Psyllid ID: psy12318

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK
ccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEEccEEEEcccEEEEEccccccEEEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccEEEccccccccccccccccHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccHHHHcccHHHHHHHHHHHHHHHHcc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHHHcEEEEEEEcccccEEEcccccEcccccccEEEEEEEEEEEEHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHc
TYKIDDTIYDLTEEQNKLRETVASYCKThitpiaadidstndfKDLRKVWKDFGqlgllgitvpeefggsemgylDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHatkqqkekylpalcsgekigclamsepgsgsdvISMSLkaekkgdmyvLNGNKfwitngpdadIAVVYARtnpnadkkqhgISTFIVekgtpgfskgkklnklgmrgsntGELIfencqvpaenllggenkgAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKAcdrgsinskecAGVFLVAAENAVKVALEAIQClggngyindyptgrylrdaklyeigagtSEVRRIVIGRSINAEYK
TYKIDDTIYDLTEEQNKLRETVASYCKTHItpiaadidstndFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNpnadkkqhgistfivekgtpgfskgkklNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYeigagtsevrriVIGRSINAEYK
TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK
******TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLA*******************KGDMYVLNGNKFWITNGPDADIAVVYARTNP******HGISTFIVEKG******************NTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS******
*YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA***
TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK
TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
Q9JHI5424 Isovaleryl-CoA dehydrogen yes N/A 0.992 0.917 0.663 1e-154
Q5RBD5423 Isovaleryl-CoA dehydrogen yes N/A 0.989 0.917 0.646 1e-152
P26440423 Isovaleryl-CoA dehydrogen yes N/A 0.989 0.917 0.641 1e-152
P12007424 Isovaleryl-CoA dehydrogen yes N/A 0.992 0.917 0.645 1e-152
Q3SZI8426 Isovaleryl-CoA dehydrogen yes N/A 0.989 0.910 0.646 1e-151
Q9FS87401 Isovaleryl-CoA dehydrogen N/A N/A 0.966 0.945 0.616 1e-134
Q9FS88412 Isovaleryl-CoA dehydrogen N/A N/A 0.956 0.910 0.596 1e-133
Q9SWG0409 Isovaleryl-CoA dehydrogen yes N/A 0.959 0.919 0.608 1e-129
P45867379 Acyl-CoA dehydrogenase OS yes N/A 0.956 0.989 0.448 2e-82
P45857379 Acyl-CoA dehydrogenase OS no N/A 0.946 0.978 0.426 8e-82
>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1 Back     alignment and function desciption
 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/389 (66%), Positives = 312/389 (80%)

Query: 4   IDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
           +DD I  L EEQ +LR T++ + + ++ P A +ID TNDFK+LR+ WK  G LG+LGIT 
Sbjct: 36  VDDDINGLNEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITA 95

Query: 64  PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
           P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLCVNQI R+  + QKEKYLP L 
Sbjct: 96  PVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLI 155

Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
           SGE IG LAMSEP +GSDV+SM LKAEKKGD YVLNGNKFWITNGPDADI VVYA+T+  
Sbjct: 156 SGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLT 215

Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
           A     GI+ FIVEKG PGFS  KKL+KLGMRGSNT EL+FE+C+VPA N+L  E+KG Y
Sbjct: 216 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVY 275

Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
           VLMSGLDLERLV++ GP+GIMQA  D    Y+H R  FG +IG+FQLMQGK+ADM+  L 
Sbjct: 276 VLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMYTRLM 335

Query: 304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
           ASR Y+Y+VAKACD G I  K+CAGV L AAE A +VAL+ IQCLGGNGYIND+P GR+L
Sbjct: 336 ASRQYVYNVAKACDEGHIIPKDCAGVILYAAECATQVALDGIQCLGGNGYINDFPMGRFL 395

Query: 364 RDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
           RDAKLYEIGAGTSEVRR+VIGR+ NA+++
Sbjct: 396 RDAKLYEIGAGTSEVRRLVIGRAFNADFR 424

