Psyllid ID: psy12338

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mephwngmephwngmqphwngmephwngtephrngtkphwngmqphwngmephwngmephwngmephwngmqphwngmqphwngmephwngmkphwngiephwnei
Flexible Loop (DISEMBL)
MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI
Low Complexity Region (SEG)
MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI
Disordered region (IsUnstruct)
*********************************************HWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGI*******
Disordered Region (DISOPRED)
**********************************************************************************************************
Disordered Region (DISEMBL)
MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI
Disordered Region (DISPRO)
*****NGM*************************NGT*P*WNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q10172	1794	Actin cytoskeleton-regula	yes	N/A	0.943	0.055	0.325	9e-09
Q9SEH4	419	Putrescine N-methyltransf	N/A	N/A	0.811	0.205	0.425	9e-07
O13736	1420	Actin cytoskeleton-regula	no	N/A	0.933	0.069	0.247	2e-06
P11414	467	DNA-directed RNA polymera	no	N/A	0.915	0.207	0.175	2e-05
Q9SEH5	381	Putrescine N-methyltransf	N/A	N/A	0.698	0.194	0.415	0.0002

>sp|Q10172|PAN1_SCHPO Actin cytoskeleton-regulatory complex protein pan1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pan1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 52/126 (41%), Gaps = 26/126 (20%)

Query: 1   MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTE----PHRNGTKPHWNGMQ----PHWN 48
           M P   G++P   G Q    P   GM+P   G +    P R G +P   G Q    P   
Sbjct: 458 MMPQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQRTGLQPQMTGFQQPMVPQRT 517

Query: 49  GMEPHWNG----MEPHWNGMEP---HWNGMQPHWNGMQ----PHWNGME---PHWNGMKP 94
           GM+P   G    M P   GM+P      GMQP   G Q    P   GM+   P   GM+P
Sbjct: 518 GMQPMMPGLQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQP 577

Query: 95  HWNGIE 100
              G++
Sbjct: 578 QMPGMQ 583

Component of the PAN1 actin cytoskeleton-regulatory complex required for the internalization of endosomes during actin-coupled endocytosis. The complex links the site of endocytosis to the cell membrane-associated actin cytoskeleton. Mediates uptake of external molecules and vacuolar degradation of plasma membrane proteins. Plays a role in the proper organization of the cell membrane-associated actin cytoskeleton and promotes its destabilization.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SEH4|PMT4_TOBAC Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 49/108 (45%), Gaps = 22/108 (20%)

Query: 1   MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNG 56
           M  H +G   H NG Q     H NG   H NGT  HRNG   H NG+  H NG   H NG
Sbjct: 21  MNGHQSGTSKHLNGYQNGTSKHQNG---HHNGTSEHRNG---HQNGISEHQNG---HQNG 71

Query: 57  MEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
              H NG   H NG+  H NG   H NG   H NG   H NG     N
Sbjct: 72  TSEHRNG---HQNGISEHQNG---HQNGTSEHQNG---HQNGTSEQQN 110

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|O13736|SLA1_SCHPO Actin cytoskeleton-regulatory complex protein sla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sla1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 6    NGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEP--------HWNGM 57
             G++PH  G+ P   G+ P   G  P   G  P   G+Q    G  P           GM
Sbjct: 1081 TGLQPHMTGVMPQVTGVMPQMTGVVPQMTGVMPQMTGVQVQKTGAMPQQPVNYGYQVAGM 1140

Query: 58   EPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHW------NGMKPHWNGIEPHWN 104
            +P   G+     G++    G+     G+           GM+P   GI P   
Sbjct: 1141 QPQATGIISQPTGIRAQATGIMTQPTGLHTQATGMMQPTGMQPQATGIMPQAT 1193

Component of the PAN1 actin cytoskeleton-regulatory complex required for the internalization of endosomes during actin-coupled endocytosis. The complex links the site of endocytosis to the cell membrane-associated actin cytoskeleton. Mediates uptake of external molecules and vacuolar degradation of plasma membrane proteins. Plays a role in the proper organization of the cell membrane-associated actin cytoskeleton and promotes its destabilization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Cricetulus griseus GN=POLR2A PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/97 (17%), Positives = 39/97 (40%)

