecCCC-CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         35 PHQNTFTVVIKRPNRH-HSWGLRIAGGCDLD-SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~-~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .....+.|.|.|.+.. .+|||++.++.+.. .+++|..|.++||| ++||++||+|++|||.++.++++.++..+++. 
T Consensus        12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-   90 (114)
T 2d8i_A           12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ-   90 (114)
T ss_dssp             SCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS-
T ss_pred             ccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-
Confidence            3446788999987432 27999998865432 57999999999999 99999999999999999999988888888875 


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                       ..+.|+|.|...
T Consensus        91 -~~v~l~v~R~p~  102 (114)
T 2d8i_A           91 -PSLGLLVRTYPE  102 (114)
T ss_dssp             -SEEEEEEEECCC
T ss_pred             -CcEEEEEEECCC
Confidence             489999998754

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=92.50  Aligned_cols=82  Identities=21%  Similarity=0.415  Sum_probs=68.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|.+.++.....|||.+.      .+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..+..+
T Consensus         2 ~~~~v~~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   75 (92)
T 3cyy_A            2 KPTKVTLVKSAKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKL   75 (92)
T ss_dssp             CCEEEEEECSSTTSCCCEEEE------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CcEEEEEEeCCCCCCCCEEEe------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            356777777656678999876      35999999999999 899 9999999999999999999999999998887799


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|++..
T Consensus        76 ~l~v~r~g~~   85 (92)
T 3cyy_A           76 KMVVQRDERA   85 (92)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEeCCce
Confidence            9999997754

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.42  E-value=8.2e-13  Score=99.03  Aligned_cols=85  Identities=19%  Similarity=0.278  Sum_probs=73.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v  115 (201)
                      ..+.|.|.+.  ..+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.++..+++.. +..+
T Consensus         9 ~~r~v~l~~~--~~g~G~~l~~~~~-~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   85 (128)
T 2kjd_A            9 RPRLCTMKKG--PSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK   85 (128)
T ss_dssp             CCEEEEEECC--SSSCCEEEEECSS-SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEE
T ss_pred             CcEEEEEecC--CCcccEEEEecCC-CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEE
Confidence            4567888885  3679999998775 458999999999999 899999999999999999999999999999876 5677


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|++.|++..
T Consensus        86 ~l~v~R~g~~   95 (128)
T 2kjd_A           86 LLVVDRETDE   95 (128)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEEEeCCcc
Confidence            7999887643

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.41  E-value=1.2e-12  Score=104.91  Aligned_cols=89  Identities=22%  Similarity=0.388  Sum_probs=77.8

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      ..+.++|.|.|. ...+|||++.+|.+.    ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++
T Consensus         4 ~~~~~~v~l~~~-~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   82 (196)
T 1p1d_A            4 HTETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   82 (196)
T ss_dssp             CCEEEEEEEECB-TTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHH
T ss_pred             ccEEEEEEEEeC-CCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            447888999986 468899999998542    457999999999999 899 9999999999999999988999998998


Q ss_pred             CC--CCeEEEEEEeCCCC
Q psy12310        110 SS--DTSISLGIQRNPPG  125 (201)
Q Consensus       110 ~~--g~~v~L~v~R~~~~  125 (201)
                      ..  +..+.|+|.|++..
T Consensus        83 ~~~~g~~v~l~v~R~~~~  100 (196)
T 1p1d_A           83 DSSITSKVTLEIEFDVAE  100 (196)
T ss_dssp             TCCSSSEEEEEEEECSCS
T ss_pred             hCCCCCeEEEEEEecCCC
Confidence            76  78999999998754

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.40  E-value=2.3e-12  Score=96.84  Aligned_cols=73  Identities=27%  Similarity=0.458  Sum_probs=65.5

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCC
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPP  124 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~  124 (201)
                      ..+|||.+.+|.+  .+++|..|.++||| .+||++||+|++|||.++.++++.+++..++  ..+..+.|+|.|.+.
T Consensus        38 ~~~lG~~l~~~~~--~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  113 (124)
T 3tsv_A           38 GDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD  113 (124)
T ss_dssp             SSCCCEEEEECTT--SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred             CCceeEEEecCCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence            3679999998766  68999999999999 8999999999999999999999999888776  468999999999764

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.40  E-value=1.2e-12  Score=98.15  Aligned_cols=87  Identities=23%  Similarity=0.372  Sum_probs=75.4

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCC-CCCCEEEEECCEECCCCCHHHHHHHHhCC-CC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAEL-KRGDIIRKIGDYDSRDLRHKDATNFFQSS-DT  113 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL-~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~  113 (201)
                      .+.+.|.|.+. ...+|||.+.++.+ ..+++|..|.++||| .+|| ++||+|++|||.++.++++.++..+++.. +.
T Consensus         7 ~~~~~v~l~~~-~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~   84 (127)
T 1b8q_A            7 PNVISVRLFKR-KVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   84 (127)
T ss_dssp             CCSEEEEEECT-TTSCCSCCEEECTT-SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSS
T ss_pred             CceEEEEEEeC-CCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            35678899875 34789999988664 468999999999999 8998 99999999999999999999999999865 78


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .+.|++.|++..
T Consensus        85 ~v~l~v~R~g~~   96 (127)
T 1b8q_A           85 THVVLILRGPEG   96 (127)
T ss_dssp             CEEEEEECCCCS
T ss_pred             eEEEEEEeCCce
Confidence            999999998865

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.38  E-value=3.2e-12  Score=101.24  Aligned_cols=87  Identities=23%  Similarity=0.386  Sum_probs=75.1

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      ...+++.+.+..  .+|||.+.++.+.     ..+++|..|.++||| .+| |++||+|++|||.++.++++.+++.+++
T Consensus        99 ~~~~~v~l~~~~--~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  176 (196)
T 3gsl_A           99 EKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK  176 (196)
T ss_dssp             EEEEEEEEEEBT--TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHH
T ss_pred             cccEEEEEecCC--CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHH
Confidence            356677777753  5799999987653     247999999999999 888 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEeCCCC
Q psy12310        110 SSDTSISLGIQRNPPG  125 (201)
Q Consensus       110 ~~g~~v~L~v~R~~~~  125 (201)
                      .++..+.|+|.|++..
T Consensus       177 ~~~~~v~l~v~R~~~~  192 (196)
T 3gsl_A          177 NTYDVVYLKVAKPSNA  192 (196)
T ss_dssp             SCCEEEEEEEEEESCC
T ss_pred             cCCCeEEEEEeCCCCc
Confidence            8899999999998754

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.38  E-value=3.5e-12  Score=91.74  Aligned_cols=82  Identities=18%  Similarity=0.270  Sum_probs=66.1

Q ss_pred             ceEEEEEecCCC-CceeEEEEEeecCC-CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         38 NTFTVVIKRPNR-HHSWGLRIAGGCDL-DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        38 ~~~~V~L~r~~~-~~~~Gf~i~gG~~~-~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ..+.|.|.|.+. ..+|||++.++.+. ..+++|..|.++||| ++||++||+|++|||.++.++++.+...+++  ...
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~--~~~   83 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS--QPS   83 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH--SSE
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCe
Confidence            466788888642 34799999886532 357999999999999 9999999999999999999999999988887  356


Q ss_pred             EEEEEEe
Q psy12310        115 ISLGIQR  121 (201)
Q Consensus       115 v~L~v~R  121 (201)
                      +.|+|..
T Consensus        84 l~ltV~~   90 (94)
T 3kzd_A           84 LGLLVRT   90 (94)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888765

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.37  E-value=6e-12  Score=86.35  Aligned_cols=76  Identities=21%  Similarity=0.449  Sum_probs=63.0

Q ss_pred             EEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEE
Q psy12310         42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGI  119 (201)
Q Consensus        42 V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v  119 (201)
                      +....+.....|||.+.+      +++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..+..+.|+|
T Consensus         4 ~~~~~~~~~~~~g~~~~~------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   77 (81)
T 2rcz_A            4 VTLVKSRKNEEYGLRLAS------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV   77 (81)
T ss_dssp             EEEECCSTTCCCCEEEEE------EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEE
T ss_pred             EEEEECCCCCCCCEEEeC------CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEE
Confidence            333333356789998863      4899999999999 899 99999999999999999999999999987767999999


Q ss_pred             EeCC
Q psy12310        120 QRNP  123 (201)
Q Consensus       120 ~R~~  123 (201)
                      .|++
T Consensus        78 ~R~g   81 (81)
T 2rcz_A           78 QRDE   81 (81)
T ss_dssp             EC--
T ss_pred             EeCC
Confidence            8853

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.36  E-value=3.2e-12  Score=96.63  Aligned_cols=80  Identities=14%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--CCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDT  113 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~  113 (201)
                      ..+.+.|.+.  ..+|||.+.+.   ..+++|..|.++||| ++| |++||+|++|||.++.+.++.+++.+++.  .|.
T Consensus        27 ~~~~~~l~k~--~~glG~~i~~~---~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~  101 (126)
T 1wif_A           27 KVIQTKLTVG--NLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CEEEEEEECC--TTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSC
T ss_pred             ceEEEEEecC--CceEeEEEEcC---CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCC
Confidence            5677888874  47799999874   347899999999999 899 99999999999999999999999999987  488


Q ss_pred             eEEEEEEeC
Q psy12310        114 SISLGIQRN  122 (201)
Q Consensus       114 ~v~L~v~R~  122 (201)
                      .|.|+|.|+
T Consensus       102 ~v~l~V~R~  110 (126)
T 1wif_A          102 VLQIKAYRG  110 (126)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEEEC
Confidence            999999997

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.35  E-value=4.2e-12  Score=89.36  Aligned_cols=82  Identities=17%  Similarity=0.248  Sum_probs=65.7

Q ss_pred             eEEEEEecC-CCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCe
Q psy12310         39 TFTVVIKRP-NRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTS  114 (201)
Q Consensus        39 ~~~V~L~r~-~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~  114 (201)
                      .+.+.+.+. +....|||.+...   ..+++|..|.++||| .+||++||+|++|||.++.+.++.+...+++.  .+..
T Consensus         4 ~~~~~~~~~~~~~~~lG~~~~~~---~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~   80 (90)
T 2eaq_A            4 DMRISINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGH   80 (90)
T ss_dssp             EEEEEEECCTTCSSCCSEEEEEE---TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTE
T ss_pred             ceEEEEEecCCCCCcccEEEEec---CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCE
Confidence            345666543 2334799998754   247999999999999 89999999999999999977778888777764  4889


Q ss_pred             EEEEEEeCC
Q psy12310        115 ISLGIQRNP  123 (201)
Q Consensus       115 v~L~v~R~~  123 (201)
                      +.|+|.|++
T Consensus        81 v~l~v~R~g   89 (90)
T 2eaq_A           81 LVMDVRRYG   89 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            999999975

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.33  E-value=3.9e-12  Score=120.53  Aligned_cols=85  Identities=31%  Similarity=0.497  Sum_probs=77.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      +.++|.|.|..  .+|||+|.||.+.     ..+++|..|.+|||| .+| |++||+|++|||.++.+++|.+++.+++.
T Consensus        59 ~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  136 (721)
T 2xkx_A           59 EYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE  136 (721)
T ss_pred             eEEEEEEEeCC--CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc
Confidence            56789999864  6899999999874     568999999999999 888 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCC
Q psy12310        111 SDTSISLGIQRNPP  124 (201)
Q Consensus       111 ~g~~v~L~v~R~~~  124 (201)
                      ++..|.|+|.|.+.
T Consensus       137 ~g~~v~l~v~R~~~  150 (721)
T 2xkx_A          137 AGSIVRLYVMRRKP  150 (721)
T ss_pred             cccccceEEEeccc
Confidence            89999999999874

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.32  E-value=1.4e-11  Score=98.91  Aligned_cols=84  Identities=21%  Similarity=0.349  Sum_probs=71.9

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..+++.+.+. ....|||.+.++.   .+++|..|.++||| .+| |++||+|++|||+++.++++.+++.+++..+..+
T Consensus       113 ~~~~v~l~~~-~~~~lG~~~~~~~---~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v  188 (206)
T 3r0h_A          113 EKFNVDLMKK-AGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKV  188 (206)
T ss_dssp             EEEEEEEECC-TTCCCCEEEEECS---SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             cEEEEEEecC-CCCccCeEEEcCC---ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4667777664 3467999998653   47999999999999 888 9999999999999999999999999999888999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|....
T Consensus       189 ~L~V~R~~~~  198 (206)
T 3r0h_A          189 SMEVTRPKPT  198 (206)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEeCCCC
Confidence            9999996643

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.31  E-value=5.1e-12  Score=114.39  Aligned_cols=82  Identities=26%  Similarity=0.406  Sum_probs=73.8

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSI  115 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v  115 (201)
                      .+.|++.+.   .+|||.+.||.+  .+++|.+|.+|||| .+||++||+|++|||.++.++++.+++.+|+.  .|..|
T Consensus         2 ~r~V~l~k~---~~lG~~i~gg~~--~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v   76 (468)
T 3shw_A            2 MKLVKFRKG---DSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV   76 (468)
T ss_dssp             EEEEEEECC---SSCCEEEEEETT--TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEE
T ss_pred             ceEEEEecC---CccceEEEccCc--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            456888874   779999999976  68999999999999 89999999999999999999999999999987  68999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|.+..
T Consensus        77 ~L~V~r~g~~   86 (468)
T 3shw_A           77 TILAQKKKDV   86 (468)
T ss_dssp             EEEEEECHHH
T ss_pred             EEEEEECCcc
Confidence            9999997643

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.30  E-value=8.3e-12  Score=110.70  Aligned_cols=84  Identities=25%  Similarity=0.399  Sum_probs=73.8

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDT  113 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~  113 (201)
                      .....|.+.+.   .+|||++.||.+  .+++|..|.+|||| .+||++||+|++|||.++.++++.+++.+++.  .|.
T Consensus         8 ~~~~~v~~~k~---~~lG~~i~gg~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~   82 (391)
T 3tsz_A            8 PSMKLVKFRKG---DSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE   82 (391)
T ss_dssp             -CEEEEEEECC---SSCCEEEEEETT--TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTS
T ss_pred             CCcEEEEeecC---CceeEEEEecCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCC
Confidence            34567788765   469999999876  78999999999999 89999999999999999999999999999984  689


Q ss_pred             eEEEEEEeCCCC
Q psy12310        114 SISLGIQRNPPG  125 (201)
Q Consensus       114 ~v~L~v~R~~~~  125 (201)
                      .+.|+|.|++..
T Consensus        83 ~v~l~v~r~~~~   94 (391)
T 3tsz_A           83 EVTILAQKKKDV   94 (391)
T ss_dssp             EEEEEEEECHHH
T ss_pred             eEEEEEeeCCcc
Confidence            999999998653

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=2.4e-11  Score=90.58  Aligned_cols=88  Identities=16%  Similarity=0.320  Sum_probs=68.9

Q ss_pred             EEEEEecC--CCCceeEEEEEeec---CCCCCcEEEEECC--CCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         40 FTVVIKRP--NRHHSWGLRIAGGC---DLDSPIVITKVYP--GTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        40 ~~V~L~r~--~~~~~~Gf~i~gG~---~~~~pi~V~~V~~--gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .+|+|.+.  .....|||.+....   +...+++|..|.+  ++|| ++||++||+|++|||.++.++++.+...+++..
T Consensus        14 ~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~   93 (118)
T 2yub_A           14 YSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT   93 (118)
T ss_dssp             CEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred             ceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence            34555541  12345777776442   2346899999999  9999 899999999999999999999888888888876


Q ss_pred             CCeEEEEEEeCCCCCc
Q psy12310        112 DTSISLGIQRNPPGEK  127 (201)
Q Consensus       112 g~~v~L~v~R~~~~~~  127 (201)
                      +..+.|+|.|++....
T Consensus        94 g~~v~l~v~R~g~~~~  109 (118)
T 2yub_A           94 SQTLQLLIEHDPVPQR  109 (118)
T ss_dssp             SSCEEEEEEECSSCCC
T ss_pred             CCEEEEEEEECCEEEe
Confidence            7899999999886543

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=2.2e-12  Score=95.27  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~  116 (201)
                      .++|.|.|.  ..+|||.+.++    .+++|..|.+++|| .+||++||+|++|||.++.++++.++..+++.. +..+.
T Consensus        16 ~r~v~l~~~--~~~~G~~l~~~----~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~   89 (111)
T 1vae_A           16 PRGIHFTVE--EGDLGFTLRGN----TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVE   89 (111)
T ss_dssp             CCCCCEECC--SSCCSCCEESS----SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEEC
T ss_pred             CeEEEEEcC--CCcccEEEeCC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEE
Confidence            456788874  47899999764    46899999999999 899999999999999999988999999999876 45699