Mus musculus (taxid: 10090)
EC: 1EC: .EC: 3EC: .EC: 8EC: .EC: 4
>sp|Q5RBD5|IVD_PONAB Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1 Back     alignment and function description
>sp|P26440|IVD_HUMAN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1 Back     alignment and function description
>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2 Back     alignment and function description
>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1 Back     alignment and function description
>sp|Q9FS87|IVD2_SOLTU Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SWG0|IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2 Back     alignment and function description
>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA PE=2 SV=1 Back     alignment and function description
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
209571446416 isovaleryl coenzyme A dehydrogenase [Bom 0.997 0.939 0.685 1e-159
156546419423 PREDICTED: isovaleryl-CoA dehydrogenase, 0.994 0.921 0.679 1e-159
242024758423 isovaleryl-CoA dehydrogenase, putative [ 0.994 0.921 0.676 1e-157
313760586422 isovaleryl-CoA dehydrogenase, mitochondr 0.992 0.921 0.660 1e-156
327280200422 PREDICTED: isovaleryl-CoA dehydrogenase, 0.992 0.921 0.658 1e-156
58332612419 isovaleryl-CoA dehydrogenase [Xenopus (S 0.992 0.928 0.658 1e-156
260907811416 isovaleryl coenzyme A dehydrogenase [Hel 0.994 0.937 0.670 1e-155
321466669394 hypothetical protein DAPPUDRAFT_53968 [D 0.997 0.992 0.667 1e-155
383863239423 PREDICTED: isovaleryl-CoA dehydrogenase, 0.994 0.921 0.658 1e-154
118778933429 AGAP006780-PA [Anopheles gambiae str. PE 0.994 0.909 0.654 1e-154
>gi|209571446|ref|NP_001129356.1| isovaleryl coenzyme A dehydrogenase [Bombyx mori] gi|208609173|dbj|BAG72196.1| isovaleryl coenzyme A dehydrogenase [Bombyx mori] gi|209172195|dbj|BAG74561.1| isovaleryl Coenzyme A dehydrogenase [Bombyx mori] Back     alignment and taxonomy information
 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/391 (68%), Positives = 318/391 (81%)

Query: 2   YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
           Y IDD ++ L+EEQ +LR+ V  + +  + P AA+ID  N+FK+LR  WK  G LGLLGI
Sbjct: 26  YPIDDHVFGLSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPFWKKLGDLGLLGI 85

Query: 62  TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
           T   ++GG+   Y DH + MEELSR+S  + LS+ AHSNLCVNQINR+ T++QK KYLP 
Sbjct: 86  TASSDYGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPK 145

Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
           LCSGE IG LAMSEPGSGSDV+SM L+AEKKGD YVLNGNKFWITNGPDAD+ VVYA+TN
Sbjct: 146 LCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTN 205

Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241
            +  K+QHGIS F++EK  PGFS  +KL+KLGMRGSNTGEL+FE+C+VPA NLLG ENKG
Sbjct: 206 WSTSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQENKG 265

Query: 242 AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVA 301
            YVLMSGLDLERLV++AGPVG+MQA  D AF Y H R QFG  IGEFQL+QGK+ADM+  
Sbjct: 266 VYVLMSGLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTT 325

Query: 302 LSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361
           LSA R+YLY+VAKACD G +NSK+CAGV L  AE A +VAL+AIQ LGGNGYINDYPTGR
Sbjct: 326 LSACRSYLYNVAKACDNGHVNSKDCAGVILYCAEKATQVALDAIQILGGNGYINDYPTGR 385

Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
            LRDAKLYEIGAGTSEVRR++IGR++N EYK
Sbjct: 386 ILRDAKLYEIGAGTSEVRRMLIGRALNNEYK 416