Query: 5   WNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGM 64
           +    P ++   P ++   P ++ T P  + T P ++   P ++   P +    P ++  
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409

Query: 65  EPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP 101
            P ++   P ++   P ++   P  +   P   G  P
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 446

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

>sp|Q9SEH5|PMT3_TOBAC Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 8  MEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPH 67
          M  + NG   H NG   H NGT  HRNG   H NG+  H NG   H NG   H NG   H
Sbjct: 21 MNGYQNGTSKHQNG---HQNGTSEHRNG---HQNGISEHQNG---HQNGTSEHQNG---H 68

Query: 68 WNGMQPHWNGMQPHWNGMEPHWNGMKPHW 96
           NG   H NG +    G     N +KP W
Sbjct: 69 QNGTISHDNGNELQLLGSS---NSIKPGW 94

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
449692657	106	PREDICTED: salivary glue protein Sgs-4-l	0.952	0.952	0.396	1e-21
261420551	209	hypothetical protein GYMC61_3196 [Geobac	1.0	0.507	0.264	2e-19
343477522	191	Procyclin-like gene [Trypanosoma congole	0.971	0.539	0.475	2e-19
56387337	163	procyclin Kil1 [Trypanosoma congolense]	0.981	0.638	0.490	2e-18
66359288	1902	DNA-directed RNA polymerase,possible RNA	0.952	0.053	0.313	1e-17
67597591	1895	DNA-directed RNA polymerase II largest c	0.952	0.053	0.313	1e-17
156384910	293	predicted protein [Nematostella vectensi	0.924	0.334	0.273	4e-17
56421643	206	hypothetical protein GK3108 [Geobacillus	0.971	0.5	0.226	7e-17
288561299	3176	adhesin-like protein [Methanobrevibacter	0.915	0.030	0.454	5e-16
156319739	139	hypothetical protein NEMVEDRAFT_v1g47474	0.990	0.755	0.311	5e-16

>gi|449692657|ref|XP_004213121.1| PREDICTED: salivary glue protein Sgs-4-like [Hydra magnipapillata]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 46/101 (45%)

Query: 1   MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
            EP  N  EP  N  +P  N  EP  N TEP  N T+P  N  +P  N  EP  N  EP 
Sbjct: 5   TEPDSNSTEPDSNSTKPDSNSTEPDSNSTEPDSNSTEPDSNSTEPDSNSTEPDSNSTEPD 64

Query: 61  WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP 101
            N  EP  N  +P  N  +P  N  EP  N  +P  N  EP
Sbjct: 65  SNSTEPDSNSTEPDSNSTEPDSNSTEPDSNSTEPDSNSTEP 105

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|261420551|ref|YP_003254233.1| hypothetical protein GYMC61_3196 [Geobacillus sp. Y412MC61] gi|319768220|ref|YP_004133721.1| hypothetical protein [Geobacillus sp. Y412MC52] gi|261377008|gb|ACX79751.1| conserved hypothetical protein [Geobacillus sp. Y412MC61] gi|317113086|gb|ADU95578.1| hypothetical protein GYMC52_3225 [Geobacillus sp. Y412MC52]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 56/106 (52%)

Query: 1   MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
           ++   + +E    G++   +G+E   NG E   +G +   NG++   +G+E   NG+E  
Sbjct: 50  VKERLDRVETRLGGVETRLDGVETRLNGVETRLDGVETRLNGVETRLDGVETRLNGVETR 109

Query: 61  WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI 106
            +G+E   NG++   +G++   NG+E   +G++   NG+E    E+
Sbjct: 110 LDGVETRLNGVETRLDGVETRLNGVETRLDGVETRLNGLETELEEV 155

Source: Geobacillus sp. Y412MC61

Species: Geobacillus sp. Y412MC61

Genus: Geobacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|343477522|emb|CCD11665.1| Procyclin-like gene [Trypanosoma congolense IL3000]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 60/103 (58%)