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|...
T Consensus        90 l~V~~~~~   97 (111)
T 1vae_A           90 MKVVSLLD   97 (111)
T ss_dssp             EEEECEEC
T ss_pred             EEEEecCC
Confidence            99987643

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=99.28  E-value=2.4e-11  Score=107.31  Aligned_cols=141  Identities=15%  Similarity=0.216  Sum_probs=97.4

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCCC-C
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPG-E  126 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~~-~  126 (201)
                      ..++|+.+..-.....+++|..|.++||| ++||++||+|++|||.++.++...++..+++.. |..|.|+|.|.+.. .
T Consensus        84 ~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~  163 (388)
T 1fc6_A           84 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSN  163 (388)
T ss_dssp             CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEE
T ss_pred             eEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcc
Confidence            35678887643111357999999999999 999999999999999999999888888888755 88999999998752 1


Q ss_pred             ccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310        127 KKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL  197 (201)
Q Consensus       127 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~  197 (201)
                      .......|.....+++.+....   ...    ...+.....+.+|||+  .+|+........+++++|.++++
T Consensus       164 ~~~~~l~r~~i~~~~v~~~~~~---~~~----~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~  229 (388)
T 1fc6_A          164 TRTLQLTRQKVTINPVTFTTCS---NVA----AAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGV  229 (388)
T ss_dssp             EEEEEEECBCCCCCCEEEEEEC---SCC----GGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEEEceeecCceeeeeec---ccc----ccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCC
Confidence            2333344444444444331110   000    0011112345689997  89988877788899999887765

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.27  E-value=3.1e-12  Score=105.05  Aligned_cols=85  Identities=18%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ...+.|+|.+.  ..+|||.+.++.+ ..+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++..+..+
T Consensus         8 ~~~r~v~l~k~--~~glG~~l~~~~~-~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v   84 (216)
T 2krg_A            8 LRPRLCTMKKG--PSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET   84 (216)
T ss_dssp             CCCEEEEEECC--SSSSCEEECCCSS-SCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEE
T ss_pred             cceEEEEEEeC--CCCceEEEEecCC-CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeE
Confidence            35667888885  3679999988765 458999999999999 8999999999999999999889999998887668888


Q ss_pred             -EEEEEeCCC
Q psy12310        116 -SLGIQRNPP  124 (201)
Q Consensus       116 -~L~v~R~~~  124 (201)
                       .|+|.|++.
T Consensus        85 ~~l~V~R~g~   94 (216)
T 2krg_A           85 KLLVVDRETD   94 (216)
T ss_dssp             EEEECCHHHH
T ss_pred             EEEEEEECCE
Confidence             888888664

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.25  E-value=2.8e-11  Score=96.98  Aligned_cols=85  Identities=26%  Similarity=0.435  Sum_probs=73.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      ..+.|++.+.  ..+|||.+.+|.+.    ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..
T Consensus       106 ~~~~v~l~~~--~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~  183 (200)
T 2qt5_A          106 RTVEVTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC  183 (200)
T ss_dssp             EEEEEEEECB--TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             eEEEEEEecC--CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4567777664  47799999988653    357899999999999 899 999999999999999999999999999888


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                      +..+.|+|.|++.
T Consensus       184 ~~~v~l~v~R~~~  196 (200)
T 2qt5_A          184 GQEATLLIEYDVS  196 (200)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEECCc
Confidence            8999999999764

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=2.8e-11  Score=90.54  Aligned_cols=87  Identities=24%  Similarity=0.309  Sum_probs=70.8

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC-
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~-  111 (201)
                      .+...+.+.+.+....|||.+......  ..+++|..|.++||| .+| |++||+|++|||.++.+  +.++..+++.. 
T Consensus        18 ~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~   95 (124)
T 1wh1_A           18 LELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEE   95 (124)
T ss_dssp             CEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSS
T ss_pred             ceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCC
Confidence            345566777765556799999876531  358999999999999 899 99999999999999985  67778888765 


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      +..+.|+|.|++..
T Consensus        96 g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           96 NKNFSLLIARPELQ  109 (124)
T ss_dssp             CCSCCEEEEECSSC
T ss_pred             CCEEEEEEEECCEE
Confidence            78999999998865

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.23  E-value=6.3e-11  Score=92.53  Aligned_cols=81  Identities=19%  Similarity=0.300  Sum_probs=67.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v  115 (201)
                      +.+.|.|.|. ....|||.+....   .+++|..|.++||| .+||++||+|++|||.++.++++..+..+++.. +..+
T Consensus         4 ~~r~v~l~k~-~~~~lG~~~~~~~---~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v   79 (166)
T 1w9e_A            4 DPREVILCKD-QDGKIGLRLKSID---NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKI   79 (166)
T ss_dssp             CCEEEEEECC-TTSCCSEEEEEET---TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred             CCEEEEEEeC-CCCcEeEEEEeCC---CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEE
Confidence            3567889886 4578999998753   57999999999999 899999999999999999999986666667654 6799


Q ss_pred             EEEEEeC
Q psy12310        116 SLGIQRN  122 (201)
Q Consensus       116 ~L~v~R~  122 (201)
                      .|+|+|+
T Consensus        80 ~l~vr~~   86 (166)
T 1w9e_A           80 TMTIRDR   86 (166)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999544

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.22  E-value=1.8e-11  Score=108.98  Aligned_cols=136  Identities=17%  Similarity=0.172  Sum_probs=85.5

Q ss_pred             ceeEEEEEeecCCCC--CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCCc
Q psy12310         51 HSWGLRIAGGCDLDS--PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK  127 (201)
Q Consensus        51 ~~~Gf~i~gG~~~~~--pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~~  127 (201)
                      .++||.+....+...  .++|..|.++||| +|||++||+|++|||.++.++.   ...+++..+..|.|++.|.+....
T Consensus        74 ~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~~~~  150 (403)
T 3k50_A           74 YGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVVGED  150 (403)
T ss_dssp             CSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC---
T ss_pred             cceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCcccc
Confidence            557777765443122  3789999999999 9999999999999999999885   345666678899999999875421


Q ss_pred             c---ccccccCCCCCCCCccccccccccccccccc-cccccccCCcccccc--cccCCCcc-------cchHHHHHHHHH
Q psy12310        128 K---AASGSRSVTPLPIVDYCQKESKASSASMSVV-NSFHDFLDHQHVHRA--QAVASPFE-------LSSEHDLNYVIK  194 (201)
Q Consensus       128 ~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~ig~~--~qf~~p~~-------~~s~~~i~~~~~  194 (201)
                      .   ....++....+..        +.....++.. ...- ..++.+|||+  ++|+...+       ....+++++|++
T Consensus       151 ~~~~~~~i~~~~~~l~~--------~r~~~~~pv~~~~v~-~~~~~~iGYI~i~~F~~~t~~~~~~~~~~l~~al~~l~~  221 (403)
T 3k50_A          151 GEVTGGVVPIGETTMPA--------SRSLVDKPVHRFEII-PWNGKKVGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQT  221 (403)
T ss_dssp             --CEEEEEEEEEEEECC--------CBCCCCCSEEEEEEE-EETTEEEEEEEECCBCCCSSTTCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccceEEEe--------eeeeeeccceeeeee-eeCCCcEEEEEEccccCcccccchhhHHHHHHHHHHHHH
Confidence            0   0001111110000        0000001111 0000 1245789997  99988653       678899999998


Q ss_pred             hcCC
Q psy12310        195 EQLG  198 (201)
Q Consensus       195 ~~~~  198 (201)
                      +|+.
T Consensus       222 ~~~~  225 (403)
T 3k50_A          222 GGVN  225 (403)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            8763

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.21  E-value=7.6e-11  Score=85.70  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=64.0

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CCCeE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS---SDTSI  115 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~---~g~~v  115 (201)
                      ..+.|.+.  ..+|||.+...   ..+.+|..|.+|||| +|||++||+|++|||.++...++.+....++.   ++..|
T Consensus        19 ~~l~l~~~--~~g~G~~l~~~---~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v   93 (101)
T 3qik_A           19 KRLLILPQ--EEDYGFDIEEK---NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL   93 (101)
T ss_dssp             EEEEECCC--SSSSSEEEEEE---TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEeC--CCcccEEEEcc---CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeE
Confidence            35566553  47799999864   346899999999999 99999999999999999987888988888876   58899


Q ss_pred             EEEEEe
Q psy12310        116 SLGIQR  121 (201)
Q Consensus       116 ~L~v~R  121 (201)
                      .|.|..
T Consensus        94 ~LLV~~   99 (101)
T 3qik_A           94 RLLVAT   99 (101)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            988863

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.15  E-value=1.6e-10  Score=92.46  Aligned_cols=85  Identities=22%  Similarity=0.386  Sum_probs=71.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      ..+++.+.+. ....|||.+....+.  ..+++|..|.++||| .+| |++||+|++|||.++.++++.++..+++..+.
T Consensus       107 ~~~~v~l~~~-~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~  185 (196)
T 1p1d_A          107 GTFHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED  185 (196)
T ss_dssp             SCEEEEECCC-SSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTT
T ss_pred             CcEEEEecCC-CCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4566777653 345699999876432  358999999999999 899 99999999999999999989999999987789


Q ss_pred             eEEEEEEeCC
Q psy12310        114 SISLGIQRNP  123 (201)
Q Consensus       114 ~v~L~v~R~~  123 (201)
                      .+.|+|.|++
T Consensus       186 ~v~l~v~R~~  195 (196)
T 1p1d_A          186 LVKLKIRKDE  195 (196)
T ss_dssp             CEEEEEECCC
T ss_pred             EEEEEEEeCC
Confidence            9999999975

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.10  E-value=3.2e-10  Score=107.39  Aligned_cols=84  Identities=27%  Similarity=0.466  Sum_probs=74.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..+.|.|.+.  ..+|||.+.++.+ ..+++|..|.+|||| .+| |++||+|++|||.++.++++.+++.+++..+..|
T Consensus       307 ~~~~v~l~~~--~~~lG~~i~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v  383 (721)
T 2xkx_A          307 EPRRIVIHRG--STGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV  383 (721)
T ss_pred             ceEEEEEEEC--CCCccEEEeccCC-CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeE
Confidence            4567888875  3679999998866 568999999999999 888 9999999999999999999999999999888899


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|...
T Consensus       384 ~L~v~r~~~  392 (721)
T 2xkx_A          384 TIIAQYKPE  392 (721)
T ss_pred             EEEEEeCch
Confidence            999998764

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.06  E-value=1.6e-10  Score=102.26  Aligned_cols=87  Identities=18%  Similarity=0.278  Sum_probs=71.5

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecC--CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC--
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS--  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~--~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~--  111 (201)
                      ....|.+.|. .+.+|||.|.++..  ...+++|..|.+|||| .+| |++||+|++|||.++.+++|.+++.+++..  
T Consensus       204 ~~~~V~i~k~-~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~  282 (388)
T 3suz_A          204 NCKELQLEKH-KGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKN  282 (388)
T ss_dssp             CCEEEEECCC-SSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTT
T ss_pred             cceEEEEECC-CCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccC
Confidence            4557888886 35789999988542  1235899999999999 888 999999999999999999999999899875  


Q ss_pred             CCeEEEEEEeCCCC
Q psy12310        112 DTSISLGIQRNPPG  125 (201)
Q Consensus       112 g~~v~L~v~R~~~~  125 (201)
                      +..+.|+|.|.+..
T Consensus       283 ~~~v~l~v~r~~~~  296 (388)
T 3suz_A          283 QTQVKLNIVSCPPV  296 (388)
T ss_dssp             CSCEEEEEEECCSC
T ss_pred             CCcccccccccccc
Confidence            45699999997654

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.78  E-value=1.9e-08  Score=76.19  Aligned_cols=60  Identities=20%  Similarity=0.291  Sum_probs=49.5

Q ss_pred             CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++|||.+||++||+|++|||.++.++...  ...+..  .|..+.|+|.|++..
T Consensus        56 ~~g~~V~~V~~~spA~aGL~~GD~I~~inG~~v~~~~~l--~~~l~~~~~g~~v~l~v~R~g~~  117 (134)
T 2l97_A           56 TSGVIVRSVQSNMPANGHLEKYDVITKVDDKEIASSTDL--QSALYNHSIGDTIKITYYRNGKE  117 (134)
T ss_dssp             CSCEEEEECSTTSGGGTTSCSSCEEEEETTEECCCHHHH--HHHHHHSSTTCEEEEEEEETTEE
T ss_pred             CCCEEEEEECCCCchHHCCCCCCEEEEECCEEcCCHHHH--HHHHHhCCCCCEEEEEEEECCEE
Confidence            367999999999998899999999999999999886443  334432  588999999998754

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.77  E-value=1.5e-08  Score=72.75  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=48.9

Q ss_pred             CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++|||.+||++||+|++|||.++.++.  +....+..  .+..+.|++.|++..
T Consensus         6 ~~Gv~V~~V~~~spA~~GL~~GD~I~~Ing~~v~~~~--dl~~~l~~~~~g~~v~l~v~R~g~~   67 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQ--EFIDYIHSKKVGDTVKINYKHGDKN   67 (100)
T ss_dssp             CCCEEEEEECTTSGGGGTCCTTCEEEEETTBCCSSHH--HHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CCCEEEEEeCCCCchHHCCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence            3579999999999994499999999999999998764  34445543  478999999998754

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.77  E-value=9.2e-09  Score=83.33  Aligned_cols=74  Identities=12%  Similarity=0.006  Sum_probs=55.5

Q ss_pred             eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCC-CEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Q psy12310         53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRG-DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE  126 (201)
Q Consensus        53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~G-D~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~  126 (201)
                      +|++...+.....+++|..|.++||| ++||++| |+|++|||+++.++.+.....+....+..+.|+|.|.+...
T Consensus         4 ~~~~~~~~~~~~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   79 (209)
T 3rle_A            4 SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLE   79 (209)
T ss_dssp             ----CCCTTSSSEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCC
T ss_pred             hhhhhhccCCCCCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCce
Confidence            44444444444567999999999999 9999999 99999999999988765443233455889999999986543

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.77  E-value=2.5e-09  Score=75.92  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG  125 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~  125 (201)
                      +++|..|.++||| . ||++||+|++|||.++.++  .+...++...  |..+.|+|.|++..
T Consensus         2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            5789999999999 7 9999999999999999875  4566667654  88999999998754

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.76  E-value=9.6e-09  Score=71.90  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPP  124 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~  124 (201)
                      ++.|..+.++||| ++||++||+|++|||.++.++...  ..++..  .+..+.|+|.|++.
T Consensus        20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~--~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVM--NTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHH--HHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHH--HHHHHhcCCCCEEEEEEEECCE
Confidence            4667778888888 899999999999999999876443  344443  47899999999874

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.75  E-value=1.7e-08  Score=71.97  Aligned_cols=56  Identities=13%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             cEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh-CC-CCeEEEEEEeCCC
Q psy12310         67 IVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ-SS-DTSISLGIQRNPP  124 (201)
Q Consensus        67 i~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik-~~-g~~v~L~v~R~~~  124 (201)
                      .+|..|.++||| ++||++||+|++|||..+.++.  +....+. .. +..+.|+|.|++.
T Consensus         4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~--d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWD--AVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHH--HHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHHhcCCCcEEEEEEECCC
Confidence            478899999999 8999999999999999998764  3444443 33 4789999999885

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.75  E-value=2.3e-08  Score=72.97  Aligned_cols=59  Identities=27%  Similarity=0.472  Sum_probs=49.9

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| .+||++||+|++|||.++.++  .+....++. +..+.|+|.|++..
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~~   93 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRET   93 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-CSSEEEEEEETTEE
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCEE
Confidence            467999999999999 899999999999999999864  555556655 68899999998754

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.74  E-value=1.3e-08  Score=71.35  Aligned_cols=59  Identities=22%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh-CCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ-SSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik-~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| .+||++||+|++|||.++.++  .+....+. ..+..+.|++.|++..
T Consensus         4 ~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~~   64 (91)
T 2zpm_A            4 IEPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGSP   64 (91)
T ss_dssp             --CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred             cCeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCeE
Confidence            45789999999999 899999999999999999875  44444554 3478999999998743

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.73  E-value=1.2e-08  Score=72.68  Aligned_cols=59  Identities=17%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| . ||++||+|++|||.++.++  .+...++..  .+..+.|+|.|++..
T Consensus         4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   65 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQ   65 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred             CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            357899999999999 7 9999999999999999875  344455543  488999999998754

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.68  E-value=2.2e-09  Score=94.92  Aligned_cols=74  Identities=22%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             EEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Q psy12310         42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ  120 (201)
Q Consensus        42 V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~  120 (201)
                      +++.+......|||.+.+|       +|..|.+|||| .+||++||+|++|||.++.+++|.+++.+++..+..+.|+|.
T Consensus       299 v~l~~~~~~~~lG~~i~~g-------~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~  371 (388)
T 3suz_A          299 VLIKRPDLKYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTM  371 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEeecCCCCccceEEecC-------EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence            4443322345688887654       88999999999 899999999999999999999999999999988899999886