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156546419|ref|XP_001607123.1| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242024758|ref|XP_002432793.1| isovaleryl-CoA dehydrogenase, putative [Pediculus humanus corporis] gi|212518302|gb|EEB20055.1| isovaleryl-CoA dehydrogenase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|313760586|ref|NP_001186490.1| isovaleryl-CoA dehydrogenase, mitochondrial [Gallus gallus] Back     alignment and taxonomy information
>gi|327280200|ref|XP_003224841.1| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|58332612|ref|NP_001011380.1| isovaleryl-CoA dehydrogenase [Xenopus (Silurana) tropicalis] gi|56788857|gb|AAH88561.1| isovaleryl Coenzyme A dehydrogenase [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|260907811|gb|ACX53707.1| isovaleryl coenzyme A dehydrogenase [Heliothis virescens] Back     alignment and taxonomy information
>gi|321466669|gb|EFX77663.1| hypothetical protein DAPPUDRAFT_53968 [Daphnia pulex] Back     alignment and taxonomy information
>gi|383863239|ref|XP_003707089.1| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|118778933|ref|XP_308965.3| AGAP006780-PA [Anopheles gambiae str. PEST] gi|116132618|gb|EAA04728.3| AGAP006780-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
UNIPROTKB|F1NF35424 IVD "Uncharacterized protein" 0.992 0.917 0.660 4.8e-142
MGI|MGI:1929242424 Ivd "isovaleryl coenzyme A deh 0.992 0.917 0.663 4.4e-139
UNIPROTKB|J3KR54426 IVD "Isovaleryl-CoA dehydrogen 0.989 0.910 0.641 1.7e-137
UNIPROTKB|P26440423 IVD "Isovaleryl-CoA dehydrogen 0.989 0.917 0.641 1.7e-137
RGD|2936424 Ivd "isovaleryl-CoA dehydrogen 0.992 0.917 0.645 5.8e-137
ZFIN|ZDB-GENE-030616-262425 ivd "isovaleryl Coenzyme A deh 0.987 0.910 0.642 5.8e-137
UNIPROTKB|Q3SZI8426 IVD "Isovaleryl-CoA dehydrogen 0.989 0.910 0.646 9.5e-137
UNIPROTKB|F1SSR4426 IVD "Uncharacterized protein" 0.989 0.910 0.639 2.9e-135
UNIPROTKB|E2RRP1423 IVD "Uncharacterized protein" 0.989 0.917 0.636 3.3e-134
WB|WBGene00015326419 ivd-1 [Caenorhabditis elegans 0.989 0.926 0.610 4.8e-133
UNIPROTKB|F1NF35 IVD "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 257/389 (66%), Positives = 317/389 (81%)

Query:     4 IDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
             +DDT+  L++EQ +LR+T+  +C+ H+ P A  ID  N+FK +R+ WK  G+LG+LGIT 
Sbjct:    36 VDDTVNGLSDEQRQLRQTMTKFCQEHLAPKAQQIDQENEFKGMREFWKKLGELGVLGITA 95

Query:    64 PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
             P E+GGS +GYLDHV+ MEE+SR+SA+VGLS+ AHSNLC+NQ+ R+ ++ QKEKYLP L 
Sbjct:    96 PVEYGGSALGYLDHVLVMEEVSRASAAVGLSYGAHSNLCINQLVRNGSEAQKEKYLPKLI 155

Query:   124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
             SGE IG LAMSEP +GSDV+SM LKA+KKGD YVLNGNKFWITNGPDAD+ +VYA+T+ N
Sbjct:   156 SGEHIGALAMSEPNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLIVYAKTDLN 215

Query:   184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
             A     GI+ FIVEKG PGFS  +KL+KLGMRGSNT ELIFE+C++PAEN+LG  +KG Y
Sbjct:   216 AVPASQGITAFIVEKGMPGFSTAQKLDKLGMRGSNTCELIFEDCKIPAENILGKLSKGVY 275

Query:   244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
             VLMSGLDLERLV+S GP+G+MQA  D A  Y+H R  FG RIG FQLMQGK+ADM+  L 
Sbjct:   276 VLMSGLDLERLVLSGGPLGLMQAVLDHAIPYLHVREAFGQRIGHFQLMQGKMADMYTRLM 335

Query:   304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
             A R Y+Y+VAKACD+G  N+K+CAGV L +AE A +VAL+ IQCLGGNGYINDYP GR+L
Sbjct:   336 ACRQYVYNVAKACDQGHFNAKDCAGVILFSAECATQVALDGIQCLGGNGYINDYPMGRFL 395