Query: 1   MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
            EP  +G +P  +G +P  +G EP  +GT+P  NGTKP  NG +P  NG EP  NG EP 
Sbjct: 66  TEPGESGTKPGESGTKPGESGTEPGESGTKPGENGTKPGENGTEPGANGTEPGANGTEPG 125

Query: 61  WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHW 103
            NG EP  NG +P  NG +P  NG EP  NG +P  NG EP  
Sbjct: 126 ANGTEPGANGTEPGANGTEPGANGTEPGANGTEPGENGTEPAA 168

Source: Trypanosoma congolense IL3000

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|56387337|gb|AAV86082.1| procyclin Kil1 [Trypanosoma congolense]

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 58/104 (55%)

Query: 3   PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
           P     EP  NG +P  NG EP  NGTEP  NGT+P  NG +P  NG EP  NG EP  N
Sbjct: 40  PLAKADEPGENGTEPGENGTEPGENGTEPGENGTEPGENGTEPGENGTEPGENGTEPGEN 99

Query: 63  GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI 106
           G EP  NG +P  NG +P  NG EP  NG +P  NG EP    +
Sbjct: 100 GTEPGENGTEPGENGTEPGENGTEPGENGTEPGENGTEPAAGSV 143

Source: Trypanosoma congolense

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat at gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus [Cryptosporidium parvum Iowa II]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 61/102 (59%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            PH++   PH++   PH++   PH++ T PH + T PH++   PH++   PH++   PH++
Sbjct: 1687 PHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1746

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               PH++   PH++   PH++   PH++   PH++   PH++
Sbjct: 1747 PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1788

Source: Cryptosporidium parvum Iowa II

Species: Cryptosporidium parvum

Genus: Cryptosporidium

Family: Cryptosporidiidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis TU502] gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidium hominis]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 61/102 (59%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            PH++   PH++   PH++   PH++ T PH + T PH++   PH++   PH++   PH++
Sbjct: 1680 PHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1739

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               PH++   PH++   PH++   PH++   PH++   PH++
Sbjct: 1740 PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1781

Source: Cryptosporidium hominis TU502

Species: Cryptosporidium hominis

Genus: Cryptosporidium

Family: Cryptosporidiidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|156384910|ref|XP_001633375.1| predicted protein [Nematostella vectensis] gi|156220444|gb|EDO41312.1| predicted protein [Nematostella vectensis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%)

Query: 1   MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
           ++P  N ++P  N + P  N ++P  N  +P  N   P  N + P  N ++P  N ++P 
Sbjct: 159 LDPCCNKLDPFCNRLDPICNKLDPFCNKRDPFCNKLDPICNKLDPICNKLDPICNILDPF 218

Query: 61  WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI 106
            N ++   N + P  N + P  N ++P  N + P  N ++P  N++
Sbjct: 219 CNKLDTICNRLDPICNRLDPICNRLDPICNRLDPICNRLDPFCNKL 264

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|56421643|ref|YP_148961.1| hypothetical protein GK3108 [Geobacillus kaustophilus HTA426] gi|56381485|dbj|BAD77393.1| hypothetical protein GK3108 [Geobacillus kaustophilus HTA426]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 54/106 (50%)

Query: 1   MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
           +E     ++   + ++    G+E   +G E   NG +   +G++   +G+E   +G+E  
Sbjct: 47  LEQEMGAVKERLDRVETRLGGVETRLDGVETRLNGVEIRLDGVETRLDGVETRLDGVETR 106

Query: 61  WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI 106
            NG+E   +G++   NG++   +G+E   +G++   +G+E    E+
Sbjct: 107 LNGVETRLDGVETRLNGVETRLDGVETRLDGVETRLDGVENELREV 152

Source: Geobacillus kaustophilus HTA426

Species: Geobacillus kaustophilus

Genus: Geobacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|288561299|ref|YP_003424785.1| adhesin-like protein [Methanobrevibacter ruminantium M1] gi|288544009|gb|ADC47893.1| adhesin-like protein [Methanobrevibacter ruminantium M1]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 49/99 (49%)

Query: 6    NGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGME 65
            NG  P  NG  P  NG  P  NGT P  NGT P  NG  P  NG +P  NG  P  NG +
Sbjct: 2665 NGTSPEGNGTSPGGNGTSPSGNGTSPGGNGTSPSGNGTSPGGNGTDPGGNGTSPSGNGTD 2724

Query: 66   PHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
            P  NG  P  NG  P  NG +P  NG  P  NG +P  N
Sbjct: 2725 PGGNGTSPSGNGTSPGGNGTDPSGNGTSPGGNGTDPGGN 2763

Source: Methanobrevibacter ruminantium M1

Species: Methanobrevibacter ruminantium

Genus: Methanobrevibacter

Family: Methanobacteriaceae

Order: Methanobacteriales

Class: Methanobacteria

Phylum: Euryarchaeota

Superkingdom: Archaea

>gi|156319739|ref|XP_001618155.1| hypothetical protein NEMVEDRAFT_v1g47474 [Nematostella vectensis] gi|156197736|gb|EDO26055.1| predicted protein [Nematostella vectensis]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 1   MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHW-NGMEP 59
           ++P  N +EP  N + P  N + P  N  +P  N   P  N + P  N ++P + N + P
Sbjct: 2   LDPFCNKLEPICNRLDPICNRLYPFCNVRDPICNRLDPICNRLDPCCNKIDPQFCNKLNP 61

Query: 60  HWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNE 105
             N +EP  N ++P  N + P  N +EP  N + P  N I+P   +
Sbjct: 62  FCNKLEPICNKLEPICNKLDPICNKLEPICNRLDPICNRIDPFCKK 107

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
UNIPROTKB|F1S9W3	852	CHERP "Uncharacterized protein	0.867	0.107	0.342	9.4e-08
UNIPROTKB|A8E648	916	CHERP "CHERP protein" [Bos tau	0.867	0.100	0.342	1e-07
UNIPROTKB|J9NZK1	916	CHERP "Uncharacterized protein	0.867	0.100	0.342	1e-07
UNIPROTKB|E2RHU5	940	CHERP "Uncharacterized protein	0.867	0.097	0.342	1.1e-07
MGI|MGI:106417	936	Cherp "calcium homeostasis end	0.867	0.098	0.333	3.6e-07
UNIPROTKB|Q9NX53	252	EXD3 "Probable exonuclease mut	0.726	0.305	0.302	4.9e-07
POMBASE|SPAC25G10.09c	1794	pan1 "actin cortical patch com	0.849	0.050	0.370	7.7e-07
RGD|1305279	946	Cherp "calcium homeostasis end	0.877	0.098	0.327	1.2e-06
UNIPROTKB|Q8IWX8	916	CHERP "Calcium homeostasis end	0.867	0.100	0.333	1.5e-06
UNIPROTKB|J3QK89	927	CHERP "Calcium homeostasis end	0.867	0.099	0.333	1.6e-06

UNIPROTKB|F1S9W3 CHERP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 39/114 (34%), Positives = 49/114 (42%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   418 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 475

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGM--QPHWNG--MEPHWNGMKP-HWNG-IEPH 102
              +  WN   +P+WN   +  WN    QP W G   EP +   +P H+ G   PH
Sbjct:   476 RDAPWNSQPDPNWNSQFEGPWNNQHEQPPWGGGQREPPFRMQRPPHFRGPFPPH 529

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|A8E648 CHERP "CHERP protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 39/114 (34%), Positives = 49/114 (42%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   418 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 475

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGM--QPHWNG--MEPHWNGMKP-HWNG-IEPH 102
              +  WN   +P+WN   +  WN    QP W G   EP +   +P H+ G   PH
Sbjct:   476 RDAPWNSQPDPNWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPH 529

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J9NZK1 CHERP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 39/114 (34%), Positives = 49/114 (42%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   418 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 475

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGM--QPHWNG--MEPHWNGMKP-HWNG-IEPH 102
              +  WN   +P+WN   +  WN    QP W G   EP +   +P H+ G   PH
Sbjct:   476 RDAPWNSQPDPNWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPH 529

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RHU5 CHERP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 39/114 (34%), Positives = 49/114 (42%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   418 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 475

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGM--QPHWNG--MEPHWNGMKP-HWNG-IEPH 102
              +  WN   +P+WN   +  WN    QP W G   EP +   +P H+ G   PH
Sbjct:   476 RDAPWNSQPDPNWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPH 529

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:106417 Cherp "calcium homeostasis endoplasmic reticulum protein" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 38/114 (33%), Positives = 48/114 (42%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   427 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 484

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGMQ--PHWNGM--EPHWNGMKP-HWNG-IEPH 102
              +  WN   +P+WN   +  WN     P W G   EP +   +P H+ G   PH
Sbjct:   485 RDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPH 538

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=ISO

UNIPROTKB|Q9NX53 EXD3 "Probable exonuclease mut-7 homolog, isoform 5" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 26/86 (30%), Positives = 34/86 (39%)

Query:    29 TEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN--GMEPHWNGMQPHWNGMQPHWNGME 86
             T P +N     WN   P WN +   WN   P WN  G  P  N +   WN +   WN + 
Sbjct:    89 TAPRQNRHGARWNTNGPPWNSLGAPWNTNGPPWNRHGAPPQ-NSLDAPWNSLGAPWNSLG 147

Query:    87 PHWNGM------KPHWNGIEPHWNEI 106
               WN +      +P  N     WN +
Sbjct:   148 APWNSLVLLEQTQPPQNRHSTPWNSL 173

GO:0005515 "protein binding" evidence=IPI

POMBASE|SPAC25G10.09c pan1 "actin cortical patch component, with EF hand and WH2 motif Panl (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 129 (50.5 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 43/116 (37%), Positives = 50/116 (43%)

Query:     1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNGTKPHW---NGMQPHWNGME-- 51
             M P   GM+P   GMQ    P   GM+P      P R G +P      GMQP   GM+  
Sbjct:   645 MMPQRTGMQPQMPGMQQPMAPQRTGMQP----MAPQRTGMQPMMPQRTGMQPQMPGMQQP 700

Query:    52 --PHWNGMEPHW---NGMEPHWNGMQ----PHWNGMQPHWNGMEPHWNGMKPHWNG 98
               P   GM+P      GM+P   GMQ    P   GMQP    M P   GM+P   G
Sbjct:   701 MAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQP----MAPQRTGMQPQMTG 752

GO:0000147 "actin cortical patch assembly" evidence=ISO

GO:0003779 "actin binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006897 "endocytosis" evidence=ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0030479 "actin cortical patch" evidence=ISO

RGD|1305279 Cherp "calcium homeostasis endoplasmic reticulum protein" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 37/113 (32%), Positives = 48/113 (42%)

Query:     9 EPHW-NGMQP--HWNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM- 57
             +P W +  QP   W   +P      PH  G  PH   WN    GM     G +P WNG  
Sbjct:   437 KPPWFDQPQPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQR 495

Query:    58 EPHWNGM-EPHWNGM-QPHWNGMQ--PHWNGM--EPHWNGMKP-HWNG-IEPH 102
             +  WN   +P+WN   +  WN     P W G   EP +   +P H+ G   PH
Sbjct:   496 DAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPH 548

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0033017 "sarcoplasmic reticulum membrane" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=ISO

UNIPROTKB|Q8IWX8 CHERP "Calcium homeostasis endoplasmic reticulum protein" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 38/114 (33%), Positives = 47/114 (41%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   418 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 475

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGM--QPHWNG--MEPHWNGMKP-HWNG-IEPH 102
              +  WN   +  WN   +  WN    QP W G   EP +   +P H+ G   PH
Sbjct:   476 RDAPWNNQPDAAWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPH 529