Q ss_pred             eC
Q psy12310        121 RN  122 (201)
Q Consensus       121 R~  122 (201)
                      +.
T Consensus       372 p~  373 (388)
T 3suz_A          372 PA  373 (388)
T ss_dssp             --
T ss_pred             ec
Confidence            54

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.67  E-value=6.3e-08  Score=70.05  Aligned_cols=57  Identities=19%  Similarity=0.239  Sum_probs=45.4

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPP  124 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~  124 (201)
                      ++.|..+.|+||| ++||++||+|++|||.++.++.....  ++.  ..+..+.|+|.|++.
T Consensus        38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~--~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNT--LFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHH--HHHHHTTCSEEEEEEEETTE
T ss_pred             EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHH--HHHhcCCCCeEEEEEEECCE
Confidence            3556677778888 89999999999999999998865542  333  457899999999874

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.64  E-value=1.6e-07  Score=73.00  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=61.1

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      .++++|.+. ....|||.+..      + +|..|.++||| .+||++||+|++|||.++.++.+..+...+++.+..+.+
T Consensus        89 ~~~v~l~~~-~~~~lG~~~~~------g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l  160 (166)
T 1w9e_A           89 ERTITMHKD-STGHVGFIFKN------G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI  160 (166)
T ss_dssp             CEEEEEECC-TTSCCSEEEET------T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred             cEEEEEecC-CCCcEeEEEeC------C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEE
Confidence            456666643 34668998872      2 89999999999 899999999999999999999998888778888888887


Q ss_pred             EEE
Q psy12310        118 GIQ  120 (201)
Q Consensus       118 ~v~  120 (201)
                      .+.
T Consensus       161 ~v~  163 (166)
T 1w9e_A          161 TIM  163 (166)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.62  E-value=7.4e-08  Score=70.20  Aligned_cols=59  Identities=22%  Similarity=0.384  Sum_probs=48.9

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| .+||++||+|++|||.++.++  .+....++ .+..+.|+|.|++..
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~-~g~~v~l~v~R~g~~   93 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL-TESPLLLEVRRGNDD   93 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH-HCSSEEEEEEETTEE
T ss_pred             CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh-CCCeEEEEEEECCEE
Confidence            357999999999999 899999999999999999875  44444553 478899999998743

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.60  E-value=8.6e-08  Score=82.25  Aligned_cols=60  Identities=17%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEe-CCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQR-NPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R-~~~~  125 (201)
                      ..+++|..|.++||| ++||++||+|++|||.++.++..  ....+.  ..|..+.|+|.| +++.
T Consensus       241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~~g~~  304 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADA--LVAAVRSKAPGATVALTFQDPSGGS  304 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHH--HHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCCCE
Confidence            357899999999999 89999999999999999987643  334443  358999999999 7754

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.59  E-value=1.3e-07  Score=81.12  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=50.5

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| ++||++||+|++|||+++.++.  +....++.  .|..+.|+|.|+++.
T Consensus       243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~  305 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQ  305 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHH--HHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred             CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEE
Confidence            357899999999999 9999999999999999998753  44455553  589999999998764

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.58  E-value=4.3e-08  Score=85.33  Aligned_cols=59  Identities=24%  Similarity=0.392  Sum_probs=50.1

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||+++.++..  ....+..  .|..+.|+|.|+++.
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~  324 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGKP  324 (345)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHH--HHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEE
Confidence            57899999999999 99999999999999999987644  3444543  589999999998865

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.50  E-value=1.7e-07  Score=70.28  Aligned_cols=57  Identities=23%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPP  124 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~  124 (201)
                      ..+++|..|.++||| .+ |++||+|++|||.++.++.  +....+.  ..+..+.|+| |++.
T Consensus        24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~~--dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLT--TYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHH--HHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEE-ECCE
Confidence            357999999999999 88 9999999999999998764  3444554  3488999999 8774

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.49  E-value=2.1e-07  Score=83.25  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=51.3

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||+++.++.+..........|..+.|+|.|+++.
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKP  324 (436)
T ss_pred             cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            57899999999999 99999999999999999998766554433334589999999998865

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.43  E-value=2.9e-07  Score=82.77  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=50.9

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||+++.++.+..........|..+.|+|.|+++.
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~  343 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKP  343 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            67899999999999 89999999999999999998755544322234589999999998765

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.43  E-value=8.6e-07  Score=79.28  Aligned_cols=59  Identities=24%  Similarity=0.366  Sum_probs=51.7

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||+++.++  .+...+++..+..+.|+|.|++..
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~  422 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNES  422 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence            47999999999999 999999999999999999864  566777877767999999998754

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.42  E-value=3.8e-07  Score=84.80  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=55.0

Q ss_pred             ceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      ..+|+.+....   .+++|..|.++||| ++||++||+|++|||.++......+   +++  ..|..|.|+|.|++..
T Consensus       485 ~~lG~~~~~~~---~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~~~~l~~---~l~~~~~g~~v~l~v~R~g~~  556 (597)
T 4fgm_A          485 VNFGAKYKASP---QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKR---ILERYIPGDTVTIHAFRRDEL  556 (597)
T ss_dssp             CCCSEEEEEET---TEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCTTTHHH---HHTTCCTTCEEEEEEEETTEE
T ss_pred             cccceEEeccC---CeEEEEEeCCCChHHHCCCCCCCEEEEECCEECCHHHHHH---HHHhcCCCCEEEEEEEECCEE
Confidence            46888876542   36999999999999 9999999999999999995333333   343  3589999999998865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.34  E-value=3.1e-07  Score=89.04  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCC--------Ccc-ccC--CCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEE
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPG--------TPA-AAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISL  117 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~g--------spA-~ag--L~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L  117 (201)
                      ..++|+.+.--   ...++|..|.+|        ||| ++|  |+ ||+|++|||+++.++.  ++..++++. |..|.|
T Consensus       736 ~~g~G~~~~~~---~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          736 SGRIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             CCBCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred             cceecEEEEEe---CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence            34677776542   246899999998        999 899  99 9999999999999876  456677665 899999


Q ss_pred             EEEeCCC
Q psy12310        118 GIQRNPP  124 (201)
Q Consensus       118 ~v~R~~~  124 (201)
                      +|.|.+.
T Consensus       810 ~v~r~~~  816 (1045)
T 1k32_A          810 RLSGKGG  816 (1045)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            9999763

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.32  E-value=2.9e-06  Score=68.52  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             ceeEEEEEeecCC---CCCcEEEEECCCCcc-ccCCCC-CCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCC
Q psy12310         51 HSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAELKR-GDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPP  124 (201)
Q Consensus        51 ~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~agL~~-GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~  124 (201)
                      ..+|+.+..-...   ..+++|..|.++||| .+||++ ||+|++|||. +.++...  ...++. .+..+.|+|.|.+.
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l--~~~l~~~~g~~v~l~v~r~~~  171 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDL--FSLIETHEAKPLKLYVYNTDT  171 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCH--HHHHHHTTTSCEEEEEEETTT
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHH--HHHHHhCCCCeEEEEEEECCc
Confidence            3578887642211   257899999999999 999999 9999999998 8776443  334443 58899999999764


Q ss_pred             C
Q psy12310        125 G  125 (201)
Q Consensus       125 ~  125 (201)
                      .
T Consensus       172 ~  172 (209)
T 3rle_A          172 D  172 (209)
T ss_dssp             T
T ss_pred             e
Confidence            3

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.30  E-value=1.5e-06  Score=74.65  Aligned_cols=58  Identities=28%  Similarity=0.474  Sum_probs=49.5

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||.++.++  .+....++. +..+.|+|.|++..
T Consensus       256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~-~~~v~l~v~R~g~~  314 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRET  314 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT-CSSEEEEEEETTEE
T ss_pred             CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC-CCeEEEEEEECCEE
Confidence            57999999999999 999999999999999999875  444555654 68999999998754

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.30  E-value=4.9e-07  Score=78.47  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=50.0

Q ss_pred             CCcEEEEECCCCcc-ccCCCC-----------CCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKR-----------GDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~-----------GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++           ||+|++|||+++.++...  ...+.  ..|..+.|+|.|+++.
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl--~~~l~~~~~g~~v~l~v~R~g~~  323 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDL--YRILDQCKVGDEVTVEVLRGDHK  323 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHHH--HHHHTTCCTTCEEEEEEECSSSE
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHHH--HHHHHhCCCcCEEEEEEEECCEE
Confidence            47899999999999 999999           999999999999987543  44453  3489999999998865

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.26  E-value=1.1e-06  Score=79.13  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=51.1

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      +++|..|.++||| ++||++||+|++|||+++.++  .+...+++..+..+.|+|.|++..
T Consensus       387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~  445 (451)
T 3pv2_A          387 GVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLRGPGS  445 (451)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTSSCSCEEEEEEETTEE
T ss_pred             ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhcCCCeEEEEEEECCEE
Confidence            6899999999999 999999999999999999865  566677877788999999998753

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.16  E-value=2.6e-07  Score=79.64  Aligned_cols=59  Identities=24%  Similarity=0.363  Sum_probs=0.0

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| ++||++||+|++|||+++.++...  ...++. +..+.|+|.|+++.
T Consensus       253 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~--~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV--SDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHHH--HHHHhC-CCeEEEEEEECCEE
Confidence            357899999999999 899999999999999999876443  344543 78899999998765

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.08  E-value=9.4e-07  Score=79.40  Aligned_cols=59  Identities=19%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||..+.++.+  ....+.  ..|..+.|+|.|++..
T Consensus       286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~  347 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLGLLRDGKQ  347 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHH--HHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEE
Confidence            47899999999999 89999999999999999998754  344454  3588999999998754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.96  E-value=1.3e-05  Score=73.65  Aligned_cols=63  Identities=19%  Similarity=0.199  Sum_probs=48.3

Q ss_pred             CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCH----------HHHHHHHhCCCCeEEEEEEeCCCCC
Q psy12310         64 DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRH----------KDATNFFQSSDTSISLGIQRNPPGE  126 (201)
Q Consensus        64 ~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~----------~~av~~ik~~g~~v~L~v~R~~~~~  126 (201)
                      ..+++|..|.++|||.++|++||+|++|||..+.+...          ....-.-+..|..+.|+|.|+++..
T Consensus       276 ~~Gv~V~~V~~~spA~~al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~  348 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHK  348 (539)
T ss_dssp             SBCEEEEEECTTSGGGGTCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             cCceeeecccCCChHHhCccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            35899999999999943499999999999999965321          1112123456999999999998763

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.92  E-value=1.4e-06  Score=78.35  Aligned_cols=59  Identities=27%  Similarity=0.474  Sum_probs=0.0

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      .+++|..|.++||| ++||++||+|++|||.++.++  .+...+++.....+.|+|.|++..
T Consensus       383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~~v~l~v~R~g~~  442 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGDST  442 (448)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCCeEEEEEEECCEE
Confidence            47899999999999 999999999999999999865  445566766555889999998754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0051  Score=56.43  Aligned_cols=53  Identities=11%  Similarity=0.226  Sum_probs=43.7

Q ss_pred             CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEE
Q psy12310         65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGI  119 (201)
Q Consensus        65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v  119 (201)
                      .+++|..|.++++| .+++++||+|++|||+++.++.+.  .++++.+ +..+.+..
T Consensus       415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l--~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHL--AHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHH--HHHHHTCCSSEEEEEE
T ss_pred             eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHHH--HHHHHHcCCCeEEEEE
Confidence            47899999999999 899999999999999999987654  5567777 45555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	1e-17
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	9e-17
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-16
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	9e-16
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	1e-15
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	1e-15
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	5e-15
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	2e-14
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	5e-14
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-14
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-14
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	1e-13
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	1e-13
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-13
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-13
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-13
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	4e-13
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	6e-13
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	8e-13
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-12
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-12
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-12
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	3e-12
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	4e-12
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-12
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	7e-12
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	7e-12
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	9e-12
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-11
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	1e-11
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-11
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-11
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-11
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-11
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-11
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	5e-11
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	5e-11
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-11
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-11
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-10
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-10
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-10
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	7e-10
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	1e-09
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-09
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-09
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-09
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-09
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-09
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	8e-09
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-08
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-08
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	7e-08
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	2e-07
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-07
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-06
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	2e-06
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	1e-05
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	1e-04
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	0.004

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (177), Expect = 1e-17
 Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
            ++V +  P     WG R+ GG D + P+ I+++ PG+ AA ++L +GD++  I   ++ 
Sbjct: 2   AYSVTLTGPG---PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNP 123
            + H +A N  +S+  ++SL +Q++ 
Sbjct: 59  TMTHLEAQNKIKSASYNLSLTLQKSK 84

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.3 bits (172), Expect = 9e-17
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIG 92
            +TV +++ ++   +G+ ++GG D       ++ IVI+ V PG PA   L+  D +  + 
Sbjct: 8   QYTVTLQKDSKR-GFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVN 66

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
                D+ H  A    + S    ++ ++R   
Sbjct: 67  GTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRK 98

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (165), Expect = 6e-16
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           S  P + H+    V + + +    +G  +A G   +  + +  + P  P     LK  D 
Sbjct: 1   SPTPVELHK----VTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDR 55

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           + ++    +RD            S   + L I RNP
Sbjct: 56  LLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNP 91

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 9e-16
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA---AELKRGDIIRKI 91
           PH N   + + +P+ +  +G  + GG D   P+++++V PGTPA      L  GD +  I
Sbjct: 5   PHDNLVLIRM-KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 63

Query: 92  GDYDSRDLRHKDATNFFQSS----DTSISLGIQRNP 123
              D  +  H     F ++S       + L ++ N 
Sbjct: 64  NGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA 99

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--ELKRGDIIRKIGDYDSR 97
           +TV +KR       G+ I+G  +   PI+I+ +  G  A     +  GD I  I     +
Sbjct: 5   YTVELKRYGG--PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 62

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAAS 131
                +A +  Q +  +++L I++    + + AS
Sbjct: 63  GKPLSEAIHLLQMAGETVTLKIKK--QTDAQPAS 94

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 31  KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAA-AELK 83
           +PA+  +   T+ I R       G+ IAGG         D  I I++V    PAA A ++
Sbjct: 1   EPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVR 58

Query: 84  RGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
            GD + ++     +   H +A    + + T++ + + R
Sbjct: 59  VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 96

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.3 bits (159), Expect = 5e-15
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
           +  TV +  P     WG RI+GG D  +PI++TKV     A  A+L+ GDII  I    +
Sbjct: 6   SGLTVDVAGPA---PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSA 62

Query: 97  RDLRHKDATNFFQSSDTSISLGIQRNPP 124
            ++ H +A +  + S + + L + R+  
Sbjct: 63  ENMLHAEAQSKIRQSASPLRLQLDRSSG 90

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.1 bits (156), Expect = 2e-14
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPA--AAELKRGDIIRK 90
           P   TF V + +       G+ I+         P+VI+ +  G+ A     L+ GD +  
Sbjct: 7   PSSGTFHVKLPK-KHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLA 65

Query: 91  IGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
           I +        +DA    Q  +  + L I+++
Sbjct: 66  IDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 97

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (154), Expect = 5e-14
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSR 97
            V + R  +  S  L + GG D     +V++ VY G  A     + +GD I  I      
Sbjct: 18  DVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT 77

Query: 98  DLRHKDATNFFQSS----DTSISLGIQRNPPGE 126
           D    +A    Q +       I L +   PP E
Sbjct: 78  DYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 6e-14
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGD 86
           SG   Q     FTV +++  +   +G  I GG +    + + ++    PA     ++ GD
Sbjct: 3   SGSSGQDFD-YFTVDMEKGAK--GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGD 59

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
            I +I    +RD+ H  A    +S    + L ++R        +SG
Sbjct: 60  QIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR--GTGSGPSSG 103

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 6e-14
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--ELKRGDIIR 89
            +Q      +  +K+ N    +G  I GG + D  + +  V P  PAA   +++ GD+I 
Sbjct: 13  ASQLKGTFLSTTLKKSNM--GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70

Query: 90  KIGDYDSRDLRHKDATNFFQSSD--TSISLGIQRNPPGEKKAASGSRS 135
            I +       H D    FQS     S++L + R  P        + S
Sbjct: 71  YINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANS 118

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.8 bits (150), Expect = 1e-13
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDLDSP------IVITKVYPGTPAAA--ELKRGDIIRKI 91
             V + +  +  S+G+ I  G   DSP      I I  + P +PA     LK GD I  +
Sbjct: 5   HMVTLDKTGKK-SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 63