Query:   364 RDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
             RDAKLYEIGAGTSEVRR+VIGR+ NA +K
Sbjct:   396 RDAKLYEIGAGTSEVRRLVIGRAFNAAFK 424
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
MGI|MGI:1929242 Ivd "isovaleryl coenzyme A dehydrogenase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR54 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P26440 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2936 Ivd "isovaleryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-262 ivd "isovaleryl Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZI8 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSR4 IVD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRP1 IVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00015326 ivd-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46703ACDP_MYCLE1, ., 3, ., 9, 9, ., -0.35750.94380.9511yesN/A
Q9JHI5IVD_MOUSE1, ., 3, ., 8, ., 40.66320.99230.9174yesN/A
P63427ACDP_MYCTU1, ., 3, ., 9, 9, ., -0.34710.94380.9511yesN/A
P52042ACDS_CLOAB1, ., 3, ., 8, ., 10.42210.95660.9894yesN/A
P63428ACDP_MYCBO1, ., 3, ., 9, 9, ., -0.34710.94380.9511yesN/A
P45867ACDA_BACSU1, ., 3, ., 9, 9, ., -0.44850.95660.9894yesN/A
Q9SWG0IVD_ARATH1, ., 3, ., 8, ., 40.60840.95910.9193yesN/A
Q9FS87IVD2_SOLTU1, ., 3, ., 8, ., 40.61610.96680.9451N/AN/A
Q9FS88IVD1_SOLTU1, ., 3, ., 8, ., 40.59680.95660.9101N/AN/A
Q3SZI8IVD_BOVIN1, ., 3, ., 8, ., 40.64690.98970.9107yesN/A
Q5RBD5IVD_PONAB1, ., 3, ., 8, ., 40.64690.98970.9172yesN/A
P12007IVD_RAT1, ., 3, ., 8, ., 40.64520.99230.9174yesN/A
P26440IVD_HUMAN1, ., 3, ., 8, ., 40.64170.98970.9172yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.99.20.914
3rd Layer1.3.990.976
3rd Layer1.3.99.100.991

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 0.0
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 0.0
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 1e-145
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 1e-138
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 1e-120
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 1e-105
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 4e-98
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 2e-96
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 3e-90
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 5e-83
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 7e-83
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 4e-63
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 4e-59
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 2e-53
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 3e-51
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 2e-50
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 1e-49
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 6e-45
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 4e-42
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 9e-41
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 2e-39
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 4e-33
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 3e-29
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 1e-22
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 6e-22
PLN02876822 PLN02876, PLN02876, acyl-CoA dehydrogenase 1e-21
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 3e-18
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 9e-17
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 2e-16
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 9e-16
PRK11561538 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; 3e-15
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 4e-13
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 2e-11
pfam08028134 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, 2e-10
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 3e-10
PTZ00457 520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 5e-10
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 2e-09
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 7e-08
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 4e-07
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information 
 Score =  634 bits (1636), Expect = 0.0
 Identities = 253/380 (66%), Positives = 303/380 (79%), Gaps = 4/380 (1%)

Query: 10  DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
            L +E   LR++V  + +  I P+AA ID  N+F   R +W+  G+LGLLGIT PEE+GG
Sbjct: 1   GLDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEF--PRDLWRKMGKLGLLGITAPEEYGG 58

Query: 70  SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
           S MGYL HVI MEE+SR+S SV LS+ AHSNLC+NQI R+ +  QKEKYLP L SGE IG
Sbjct: 59  SGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIG 118

Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
            LAMSEP +GSDV+SM L+AEKKGD YVLNG+K WITNGPDAD  VVYA+T+P      H
Sbjct: 119 ALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDP--SAGAH 176

Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
           GI+ FIVEKG PGFS+ +KL+KLGMRGSNT EL+FE+C+VP EN+LGGENKG YVLMSGL
Sbjct: 177 GITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGL 236

Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
           D ERLV++ GP+GIMQA  D A  Y H+R QFG  IGEFQL+QGK+ADM+  L+ASR+YL
Sbjct: 237 DYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYL 296

Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
           Y+VAKACDRG+++ K+ AGV L AAE A +VAL+AIQ LGGNGYINDYPTGR LRDAKLY
Sbjct: 297 YTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLY 356