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IMP

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS

GO:0007399 "nervous system development" evidence=TAS

GO:0006874 "cellular calcium ion homeostasis" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

UNIPROTKB|J3QK89 CHERP "Calcium homeostasis endoplasmic reticulum protein" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 38/114 (33%), Positives = 47/114 (41%)

Query:     9 EPHWNGMQPH----WNGMEPHWNGTEPHRNGTKPH---WN----GMQPHWNGMEPHWNGM 57
             +P W   QPH    W   +P      PH  G  PH   WN    GM     G +P WNG 
Sbjct:   429 KPPWFD-QPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRG-DPGWNGQ 486

Query:    58 -EPHWNGM-EPHWNGM-QPHWNGM--QPHWNG--MEPHWNGMKP-HWNG-IEPH 102
              +  WN   +  WN   +  WN    QP W G   EP +   +P H+ G   PH
Sbjct:   487 RDAPWNNQPDAAWNSQFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPH 540

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-08
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-08
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-08
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-07

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 53.2 bits (127), Expect = 8e-10
 Identities = 17/102 (16%), Positives = 47/102 (46%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1617 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS 1676

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               P ++   P ++   P+++   P ++   P ++   P ++
Sbjct: 1677 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 51.2 bits (122), Expect = 4e-09
 Identities = 17/103 (16%), Positives = 46/103 (44%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1582 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1641

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNE 105
               P ++   P ++   P ++   P ++   P ++   P ++ 
Sbjct: 1642 PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 51.2 bits (122), Expect = 5e-09
 Identities = 17/102 (16%), Positives = 47/102 (46%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1610 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYS 1669

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               P ++   P ++   P ++   P+++   P ++   P ++
Sbjct: 1670 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYS 1711

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 16/103 (15%), Positives = 45/103 (43%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1624 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1683

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNE 105
               P ++   P+++   P ++   P ++   P ++  +     
Sbjct: 1684 PTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKH 1726

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 17/102 (16%), Positives = 47/102 (46%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1603 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1662

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               P ++   P ++   P ++   P ++   P+++   P ++
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS 1704

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 17/102 (16%), Positives = 47/102 (46%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1596 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1655

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               P ++   P ++   P ++   P ++   P ++   P+++
Sbjct: 1656 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS 1697

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 17/102 (16%), Positives = 46/102 (45%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1568 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1627

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               P ++   P ++   P ++   P ++   P ++   P ++
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYS 1669

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 17/103 (16%), Positives = 45/103 (43%)

Query: 1    MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
              P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P 
Sbjct: 1587 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1646

Query: 61   WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHW 103
            ++   P ++   P ++   P ++   P ++   P ++   P +
Sbjct: 1647 YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 14/92 (15%), Positives = 40/92 (43%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P+++
Sbjct: 1638 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS 1697

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKP 94
               P ++   P ++   P ++  +      + 
Sbjct: 1698 PTSPSYSPTSPGYSPGSPAYSPKQDEQKHNEN 1729

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 17/101 (16%), Positives = 45/101 (44%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHW 103
               P ++   P ++   P ++   P ++   P ++   P +
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 46/102 (45%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1620

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
               P ++   P ++   P ++   P ++   P ++   P ++
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1662

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 17/101 (16%), Positives = 45/101 (44%)

Query: 3    PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWN 62
            P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P ++
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705

Query: 63   GMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHW 103
               P ++   P ++   P ++   P ++   P ++   P +
Sbjct: 1706 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.8 bits (113), Expect = 7e-08
 Identities = 17/100 (17%), Positives = 44/100 (44%)

Query: 2    EPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHW 61
             P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P +
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711

Query: 62   NGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP 101
            +   P ++   P ++   P ++   P ++   P ++   P
Sbjct: 1712 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 16/94 (17%), Positives = 41/94 (43%)

Query: 1    MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
              P ++   P ++   P ++   P ++ T P  + T P ++   P ++   P ++   P 
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1717

Query: 61   WNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKP 94
            ++   P ++   P ++   P ++   P ++   P
Sbjct: 1718 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00