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
              D R+   +   +  + +D  I L IQ 
Sbjct: 64  NGKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 34  QPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRG 85
           +  +    V +++       G  I+GG           D  I +T+V P  PA+  L+ G
Sbjct: 7   ELAKQEIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPG 63

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           D I +   Y   ++ H  A +  ++   ++ L I R
Sbjct: 64  DKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 1e-13
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
           TV+I+RP+  +  G  +  G       +I  +  G  A    ++ G  I +I        
Sbjct: 3   TVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVAT 55

Query: 100 RHKDATNFFQSSDTSISLGI 119
            H+   +   ++   I +  
Sbjct: 56  PHEKIVHILSNAVGEIHMKT 75

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (149), Expect = 2e-13
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
           +  VV+  P     WG R++GG D + P+VIT++ PG+ AA A L  GD+I  I  + + 
Sbjct: 6   SGNVVLPGPA---PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTE 62

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLP 140
            + H DA +  +++   + L I R      +    S  V+  P
Sbjct: 63  SMTHADAQDRIKAASYQLCLKIDR-----AETRLWSPQVSSGP 100

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 4e-13
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
            V ++R   H   G  I GG +    I ++ V PG+ A    L+ GD I ++ D     +
Sbjct: 11  LVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARV 70

Query: 100 RHKDATNFFQSSDTSISLGIQRNPP 124
            H +A    + S   + L +     
Sbjct: 71  THAEAVKALKGS-KKLVLSVYSAGR 94

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (146), Expect = 4e-13
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRD 98
            V +++ +     G+ I GG +   PI+I+K++ G  A     L  GD I  +   D   
Sbjct: 7   RVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65

Query: 99  LRHKDATNFFQSSDTSISLGIQR 121
             H +A    + +   + L ++ 
Sbjct: 66  ATHDEAVQALKKTGKEVVLEVKY 88

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (147), Expect = 6e-13
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 31  KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIR 89
           K     +    V +++ +     G+ I  G      I ++KV  G+ A  A L+ GD + 
Sbjct: 12  KDRPYVEEPRHVKVQKGSE--PLGISIVSGEK--GGIYVSKVTVGSIAHQAGLEYGDQLL 67

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
           +    + R    + A         +I++  Q NP
Sbjct: 68  EFNGINLRSATEQQARLIIGQQCDTITILAQYNP 101

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (144), Expect = 8e-13
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
              + ++R N     G  IAGG D      D  I ITK+ PG  AA +  L+  D I  +
Sbjct: 2   YEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 59

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            + D R++ H  A    + + + + L + R  P
Sbjct: 60  NEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 92

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 1e-12
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAA--AELKRGDIIRKIGD 93
             TV +K+ N     GL I            I +  V  G  A     L  GD +  +  
Sbjct: 5   IITVTLKKQN---GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 61

Query: 94  YDSRDLRHKDATNFFQSSDTSISLGIQR 121
                L  + A      + + ++L + +
Sbjct: 62  RSLVGLSQERAAELMTRTSSVVTLEVAK 89

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (142), Expect = 2e-12
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
           + +V +  P     WG R+ GG D + P+ I+ +  G  A+ A ++ GD++  I    ++
Sbjct: 6   SGSVSLVGPA---PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQ 62

Query: 98  DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
            + H +A N  ++   S+++ +QR     K     S
Sbjct: 63  GMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 3e-12
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAE--LKRGDII 88
           + T+V+ R +   S G  I GG              I ++K+    PAA E  L+  D I
Sbjct: 9   SLTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
            ++   D     H  A   F+++   I + + R   G
Sbjct: 67  IEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 3e-12
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA--AAELKRGDIIRKIG 92
             V + +  +    G  IAGG        D+ I ITK+  G  A     L+ GD +  + 
Sbjct: 3   MEVNLLKGPK--GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 60

Query: 93  DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
           + + +D+RH++A    +++   + L + +  PG
Sbjct: 61  NTNLQDVRHEEAVASLKNTSDMVYLKVAK--PG 91

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 4e-12
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAA--ELKRGDIIR 89
             F V +++       G+ I G             I +  V  G  A     ++  D I 
Sbjct: 2   ELFPVELEKDED--GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 59

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           ++       +    A    +++  ++   I R  P
Sbjct: 60  EVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP 94

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 5e-12
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--L 82
           SG     H  T  VV+   +    +G+++ G       L SP +I+ +   +PA     L
Sbjct: 6   SGAGQVVHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           + GD +  I    + D   ++A    + S  +  + ++      +     S S
Sbjct: 65  QIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGS 117

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (139), Expect = 7e-12
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           SG           V +K+P      G  I GG      I I+KV P + A  A L+ GD 
Sbjct: 6   SGNNELTQFLPRIVTLKKPP-GAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQ 64

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           +  + D D +D+ H  A    +++   IS+ ++ 
Sbjct: 65  VLAVNDVDFQDIEHSKAVEILKTARE-ISMRVRF 97

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (138), Expect = 7e-12
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 16/104 (15%)

Query: 31  KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAA--A 80
           KP      TF V + + +   S G+ +    D            I +  + P   A    
Sbjct: 1   KPGD----TFEVELAKTDG--SLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDG 54

Query: 81  ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
            + +GD +  +         HK A    +++   + L +++   
Sbjct: 55  RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV 98

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 9e-12
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 16/99 (16%)

Query: 34  QPHQNTFTVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPGTPAAA--EL 82
           QP      V + R     S G+ I GG           +   I I  V   +PA     L
Sbjct: 1   QPR----RVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTL 55

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           K GD I ++   D RD  H+ A    + +   +   +Q 
Sbjct: 56  KPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 1e-11
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 36  HQNTFTVVIKRPNRHHSWGLRIAGGCD-------LDSPIVITKVYPGTPAA--AELKRGD 86
              T  VVI R   +  +G  I    +       +  P  I ++  G+PA   A+LK GD
Sbjct: 8   SLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGD 66

Query: 87  IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
            I  +      ++ H D     + +  S++L I           SG  S
Sbjct: 67  RILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSP--SGPSS 113

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAA--ELKRGDIIRKIGD 93
            FTV ++R       G+ +  G         + I  + PG+PAAA   L  GD I ++  
Sbjct: 9   VFTVELERGPS--GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG 66

Query: 94  YDSRDLRHKDATNFFQSSDTSISLGIQRNPP-GEKKAASGSRS 135
                L +  A +  +     +   + ++     KK  SG  S
Sbjct: 67  SSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSS 109

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
              +++      +G  + G         I  V PG+PA  A L  GD + ++   +    
Sbjct: 6   LCCLEKGPN--GYGFHLHGEKG-KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62

Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKK 128
            H+   +  +++  ++ L +   P  +++
Sbjct: 63  THQQVVSRIRAALNAVRLLVVD-PETDEQ 90

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSW-----GLRIAGGCDL-----DSPIVITKVYPGTPA 78
           SG    PH     + I R ++ H+      G+RI GG ++     +    I K+ PG  A
Sbjct: 6   SGHYIFPHA---RIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSA 62

Query: 79  AA--ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
               +L  G  + +          +++  +          + ++ +  
Sbjct: 63  EQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 2e-11
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 42  VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLR 100
           + I R      +G  I        P+ +  V  G PA  A L++ D + ++ +      +
Sbjct: 1   ITIPRGKD--GFGFTICCDS----PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 54

Query: 101 HKDATNFFQSSDTSISLGIQR 121
             +  +  +S  + I L + R
Sbjct: 55  CVELAHEIRSCPSEIILLVWR 75

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 2e-11
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIR 89
           P +P      +VI R +     G  I GG D    I I+ +  G PA  + EL++GD I 
Sbjct: 7   PREPR----RIVIHRGST--GLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQIL 59

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
            +   D R+  H+ A    +++  ++++  Q  P
Sbjct: 60  SVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 93

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 27  RKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRG 85
           R+S        +   V +       S GL I GG +    I IT V PG+ A  + LK G
Sbjct: 9   RRSTLHLLQGGDEKKVNLVL-GDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVG 67

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           D I ++      ++ H +A    +SS   + L ++ 
Sbjct: 68  DQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKD 102

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.4 bits (133), Expect = 5e-11
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 41  TVVIKRPNRHHSWGLRIAGG------------CDLDSPIVITKVYPGTPAA-AELKRGDI 87
           TV++++ +    +G  + G                 +   +  V  G  A  A L+ GD 
Sbjct: 8   TVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 66

Query: 88  IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
           + ++   +   + H+   N  +    ++ + +     
Sbjct: 67  LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 103

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.0 bits (132), Expect = 5e-11
 Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAA--AELKRGDIIR 89
            V + +       G  I  G  +            I I+++ PG  A     L   D + 
Sbjct: 5   RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 64

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
           ++   +         T+   ++ +++ + ++ 
Sbjct: 65  EVNGIEVAGKTLDQVTDMMVANSSNLIITVKP 96

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 7e-11
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDS 96
              V ++R      +G RI GG +   PI+I  V     A     L  GD +  +     
Sbjct: 10  ELDVHLRRMES--GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67

Query: 97  RDLRHKDATNFFQSS--DTSISLGIQRNPP 124
               H+   +    +  +  ++L ++R   
Sbjct: 68  AGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 8e-11
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPAAAE--LKRG 85
           SG           V I +     + G+ +        S I I ++ P +       L  G
Sbjct: 6   SGDTVANASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
           D I  I           +AT    S    + L I   P  ++     S
Sbjct: 65  DHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 40  FTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPA--AAELKRGDIIRKI 91
               + R  R    G  IAGG         D+ I ++++  G  A  A  L+ GD +  I
Sbjct: 9   HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

Query: 92  GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
              D  + RH  A +   ++  +I+L ++R   
Sbjct: 67  NGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-10
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 35  PHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--LKRGDII 88
            H  T  VV+   +    +GL++ GG      L SP ++  + P +PA     L+ GD +
Sbjct: 5   VHTETTEVVLCG-DPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRV 63

Query: 89  RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ 120
             I    + D   ++A    + +  +  + ++
Sbjct: 64  LSINGIATEDGTMEEANQLLRDAALAHKVVLE 95

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
            V I         G  I+ G      I I+ V PG+ +A   L+ GD I ++   D  +L
Sbjct: 11  KVFISLVG-SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNL 69

Query: 100 RHKDATNFFQSSDTSISLGIQR 121
            HK+A N  +SS  S+++ I  
Sbjct: 70  DHKEAVNVLKSS-RSLTISIVA 90

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (124), Expect = 7e-10
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 11/98 (11%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPA--AAELKRGDI 87
           P         + + +       GL+I GG +      + I +V PG        LK GD 
Sbjct: 2   PLDRDPAFRVITVTKET---GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQ 58

Query: 88  IRKIGDYDSRDLRHKDATNFFQSS----DTSISLGIQR 121
           +  I       +  ++A +    +    ++   +   R
Sbjct: 59  LVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 37  QNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
                 ++ +       G  +AGG DL +  I + +V+P   A+ E  +++G+ +  I  
Sbjct: 7   DGIHVTILHKEE-GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSING 65

Query: 94  YDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
              +   H DA    + +       I       +
Sbjct: 66  KSLKGTTHHDALAILRQAREPRQAVIVTRKLTPE 99

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAA--AELKRGDIIRKIGDYD 95
           ++ ++R       G  I GG      D PI +  V+    A+    LKRGD I  +    
Sbjct: 5   SITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 62

Query: 96  SRDLRHKDATNFFQSSDTSISLGI 119
              + H++A    + +  +++L +
Sbjct: 63  LEGVTHEEAVAILKRTKGTVTLMV 86

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPGTPAAAE--LKRGDIIR 89
            + I++       G+ I GG            D  I I+KV P   A  +  L+ G  + 
Sbjct: 12  ELCIQK-APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70

Query: 90  KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
           ++       L H +A    +S   ++++ +      E   +SG
Sbjct: 71  EVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD--GFESGPSSG 111

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
              V + R N     GL +    D   D  I I+++ P + AA    ++ GD I +I   
Sbjct: 20  LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI 79

Query: 95  DSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
           + ++     A       + + SL I R      +      S
Sbjct: 80  EVQNREEAVAL-LTSEENKNFSLLIARPELQLDEGWMDDDS 119

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
            V++ + ++    GLR+      D+ I +  V   +PA+   L+ GD + +I   +    
Sbjct: 5   EVILCK-DQDGKIGLRLKSI---DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 60

Query: 100 RHKDATNFF-QSSDTSISLGIQRNP 123
               A     Q+    I++ I+  P
Sbjct: 61  SSDKAHKVLKQAFGEKITMTIRDRP 85

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 14/106 (13%)

Query: 32  PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPA--AAELKRG 85
                Q T  + +         G+ + G        D  I I  +  G  A     L+  
Sbjct: 19  LESSEQLTLEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMN 77

Query: 86  DIIRKIGDYDSRDLRHKDATNFFQSS-------DTSISLGIQRNPP 124
           D +  +         + +A    + S          I L I R   
Sbjct: 78  DQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 8e-09
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 38  NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYD 95
           N  +V + +  +    G  +        P++I+ +  G  A     ++ GDII  + D  
Sbjct: 1   NVISVRLFK-RKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 96  SRDLRHKDATNFFQSS-DTSISLGIQRNPPGEKKAASGSRSVTPLP 140
             DL +  A    +     +  + I R P G       + +    P
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP 104

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 39  TFTVVIKRPNRHHSWGLRIAGGCDLDSP-IVITKVYPGTPA--AAELKRGDIIRKIGDYD 95
              V +K+     + G+ I GG +   P   I  +  G  A    +LK G +I ++    
Sbjct: 7   GTLVRVKKSA--ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64

Query: 96  SRDLRHKDATNFFQSSDTSISLG 118
            R   H++A      +  +    
Sbjct: 65  LRGKEHREAARIIAEAFKTKDRD 87

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRD 98
            V  ++ N     G+ +       +  ++ ++  G     +  L  GD IR+I      +
Sbjct: 4   LVQFQK-NTDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60

Query: 99  LRHKDATNFFQSSDTSISLGIQRN 122
              +      +    SI+  I  +
Sbjct: 61  QTVEQLQKMLREMRGSITFKIVPS 84

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 7e-08
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 41  TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRD 98
            V I++  R    G  +         ++I+++  G  A     L  GD + +I   + R 
Sbjct: 21  IVRIEK-ARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 76

Query: 99  LRHKDATNFFQSSDTSISLGI 119
               +  +       +++  +
Sbjct: 77  KDVNEVFDLLSDMHGTLTFVL 97

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 54  GLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS- 111
           GL I         +V+    PG PA  A  + GD+I  +     + +   D ++  Q   
Sbjct: 8   GLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEA 67

Query: 112 DTSISLGIQRNPPGEKK 128
           D+ + + +    PG   
Sbjct: 68  DSQVEVVLHA--PGAPS 82

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 42  VVIKRPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSR 97
           V I++  +    G+ I       +   ++I  +  G PA     L  GD I  I      
Sbjct: 2   VFIEK-QKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLV 60

Query: 98  DLRHKDATNFFQS--SDTSISLGI 119
            L      +  +   + + + L I
Sbjct: 61  GLPLSTCQSIIKGLKNQSRVKLNI 84

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 25  PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--EL 82
              K+              +   N     GL +         + I+ +     AA+   L
Sbjct: 14  QLSKAKASVSSLNKVIQTKLTVGNL--GLGLVVIQN---GPYLQISHLINKGAAASDGIL 68

Query: 83  KRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRN 122
           + GD++  +G  +      ++     Q+    T + +   R 
Sbjct: 69  QPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 29  SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
           SG  ++       +           G  + G    ++P+ +  + P   A+ A  K GD 
Sbjct: 6   SGSASKRWSPPRGIHFTVEEG--DLGFTLRG----NTPVQVHFLDPHCSASLAGAKEGDY 59

Query: 88  IRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPGEKKAASGSRS 135
           I  I   D + L   +     +S     + + +      +  ++  ++S
Sbjct: 60  IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS--LLDSTSSMHNKS 106

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 62  DLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ 120
             D  +V+  V  GTPAA   LK+GD+I        +++   +      S  + ++L IQ
Sbjct: 22  GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIA--ELRKVLDSKPSVLALNIQ 79

Query: 121 RN 122
           R 
Sbjct: 80  RG 81

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 50  HHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFF 108
           H S G+++    D      I +V  G  AA A + +G ++ K+ D          A    
Sbjct: 2   HASLGVQVTNDKD-TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRS 60

Query: 109 QSSDTSISLGIQRN 122
           ++   +++L  Q  
Sbjct: 61  KAPGATVALTFQDP 74