Query: 370 EIGAGTSEVRRIVIGRSINA 389
           EIGAGTSE+RR+VIGR +  
Sbjct: 357 EIGAGTSEIRRMVIGRELFK 376

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
KOG0139|consensus398 100.0
KOG0141|consensus421 100.0
KOG0140|consensus408 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
KOG0138|consensus432 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
KOG0137|consensus 634 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
KOG1469|consensus392 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
KOG0135|consensus 661 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.95
KOG0136|consensus 670 99.93
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.92
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.78
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.68
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.65
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.59
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.59
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 99.03
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 96.78
PTZ00457520 acyl-CoA dehydrogenase; Provisional 89.12
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 88.1
>KOG0139|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.2e-80  Score=537.73  Aligned_cols=365  Identities=41%  Similarity=0.675  Sum_probs=355.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHh
Q psy12318          7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSR   86 (392)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~   86 (392)
                      +.-.|+++++.+.+.+|+|.++.+.|.+++.|++..+|.  .+++.+.+.||+++.+|++|||.|.++.....++|+|++
T Consensus        33 pl~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk  110 (398)
T KOG0139|consen   33 PLQILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISK  110 (398)
T ss_pred             chhhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhc
Confidence            345799999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeee
Q psy12318         87 SSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWIT  166 (392)
Q Consensus        87 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs  166 (392)
                      .|+|++.++.+|+++...+|..||+++||++|+|.+. |+.+++||+|||++|||.....|+|+++++.|+|||+|+|||
T Consensus       111 ~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~-~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWIt  189 (398)
T KOG0139|consen  111 VDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT-GDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWIT  189 (398)
T ss_pred             cCccceeEEEecccccchHHHHhCcHHHHhhhcchhh-ccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeec
Confidence            9999999999999999999999999999998877765 888999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHH
Q psy12318        167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM  246 (392)
Q Consensus       167 ~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~  246 (392)
                      |+.+|++++|++.+++..  +.+++++|+||++.||+++..+.+++|||++.++.++|+||+||.+++||+.++|+.|..
T Consensus       190 N~~~A~~~lVfan~d~~~--~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm  267 (398)
T KOG0139|consen  190 NAGEADWFLVFANADPSK--GYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAI  267 (398)
T ss_pred             CCcccceEEEEEecChhh--ccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHH
Confidence            999999999999987665  889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHH
Q psy12318        247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKEC  326 (392)
Q Consensus       247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (392)
                      ..++.+|+.+++..+|+++.|+|.++.|+++|.+||++|.++|.+|++||++..++|++|.++|++++.-+.+.|...++
T Consensus       268 ~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keA  347 (398)
T KOG0139|consen  268 EVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEA  347 (398)
T ss_pred             HhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChH
Q psy12318        327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTS  376 (392)
Q Consensus       327 ~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~  376 (392)
                      +|+|+++++.+..+.+.|+|++||.||+++.|.+|+|||++...|++|++
T Consensus       348 AMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGts  397 (398)
T KOG0139|consen  348 AMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTS  397 (398)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCC
Confidence            99999999999999999999999999999999999999999999999985

>KOG0141|consensus Back     alignment and domain information
>KOG0140|consensus Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>KOG0138|consensus Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>KOG0137|consensus Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>KOG1469|consensus Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0135|consensus Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>KOG0136|consensus Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 1e-153
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 1e-79
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 1e-78
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 2e-70
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 5e-68
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 5e-65
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 1e-64
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 4e-64
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 6e-63
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 2e-62
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 2e-62
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 3e-62
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 5e-62
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 3e-61
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 5e-61
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 6e-58
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 2e-56
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 1e-52
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 1e-52
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 3e-52
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 4e-52
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-49
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 2e-49
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 2e-49
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 3e-46
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 3e-46
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-45
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 3e-44
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 2e-42
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 2e-42
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 2e-42
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 8e-40
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 5e-38
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 5e-37
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 6e-37
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 7e-24
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 2e-22
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 1e-21
3djl_A541 Crystal Structure Of Alkylation Response Protein E. 4e-16
3mxl_A395 Crystal Structure Of Nitrososynthase From Micromono 7e-16
3m9v_A439 X-Ray Structure Of A Kijd3 In Complex With Dtdp Len 2e-15
3d9d_A438 Nitroalkane Oxidase: Mutant D402n Crystallized With 4e-14
2reh_A439 Mechanistic And Structural Analyses Of The Roles Of 4e-14
2c0u_A439 Crystal Structure Of A Covalent Complex Of Nitroalk 4e-14
3d9g_A438 Nitroalkane Oxidase: Wild Type Crystallized In A Tr 4e-14
2zaf_A439 Mechanistic And Structural Analyses Of The Roles Of 5e-14
2c12_A439 Crystal Structure Of Nitroalkane Oxidase In Complex 5e-14
3d9f_A438 Nitroalkane Oxidase: Active Site Mutant S276a Cryst 6e-14
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 2e-13
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 1e-09
4doy_A437 Crystal Structure Of Dibenzothiophene Desulfurizati 4e-08
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 8e-08
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  538 bits (1385), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 249/388 (64%), Positives = 311/388 (80%)
Query: 4   IDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
           +DD I  L+EEQ +LR+T+A + + H+ P A +ID +N+FK+LR+ WK  G LG+LGIT 
Sbjct: 6   VDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITA 65
Query: 64  PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
           P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLC+NQ+ R+  + QKEKYLP L 
Sbjct: 66  PVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLI 125
Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
           SGE IG LAMSEP +GSDV+SM LKAEKKG+ Y+LNGNKFWITNGPDAD+ +VYA+T+  
Sbjct: 126 SGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLA 185
Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
           A     GI+ FIVEKG PGFS  KKL+KLGMRGSNT ELIFE+C++PA N+LG ENKG Y
Sbjct: 186 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVY 245
Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
           VLMSGLDLERLV++ GP+G+MQA  D    Y+H R  FG +IG FQLMQGK+ADM+  L 
Sbjct: 246 VLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLM 305
Query: 304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
           A R Y+Y+VAKACD G   +K+CAGV L +AE A +VAL+ IQC GGNGYIND+P GR+L
Sbjct: 306 ACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFL 365
Query: 364 RDAKLYEIGAGTSEVRRIVIGRSINAEY 391
           RDAKLYEIGAGTSEVRR+VIGR+ NA++
Sbjct: 366 RDAKLYEIGAGTSEVRRLVIGRAFNADF 393
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541 Back     alignment and structure
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora Carbonacea Var. Africana Length = 395 Back     alignment and structure
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439 Back     alignment and structure
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With 1-Nitrohexane Length = 438 Back     alignment and structure
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane Oxidase Trapped During Substrate Turnover Length = 439 Back     alignment and structure
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped State Forming A Cyanoadduct With Fad Length = 438 Back     alignment and structure
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With Spermine, A Competitive Inhibitor Length = 439 Back     alignment and structure
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized With 1- Nitrohexane Length = 438 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 Back     alignment and structure
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 0.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 0.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 0.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 0.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 0.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 1e-179
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-172
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 1e-171
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 1e-171
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-170
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-169
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-168
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-168
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-168
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-167
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 1e-166
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 1e-165
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-164
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 1e-154
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 1e-153
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-152
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 1e-150
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 1e-149
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-142
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 1e-140
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-136
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-135
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-134
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-127
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 8e-76
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 2e-68
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 9e-59
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 1e-58
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 5e-53
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-41
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 1e-38
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 3e-34
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 6e-29
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 4e-27
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
 Score =  684 bits (1768), Expect = 0.0
 Identities = 249/391 (63%), Positives = 311/391 (79%)

Query: 2   YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
             +DD I  L+EEQ +LR+T+A + + H+ P A +ID +N+FK+LR+ WK  G LG+LGI
Sbjct: 4   LPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGI 63

Query: 62  TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
           T P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLC+NQ+ R+  + QKEKYLP 
Sbjct: 64  TAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPK 123

Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
           L SGE IG LAMSEP +GSDV+SM LKAEKKG+ Y+LNGNKFWITNGPDAD+ +VYA+T+
Sbjct: 124 LISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTD 183

Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241
             A     GI+ FIVEKG PGFS  KKL+KLGMRGSNT ELIFE+C++PA N+LG ENKG
Sbjct: 184 LAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKG 243

Query: 242 AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVA 301
            YVLMSGLDLERLV++ GP+G+MQA  D    Y+H R  FG +IG FQLMQGK+ADM+  
Sbjct: 244 VYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTR 303

Query: 302 LSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361
           L A R Y+Y+VAKACD G   +K+CAGV L +AE A +VAL+ IQC GGNGYIND+P GR
Sbjct: 304 LMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGR 363

Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
           +LRDAKLYEIGAGTSEVRR+VIGR+ NA++ 
Sbjct: 364 FLRDAKLYEIGAGTSEVRRLVIGRAFNADFH 394
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.96
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 95.04
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
Probab=100.00  E-value=6.8e-72  Score=533.18  Aligned_cols=378  Identities=38%  Similarity=0.609  Sum_probs=361.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHh
Q psy12318          7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSR   86 (392)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~   86 (392)
                      |+|.++++++++++.+++|+++.+.+...+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+...+++++++
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~   78 (379)
T 1ukw_A            1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAY   78 (379)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999999998888888889999  999999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeee
Q psy12318         87 SSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWIT  166 (392)
Q Consensus        87 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs  166 (392)
                      +|+++++.+..|. ++...|..+|+++|+++|+|++.+|+.++|+++|||++|||...+.|+++++++||+|||+|.|+|
T Consensus        79 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s  157 (379)
T 1ukw_A           79 ACMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWIS  157 (379)
T ss_dssp             HCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEeccc
Confidence            9999998888885 778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHH
Q psy12318        167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM  246 (392)
Q Consensus       167 ~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~  246 (392)
                      |+.+||+++|.++++++.  +..++++|+||.+.|||++.++|+++|++++++++|.||||+||++++++.++.|+....
T Consensus       158 ~~~~Ad~~~v~a~~~~~~--~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  235 (379)
T 1ukw_A          158 NGGEAEWVVVFATVNPEL--RHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAM  235 (379)
T ss_dssp             TTTTEEEEEEEEESCGGG--GGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred             CCCcCCEEEEEEEcCCCC--CCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHH
Confidence            999999999999986432  456789999999999999999999999999999999999999999999999999998888