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 67  IVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
           + I  V PG+PA+  L  G +I  I    + +L    A     S    I++   + 
Sbjct: 5   VQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQG 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.83
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.79
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.78
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.77
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.77
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.76
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.76
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.76
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.75
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.75
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.75
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.75
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.74
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.74
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.73
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.73
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.73
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.72
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.72
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.72
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.71
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.71
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.71
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.71
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.7
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.7
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.7
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.7
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.7
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.69
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.69
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.69
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.68
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.68
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.67
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.65
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.65
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.64
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.64
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.64
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.63
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.63
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.62
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.58
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.57
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.57
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.55
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.55
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.53
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.52
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.44
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.32
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.05
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.94
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.92
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.92
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.84
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.8
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.75

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.3e-21  Score=132.93  Aligned_cols=82  Identities=28%  Similarity=0.647  Sum_probs=76.7

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      .++|+|.+   ..+|||+|.||.+...+++|..|.++||| +++|++||+|++|||.++.+++|.+++.+|+.++..++|
T Consensus         2 p~~V~l~~---~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L   78 (85)
T d1rgwa_           2 AYSVTLTG---PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL   78 (85)
T ss_dssp             EEEEEECC---SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEE
T ss_pred             CEEEEecC---CCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            47899975   37899999999998889999999999999 899999999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy12310        118 GIQRNP  123 (201)
Q Consensus       118 ~v~R~~  123 (201)
                      +|.|.+
T Consensus        79 ~V~R~~   84 (85)
T d1rgwa_          79 TLQKSK   84 (85)
T ss_dssp             EEESCC
T ss_pred             EEEECC
Confidence            999876

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=9.6e-20  Score=129.74  Aligned_cols=84  Identities=33%  Similarity=0.587  Sum_probs=76.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|++..   ..+|||+|.||.+...+++|..|.+++|| +++|++||+|++|||+++.+++|.+++.+|+.++..|.
T Consensus         6 ~~~tv~~~g---~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~   82 (94)
T d1vb7a_           6 SGLTVDVAG---PAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR   82 (94)
T ss_dssp             CCEEEEECS---SSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEE
T ss_pred             ceEEEEEEC---CCcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            456777753   47899999999998889999999999999 89999999999999999999999999999999999999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |+|.|...
T Consensus        83 L~V~R~~~   90 (94)
T d1vb7a_          83 LQLDRSSG   90 (94)
T ss_dssp             EEEECCCC
T ss_pred             EEEEECCC
Confidence            99999654

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.7e-19  Score=125.72  Aligned_cols=84  Identities=24%  Similarity=0.421  Sum_probs=76.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|. ...+|||+|.||.+...+++|..|.|+||| .+| |++||+|++|||.++.+++|.+++.+|+.++..+
T Consensus         4 q~r~V~l~k~-~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v   82 (90)
T d1qava_           4 QRRRVTVRKA-DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SCEEEEEECC-TTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             eEEEEEEEeC-CCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            4568999987 456899999999988889999999999999 666 9999999999999999999999999999999999


Q ss_pred             EEEEEeC
Q psy12310        116 SLGIQRN  122 (201)
Q Consensus       116 ~L~v~R~  122 (201)
                      +|+|+|-
T Consensus        83 ~l~v~~~   89 (90)
T d1qava_          83 VLEVKYM   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999874

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-18  Score=127.86  Aligned_cols=97  Identities=27%  Similarity=0.325  Sum_probs=81.9

Q ss_pred             ccCCCCCCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHH
Q psy12310         26 TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        26 ~~~~~~~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      .|++.--.....+.++|+|.|. .+.+|||+|.||.+...|++|..|.+++|| .+||++||+|++|||+++.+++|.++
T Consensus         8 ~~~~~~~~~~~~~~~~v~l~~~-~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~ev   86 (128)
T d1uf1a_           8 DRRSTLHLLQGGDEKKVNLVLG-DGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEA   86 (128)
T ss_dssp             TTSCCSCCCCCSSEEEEEEECC-SSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHH
T ss_pred             CCcccceecCCCCeEEEEEEEC-CCCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHH
Confidence            3344333334456788999887 457899999999998899999999999999 88999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeCCC
Q psy12310        105 TNFFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~~~  124 (201)
                      +++|+.+ ..+.|+|.+...
T Consensus        87 v~~lr~~-~~v~l~v~~~~~  105 (128)
T d1uf1a_          87 VRLLKSS-RHLILTVKDVGR  105 (128)
T ss_dssp             HHHHTTC-SEEEEEEECCSC
T ss_pred             HHHHhcC-CcEEEEEEECCc
Confidence            9999876 578899987654

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.6e-18  Score=122.70  Aligned_cols=89  Identities=26%  Similarity=0.441  Sum_probs=79.3

Q ss_pred             CCCCCCceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHH
Q psy12310         32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        32 ~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      |+....+.++|+|.|..  .+|||+|.||.+.      ..+++|..|.+|||| .+||++||+|++|||.++.+++|.++
T Consensus         2 P~~~~~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~   79 (97)
T d1x5qa1           2 PARIEEEELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEA   79 (97)
T ss_dssp             CCCCCCEEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CCCcCCeEEEEEEEeCC--CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHH
Confidence            55556678899999964  6799999998743      457999999999999 89999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeC
Q psy12310        105 TNFFQSSDTSISLGIQRN  122 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~  122 (201)
                      +.+++.++..+.|+|.|+
T Consensus        80 ~~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          80 VEALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHHHHSCCSEEEEEEEEC
T ss_pred             HHHHhCCCCEEEEEEEEC
Confidence            999999999999999985

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.1e-18  Score=121.10  Aligned_cols=84  Identities=19%  Similarity=0.325  Sum_probs=77.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +...|+|.|.....+|||+|.+|.+ ..+++|..|.++||| .+||++||+|++|||.++.+++|.+++.+|+.++..+.
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~-~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~   84 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLD   84 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEE
T ss_pred             ceEEEEEEECCCCCceeEEEeccCC-CCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
Confidence            5678999997556789999999886 568999999999999 89999999999999999999999999999999999999


Q ss_pred             EEEEeC
Q psy12310        117 LGIQRN  122 (201)
Q Consensus       117 L~v~R~  122 (201)
                      |+|.|.
T Consensus        85 L~v~R~   90 (91)
T d1m5za_          85 LVISRN   90 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999986

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.3e-18  Score=123.30  Aligned_cols=83  Identities=29%  Similarity=0.465  Sum_probs=74.6

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      ..+|+|.|.  ..+|||+|.||.+.     ..+++|.+|.+|||| .+| |++||+|++|||.++.+++|.+++.+|+.+
T Consensus         2 ~~~V~l~k~--~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           2 YEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             EEEEEEECC--SSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CEEEEEEeC--CCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            568999986  36799999998763     458999999999999 777 999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy12310        112 DTSISLGIQRNP  123 (201)
Q Consensus       112 g~~v~L~v~R~~  123 (201)
                      +..|.|+|.|..
T Consensus        80 ~~~v~L~v~R~~   91 (93)
T d1rgra_          80 GSIVRLYVMRRK   91 (93)
T ss_dssp             TTEEEEEEECSC
T ss_pred             CCEEEEEEEeCC
Confidence            999999999865

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.5e-18  Score=124.42  Aligned_cols=84  Identities=29%  Similarity=0.446  Sum_probs=75.8

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      ..++|+|.|. ...+|||+|.||.+...+++|..|.++||| .+||++||+|++|||+++.+++|.+++.+|+.+ ..+.
T Consensus        15 ~pr~V~l~r~-~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~-~~v~   92 (104)
T d1wi2a_          15 LPRIVTLKKP-PGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA-REIS   92 (104)
T ss_dssp             CCEEEEECCC-TTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHS-SSEE
T ss_pred             cCEEEEEEeC-CCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcC-CeEE
Confidence            4578999997 457899999999988889999999999999 889999999999999999999999999999877 4689


Q ss_pred             EEEEeCC
Q psy12310        117 LGIQRNP  123 (201)
Q Consensus       117 L~v~R~~  123 (201)
                      |+|+|..
T Consensus        93 l~V~~~~   99 (104)
T d1wi2a_          93 MRVRFFS   99 (104)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9997754

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=5.3e-18  Score=120.74  Aligned_cols=86  Identities=23%  Similarity=0.351  Sum_probs=78.1

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ..++|+|.|++  .+|||+|.+|.+...+++|.+|.++||| .+| |++||+|++|||+++.+++|.+++.+|+.++..+
T Consensus         3 ~i~tV~l~k~~--~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v   80 (95)
T d1n7ea_           3 IIYTVELKRYG--GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV   80 (95)
T ss_dssp             CEEEEEEECTT--SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEEEEEECC--CcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            46789999964  6799999999887888999999999999 666 9999999999999999999999999999999999


Q ss_pred             EEEEEeCCCC
Q psy12310        116 SLGIQRNPPG  125 (201)
Q Consensus       116 ~L~v~R~~~~  125 (201)
                      .|+|.|....
T Consensus        81 ~l~v~r~~~~   90 (95)
T d1n7ea_          81 TLKIKKQTDA   90 (95)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCCC
Confidence            9999987643

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=122.87  Aligned_cols=82  Identities=28%  Similarity=0.404  Sum_probs=71.1

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      .++|+|.|. .+.+|||+|.||.+.         ..++||.+|.++||| .+| |++||+|++|||.++.+++|.+|+.+
T Consensus         2 pr~V~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           2 PRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             CEEEEECCC-C-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEeC-CCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            468999997 567899999998643         347899999999999 776 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEe
Q psy12310        108 FQSSDTSISLGIQR  121 (201)
Q Consensus       108 ik~~g~~v~L~v~R  121 (201)
                      |+.++..|+|+|+|
T Consensus        81 lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          81 IRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHTCCSSEEEEEEC
T ss_pred             HHcCCCeEEEEEEE
Confidence            99999999999987

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.2e-18  Score=120.52  Aligned_cols=83  Identities=25%  Similarity=0.422  Sum_probs=74.4

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .++|+|.|..  .+|||+|.||.+.     ..++||.+|.++||| ++| |++||+|++|||.++.+++|.+++++|+.+
T Consensus         2 v~~V~L~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           2 IMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             EEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEECC--CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            3679999853  6799999998753     357999999999999 766 999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy12310        112 DTSISLGIQRNP  123 (201)
Q Consensus       112 g~~v~L~v~R~~  123 (201)
                      +..++|+|.|.+
T Consensus        80 ~~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 SDMVYLKVAKPG   91 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCEEEEEEECCC
Confidence            999999999876

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.4e-18  Score=125.55  Aligned_cols=83  Identities=25%  Similarity=0.514  Sum_probs=76.3

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG  118 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~  118 (201)
                      ..|++..   ..+|||+|.||.+...+++|..|.++++| +++|++||+|++|||+++.+++|.+|+++|+.++..|.|+
T Consensus         7 ~~v~~~g---~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~   83 (103)
T d1wf7a_           7 GSVSLVG---PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT   83 (103)
T ss_dssp             EEEEEES---SSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEE
T ss_pred             eEEEEEC---CCCccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4678874   47899999999998889999999999999 8999999999999999999999999999999999999999


Q ss_pred             EEeCCCC
Q psy12310        119 IQRNPPG  125 (201)
Q Consensus       119 v~R~~~~  125 (201)
                      |.|....
T Consensus        84 v~R~~~~   90 (103)
T d1wf7a_          84 LQRASAA   90 (103)
T ss_dssp             ECCCSCC
T ss_pred             EEECCCC
Confidence            9987654

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=7.4e-19  Score=127.15  Aligned_cols=84  Identities=33%  Similarity=0.634  Sum_probs=75.7

Q ss_pred             EEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Q psy12310         42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ  120 (201)
Q Consensus        42 V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~  120 (201)
                      |.+.   +..+|||+|.||.+...+++|..|.+++|| +++|++||+|++|||+++.+++|.+++.+|+.++..|.|+|.
T Consensus         9 v~~~---g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~   85 (103)
T d1v5la_           9 VVLP---GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKID   85 (103)
T ss_dssp             CEEE---SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEEC
T ss_pred             EEEE---CCCCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            5565   358899999999998889999999999999 899999999999999999999999999999999999999999


Q ss_pred             eCCCCCcc
Q psy12310        121 RNPPGEKK  128 (201)
Q Consensus       121 R~~~~~~~  128 (201)
                      |.+...+.
T Consensus        86 R~~~~~~~   93 (103)
T d1v5la_          86 RAETRLWS   93 (103)
T ss_dssp             CCTTTTSC
T ss_pred             ECCcccCC
Confidence            97654333

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.6e-18  Score=119.53  Aligned_cols=84  Identities=19%  Similarity=0.315  Sum_probs=74.8

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .+.++|++.+.   .+|||+|.+|.+.   ..++||.+|.+|||| .+| |++||+|++|||.++.+++|.+|+.+|+.+
T Consensus         3 pei~~v~l~~~---~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           3 PEIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT   79 (92)
T ss_dssp             CEEEEEEEECS---SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CeEEEEEEeCC---CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC
Confidence            36778999875   4699999998753   347999999999999 766 999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy12310        112 DTSISLGIQRNP  123 (201)
Q Consensus       112 g~~v~L~v~R~~  123 (201)
                      +..|+|+|.|.+
T Consensus        80 ~~~v~L~v~R~g   91 (92)
T d1t2ma1          80 SSVVTLEVAKQG   91 (92)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            999999999975

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=5.1e-18  Score=120.39  Aligned_cols=83  Identities=28%  Similarity=0.413  Sum_probs=73.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCC------CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLD------SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~------~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      ...+|+|.|. +..+|||+|.||.+..      .++||..|.|+||| .+| |++||+|++|||.++.+++|.+++++|+
T Consensus         3 ~i~~V~L~k~-~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~   81 (94)
T d1ihja_           3 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   81 (94)
T ss_dssp             EEEEEEEECT-TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEEEeC-CCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHH
Confidence            3567899987 4678999999997542      25899999999999 665 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEe
Q psy12310        110 SSDTSISLGIQR  121 (201)
Q Consensus       110 ~~g~~v~L~v~R  121 (201)
                      .++..|+|+|+|
T Consensus        82 ~~~~~v~L~V~R   93 (94)
T d1ihja_          82 EADFKIELEIQT   93 (94)
T ss_dssp             HSCSEEEEEEEE
T ss_pred             cCCCEEEEEEEe
Confidence            999999999987

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=121.66  Aligned_cols=85  Identities=25%  Similarity=0.394  Sum_probs=75.7

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC--------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHH
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATN  106 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~--------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~  106 (201)
                      .+.++|+|.|..  .+|||+|.||.+.        ..++||.+|.++||| ++| |++||+|++|||+++.+++|.+|++
T Consensus         7 g~~~~V~l~k~~--~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~   84 (107)
T d1uhpa_           7 GKSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SEEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEEECC--CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHH
Confidence            457899999964  6799999999642        458999999999999 665 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEeCC
Q psy12310        107 FFQSSDTSISLGIQRNP  123 (201)
Q Consensus       107 ~ik~~g~~v~L~v~R~~  123 (201)
                      +|+.++..+.|+|.|..
T Consensus        85 ~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          85 AFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHHCCSSEEEEEEECC
T ss_pred             HHHhCCCcEEEEEEECC
Confidence            99999999999999864

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=117.97  Aligned_cols=83  Identities=17%  Similarity=0.267  Sum_probs=74.9

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL  117 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L  117 (201)
                      .+.|+|.|..  .+|||+|.++.. ..+++|..|.+|||| .+||++||+|++|||.++.+++|.+++.+|+.++..++|
T Consensus         4 Pr~v~l~k~~--~g~Gf~i~~~~~-~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L   80 (91)
T d1g9oa_           4 PRLCCLEKGP--NGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL   80 (91)
T ss_dssp             CEEEEEECBT--TBCCEEEEECTT-CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CEEEEEEECC--CeeeEEEEecCC-CCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4679999963  679999999866 568999999999999 899999999999999999999999999999999999999


Q ss_pred             EEEeCCC
Q psy12310        118 GIQRNPP  124 (201)
Q Consensus       118 ~v~R~~~  124 (201)
                      +|.+...
T Consensus        81 ~v~~~~~   87 (91)
T d1g9oa_          81 LVVDPET   87 (91)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9987543

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.3e-18  Score=123.70  Aligned_cols=86  Identities=24%  Similarity=0.452  Sum_probs=77.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      +.++|.|.|. ...+|||+|.||.+.      ..+++|.+|.+||||+++|++||+|++|||+++.+++|.+++.+|+.+
T Consensus         7 e~~tV~l~k~-~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~   85 (104)
T d2csja1           7 EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   85 (104)
T ss_dssp             EEEEEEEECC-SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             ccEEEEEEeC-CCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4678999997 467899999998753      357999999999999878999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                      +..+.|+|.|...
T Consensus        86 ~~~v~l~V~R~~~   98 (104)
T d2csja1          86 GKIAAIVVKRPRK   98 (104)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999998654

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.2e-17  Score=120.34  Aligned_cols=84  Identities=15%  Similarity=0.292  Sum_probs=75.2

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC------------CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL------------DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDA  104 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------------~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~a  104 (201)
                      +.++|.|.|. .+.+|||.+.||...            ..+++|..|.+|||| .+||++||+|++|||+++.+++|.++
T Consensus         5 ~~~tV~l~r~-~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~ev   83 (104)
T d1q3oa_           5 KEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV   83 (104)
T ss_dssp             EEEEEEEECC-TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEEC-CCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHH
Confidence            5678999987 467899999998642            235799999999999 89999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEeC
Q psy12310        105 TNFFQSSDTSISLGIQRN  122 (201)
Q Consensus       105 v~~ik~~g~~v~L~v~R~  122 (201)
                      +.+|+.++..|.|+|.+.
T Consensus        84 v~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          84 VNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEec
Confidence            999999999999999874

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.5e-17  Score=119.01  Aligned_cols=84  Identities=18%  Similarity=0.337  Sum_probs=74.0

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecC--------CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~--------~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      +.++|+|.|.+  .+|||+|.++.+        ...++||.+|.++||| .+| |++||+|++|||.++.+++|.+|+.+
T Consensus         4 ~~~~V~L~k~~--~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~   81 (99)
T d1ozia_           4 DTFEVELAKTD--GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   81 (99)
T ss_dssp             CEEEEEEECCS--SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             CEEEEEEEECC--CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHH
Confidence            57899999963  579999986543        2357999999999999 776 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCC
Q psy12310        108 FQSSDTSISLGIQRNP  123 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~  123 (201)
                      |+.++..|+|+|.|+.
T Consensus        82 lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          82 LRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHSCSEEEEEEECCC
T ss_pred             HHCCCCeEEEEEEeCC
Confidence            9999999999999865

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.8e-18  Score=121.26  Aligned_cols=87  Identities=21%  Similarity=0.365  Sum_probs=76.7

Q ss_pred             CCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC-
Q psy12310         35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-  111 (201)
Q Consensus        35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~-  111 (201)
                      ...+.++|.|.|..  .+|||+|.||.+...+++|..|.+++|| .+| |++||+|++|||+++.+++|.+|+.+|+.+ 
T Consensus         6 s~~~~~~V~l~k~~--~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~   83 (103)
T d1uepa_           6 SGYKELDVHLRRME--SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             SSEEEECCEEESSS--SSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEeCC--ceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34467789999864  5799999999988889999999999999 766 999999999999999999999999999876 


Q ss_pred             -CCeEEEEEEeCC
Q psy12310        112 -DTSISLGIQRNP  123 (201)
Q Consensus       112 -g~~v~L~v~R~~  123 (201)
                       +..|.|+|.|..
T Consensus        84 ~~~~v~l~v~r~~   96 (103)
T d1uepa_          84 RNGQVNLTVRRKV   96 (103)
T ss_dssp             HHTEEEEEEEEEC
T ss_pred             CCCEEEEEEEeCC
Confidence             468999998854

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=1.2e-17  Score=119.72  Aligned_cols=89  Identities=22%  Similarity=0.390  Sum_probs=78.3

Q ss_pred             CCCCceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        34 ~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      .|....++|+|.|. .+.+|||++.+|.+.  ..+++|..|.++||| .+| |++||+|++|||.++.+++|.+++.+|+
T Consensus         6 ~p~~~~~~V~l~k~-~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~   84 (99)
T d1p1da2           6 IPSSGTFHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ   84 (99)
T ss_dssp             BCCSSCEEEEECCC-SSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHH
T ss_pred             cCCCCcEEEEEEEC-CCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHH
Confidence            45556789999986 467899999988653  457999999999999 766 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEeCC
Q psy12310        110 SSDTSISLGIQRNP  123 (201)
Q Consensus       110 ~~g~~v~L~v~R~~  123 (201)
                      .++..++|+|.|+.
T Consensus        85 ~~~~~v~L~V~r~~   98 (99)
T d1p1da2          85 QCEDLVKLKIRKDE   98 (99)
T ss_dssp             HCTTCEEEEEECCC
T ss_pred             cCCCeEEEEEEeCC
Confidence            99899999999864

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4e-18  Score=124.65  Aligned_cols=85  Identities=21%  Similarity=0.296  Sum_probs=75.1

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHH
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNF  107 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~  107 (201)
                      .++|+|.|. .+.+|||+|.||.+.         ..++||.+|.++||| ++| |++||+|++|||+++.+++|.+|+.+
T Consensus        10 ~~~V~l~k~-~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   88 (111)
T d1ujua_          10 LRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSCEEEECC-TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             eEEEEEEeC-CCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHH
Confidence            456889886 457899999998752         458999999999999 776 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEeCCC
Q psy12310        108 FQSSDTSISLGIQRNPP  124 (201)
Q Consensus       108 ik~~g~~v~L~v~R~~~  124 (201)
                      |+.++..|+|+|.|...
T Consensus        89 lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          89 LRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HSSCSSEEEECCCCCCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            99999999999988764

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.4e-18  Score=120.79  Aligned_cols=87  Identities=24%  Similarity=0.396  Sum_probs=76.2

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      .+.+.|+|.|.....+|||+|.+|.+...+++|..|.+++|| .+||++||+|++|||+++.+++|.+++.+|+.++ .+
T Consensus         7 ~~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~-~~   85 (101)
T d1ueza_           7 GEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK-KL   85 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSS-SC
T ss_pred             CCEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCC-CE
Confidence            356778898865567899999999998889999999999999 8899999999999999999999999999999875 46


Q ss_pred             EEEEEeCCC
Q psy12310        116 SLGIQRNPP  124 (201)
Q Consensus       116 ~L~v~R~~~  124 (201)
                      .|+|.|.+.
T Consensus        86 ~l~V~~~~~   94 (101)
T d1ueza_          86 VLSVYSAGR   94 (101)
T ss_dssp             CEEECCCCC
T ss_pred             EEEEEECCC
Confidence            677877653

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.1e-17  Score=118.71  Aligned_cols=85  Identities=26%  Similarity=0.455  Sum_probs=75.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      ..+.|+|.|+.  .+|||+|.||.+.      ..++||..|.++||| .+| |++||+|++|||+++.+++|.+++.+|+
T Consensus         7 ~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~   84 (105)
T d1whaa_           7 GRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT   84 (105)
T ss_dssp             EEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHT
T ss_pred             CCEEEEEEECC--CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHH
Confidence            46679999864  5699999998742      457999999999999 766 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEeCCC
Q psy12310        110 SSDTSISLGIQRNPP  124 (201)
Q Consensus       110 ~~g~~v~L~v~R~~~  124 (201)
                      .++..|.|+|.|...
T Consensus        85 ~~~~~v~l~v~R~~~   99 (105)
T d1whaa_          85 AASPTIALLLEREAG   99 (105)
T ss_dssp             SCCSCEEEEEEECCC
T ss_pred             cCCCeEEEEEEECCC
Confidence            998999999999764

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=112.73  Aligned_cols=75  Identities=23%  Similarity=0.349  Sum_probs=68.4

Q ss_pred             EEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Q psy12310         42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ  120 (201)
Q Consensus        42 V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~  120 (201)
                      |+|.|..  .+|||++.++    .+++|.+|.++||| .+||++||+|++|||.++.+++|.+++.+++.++..++|+|.
T Consensus         1 v~l~r~~--~g~Gf~l~~~----~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~   74 (77)
T d2f5ya1           1 ITIPRGK--DGFGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW   74 (77)
T ss_dssp             EEEECBT--TBTSEEEECS----SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred             CEEecCC--CcccEEEECC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEE
Confidence            5788863  6799999964    46999999999999 899999999999999999999999999999999999999998


Q ss_pred             eC
Q psy12310        121 RN  122 (201)
Q Consensus       121 R~  122 (201)
                      |-
T Consensus        75 R~   76 (77)
T d2f5ya1          75 RM   76 (77)
T ss_dssp             EC
T ss_pred             EE
Confidence            83

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=118.30  Aligned_cols=84  Identities=17%  Similarity=0.244  Sum_probs=73.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecC------CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~------~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      +.++|+|.|+.  .+|||+|.|+..      ...+++|.+|.++||| .+| |++||+|++|||.++.+++|.+++.+|+
T Consensus         2 e~~~V~L~k~~--~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1           2 ELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            56789999964  679999998642      1346899999999999 766 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEeCC
Q psy12310        110 SSDTSISLGIQRNP  123 (201)
Q Consensus       110 ~~g~~v~L~v~R~~  123 (201)
                      .++..++|+|.|..
T Consensus        80 ~~~~~v~L~V~R~k   93 (94)
T d1wf8a1          80 NTKGNVRFVIGREK   93 (94)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999999864

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.2e-17  Score=118.19  Aligned_cols=83  Identities=28%  Similarity=0.478  Sum_probs=75.2

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      +.++|+|.|+.  .+|||+|.+|.+ ..++||..|.++||| .+| |++||+|++|||.++.+++|.+++.+|+.++..+
T Consensus         9 ~~r~V~l~k~~--~glG~~i~~~~~-~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v   85 (102)
T d1tp5a1           9 EPRRIVIHRGS--TGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV   85 (102)
T ss_dssp             SCEEEEEECTT--SCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred             CCEEEEEEeCC--CcccEEEEeccC-CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeE
Confidence            45789999963  679999999877 578999999999999 776 9999999999999999999999999999999999


Q ss_pred             EEEEEeCC
Q psy12310        116 SLGIQRNP  123 (201)
Q Consensus       116 ~L~v~R~~  123 (201)
                      +|++.|..
T Consensus        86 ~L~v~~~~   93 (102)
T d1tp5a1          86 TIIAQYKP   93 (102)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEECC
Confidence            99998854

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.3e-17  Score=117.22  Aligned_cols=84  Identities=26%  Similarity=0.450  Sum_probs=72.5

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC--------CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~--------~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      .+++.|++.++   .+|||+|.||.+.        ..++||+.|.++|||...|++||+|++|||.++.+++|.+|+.+|
T Consensus        10 ~~~v~v~~~~~---~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (103)
T d2h3la1          10 KQEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             EEEEEEEEECS---SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTTCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             cEEEEEEEccC---CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhccCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35567777764   5699999999753        347999999999999434999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEeCC
Q psy12310        109 QSSDTSISLGIQRNP  123 (201)
Q Consensus       109 k~~g~~v~L~v~R~~  123 (201)
                      +.++..+.|+|.|.-
T Consensus        87 ~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          87 KTFQNTVELIIVREV  101 (103)
T ss_dssp             HHCCSEEEEEEEEEE
T ss_pred             HhCCCeEEEEEEEEC
Confidence            999999999999853

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-16  Score=117.95  Aligned_cols=91  Identities=27%  Similarity=0.445  Sum_probs=80.7

Q ss_pred             CCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        32 ~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      |.+...+.+.|+|.|..  .+|||+|.+|.+...+++|..|.++++| .+| |++||+|++|||+++.+++|.+|+.+|+
T Consensus        13 p~~~~~~~~~v~l~k~~--~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~   90 (123)
T d1ueqa_          13 ASQLKGTFLSTTLKKSN--MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ   90 (123)
T ss_dssp             STTCCSEEEEEEEECCT--TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             hhHcCCeEEEEEEEECC--CeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45556788899999864  6799999999998889999999999999 655 9999999999999999999999999998


Q ss_pred             CC--CCeEEEEEEeCCC
Q psy12310        110 SS--DTSISLGIQRNPP  124 (201)
Q Consensus       110 ~~--g~~v~L~v~R~~~  124 (201)
                      .+  +..|.|+|.|...
T Consensus        91 ~~~~g~~v~L~v~R~~~  107 (123)
T d1ueqa_          91 SVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             TSCTTCEEEEEEEESCC
T ss_pred             cCCCCCEEEEEEEcCCC
Confidence            76  6889999999643

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5e-17  Score=118.41  Aligned_cols=85  Identities=21%  Similarity=0.347  Sum_probs=75.9

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      .+.++|+|.|..  .+|||.|.+|.+.   ..++||.+|.++||| .+| |++||+|++|||+++.+++|.+++.+|+.+
T Consensus         7 g~~~~V~l~k~~--~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~   84 (110)
T d1um1a_           7 GYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG   84 (110)
T ss_dssp             CCEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC
T ss_pred             CCEEEEEEEECC--CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            357899999964  5799999998764   347999999999999 766 999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy12310        112 DTSISLGIQRNP  123 (201)
Q Consensus       112 g~~v~L~v~R~~  123 (201)
                      +..+.|+|.|..
T Consensus        85 ~~~v~l~v~r~~   96 (110)
T d1um1a_          85 GKKMRFLVAKSD   96 (110)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEeCC
Confidence            999999998865

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.8e-18  Score=122.33  Aligned_cols=87  Identities=23%  Similarity=0.424  Sum_probs=78.9

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT  113 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~  113 (201)
                      ..+.++|+|.|+.  .+|||+|.||.+...+++|..|.+++|| .+| |++||+|++|||.++.+++|.+++.+|+.++.
T Consensus         9 ~~e~~~v~l~k~~--~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~   86 (103)
T d1wfva_           9 DFDYFTVDMEKGA--KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGR   86 (103)
T ss_dssp             CSCCEECCEECCT--TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCS
T ss_pred             CceEEEEEEEeCC--CccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCC
Confidence            4578899999863  6799999999998889999999999999 665 99999999999999999999999999998899


Q ss_pred             eEEEEEEeCCC
Q psy12310        114 SISLGIQRNPP  124 (201)
Q Consensus       114 ~v~L~v~R~~~  124 (201)
                      .|.|+|.|...
T Consensus        87 ~v~l~v~R~~~   97 (103)
T d1wfva_          87 RVRLLLKRGTG   97 (103)
T ss_dssp             EECEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            99999998754

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.2e-17  Score=118.00  Aligned_cols=85  Identities=28%  Similarity=0.382  Sum_probs=74.1

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ....+.|.+.+. +..+|||+|.+|.+...++||..|.++||| .+||++||+|++|||+++.+++|.+++++|+.++ .
T Consensus         6 ~~~~~~v~i~~~-~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~-~   83 (101)
T d1x5na1           6 ENKEKKVFISLV-GSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR-S   83 (101)
T ss_dssp             CCSSEEEEECCC-SSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCS-S
T ss_pred             CCccEEEEEEee-CCCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCC-C
Confidence            345567888775 467899999999998889999999999999 8999999999999999999999999999999885 4


Q ss_pred             EEEEEEeC
Q psy12310        115 ISLGIQRN  122 (201)
Q Consensus       115 v~L~v~R~  122 (201)
                      +.++|.+.
T Consensus        84 ~~l~v~~~   91 (101)
T d1x5na1          84 LTISIVAA   91 (101)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEEC
Confidence            66777654

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=117.82  Aligned_cols=83  Identities=23%  Similarity=0.308  Sum_probs=75.4

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.+.|+|.|.  ..+|||+|.+|.+  .++||..|.++||| +++|++||+|++|||+++.+++|.+|+.+|+.++..|+
T Consensus        19 ~~r~v~l~k~--~~glG~~i~gg~~--~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   94 (117)
T d1uita_          19 EPRHVKVQKG--SEPLGISIVSGEK--GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCEEEEEECS--SCCCCEEEEECTT--SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEEEeC--CCccCEEEEccCC--CCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEE
Confidence            5678999985  3679999999876  58999999999999 89999999999999999999999999999999999999


Q ss_pred             EEEEeCCC
Q psy12310        117 LGIQRNPP  124 (201)
Q Consensus       117 L~v~R~~~  124 (201)
                      |++.|...
T Consensus        95 l~v~~~p~  102 (117)
T d1uita_          95 ILAQYNPH  102 (117)
T ss_dssp             EEECCCSC
T ss_pred             EEEEECCc
Confidence            99987654

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-17  Score=113.10  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=68.8

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG  118 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~  118 (201)
                      .+|.|.|++...+|||++.+|       +|.+|.+||+| ++||++||+|++|||.++.+++|.+++.+|+.++..+.|+
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g-------~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~   74 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK   74 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC-------EEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEE
Confidence            478888887778999999875       79999999999 8999999999999999999999999999999999999999


Q ss_pred             EEe
Q psy12310        119 IQR  121 (201)
Q Consensus       119 v~R  121 (201)
                      |..
T Consensus        75 viP   77 (79)
T d1y7na1          75 TMP   77 (79)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            853

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.5e-17  Score=121.13  Aligned_cols=87  Identities=22%  Similarity=0.442  Sum_probs=75.4

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      ....++|+|.|..  .+|||+|.||.+.   ..++||.+|.+||+| +.| |++||+|++|||.++.+++|.+|+.+|+.
T Consensus        27 ~~~~~~V~l~k~~--~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~  104 (130)
T d1i16a_          27 EATVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             SEEEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             CCeEEEEEEEeCC--CccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHc
Confidence            3457889999964  5799999999763   468999999999999 766 99999999999999999999999999998


Q ss_pred             CC-CeEEEEEEeCCC
Q psy12310        111 SD-TSISLGIQRNPP  124 (201)
Q Consensus       111 ~g-~~v~L~v~R~~~  124 (201)
                      +. ..|.|+|.|...
T Consensus       105 ~~~~~v~l~v~r~~~  119 (130)
T d1i16a_         105 LPDGPVTIVIRRKSL  119 (130)
T ss_dssp             SCSSEEEEEEEEESS
T ss_pred             CCCCeEEEEEEcCCC
Confidence            74 589999998653

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-17  Score=118.02  Aligned_cols=88  Identities=28%  Similarity=0.541  Sum_probs=76.4

Q ss_pred             CCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-cc--CCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310         34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AA--ELKRGDIIRKIGDYDSRDLRHKDATNFFQS  110 (201)
Q Consensus        34 ~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a--gL~~GD~Il~Ing~~v~~~~~~~av~~ik~  110 (201)
                      .|....++|+|.|+ ...+|||+|.||.+...+++|.+|.++||| ++  +|++||+|++|||.++.+++|.+++.+|+.
T Consensus         4 ~P~~~~~~v~l~~~-~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~   82 (106)
T d2cs5a1           4 IPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   82 (106)
T ss_dssp             CCSSCCEEEEECCC-SSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEeC-CCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45667889999886 467899999999988889999999999999 65  899999999999999999999999999986


Q ss_pred             C----CCeEEEEEEeC
Q psy12310        111 S----DTSISLGIQRN  122 (201)
Q Consensus       111 ~----g~~v~L~v~R~  122 (201)
                      +    ...|.|+|.|.
T Consensus        83 ~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          83 SCERHSGELMLLVRPN   98 (106)
T ss_dssp             HHHCCSSCEEEEEECC
T ss_pred             CCCCCCcEEEEEECCC
Confidence            4    34688888654

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.5e-16  Score=116.49  Aligned_cols=87  Identities=25%  Similarity=0.378  Sum_probs=76.2

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      ++.+|+|.|. ...+|||+|.+|.+.       ..+++|.+|.++||| .+| |++||+|++|||+++.+++|.+++.+|
T Consensus        10 ~~~~V~l~r~-~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll   88 (114)
T d1uewa_          10 QTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCEEEEEECC-TTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             eeEEEEEEeC-CCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHH
Confidence            5778999986 467899999998653       347899999999999 665 999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEeCCCC
Q psy12310        109 QSSDTSISLGIQRNPPG  125 (201)
Q Consensus       109 k~~g~~v~L~v~R~~~~  125 (201)
                      +.++..|+|+|.|....
T Consensus        89 ~~~~~~v~l~V~r~~~~  105 (114)
T d1uewa_          89 KDAGLSVTLRIIPQEEL  105 (114)
T ss_dssp             HHTTTEEEEEECCCSCC
T ss_pred             HcCCCeEEEEEEeCCCc
Confidence            99899999999886543

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.4e-17  Score=112.16  Aligned_cols=76  Identities=17%  Similarity=0.256  Sum_probs=69.1

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      +.++|+|.|+ ....|||++.+|       +|.+|.+|||| .+||++||+|++|||+++.+++|.+++.+|+.++..++
T Consensus         4 ~pr~V~l~k~-~~g~~Gf~i~~g-------~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~   75 (82)
T d1r6ja_           4 DPRTITMHKD-STGHVGFIFKNG-------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT   75 (82)
T ss_dssp             CCEEEEEECC-TTSCCCEEEETT-------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCEEEEEEeC-CCCCcCEEEEEE-------EEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEE
Confidence            5678999997 356799999865       69999999999 89999999999999999999999999999999999999


Q ss_pred             EEEEe
Q psy12310        117 LGIQR  121 (201)
Q Consensus       117 L~v~R  121 (201)
                      |+|..
T Consensus        76 l~v~p   80 (82)
T d1r6ja_          76 ITIMP   80 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99863

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.8e-17  Score=116.37  Aligned_cols=82  Identities=15%  Similarity=0.293  Sum_probs=72.4

Q ss_pred             EEEEEecCCCCceeEEEEEeecCC---------CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFF  108 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~---------~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~i  108 (201)
                      ++|+|.|.+...+|||+|.+|.+.         ..++||..|.++||| .+| |++||+|++|||.++.+++|.+++.+|
T Consensus         4 r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l   83 (98)
T d1rzxa_           4 RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM   83 (98)
T ss_dssp             EEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHH
Confidence            478888875667899999998742         236899999999999 776 999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEe
Q psy12310        109 QSSDTSISLGIQR  121 (201)
Q Consensus       109 k~~g~~v~L~v~R  121 (201)
                      +.++..+.|+|+.
T Consensus        84 ~~~~~~v~l~v~p   96 (98)
T d1rzxa_          84 VANSSNLIITVKP   96 (98)
T ss_dssp             HHTCTEEEEEEEC
T ss_pred             HcCCCeEEEEEEe
Confidence            9999999999874

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.7e-17  Score=113.73  Aligned_cols=81  Identities=23%  Similarity=0.436  Sum_probs=71.7

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSD  112 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g  112 (201)
                      +.++|+|.|..  .+|||+|.+|.+.   ..+++|.+|.++||| .+| |++||+|++|||.++.+++|.+++++|+.++
T Consensus         2 ~~~~V~l~K~~--~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~   79 (88)
T d2fnea1           2 QCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK   79 (88)
T ss_dssp             EEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             eEEEEEEEeCC--CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46789999863  5799999998653   347999999999999 655 9999999999999999999999999999999


Q ss_pred             CeEEEEEE
Q psy12310        113 TSISLGIQ  120 (201)
Q Consensus       113 ~~v~L~v~  120 (201)
                      ..++|+|.
T Consensus        80 ~~v~L~Vl   87 (88)
T d2fnea1          80 GTVTLMVL   87 (88)
T ss_dssp             SSEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999885

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.67  E-value=5.5e-17  Score=114.77  Aligned_cols=83  Identities=20%  Similarity=0.374  Sum_probs=71.7

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC---
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS---  111 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~---  111 (201)
                      .++|+|.|+ ...+|||++.||.+.  +.++||.+|.|+||| ..| |++||+|++|||.++.+++|.+|+++++.+   
T Consensus         2 i~tV~l~k~-~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~   80 (92)
T d2f0aa1           2 IITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHK   80 (92)
T ss_dssp             EEEEEECHH-HHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeC-CCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            468999986 356799999999764  358999999999999 655 999999999999999999999999999764   


Q ss_pred             CCeEEEEEEeC
Q psy12310        112 DTSISLGIQRN  122 (201)
Q Consensus       112 g~~v~L~v~R~  122 (201)
                      ...+.|+|.|.
T Consensus        81 ~~~v~L~V~R~   91 (92)
T d2f0aa1          81 PGPIVLTVAKL   91 (92)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCcEEEEEEeC
Confidence            45799999885

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.7e-16  Score=114.10  Aligned_cols=86  Identities=16%  Similarity=0.289  Sum_probs=72.9

Q ss_pred             eEEEEEecCCC-----CceeEEEEEeecCC-----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHH
Q psy12310         39 TFTVVIKRPNR-----HHSWGLRIAGGCDL-----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATN  106 (201)
Q Consensus        39 ~~~V~L~r~~~-----~~~~Gf~i~gG~~~-----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~  106 (201)
                      ...+.|.|+..     ..+|||+|.||.+.     ..+++|..|.++||| .+| |++||+|++|||.++.+++|.+++.
T Consensus        13 ~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~   92 (117)
T d1ujda_          13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS   92 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             ceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHH
Confidence            34677776521     35699999999764     236899999999999 766 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEeCCC
Q psy12310        107 FFQSSDTSISLGIQRNPP  124 (201)
Q Consensus       107 ~ik~~g~~v~L~v~R~~~  124 (201)
                      +|+.++..+.|+|.|...
T Consensus        93 ~i~~~~~~v~l~v~r~~~  110 (117)
T d1ujda_          93 IISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHSCCSSCEEEEEESSCC
T ss_pred             HHHcCCCeEEEEEEECCC
Confidence            999998899999988653

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.6e-16  Score=112.28  Aligned_cols=83  Identities=19%  Similarity=0.389  Sum_probs=70.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCC-CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS  114 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~-~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~  114 (201)
                      ..+.|.|.|. .+.+|||+|.||.+. ..+++|..|.+|||| .+| |++||+|++|||.++.+++|.+|+.+|+.++..
T Consensus         8 ~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   86 (107)
T d1x6da1           8 GIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   86 (107)
T ss_dssp             TEEEEEEECC-TTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CcEEEEEEcC-CCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCC
Confidence            4567888876 467899999999874 568999999999999 665 999999999999999999999999999988665


Q ss_pred             EEEEEEe
Q psy12310        115 ISLGIQR  121 (201)
Q Consensus       115 v~L~v~R  121 (201)
                      +.+++.+
T Consensus        87 ~~l~v~~   93 (107)
T d1x6da1          87 RQAVIVT   93 (107)
T ss_dssp             SEEEEEE
T ss_pred             EEEEEEE
Confidence            5555544

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.3e-16  Score=114.05  Aligned_cols=78  Identities=18%  Similarity=0.317  Sum_probs=68.1

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      .++|+|.|. ...+|||++.++.+ ..+++|..|.+|||| ++| |++||+|++|||.++.+++|.+++.+|+.+...+.
T Consensus         2 i~~V~l~k~-~~~glG~~i~~~~~-~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~   79 (112)
T d1qaua_           2 VISVRLFKR-KVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH   79 (112)
T ss_dssp             EEEEEEECB-TTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSE
T ss_pred             eEEEEEEEC-CCCcEeEEEEeecC-CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcE
Confidence            578999886 56789999999877 578999999999999 887 99999999999999999999999999998754433


Q ss_pred             EE
Q psy12310        117 LG  118 (201)
Q Consensus       117 L~  118 (201)
                      +.
T Consensus        80 ~~   81 (112)
T d1qaua_          80 VV   81 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4e-16  Score=111.08  Aligned_cols=83  Identities=19%  Similarity=0.352  Sum_probs=70.0

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      ......|++.+.   .+|||+|.||.+.  ..++||..|.+|||| .+| |++||+|++|||+++.+++|.+|+.+|+.+
T Consensus         6 ~~~~~~v~~~~~---~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   82 (96)
T d1wi4a1           6 DPAFRVITVTKE---TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   82 (96)
T ss_dssp             CTTEEEEEECCS---SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CCcEEEEEecCC---CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            335667788764   4699999999764  457899999999999 666 999999999999999999999999999865


Q ss_pred             ----CCeEEEEEEe
Q psy12310        112 ----DTSISLGIQR  121 (201)
Q Consensus       112 ----g~~v~L~v~R  121 (201)
                          ...+.|.+.|
T Consensus        83 ~~~~~~~vel~~~R   96 (96)
T d1wi4a1          83 KLRSESPWEIAFIR   96 (96)
T ss_dssp             CCSSSSCEEEEEEC
T ss_pred             cCCCCCeEEEEEEC
Confidence                4678888765

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.4e-16  Score=116.14  Aligned_cols=90  Identities=22%  Similarity=0.372  Sum_probs=73.1

Q ss_pred             CCCCCCceEEEEEecCCCCceeEEEEEeecCC----CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHH
Q psy12310         32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDAT  105 (201)
Q Consensus        32 ~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~----~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av  105 (201)
                      ...-+.+...|+|.|. ...+|||+|.||.+.    ..+++|..|.+++|| +.| |++||+|++|||+++.+++|.+++
T Consensus         9 ~~~~~~~~~ev~l~k~-~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~   87 (122)
T d1v5qa_           9 GQVVHTETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN   87 (122)
T ss_dssp             CCCCCEEEEEEEECCC-SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHH
T ss_pred             CccccceeEEEEEecC-CCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHH
Confidence            3334457889999987 456899999998743    457999999999999 654 999999999999999999999999


Q ss_pred             HHHhCCCCe--EEEEEEeC
Q psy12310        106 NFFQSSDTS--ISLGIQRN  122 (201)
Q Consensus       106 ~~ik~~g~~--v~L~v~R~  122 (201)
                      ++|+.++..  +.|.+.|+
T Consensus        88 ~~lk~~~~~~~l~l~~~~~  106 (122)
T d1v5qa_          88 QLLRDSSITSKVTLEIEFD  106 (122)
T ss_dssp             HHHHHHTTTTCEEEEEEEE
T ss_pred             HHHHcCCCceEEEEEEecc
Confidence            999877544  55554443

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.4e-16  Score=109.71  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=71.6

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~  116 (201)
                      .+.|.|.|. ...+|||.+.++.+  .+++|..|.+|||| .+| |++||+|++|||.++.+++|.+++.+++.++..|+
T Consensus         2 ~R~V~l~k~-~~~~lG~~l~~~~~--~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~   78 (88)
T d1kwaa_           2 SRLVQFQKN-TDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT   78 (88)
T ss_dssp             CEEEEEEEC-SSSCCCEEEECSCG--GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred             cEEEEEEeC-CCCCccEEEEEcCC--CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            457899987 56899999998754  47999999999999 777 99999999999999999999999999999988999


Q ss_pred             EEEEe
Q psy12310        117 LGIQR  121 (201)
Q Consensus       117 L~v~R  121 (201)
                      |+|.+
T Consensus        79 L~i~p   83 (88)
T d1kwaa_          79 FKIVP   83 (88)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99874

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.9e-16  Score=113.19  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=76.1

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCC-CCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSD  112 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g  112 (201)
                      ....+.|+|.|. ...+|||.|.+|.+. ..+++|..|.++++| .. .|++||+|++|||+++.+++|.+++.+|+.++
T Consensus        13 ~~~p~~V~l~k~-~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~   91 (117)
T d1v62a_          13 ASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             SSSSEEEEEECC-TTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCCCEEEEEEcC-CCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC
Confidence            334567999886 356899999999865 346899999999999 65 59999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCC
Q psy12310        113 TSISLGIQRNPP  124 (201)
Q Consensus       113 ~~v~L~v~R~~~  124 (201)
                      ..++|+|.|...
T Consensus        92 ~~v~l~v~~~~~  103 (117)
T d1v62a_          92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CcEEEEEEECCC
Confidence            999999987654

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.2e-16  Score=106.70  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=70.5

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~  116 (201)
                      .+.|.|.|. ...+|||++.++.+   +++|.+|.+|||| .+||++||+|++|||+++.++++.+++.+++.+ +..+.
T Consensus         3 pr~v~l~k~-~~~~lG~~l~~~~~---g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~   78 (85)
T d1w9ea1           3 PREVILCKD-QDGKIGLRLKSIDN---GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKIT   78 (85)
T ss_dssp             CEEEEEECC-TTSCCSEEEEEETT---EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEE
T ss_pred             CEEEEEEeC-CCCCEeEEEEeCCC---CEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEE
Confidence            457889887 46789999988754   7999999999999 899999999999999999999999999999876 78899


Q ss_pred             EEEEe
Q psy12310        117 LGIQR  121 (201)
Q Consensus       117 L~v~R  121 (201)
                      |+|++
T Consensus        79 l~v~~   83 (85)
T d1w9ea1          79 MTIRD   83 (85)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            98864

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4.5e-16  Score=116.26  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=71.6

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCC----CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLD----SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~----~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      ..++|+|.+. +..+|||+|.||.+..    .++||..|.++++| .+| |++||+|++|||.++.+++|.+++++|+.+
T Consensus        25 ~~~~v~l~~~-~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a  103 (127)
T d1wg6a_          25 LTLEIPLNDS-GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS  103 (127)
T ss_dssp             EEEEEECSSS-TTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             EEEEEEEccC-CCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhc
Confidence            3456666665 4577999999998642    37899999999999 655 999999999999999999999999999875


Q ss_pred             -------CCeEEEEEEeCC
Q psy12310        112 -------DTSISLGIQRNP  123 (201)
Q Consensus       112 -------g~~v~L~v~R~~  123 (201)
                             ...|+|+|.|..
T Consensus       104 ~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         104 MSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHHHHTCEEEEEEEECS
T ss_pred             ccccCCCCCEEEEEEeeCC
Confidence                   468999999864

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.4e-16  Score=110.25  Aligned_cols=85  Identities=25%  Similarity=0.415  Sum_probs=72.4

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecC----CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQ  109 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~----~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik  109 (201)
                      +.+..+|+|.|. ...+|||+|.||.+    ...+++|.+|.++||| +.| |++||+|++|||+++.+++|.+++++|+
T Consensus         6 ~~e~~~V~l~~~-~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr   84 (99)
T d1x5ra1           6 HTETTEVVLCGD-PLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLR   84 (99)
T ss_dssp             SSEEEEEEECCC-TTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHH
T ss_pred             eeeeEEEEEEcC-CCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            446778999987 45789999999863    3568999999999999 665 9999999999999999999999999998


Q ss_pred             CC--CCeEEEEEEe
Q psy12310        110 SS--DTSISLGIQR  121 (201)
Q Consensus       110 ~~--g~~v~L~v~R  121 (201)
                      .+  ...+.|.+.+
T Consensus        85 ~~~~~~~l~l~v~~   98 (99)
T d1x5ra1          85 DAALAHKVVLEVEF   98 (99)
T ss_dssp             HHHTTTCEEEEEEE
T ss_pred             hCCCCCEEEEEEEc
Confidence            66  5567777765

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.1e-16  Score=114.48  Aligned_cols=78  Identities=18%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEE
Q psy12310         39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSIS  116 (201)
Q Consensus        39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~  116 (201)
                      .++|+|.|..  .+|||+|.|+    .+++|..|.++||| .+||++||+|++|||+++.+++|.+++.+|+.+ +..|+
T Consensus        16 pr~v~l~k~~--~g~Gf~i~g~----~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~   89 (111)
T d1vaea_          16 PRGIHFTVEE--GDLGFTLRGN----TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVE   89 (111)
T ss_dssp             CCCCCEECCS--SCCSCCEESS----SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEEC
T ss_pred             CEEEEEEECC--CccCEEEECC----ccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEE
Confidence            3468888864  5799999875    46999999999999 889999999999999999999999999999987 56899


Q ss_pred             EEEEeC
Q psy12310        117 LGIQRN  122 (201)
Q Consensus       117 L~v~R~  122 (201)
                      |+|.+.
T Consensus        90 l~v~~~   95 (111)
T d1vaea_          90 MKVVSL   95 (111)
T ss_dssp             EEEECE
T ss_pred             EEEECC
Confidence            988764

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-15  Score=102.92  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=64.9

Q ss_pred             EEEEecCCCCceeEEEEEeecC--CCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCC--e
Q psy12310         41 TVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT--S  114 (201)
Q Consensus        41 ~V~L~r~~~~~~~Gf~i~gG~~--~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~--~  114 (201)
                      .|+|.|. .+.+|||++.+|..  ...+++|.+|.++||| .+| |++||+|++|||+++.+++|.+++.+|+.+..  .
T Consensus         1 eV~l~k~-~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~   79 (85)
T d1x45a1           1 DVFIEKQ-KGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSR   79 (85)
T ss_dssp             EEEEECC-TTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSE
T ss_pred             CeEEEeC-CCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            3778886 45789999975432  2458999999999999 665 99999999999999999999999999998744  5


Q ss_pred             EEEEE
Q psy12310        115 ISLGI  119 (201)
Q Consensus       115 v~L~v  119 (201)
                      +.|+|
T Consensus        80 v~L~V   84 (85)
T d1x45a1          80 VKLNI   84 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66655

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.4e-16  Score=111.39  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             CCceeEEEEEeecCC---CCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEe
Q psy12310         49 RHHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQR  121 (201)
Q Consensus        49 ~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R  121 (201)
                      ...+|||+|.||++.   ..++||..|.+|||| ..| |++||+|++|||.++.+++|.+|+.+|+.+  +..+.|+|.|
T Consensus        28 ~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          28 SGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             CSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            357799999999764   237999999999999 655 999999999999999999999999999865  5689999988


Q ss_pred             C
Q psy12310        122 N  122 (201)
Q Consensus       122 ~  122 (201)
                      +
T Consensus       108 P  108 (108)
T d2cssa1         108 P  108 (108)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=5.5e-15  Score=105.87  Aligned_cols=79  Identities=15%  Similarity=0.307  Sum_probs=70.3

Q ss_pred             ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310         38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI  115 (201)
Q Consensus        38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v  115 (201)
                      ....|.|.|. .+.+|||.+.++.   .+++|.+|.+||+| .+| |++||+|++|||.++.+++|.+++++|+.++..|
T Consensus        18 ~i~~V~l~k~-~~~~lG~~v~~~~---~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v   93 (100)
T d1va8a1          18 TVKIVRIEKA-RDIPLGATVRNEM---DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTL   93 (100)
T ss_dssp             ECEEEEEEEC-TTCCCCEEEEECS---SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEE
T ss_pred             eEEEEEEEeC-CCCCccEEEEecC---CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeE
Confidence            4557889887 5688999998764   48999999999999 776 9999999999999999999999999999998889


Q ss_pred             EEEEE
Q psy12310        116 SLGIQ  120 (201)
Q Consensus       116 ~L~v~  120 (201)
                      +|+|.
T Consensus        94 ~L~v~   98 (100)
T d1va8a1          94 TFVLI   98 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99885

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=8.3e-15  Score=107.96  Aligned_cols=74  Identities=28%  Similarity=0.390  Sum_probs=65.7

Q ss_pred             ceeEEEEEeecCCC-CCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC----CCeEEEEEEeCC
Q psy12310         51 HSWGLRIAGGCDLD-SPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS----DTSISLGIQRNP  123 (201)
Q Consensus        51 ~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~----g~~v~L~v~R~~  123 (201)
                      .+|||+|.||.+.. .+++|..|.++||| ..| |++||+|++|||.++.+++|.+++.+|+.+    +..|+|+|.|..
T Consensus        28 ~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~p  107 (118)
T d1v6ba_          28 GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCC
Confidence            67999999998754 37999999999999 665 999999999999999999999999999854    678999999865


Q ss_pred             C
Q psy12310        124 P  124 (201)
Q Consensus       124 ~  124 (201)
                      .
T Consensus       108 p  108 (118)
T d1v6ba_         108 P  108 (118)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.1e-15  Score=106.15  Aligned_cols=81  Identities=21%  Similarity=0.331  Sum_probs=68.1

Q ss_pred             EEEEEecCCCCceeEEEEEeecCCCC-CcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC-----
Q psy12310         40 FTVVIKRPNRHHSWGLRIAGGCDLDS-PIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-----  111 (201)
Q Consensus        40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~-pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~-----  111 (201)
                      ..|++.|.  ..+|||+|.||.+... .++|..|.+++|| ++| |++||+|++|||.++.+++|.+++.+|+.+     
T Consensus         8 ~vv~~~k~--~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~   85 (103)
T d1ufxa_           8 TLVRVKKS--AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             EEEEEECC--SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             EEEEEEeC--CCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCc
Confidence            35778775  4789999999987644 4899999999999 665 999999999999999999999999999875     


Q ss_pred             CCeEEEEEEeC
Q psy12310        112 DTSISLGIQRN  122 (201)
Q Consensus       112 g~~v~L~v~R~  122 (201)
                      ...+.|.+.+.
T Consensus        86 ~~~~~l~v~~~   96 (103)
T d1ufxa_          86 RDYIDFLVTEF   96 (103)
T ss_dssp             CSEEEEEECCC
T ss_pred             cceEEEEEeCC
Confidence            25677777654

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.55  E-value=1.6e-14  Score=101.72  Aligned_cols=76  Identities=20%  Similarity=0.326  Sum_probs=67.3

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCCC
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPG  125 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~~  125 (201)
                      ..++|+.+....+...+++|..|.++||| +|||++||+|++|||.++.++++.+++.+|++. |..|.|+|.|.+..
T Consensus         4 ~~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~   81 (92)
T d1fc6a3           4 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP   81 (92)
T ss_dssp             CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred             eEEEEEEEEEcCCCCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCc
Confidence            46788888776655678999999999999 999999999999999999999999999999854 88999999997653

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.5e-14  Score=105.68  Aligned_cols=84  Identities=13%  Similarity=0.182  Sum_probs=73.2

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC--
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSS--  111 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~ag-L~~GD~Il~Ing~~v~~~~~~~av~~ik~~--  111 (201)
                      ..+.++|+|.+.  ..+|||.+.++.+   .++|..|.++||| ++| |++||+|++|||+++.+++|.+++++|+.+  
T Consensus        25 ~~~~~~v~l~~g--~~GlG~~i~~~~~---~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~   99 (126)
T d1wifa_          25 LNKVIQTKLTVG--NLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI   99 (126)
T ss_dssp             CCCEEEEEEECC--TTCCCCCEEEETT---EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCS
T ss_pred             CCcEEEEEEeeC--CCcEEEEEEecCC---cEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCC
Confidence            346888999885  4679999987643   5899999999999 776 999999999999999999999999999975  


Q ss_pred             CCeEEEEEEeCCC
Q psy12310        112 DTSISLGIQRNPP  124 (201)
Q Consensus       112 g~~v~L~v~R~~~  124 (201)
                      +..|+|+|.|+..
T Consensus       100 g~~v~L~v~R~~~  112 (126)
T d1wifa_         100 GTVLQIKAYRGFL  112 (126)
T ss_dssp             SCEEEEEEESSSS
T ss_pred             CCEEEEEEEeCCC
Confidence            6899999999753

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.3e-14  Score=99.07  Aligned_cols=80  Identities=20%  Similarity=0.343  Sum_probs=65.4

Q ss_pred             CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CC
Q psy12310         37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DT  113 (201)
Q Consensus        37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~  113 (201)
                      .+.++|+|.|..  .+|||+|.+|.+   ...+..+  ..++ .++|++||+|++|||+++.+++|.+++++|+..  +.
T Consensus         9 ~e~~~v~l~k~~--~glGf~i~g~~~---~~~~~~~--~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~   81 (96)
T d1ujva_           9 AELMTLTIVKGA--QGFGFTIADSPT---GQRVKQI--LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGS   81 (96)
T ss_dssp             CCCEEEEEECCS--SSSSEEEEEETT---EEEEEEE--SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTS
T ss_pred             ceEEEEEEEeCC--CcccEEEEeeCC---CceEeec--cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            457899999963  579999999876   2333333  2355 689999999999999999999999999999864  78


Q ss_pred             eEEEEEEeCC
Q psy12310        114 SISLGIQRNP  123 (201)
Q Consensus       114 ~v~L~v~R~~  123 (201)
                      .|+|+|.|..
T Consensus        82 ~v~l~v~R~~   91 (96)
T d1ujva_          82 ETSLIIHRGS   91 (96)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEEECC
Confidence            9999999864

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-13  Score=100.11  Aligned_cols=87  Identities=24%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             CCceEEEEEecCCCCceeEEEEEeecC--CCCCcEEEEECCCCcc-cc-CCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310         36 HQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPA-AA-ELKRGDIIRKIGDYDSRDLRHKDATNFFQSS  111 (201)
Q Consensus        36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~--~~~pi~V~~V~~gspA-~a-gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~  111 (201)
                      ..+...|+|.|.+...+|||+|.++.+  ...++||..|.+|||| .. .|++||+|++|||.++.++  .+++.+++.+
T Consensus        17 ~~e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~--~~~~~~l~~~   94 (124)
T d1wh1a_          17 ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSE   94 (124)
T ss_dssp             SCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCS
T ss_pred             CceeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCH--HHHHHHHhhC
Confidence            335667888886555789999998865  3568999999999999 55 5999999999999999864  5566677765


Q ss_pred             -CCeEEEEEEeCCC
Q psy12310        112 -DTSISLGIQRNPP  124 (201)
Q Consensus       112 -g~~v~L~v~R~~~  124 (201)
                       +..|.|++.|...
T Consensus        95 ~~~~v~l~v~r~~~  108 (124)
T d1wh1a_          95 ENKNFSLLIARPEL  108 (124)
T ss_dssp             SCCSCCEEEEECSS
T ss_pred             CCCcEEEEEEeCCC
Confidence             7789999988643

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=3.2e-12  Score=88.79  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310         50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP  123 (201)
Q Consensus        50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~  123 (201)
                      +..+|+.+....+ ..+++|..|.++||| ++||++||+|++|||.++.++.+...+......|..+.|+|.|.+
T Consensus         2 ~~~LGv~~~~~~~-~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           2 HASLGVQVTNDKD-TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             CEECCEEEECCC--CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CCEEeEEEEecCC-CCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCcHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            3568998877665 568999999999999 999999999999999999886554443233445899999999954

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1e-10  Score=81.08  Aligned_cols=60  Identities=28%  Similarity=0.492  Sum_probs=53.0

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| ++||++||+|++|||+++.++  .+...+++..+..+.|+|.|+++.
T Consensus        24 ~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~~~~   84 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGDST   84 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECSSH--HHHHHHTTTCCSCCCEEEESSSCE
T ss_pred             CCeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCEEEEEEEECCEE
Confidence            568999999999999 899999999999999999864  566777888888999999998753

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.94  E-value=1.8e-09  Score=75.29  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=50.1

Q ss_pred             CCcEEEEECCC--------Ccc-ccCC-CCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCCC
Q psy12310         65 SPIVITKVYPG--------TPA-AAEL-KRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPG  125 (201)
Q Consensus        65 ~pi~V~~V~~g--------spA-~agL-~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~~  125 (201)
                      -.+.|.+|++|        ||| ++|| ++||+|++|||+++.++..  .+.++++. |..|.|+|.|.+..
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~~--~~~~l~g~~G~~V~L~i~R~g~~   81 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSN--IYRVLSEKAGTSARIRLSGKGGD   81 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTBC--HHHHHHTTTTSEEEEEEECSSSC
T ss_pred             CeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcce--eEEEEecCCCCEEEEEEEeCCCC
Confidence            35899999988        999 8999 8999999999999998753  55677655 99999999997654

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.5e-09  Score=76.39  Aligned_cols=59  Identities=27%  Similarity=0.472  Sum_probs=51.0

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| .+||++||+|++|||.++.++  .+....++ .+..+.++|.|+++.
T Consensus        30 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~s~--~dl~~~l~-~g~~v~l~v~R~g~~   89 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVR-TQSQLAVQIRRGRET   89 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHT-TCSSEEEEEEETTEE
T ss_pred             CCcEEEEEECCCchHhhcCCCCCcEEEEECCEEcCCH--HHHHHHhc-CCCEEEEEEEECCEE
Confidence            457999999999999 999999999999999999875  44555664 688999999999865

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.9e-10  Score=81.37  Aligned_cols=64  Identities=17%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCCc
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK  127 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~~  127 (201)
                      ..+++|.+|.++||| .+||++||+|++|||.++.++.+....-.-...|..+.|+|.|+++...
T Consensus        25 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~   89 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLT   89 (99)
T ss_dssp             --CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC-----CCC
T ss_pred             CCccEEEEecCCCCHHHcCCCcceEEEEECCEecccHHHHHHHHHcCCCCCEEEEEEEECCEEEE
Confidence            357999999999999 9999999999999999999886654332223558999999999987643

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=4e-10  Score=78.89  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=50.6

Q ss_pred             CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      ..+++|..|.++||| .+||++||+|++|||.++.++.+...  .+.  ..|..+.|+|.|+++.
T Consensus        26 ~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~~~l~~--~l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRA--QVGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHH--HTTSSBTTCCCEEEEESSSCE
T ss_pred             CCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCHHHHHH--HHHhCCCCCEEEEEEEECCEE
Confidence            358999999999999 89999999999999999998866543  443  3488999999998754

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.80  E-value=2.1e-09  Score=76.49  Aligned_cols=58  Identities=21%  Similarity=0.349  Sum_probs=47.7

Q ss_pred             CCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCC
Q psy12310         65 SPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPP  124 (201)
Q Consensus        65 ~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~  124 (201)
                      .+++|..|.++|||+++|++||+|++|||+.+.++.  +....|..  .|..|.|+|.|++.
T Consensus         3 ~Gv~V~~V~~~sPA~~~L~~GD~I~~ing~~v~~~~--~l~~~i~~~~~G~~v~l~v~R~~~   62 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLT--TYSAALKTISVGEVINITTDQGTF   62 (103)
T ss_dssp             CCEEEEEECSSSGGGGTSCTTCEEEEETTEECSSHH--HHHHHHTTCCTTCEEEEEETTEEE
T ss_pred             CcEEEEEECCCChHHhcCCCCCEEEEECCEEcCCHH--HHHHHHhhCCCCCEEEEEEEECCE
Confidence            479999999999994359999999999999998754  44556643  48999999998753

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=2.7e-09  Score=73.66  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310         66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG  125 (201)
Q Consensus        66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~  125 (201)
                      ++.|..+.++|+| ++||++||+|++|||.++.+..+..  .++.  ..+..+.++|.|+++.
T Consensus        20 G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~~~~~--~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMN--TLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHH--HHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEecCCCCCHHHHCCCCCCCEEEEECCEEeecHHHHH--HHHHhhccccccEEEEEECCEE
Confidence            3566678889999 9999999999999999999875543  3443  3589999999998854