Q ss_pred             HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHH
Q psy12318        247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKEC  326 (392)
Q Consensus       247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (392)
                      ..+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|+++..++++++++++.+++.++.+.+....+
T Consensus       236 ~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~  315 (379)
T 1ukw_A          236 QTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHAS  315 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999877777889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318        327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA  389 (392)
Q Consensus       327 ~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~  389 (392)
                      +++|.++++.+.++++.++|++||.||++++|++|+|||++...+++|++++++..|++.+|+
T Consensus       316 ~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~  378 (379)
T 1ukw_A          316 AIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA  378 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999885
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 2e-77
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 3e-57
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 1e-55
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 2e-55
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 7e-51
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 7e-50
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 7e-48
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 1e-44
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 5e-39
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 1e-37
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 1e-36
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 9e-32
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 8e-31
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 3e-30
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 1e-28
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 7e-28
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 1e-27
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 1e-27
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 2e-27
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 2e-25
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 3e-25
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 4e-23
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 2e-22
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 6e-22
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 8e-22
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  237 bits (605), Expect = 2e-77
 Identities = 148/236 (62%), Positives = 189/236 (80%)

Query: 4   IDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
           +DD I  L+EEQ +LR+T+A + + H+ P A +ID +N+FK+LR+ WK  G LG+LGIT 
Sbjct: 1   VDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITA 60

Query: 64  PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
           P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLC+NQ+ R+  + QKEKYLP L 
Sbjct: 61  PVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLI 120

Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
           SGE IG LAMSEP +GSDV+SM LKAEKKG+ Y+LNGNKFWITNGPDAD+ +VYA+T+  
Sbjct: 121 SGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLA 180

Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239
           A     GI+ FIVEKG PGFS  KKL+KLGMRGSNT ELIFE+C++PA N+LG EN
Sbjct: 181 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 236
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.97
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.96
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.96
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.96
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.96
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.95
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.95
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.94
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.94
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.94
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.94
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.91
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.89
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.88
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 96.81
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.6e-48  Score=338.91  Aligned_cols=227  Identities=38%  Similarity=0.645  Sum_probs=216.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHh
Q psy12318          7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSR   86 (392)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~   86 (392)
                      |+|.||++++++++.+|+|+++++.+.+.+.|+++.+|.  ++|+.|++.||+++.+|++|||.+.++.+...+++++++
T Consensus         1 Mdf~Lteeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~   78 (227)
T d1ukwa2           1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAY   78 (227)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCH--HHHHHHHhhhhhhhccccccCcccccccccccchhhhcc
Confidence            789999999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeee
Q psy12318         87 SSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWIT  166 (392)
Q Consensus        87 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs  166 (392)
                      ++.++++....+. .+...+..+++++||++|++.+.+|+.++|+++|||++|+|...++|+|+++++||+|||+|.|||
T Consensus        79 ~~~~~~~~~~~~~-~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs  157 (227)
T d1ukwa2          79 ACMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWIS  157 (227)
T ss_dssp             HCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             ccccccccccccc-cchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccC
Confidence            9999888877776 777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCC
Q psy12318        167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE  238 (392)
Q Consensus       167 ~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~  238 (392)
                      |+..||+++|.++++++.  +..++++|+||.+.|||++.+.|+++|++++++++|.|+||+||++++||++
T Consensus       158 ~~~~Ad~~~v~a~~~~~~--~~~g~~~f~V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llGeE  227 (227)
T d1ukwa2         158 NGGEAEWVVVFATVNPEL--RHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEE  227 (227)
T ss_dssp             TTTTEEEEEEEEESCGGG--GGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             ccccchhhccccccCCcc--CcCCcEEEEEeCCCCceEeccccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            999999999999986543  5578999999999999999999999999999999999999999999999863
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure