Psyllid ID: psy12370

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MSTLLNAQRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEcccccccccccccccccccccEEEEcccccccEEEEcccccccccccccEEEEEEEccccEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEccccccEEEEcccccccccccEEEEEEEEEccccEEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mstllnaqrcsangfllvkpsllgtnfgintghqlselpcafmfnstgghrngtftspnfpglyprdtechyffygrnDERIKLVFESFDVEGVPP
Flexible Loop (DISEMBL)
mstllnaqrcsaNGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP
Low Complexity Region (SEG)
MSTLLNAQRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP
Disordered region (IsUnstruct)
*******QRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV*****
Disordered Region (DISOPRED)
**T****QRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG***
Disordered Region (DISEMBL)
MSTLLNAQRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP
Disordered Region (DISPRO)
*STLLNAQRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTLLNAQRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q93212	594	Suppressor of lurcher pro	yes	N/A	0.552	0.089	0.537	1e-10
Q9WVM6	1012	Tolloid-like protein 2 OS	yes	N/A	0.593	0.056	0.344	0.0002
P25723	1067	Dorsal-ventral patterning	no	N/A	0.593	0.053	0.360	0.0002
Q8BQH6	427	CUB domain-containing pro	no	N/A	0.427	0.096	0.439	0.0003
P98063	991	Bone morphogenetic protei	no	N/A	0.614	0.059	0.365	0.0003
Q9Y6L7	1015	Tolloid-like protein 2 OS	yes	N/A	0.593	0.056	0.360	0.0003
P13497	986	Bone morphogenetic protei	no	N/A	0.614	0.059	0.365	0.0004
Q8JI28	1007	Tolloid-like protein 1 OS	N/A	N/A	0.614	0.058	0.333	0.0004
Q5VXM1	449	CUB domain-containing pro	no	N/A	0.437	0.093	0.428	0.0005
Q91ZV3	769	Discoidin, CUB and LCCL d	no	N/A	0.458	0.057	0.431	0.0006

>sp|Q93212|SOL1_CAEEL Suppressor of lurcher protein 1 OS=Caenorhabditis elegans GN=sol-1 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 40  CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
           C F FNS+  H NG   S N+PGLYPR+  C Y F+GRND+ + + FE FD+EG
Sbjct: 435 CRFSFNSSE-HTNGKLWSANYPGLYPRNLYCEYIFHGRNDQVVHIHFEYFDIEG 487

Accessory protein required for glutamate-gated currents. May participate in the gating of non-NMDA (N-methyl-D-aspartate) ionotropic glutamate receptors such as glr-1.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9WVM6|TLL2_MOUSE Tolloid-like protein 2 OS=Mus musculus GN=Tll2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 32  GHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
           GH   E  CA+  +S      GT  SPN+P  YP   EC +        R+K+ F  F++
Sbjct: 765 GHDCKEAGCAYKISSA----EGTLMSPNWPDKYPSRKECTWNISSTAGHRVKITFSEFEI 820

Query: 92  E 92
           E
Sbjct: 821 E 821

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P25723|TLD_DROME Dorsal-ventral patterning protein tolloid OS=Drosophila melanogaster GN=tld PE=2 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 32  GHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
           GH  +E  C F   ++     G   SPN+P  YPR+  C++ F      RI+L F  F+V
Sbjct: 789 GHNCTETRCKFEITTS----YGVLQSPNYPEDYPRNIYCYWHFQTVLGHRIQLTFHDFEV 844

Query: 92  E 92
           E
Sbjct: 845 E 845

Required for normal dorsal development. TLD may interact physically with DPP-C protein.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8BQH6|CDCP2_MOUSE CUB domain-containing protein 2 OS=Mus musculus GN=Cdcp2 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          +G F+SPNFP LYP +TEC +         + L F +FD+E
Sbjct: 38 SGNFSSPNFPSLYPYNTECSWLIVVAEGSSVLLTFHAFDLE 78

Mus musculus (taxid: 10090)

>sp|P98063|BMP1_MOUSE Bone morphogenetic protein 1 OS=Mus musculus GN=Bmp1 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 33  HQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
           H   E  C     ST    +GT TSPN+P  YP   EC +        R+KL F   D+E
Sbjct: 745 HDCKEAGCEHKVTST----SGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFVEMDIE 800

Query: 93  GVP 95
             P
Sbjct: 801 SQP 803

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|Q9Y6L7|TLL2_HUMAN Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 32  GHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
           GH   E  CA   +S      GT  SPN+P  YP   EC +        R+KL F  F++
Sbjct: 768 GHDCKEAGCAHKISSV----EGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEFEI 823

Query: 92  E 92
           E
Sbjct: 824 E 824

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P13497|BMP1_HUMAN Bone morphogenetic protein 1 OS=Homo sapiens GN=BMP1 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 33  HQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
           H   E  C     ST    +GT TSPN+P  YP   EC +        R+KL F   D+E
Sbjct: 740 HDCKEAGCDHKVTST----SGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIE 795

Query: 93  GVP 95
             P
Sbjct: 796 SQP 798

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|Q8JI28|TLL1_XENLA Tolloid-like protein 1 OS=Xenopus laevis GN=tll1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 30  NTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESF 89
           +  H   E  C    +S+    NG  TSPN+P  YP   EC +        R+KL F  F
Sbjct: 759 DNKHDCKEAECEHRIHSS----NGVITSPNWPDKYPSRKECTWEISATPGHRVKLSFSEF 814

Query: 90  DVE 92
           ++E
Sbjct: 815 EIE 817

Protease which processes procollagen C-propeptides, such as chordin. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q5VXM1|CDCP2_HUMAN CUB domain-containing protein 2 OS=Homo sapiens GN=CDCP2 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 52  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
           +G  TSP +P  YP   ECH+         +KLVF  F VEG
Sbjct: 153 SGVLTSPEYPNNYPNSMECHWVIRAAGPAHVKLVFVDFQVEG 194

Homo sapiens (taxid: 9606)

>sp|Q91ZV3|DCBD2_MOUSE Discoidin, CUB and LCCL domain-containing protein 2 OS=Mus musculus GN=Dcbld2 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 49  GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
           G  +GT TS N+P  YP  T C +    R  ERI++ F  FD+E
Sbjct: 75  GPESGTLTSINYPHTYPNSTVCEWEIRVRTGERIRIKFGDFDIE 118

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
328783696	635	PREDICTED: cubilin-like [Apis mellifera]	0.729	0.110	0.690	1e-19
242008984	328	conserved hypothetical protein [Pediculu	0.729	0.213	0.647	3e-19
357621099	312	hypothetical protein KGM_05635 [Danaus p	0.729	0.224	0.661	4e-19
270000971	354	hypothetical protein TcasGA2_TC011248 [T	0.729	0.197	0.661	4e-19
350403715	624	PREDICTED: cubilin-like [Bombus impatien	0.729	0.112	0.647	5e-19
340725396	650	PREDICTED: cubilin-like [Bombus terrestr	0.729	0.107	0.647	6e-19
322780192	191	hypothetical protein SINV_01179 [Solenop	0.739	0.371	0.638	6e-19
383860913	312	PREDICTED: suppressor of lurcher protein	0.729	0.224	0.661	7e-19
443694215	332	hypothetical protein CAPTEDRAFT_226257 [	0.864	0.25	0.546	8e-19
357606909	684	hypothetical protein KGM_16882 [Danaus p	0.729	0.102	0.605	5e-18

>gi|328783696|ref|XP_001122665.2| PREDICTED: cubilin-like [Apis mellifera]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           NFGI TG Q ++ PCAF++NS    RNGTFTSPN+PGLYPRDTECHYFF G+ +ERI L 
Sbjct: 452 NFGITTGRQEAQYPCAFVYNSNET-RNGTFTSPNYPGLYPRDTECHYFFNGQPNERIHLH 510

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 511 FHFFDVEGVMP 521

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008984|ref|XP_002425273.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509038|gb|EEB12535.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
            FG+  GHQL+E PCAF+FNS    RNGTF+SPNFPG YPRDTECH+FF G   E++ L 
Sbjct: 145 KFGMTRGHQLTEYPCAFVFNSNES-RNGTFSSPNFPGFYPRDTECHFFFQGSQKEKVNLH 203

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 204 FSYFDVEGVLP 214

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621099|gb|EHJ73056.1| hypothetical protein KGM_05635 [Danaus plexippus]

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           NFGI TG QL E PCAF++NS+  H NGTF SPN PGLYPRDTEC YFF+G   E++ L 
Sbjct: 140 NFGITTGRQLKEFPCAFVYNSSESH-NGTFASPNSPGLYPRDTECSYFFHGGQSEKVHLH 198

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 199 FTHFDVEGVLP 209

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270000971|gb|EEZ97418.1| hypothetical protein TcasGA2_TC011248 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           NFGI TG QLS+ PCAF+FNS    +NG F SPN+PGLYPRDTECHYFF+G   E++ L 
Sbjct: 138 NFGIKTGTQLSDYPCAFVFNSNES-KNGFFYSPNYPGLYPRDTECHYFFHGNIKEKVHLH 196

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 197 FNYFDVEGVLP 207

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403715|ref|XP_003486882.1| PREDICTED: cubilin-like [Bombus impatiens]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           NFG+ TG Q ++ PCAF++NS    RNGTF SPN+PGLYPRDTECHYFF G+ +ER+ L 
Sbjct: 454 NFGVTTGRQEAQYPCAFVYNSNET-RNGTFASPNYPGLYPRDTECHYFFNGQLNERVHLH 512

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 513 FHFFDVEGVSP 523

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725396|ref|XP_003401056.1| PREDICTED: cubilin-like [Bombus terrestris]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           NFG+ TG Q ++ PCAF++NS    RNGTF SPN+PGLYPRDTECHYFF G+ +ER+ L 
Sbjct: 454 NFGVTTGRQEAQYPCAFVYNSNET-RNGTFASPNYPGLYPRDTECHYFFNGQLNERVHLH 512

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 513 FHFFDVEGVSP 523

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780192|gb|EFZ09831.1| hypothetical protein SINV_01179 [Solenopsis invicta]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 25 TNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKL 84
          ++FGI TG Q  + PCAF+FNS    RNGTF SPN+PGLYPR TEC+YFFYG+++ER+ L
Sbjct: 19 SDFGITTGRQEGQYPCAFVFNSNET-RNGTFASPNYPGLYPRSTECYYFFYGQSNERVHL 77

Query: 85 VFESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 78 HFHFFDVEGVLP 89

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860913|ref|XP_003705932.1| PREDICTED: suppressor of lurcher protein 1-like [Megachile rotundata]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           NFGI TG Q +  PCAF++NS+   RNGTF SPN+PGLYPRDTECHYFF G+ +ER+ L 
Sbjct: 155 NFGITTGRQEATYPCAFVYNSSET-RNGTFASPNYPGLYPRDTECHYFFNGQPNERVHLH 213

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 214 FHFFDVEGVMP 224

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443694215|gb|ELT95408.1| hypothetical protein CAPTEDRAFT_226257 [Capitella teleta]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 3/86 (3%)

Query: 11  SANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTEC 70
           +A GF+     +  TNFG+  G Q  ++ C F F+S     NGTFTSPNFPGLYPR+TEC
Sbjct: 133 AATGFMATYKFV--TNFGVKAGEQADDMVCGFAFHSKDAP-NGTFTSPNFPGLYPRNTEC 189

Query: 71  HYFFYGRNDERIKLVFESFDVEGVPP 96
           HY FYG+ +ERI + F  FDVEG+PP
Sbjct: 190 HYLFYGQENERIYITFPYFDVEGIPP 215

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|357606909|gb|EHJ65280.1| hypothetical protein KGM_16882 [Danaus plexippus]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 26  NFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLV 85
           ++ I TG QL E PCAF++N T   R G  TSPN+PGLYPRDTEC+YFF+ R +ER+ L 
Sbjct: 510 DYAIATGKQLLEYPCAFVYNITD-RRKGVMTSPNYPGLYPRDTECNYFFHARKNERVHLK 568

Query: 86  FESFDVEGVPP 96
           F  FDVEGV P
Sbjct: 569 FSHFDVEGVVP 579

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
WB|WBGene00004944	594	sol-1 [Caenorhabditis elegans	0.552	0.089	0.537	4.4e-11
FB|FBgn0261262	1146	CG42613 [Drosophila melanogast	0.625	0.052	0.344	2e-06
WB|WBGene00002977	906	lev-10 [Caenorhabditis elegans	0.666	0.070	0.4	2.5e-06
MGI|MGI:3045328	427	Cdcp2 "CUB domain containing p	0.427	0.096	0.439	6e-05
UNIPROTKB|Q5VXM1	449	CDCP2 "CUB domain-containing p	0.427	0.091	0.439	0.00011
FB|FBgn0004885	1464	tok "tolkin" [Drosophila melan	0.593	0.038	0.377	0.00013
RGD|1559756	957	Tll2 "tolloid-like 2" [Rattus	0.593	0.059	0.360	0.00013
UNIPROTKB|F1MKV7	3620	CUBN "Uncharacterized protein"	0.427	0.011	0.487	0.00015
UNIPROTKB|F1M999	989	Bmp1 "Protein Bmp1" [Rattus no	0.614	0.059	0.365	0.00018
UNIPROTKB|F1M798	990	Bmp1 "Protein Bmp1" [Rattus no	0.614	0.059	0.365	0.00018

WB|WBGene00004944 sol-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 163 (62.4 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query:    40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
             C F FNS+  H NG   S N+PGLYPR+  C Y F+GRND+ + + FE FD+EG
Sbjct:   435 CRFSFNSSE-HTNGKLWSANYPGLYPRNLYCEYIFHGRNDQVVHIHFEYFDIEG 487

GO:0019915 "lipid storage" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0051968 "positive regulation of synaptic transmission, glutamatergic" evidence=IGI;IDA;IMP

GO:0040012 "regulation of locomotion" evidence=IGI

GO:0016247 "channel regulator activity" evidence=IDA;IMP

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0001966 "thigmotaxis" evidence=IMP

GO:0032589 "neuron projection membrane" evidence=IDA

GO:0008328 "ionotropic glutamate receptor complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0261262 CG42613 [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query:    32 GHQLSELPCAFMFN-STGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 90
             G  ++  PC++    S   ++ G   SP +PG YP+D  C Y F G +++R++L F  FD
Sbjct:   371 GIPIAGSPCSYTITPSMSVNKTGALISPTYPGAYPKDMSCTYQFLGESNQRVRLEFRDFD 430

Query:    91 V 91
             +
Sbjct:   431 L 431

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00002977 lev-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 121 (47.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 28/70 (40%), Positives = 37/70 (52%)

Query:    25 TNFGINTGHQL-SELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIK 83
             T+FG+ TG  L +   C F F S+     G F SP +P  YP DT C Y+  G+  + I 
Sbjct:   474 TDFGV-TGESLGTSNECKFRFTSS----TGFFNSPRYPANYPLDTNCTYYIVGQPGKEIL 528

Query:    84 LVFESFDVEG 93
             L FE F + G
Sbjct:   529 LHFEQFALSG 538

GO:0016021 "integral to membrane" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0043196 "varicosity" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0016020 "membrane" evidence=IDA

MGI|MGI:3045328 Cdcp2 "CUB domain containing protein 2" [Mus musculus (taxid:10090)]

 Score = 104 (41.7 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query:    52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
             +G F+SPNFP LYP +TEC +         + L F +FD+E
Sbjct:    38 SGNFSSPNFPSLYPYNTECSWLIVVAEGSSVLLTFHAFDLE 78

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5VXM1 CDCP2 "CUB domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query:    52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
             +G F+SPNFP LYP +TEC +         + L F +FD+E
Sbjct:    38 SGNFSSPNFPRLYPYNTECSWLIVVAEGSSVLLTFHAFDLE 78

GO:0005576 "extracellular region" evidence=IEA

FB|FBgn0004885 tok "tolkin" [Drosophila melanogaster (taxid:7227)]

 Score = 107 (42.7 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query:    32 GHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
             GH   E  C +  ++  G    T  SPN+P  YP + +C + F      RIKL+F  FDV
Sbjct:  1150 GHDCKEGECKYEISAPFG----TIFSPNYPDSYPPNADCVWHFITTPGHRIKLIFNEFDV 1205

Query:    92 E 92
             E
Sbjct:  1206 E 1206

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007415 "defasciculation of motor neuron axon" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

RGD|1559756 Tll2 "tolloid-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query:    32 GHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
             GH   E  CA+  +S      GT  SPN+P  YP   EC +        R+K+ F  F+V
Sbjct:   710 GHDCKEAGCAYKISSA----EGTLMSPNWPDKYPSRKECTWNISSTAGHRVKITFSEFEV 765

Query:    92 E 92
             E
Sbjct:   766 E 766

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1MKV7 CUBN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query:    52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
             +GTFTSPNFPG YP + EC Y     + ++I L F +F +E
Sbjct:  1052 SGTFTSPNFPGFYPNNLECIYRITVESSQQIALHFTNFSLE 1092

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005903 "brush border" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1M999 Bmp1 "Protein Bmp1" [Rattus norvegicus (taxid:10116)]

 Score = 104 (41.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 23/63 (36%), Positives = 28/63 (44%)

Query:    33 HQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
             H   E  C     ST    +GT TSPN+P  YP   EC +        R+KL F   D+E
Sbjct:   743 HDCKEAGCEHKVTST----SGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFVEMDIE 798

Query:    93 GVP 95
               P
Sbjct:   799 SQP 801

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1M798 Bmp1 "Protein Bmp1" [Rattus norvegicus (taxid:10116)]

 Score = 104 (41.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 23/63 (36%), Positives = 28/63 (44%)

Query:    33 HQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
             H   E  C     ST    +GT TSPN+P  YP   EC +        R+KL F   D+E
Sbjct:   744 HDCKEAGCEHKVTST----SGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFVEMDIE 799

Query:    93 GVP 95
               P
Sbjct:   800 SQP 802

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93212	SOL1_CAEEL	No assigned EC number	0.5370	0.5520	0.0892	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	1e-10
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	3e-10
pfam00431	110	pfam00431, CUB, CUB domain	1e-08

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
          GT TSPN+P  YP + +C +        RI+L F  FD+E 
Sbjct: 1  GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLES 41

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 49 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
             +GT +SPN+P  YP +  C +        RI+L FE FD+E 
Sbjct: 7  ASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES 51

Length = 113

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
          +G+ TSPN+P  YP + +C +        RI L F+ FD+E 
Sbjct: 9  SGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLED 50

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.5
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.39
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.35
KOG4292|consensus	454		98.5
KOG4586|consensus	156		98.13
KOG4292|consensus	454		97.21
PF02408	120	CUB_2: CUB-like domain; InterPro: IPR003366 This d	93.17

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.50  E-value=7.9e-14  Score=83.58  Aligned_cols=51  Identities=33%  Similarity=0.741  Sum_probs=44.4

Q ss_pred             CCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        40 C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      |++.+...    .|.|.||+||..|+.+..|.|.|+++++++|.|+|..|+|+..
T Consensus         1 Cg~~~~~~----~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~   51 (110)
T PF00431_consen    1 CGGRLTNN----SGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESS   51 (110)
T ss_dssp             SEEEECSS----EEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--T
T ss_pred             CcCEEECC----eEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceee
Confidence            78887777    9999999999999999999999999999999999999999854

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.39  E-value=1.4e-12  Score=78.32  Aligned_cols=51  Identities=35%  Similarity=0.749  Sum_probs=45.8

Q ss_pred             CCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeec
Q psy12370         40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG   93 (96)
Q Consensus        40 C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~   93 (96)
                      |++.+...   ..|.|.||+||..|+++.+|.|.|+++++.+|.|.|.+|+++.
T Consensus         1 C~~~~~~~---~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~   51 (113)
T cd00041           1 CGGTLTAS---TSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES   51 (113)
T ss_pred             CCCEEccC---CCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc
Confidence            67776653   4899999999999999999999999999999999999999973

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.35  E-value=3e-12  Score=76.11  Aligned_cols=42  Identities=40%  Similarity=0.778  Sum_probs=39.7

Q ss_pred             eEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        53 g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      |.|.||+||..||++..|.|.|+++++.+|.|+|.+|+|+..
T Consensus         1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~   42 (102)
T smart00042        1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESS   42 (102)
T ss_pred             CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCC
Confidence            689999999999999999999999999999999999999754

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>KOG4292|consensus

Probab=98.50  E-value=2.3e-07  Score=68.35  Aligned_cols=52  Identities=23%  Similarity=0.552  Sum_probs=46.7

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      -..|+.+++..    .|.+.||+||..|+++..|+|++.++.++.|.|.|+.+-++
T Consensus       289 ~~~C~~~~~~~----~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~  340 (454)
T KOG4292|consen  289 ISDCNRTYHGK----FGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIE  340 (454)
T ss_pred             ccccccceecc----eeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccch
Confidence            46799888877    89999999999999999999999999999999988776554

>KOG4586|consensus

Probab=98.13  E-value=6.9e-06  Score=51.73  Aligned_cols=43  Identities=33%  Similarity=0.686  Sum_probs=39.2

Q ss_pred             eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEE-eEEEeec
Q psy12370         51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDVEG   93 (96)
Q Consensus        51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f-~~f~le~   93 (96)
                      +.+.++||+||..||++.+|...|.+..-+-|.+.| +.|.||+
T Consensus        48 n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEp   91 (156)
T KOG4586|consen   48 NFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEP   91 (156)
T ss_pred             ccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecc
Confidence            478899999999999999999999999999999999 5678875

>KOG4292|consensus

Probab=97.21  E-value=0.00027  Score=52.48  Aligned_cols=43  Identities=19%  Similarity=0.414  Sum_probs=39.4

Q ss_pred             eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeec
Q psy12370         51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG   93 (96)
Q Consensus        51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~   93 (96)
                      ..|.+.+|+||-.|.++.-|.|.|.+++++++.|++..+++..
T Consensus       177 ~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~p  219 (454)
T KOG4292|consen  177 NSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAP  219 (454)
T ss_pred             ccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCc
Confidence            4599999999999999999999999999999999999887653

>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins

Probab=93.17  E-value=0.2  Score=30.76  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             CCCCCceeEEEEEeCCCCEEEEEEe
Q psy12370         63 LYPRDTECHYFFYGRNDERIKLVFE   87 (96)
Q Consensus        63 ~yp~~~~C~w~I~~~~g~~I~L~f~   87 (96)
                      .+|.+..|.|.|.+|.|.-++|.+.
T Consensus        37 ~~p~n~~C~y~i~iP~G~~a~v~~~   61 (120)
T PF02408_consen   37 QFPANQNCTYQINIPKGYYAKVTLS   61 (120)
T ss_pred             ccCCCCceEEEEEcCCceEEEEEEE
Confidence            4788889999999999999988774

The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
2qqm_A	450	Crystal Structure Of The A2b1b2 Domains From Human		4e-04
4gz9_A	577	Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2		4e-04

>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-1 Length = 450

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          +G   SP FP  YP   EC Y  +      I L FESFD+E
Sbjct: 19 SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 59

>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2) Length = 577

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 53  GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
           G   SP FP  YP   EC Y  +      I L FESFD+E
Sbjct: 138 GVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLE 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
3dem_A	278	Complement factor MAsp-3; complement system, innat	1e-11
3dem_A	278	Complement factor MAsp-3; complement system, innat	6e-09
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-11
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	2e-11
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	7e-11
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	9e-09
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	2e-08
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	2e-11
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	3e-11
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	1e-10
1nzi_A	159	Complement C1S component; calcium, innate immunity	6e-11
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	7e-11
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	1e-08
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	9e-11
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-10
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	2e-08
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	2e-10
1szb_A	170	Mannose binding lectin-associated serine protease-	2e-10
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	3e-06
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	1e-05
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	5e-05

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
            G   SP +P  YP D+E  +     +  RIKL F  F++E 
Sbjct: 8  MFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES 50

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 51  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDVEGVP 95
           R G  TSP+FP  YP+ +EC Y         + L FE  FD+E  P
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP 219

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
          NGT  SP FP  YP + +C +    +    I L F  FD+E  P 
Sbjct: 16 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPL 60

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 30  NTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESF 89
            +G        +          +GTF SPN+P  Y   +EC+++    +    +L F+ F
Sbjct: 220 RSGFSAYWDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDF 279

Query: 90  DVEGVP 95
            +E  P
Sbjct: 280 HLEHHP 285

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 55.7 bits (134), Expect = 7e-11
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
            GT  SP  P +YP    C +    + +  I L+FE+F +E
Sbjct: 8  STGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLE 49

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 49.9 bits (119), Expect = 9e-09
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 43  MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
                     G   S  +P  Y  +  C++         +   F +FD+E 
Sbjct: 348 ENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEH 398

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 20/58 (34%), Positives = 26/58 (44%)

Query: 36  SELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
             +  A           GTFTSPNFP  YP + EC Y    R  + I + F +F +E 
Sbjct: 109 EAISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEE 166

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 57.4 bits (138), Expect = 2e-11
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          +G   SP FP  YP   EC Y  +      I L FESFD+E
Sbjct: 19 SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 59

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
           G   SP FP  Y    +  +        R++L F  F++E 
Sbjct: 8  FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLEL 49

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 30  NTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ES 88
              HQ      A         R+G  +SP +P  YP+ + C Y         I L F ES
Sbjct: 152 YILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVES 211

Query: 89  FDVEGVP 95
           FDVE  P
Sbjct: 212 FDVEMHP 218

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 54.4 bits (131), Expect = 6e-11
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
           G   SPN+P  YP + E  +         I L F   D+E
Sbjct: 5  YGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIE 45

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 55.8 bits (134), Expect = 7e-11
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
           G   SP +P  YP D+E  +     +  RIKL F  F++E 
Sbjct: 9  FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES 50

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 51  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDVEGVP 95
           R G  TSP+FP  YP+ +EC Y         + L FE  FD+E  P
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP 219

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score = 53.5 bits (129), Expect = 9e-11
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVP 95
              F SP FP  Y  +  C++    +  +RI L F  FD+E  P
Sbjct: 14 PKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDP 58

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 52  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
           NGT  SP FP  YP + +C +    +    I L F  FD+E  P 
Sbjct: 135 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPL 179

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFESFDVE 92
           G  TSP +P  YP    C +  Y     ++I L F      
Sbjct: 15 AGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEI 56

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDVEGVP 95
          R GT TSP++P  YP+ +EC Y         + L F + FD+E  P
Sbjct: 12 RTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP 57

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
           G   SP FPG Y  D E  +        R++L F  FD+E 
Sbjct: 12 FGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLEL 53

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 5/41 (12%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
           GT  +   P      TEC +        ++ +   + ++ 
Sbjct: 14 YGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT 49

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 4/41 (9%), Positives = 13/41 (31%), Gaps = 5/41 (12%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          +G   +      Y   T C +      +  +++  +   + 
Sbjct: 18 SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN 53

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 3/41 (7%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          +G+ ++ +          C +    + D+++++     ++ 
Sbjct: 17 SGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.64
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.6
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.57
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.55
1szb_A	170	Mannose binding lectin-associated serine protease-	99.51
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.5
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.47
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.46
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.43
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.43
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.4
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.38
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.38
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.36
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.35
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.34
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.33
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.3
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.3
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.26
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.22

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.64  E-value=8.5e-16  Score=97.51  Aligned_cols=54  Identities=30%  Similarity=0.566  Sum_probs=50.5

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ...|++.+...    .|.|.||+||..||++.+|.|.|+++.+++|.|+|.+|+||..
T Consensus         4 ~~~Cgg~l~~~----~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~   57 (149)
T 2wno_A            4 AKECGGVFTDP----KQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD   57 (149)
T ss_dssp             CSCCCEEECSS----EEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred             CCCCCCEEECC----ceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCC
Confidence            45799999887    8999999999999999999999999999999999999999863

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.60  E-value=6.8e-16  Score=93.59  Aligned_cols=53  Identities=34%  Similarity=0.667  Sum_probs=47.4

Q ss_pred             CCCCcEE-ecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEe-EEEeecC
Q psy12370         38 LPCAFMF-NSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDVEGV   94 (96)
Q Consensus        38 ~~C~~~~-~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~-~f~le~~   94 (96)
                      ..|++.+ ...    .|.|.||+||..||++.+|.|.|+++++++|.|+|. .|+||..
T Consensus         2 ~~Cgg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~   56 (115)
T 3poj_A            2 VECSGNLFTQR----TGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH   56 (115)
T ss_dssp             -CEEEEEECSS----EEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC
T ss_pred             eECCCceEcCC----CEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC
Confidence            4688885 555    899999999999999999999999999999999999 5999864

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.57  E-value=5.1e-15  Score=102.05  Aligned_cols=74  Identities=32%  Similarity=0.561  Sum_probs=60.3

Q ss_pred             cceEEec-CCCeEEEcceeeecccccccccccccCCCCcE-EecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEE
Q psy12370          5 LNAQRCS-ANGFLLVKPSLLGTNFGINTGHQLSELPCAFM-FNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERI   82 (96)
Q Consensus         5 ~~~~~c~-~~g~~~~~~~~f~~~~~~~~~~~~~~~~C~~~-~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I   82 (96)
                      ++.+.|+ ..||.+..           .... ....|++. +...    .|.|.||+||..||++..|.|.|++++|++|
T Consensus       141 ~g~~~csC~~Gy~L~~-----------d~~~-C~~~Cg~~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I  204 (286)
T 1nt0_A          141 LGGYYCSCRVGYILHQ-----------NKHT-CSALCSGQVFTGR----SGFLSSPEYPQPYPKLSSCAYNIRLEEGFSI  204 (286)
T ss_dssp             TTEEEEECCTTEEECT-----------TSSC-EEECCEEEEECSS----SEEEECTTTTSCCCSSCEEEEEEECCSSCEE
T ss_pred             cCceEeecCCCceecc-----------CCCC-ccccccCceecCC----ceEEeCCCCCCCCCCCCEEEEEEECCCceEE
Confidence            4567777 78888872           2222 24579987 5655    8999999999999999999999999999999


Q ss_pred             EEEEe-EEEeecC
Q psy12370         83 KLVFE-SFDVEGV   94 (96)
Q Consensus        83 ~L~f~-~f~le~~   94 (96)
                      .|+|. +|+||..
T Consensus       205 ~l~f~~~f~le~~  217 (286)
T 1nt0_A          205 TLDFVESFDVEMH  217 (286)
T ss_dssp             EEEECSCCBBCCC
T ss_pred             EEEEeceEEeccC
Confidence            99995 8999864

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.55  E-value=6.7e-15  Score=100.81  Aligned_cols=74  Identities=30%  Similarity=0.613  Sum_probs=59.7

Q ss_pred             cceEEec-CCCeEEEcceeeecccccccccccccCCCCcEE-ecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEE
Q psy12370          5 LNAQRCS-ANGFLLVKPSLLGTNFGINTGHQLSELPCAFMF-NSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERI   82 (96)
Q Consensus         5 ~~~~~c~-~~g~~~~~~~~f~~~~~~~~~~~~~~~~C~~~~-~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I   82 (96)
                      ++++.|+ +.||.++.           .... ....|++.+ ...    .|.|.||+||..||++..|.|.|+++.+++|
T Consensus       142 ~g~~~C~C~~Gy~l~~-----------d~~~-C~~~Cgg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i  205 (278)
T 3dem_A          142 IGGYYCSCRFGYILHT-----------DNRT-CRVECSDNLFTQR----TGVITSPDFPNPYPKSSECLYTIELEEGFMV  205 (278)
T ss_dssp             TTEEEEECCTTCEECT-----------TSSC-EECCCCCCCBCSS----EEEEESTTTTSCCCSSCEEEEEEECCTTCCE
T ss_pred             cCCcEEEeCCcceecc-----------CCCC-CcccCCCceecCC----ccceeCCCCCCCCCCcCeEEEEEEeCCCcEE
Confidence            4567777 77888762           2222 346788753 555    8999999999999999999999999999999


Q ss_pred             EEEEeE-EEeecC
Q psy12370         83 KLVFES-FDVEGV   94 (96)
Q Consensus        83 ~L~f~~-f~le~~   94 (96)
                      .|+|.+ |+||..
T Consensus       206 ~l~f~~~f~le~~  218 (278)
T 3dem_A          206 NLQFEDIFDIEDH  218 (278)
T ss_dssp             EEEECSCCBBCCC
T ss_pred             EEEEccccccccC
Confidence            999997 999864

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.51  E-value=3.3e-14  Score=91.45  Aligned_cols=44  Identities=34%  Similarity=0.585  Sum_probs=41.9

Q ss_pred             eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ..|.|.||+||..||++.+|.|.|+++.+++|.|+|.+|+||..
T Consensus        11 ~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~   54 (170)
T 1szb_A           11 VFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS   54 (170)
T ss_dssp             CEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCC
Confidence            38999999999999999999999999999999999999999864

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.50  E-value=4.3e-14  Score=89.75  Aligned_cols=44  Identities=30%  Similarity=0.447  Sum_probs=41.9

Q ss_pred             eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ..|.|.||+||..||++..|.|.|+++.+++|.|+|.+|+||..
T Consensus         4 ~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~   47 (159)
T 1nzi_A            4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS   47 (159)
T ss_dssp             SEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCC
Confidence            48999999999999999999999999999999999999999864

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=100.28  Aligned_cols=53  Identities=36%  Similarity=0.658  Sum_probs=49.6

Q ss_pred             CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ..|++.+...    .|.|.||+||..||++..|.|.|++++|++|.|.|.+|+||..
T Consensus         6 ~~Cg~~l~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~   58 (460)
T 2qqo_A            6 EDCSKNFTSP----NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD   58 (460)
T ss_dssp             -CCCEEECSS----EEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred             CCCCCEEeCC----ceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccc
Confidence            4699999887    8999999999999999999999999999999999999999864

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.46  E-value=9.6e-14  Score=100.87  Aligned_cols=54  Identities=35%  Similarity=0.698  Sum_probs=50.3

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ...|++.+...    .|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||..
T Consensus         8 ~~~Cg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~   61 (450)
T 2qqm_A            8 GPECSQNYTTP----SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD   61 (450)
T ss_dssp             -CTTCEEECSS----EEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred             CCCCCCeEeCC----cEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEec
Confidence            45799999887    8999999999999999999999999999999999999999864

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.43  E-value=2.7e-13  Score=95.72  Aligned_cols=43  Identities=35%  Similarity=0.605  Sum_probs=41.6

Q ss_pred             eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      .|.|.||+||++||++.+|.|.|++++|++|.|+|.+|+||..
T Consensus         9 ~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~   51 (361)
T 4aqb_A            9 FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS   51 (361)
T ss_dssp             EEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             eEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCC
Confidence            8999999999999999999999999999999999999999864

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.43  E-value=8.8e-13  Score=98.33  Aligned_cols=53  Identities=36%  Similarity=0.658  Sum_probs=47.8

Q ss_pred             CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ..|++.+...    .|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus       125 ~~Cg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~  177 (579)
T 2qqk_A          125 EDCSKNFTSP----NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD  177 (579)
T ss_dssp             CCCCCEECCS----EEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC---
T ss_pred             ccccceeccC----CceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecc
Confidence            4599999887    9999999999999999999999999999999999999999864

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.40  E-value=5.5e-13  Score=91.25  Aligned_cols=43  Identities=35%  Similarity=0.605  Sum_probs=41.5

Q ss_pred             eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      .|.|.||+||..||++..|.|.|+++++++|.|+|.+|+||..
T Consensus         9 ~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~   51 (278)
T 3dem_A            9 FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS   51 (278)
T ss_dssp             EEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCC
Confidence            8999999999999999999999999999999999999999863

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.38  E-value=9.2e-13  Score=98.50  Aligned_cols=53  Identities=36%  Similarity=0.720  Sum_probs=49.3

Q ss_pred             CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ..|++.+...    .|.|.||+||..||++.+|.|.|.+++|++|.|.|.+|+||..
T Consensus       127 ~~C~~~~~~~----~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~  179 (577)
T 4gz9_A          127 PECSQNYTAP----TGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQD  179 (577)
T ss_dssp             CEEEEEECSS----EEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred             cccceeecCC----CccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeec
Confidence            3588888887    9999999999999999999999999999999999999999854

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.38  E-value=1e-12  Score=92.74  Aligned_cols=74  Identities=30%  Similarity=0.566  Sum_probs=57.4

Q ss_pred             cceEEec-CCCeEEEcceeeecccccccccccccCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEE
Q psy12370          5 LNAQRCS-ANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIK   83 (96)
Q Consensus         5 ~~~~~c~-~~g~~~~~~~~f~~~~~~~~~~~~~~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~   83 (96)
                      .+.+.|+ ..|+.+.           ..........|++.+...    .|.|.||+||.+||++.+|.|.|.++.|++|.
T Consensus       142 ~g~~~csC~~g~~l~-----------~~~~~~~~~~c~~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~  206 (361)
T 4aqb_A          142 IGGYYCSCRFGYILH-----------TDNRTCRVECSDNLFTQR----TGVITSPDFPNPYPKSSECLYTIELEEGFMVN  206 (361)
T ss_dssp             TTEEEEECCTTCEEC-----------TTSSCEECCCCCCCBCSS----EEEEESTTTTSCCCSSCEEEEEEECCTTCEEE
T ss_pred             CCCceeccCCCeEEe-----------ccccccccccccceEeCC----CcEEecCCCCCCCCCCceeeEEeeeccCcEEE
Confidence            3455666 5666665           223333445677777776    99999999999999999999999999999999


Q ss_pred             EEEeE-EEeec
Q psy12370         84 LVFES-FDVEG   93 (96)
Q Consensus        84 L~f~~-f~le~   93 (96)
                      |+|.+ |++|.
T Consensus       207 l~f~~~~~~e~  217 (361)
T 4aqb_A          207 LQFEDIFDIED  217 (361)
T ss_dssp             EEECSCCBBCC
T ss_pred             EEEeecccccC
Confidence            99976 56654

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.36  E-value=1.4e-12  Score=89.84  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=41.5

Q ss_pred             eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      .|.|.||+||..||++..|.|.|++++|++|.|.|.+|+||..
T Consensus         8 ~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~   50 (286)
T 1nt0_A            8 FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS   50 (286)
T ss_dssp             EEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCC
Confidence            8999999999999999999999999999999999999999863

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.35  E-value=1.6e-12  Score=94.42  Aligned_cols=54  Identities=28%  Similarity=0.591  Sum_probs=50.4

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ...|++.+...    .|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||..
T Consensus       231 ~~~Cg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~  284 (457)
T 3kq4_B          231 STGCGGNLTTS----SGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH  284 (457)
T ss_dssp             CCCCEECCCSS----EEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCC
T ss_pred             cCCCCCeEccC----cceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCC
Confidence            46799998877    9999999999999999999999999999999999999999863

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.34  E-value=3.8e-12  Score=76.59  Aligned_cols=47  Identities=13%  Similarity=0.199  Sum_probs=43.2

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      ...|++.+...    .|.|.||     ||++.+|.|.|++++|++|.|+|.+|+++
T Consensus         3 ~~~Cgg~l~~~----~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~   49 (109)
T 1spp_A            3 YHACGGRLTDD----YGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNLT   49 (109)
T ss_dssp             ECSSCEEEECS----EEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEECC
T ss_pred             ccCCCCEEeCC----cEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeecc
Confidence            35799999987    8999998     88999999999999999999999999985

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.33  E-value=4.9e-13  Score=97.10  Aligned_cols=51  Identities=29%  Similarity=0.677  Sum_probs=48.3

Q ss_pred             CCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        40 C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      |++.+...    .|.|.||+||+.||++.+|.|.|++++|++|.|+|.+|+||..
T Consensus         1 CGg~l~~~----~G~i~SP~yP~~Y~~~~~C~w~I~~~~g~~i~L~f~~f~le~~   51 (457)
T 3kq4_B            1 CGEILTES----TGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH   51 (457)
T ss_dssp             CCCEECSS----EEECCCSSTTSCCCSSCCCEEEEECCSSEEEEECCSCCCCCCC
T ss_pred             CCCeEecC----CEEEeCCCCCCCCCCCCcEEEEEEcCCCCEEEEEEEeeecccC
Confidence            88988877    9999999999999999999999999999999999999999853

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.30  E-value=7.6e-12  Score=75.71  Aligned_cols=48  Identities=10%  Similarity=0.324  Sum_probs=43.6

Q ss_pred             ccCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         36 SELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        36 ~~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      ....|++.+...    .|.|.||     ||++.+|.|.|++++|++|.|+|.+|+|+
T Consensus         6 ~~~~Cgg~l~~~----~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l~   53 (114)
T 1sfp_A            6 RNTNCGGILKEE----SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN   53 (114)
T ss_dssp             EECSSCEEECCS----EEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             cCCCCCCeEECC----cEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeeee
Confidence            356899999887    8999997     78899999999999999999999999985

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.30  E-value=6.5e-12  Score=76.28  Aligned_cols=47  Identities=11%  Similarity=0.381  Sum_probs=43.3

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      ...|++.+...    .|.|.||     ||++.+|.|.|++++|++|.|+|.+|+|+
T Consensus         6 ~~~Cgg~l~~~----~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~   52 (116)
T 1spp_B            6 PDECGRVIKDT----SGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA   52 (116)
T ss_dssp             GGGTTEEECCS----EEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             CCCCCCEEeCC----ceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc
Confidence            45799999887    8999998     88899999999999999999999999985

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.26  E-value=5.2e-12  Score=94.42  Aligned_cols=53  Identities=26%  Similarity=0.557  Sum_probs=46.4

Q ss_pred             CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCC-CEEEEEEe-EEEeec
Q psy12370         38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFE-SFDVEG   93 (96)
Q Consensus        38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g-~~I~L~f~-~f~le~   93 (96)
                      ..||+.+...   ..|.|.||+||..||++.+|.|.|+++.+ ++|.|.|. .|+||.
T Consensus         7 ~~CGg~l~~~---~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~   61 (577)
T 4gz9_A            7 DKCGGTIKIE---NPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLED   61 (577)
T ss_dssp             CCSSEEEECS---SCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCC
T ss_pred             CCCCCEEEcC---CCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecC
Confidence            4699998864   36999999999999999999999999876 68999996 788874

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.22  E-value=1.5e-11  Score=91.78  Aligned_cols=54  Identities=33%  Similarity=0.755  Sum_probs=46.9

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCC-CCEEEEEEe-EEEeec
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRN-DERIKLVFE-SFDVEG   93 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~-g~~I~L~f~-~f~le~   93 (96)
                      ...|++.+...   ..|.|.||+||..||++..|.|.|.++. +++|.|.|. +|+||.
T Consensus         3 ~~~Cgg~~~~~---~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~   58 (579)
T 2qqk_A            3 DPPCGGRLNSK---DAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK   58 (579)
T ss_dssp             --CCCEEEETT---SCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC
T ss_pred             CCCCCCEEEeC---CCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc
Confidence            45799999862   2799999999999999999999999996 679999999 899985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d2qqma3	108	b.23.1.1 (A:156-263) Mannose-binding protein assoc	1e-06
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	4e-06
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	6e-06
d1nt0a2	114	b.23.1.1 (A:165-278) Mannose-binding protein assoc	5e-05

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-06
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          G   SP FP  YP   EC Y  +      I L FESFD+E
Sbjct: 1  GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 40

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
          G   SPN+P  YP + E  +         I L F   D+
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDI 44

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 6e-06
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
          G   SP FPG Y  D E  +        R++L F  FD+E
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLE 50

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF 86
          R+G  +SP +P  YP+ + C Y         I L F
Sbjct: 9  RSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDF 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1szba1	121	Mannose-binding protein associated serine protease	99.56
d1nt0a2	114	Mannose-binding protein associated serine protease	99.55
d2qqma3	108	Mannose-binding protein associated serine protease	99.55
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.54
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.35
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.33
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.24

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-15  Score=89.30  Aligned_cols=44  Identities=34%  Similarity=0.585  Sum_probs=41.9

Q ss_pred             eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      ..|.|+||+||..||++.+|.|.|+++.+++|.|+|.+|+||..
T Consensus         9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~p~g~~I~l~f~~fdle~~   52 (121)
T d1szba1           9 VFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS   52 (121)
T ss_dssp             CEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CCeEEeCCCCCCCCCCCCeEEEEEEeCCCceeEEEeeeeeeeee
Confidence            48999999999999999999999999999999999999999864

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.7e-15  Score=89.45  Aligned_cols=51  Identities=33%  Similarity=0.533  Sum_probs=44.6

Q ss_pred             CCcEEe-cCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEe-EEEeecC
Q psy12370         40 CAFMFN-STGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDVEGV   94 (96)
Q Consensus        40 C~~~~~-~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~-~f~le~~   94 (96)
                      |++.+. ..    .|.|.||+||..||++.+|.|.|++++|++|.|+|. .|+||..
T Consensus         1 Cgg~~~~~~----~G~i~SP~yP~~Y~~~~~C~w~I~~p~g~~i~l~F~~~f~le~~   53 (114)
T d1nt0a2           1 CSGQVFTGR----SGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH   53 (114)
T ss_dssp             CEEEEECSS----SEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC
T ss_pred             CcCCcCcCC----CEEEECCCCCCCCCCCCeEEEEEEeCCCCceeeEEeeeeccccc
Confidence            788643 44    899999999999999999999999999999999994 5888743

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.5e-15  Score=87.60  Aligned_cols=42  Identities=43%  Similarity=0.799  Sum_probs=40.0

Q ss_pred             eEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        53 g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      |.|+||+||..||++..|.|.|+++.+++|.|+|.+|+|+..
T Consensus         1 G~i~SP~yP~~Y~~~~~C~w~I~~p~~~~I~l~f~~f~l~~~   42 (108)
T d2qqma3           1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD   42 (108)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred             CEEeCCCCCCCCCCCCeEEEEEEeCCCceeeeEEEEEEeecc
Confidence            789999999999999999999999999999999999999753

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-15  Score=87.81  Aligned_cols=43  Identities=30%  Similarity=0.471  Sum_probs=41.3

Q ss_pred             eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370         52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV   94 (96)
Q Consensus        52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~   94 (96)
                      .|.|+||+||+.||++..|.|.|+++++++|.|+|.+|+||..
T Consensus         5 ~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~l~f~~f~le~~   47 (117)
T d1nzia1           5 YGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS   47 (117)
T ss_dssp             EEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeeEeee
Confidence            7999999999999999999999999999999999999999853

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=8e-13  Score=78.56  Aligned_cols=47  Identities=11%  Similarity=0.371  Sum_probs=43.1

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      ...||+.+...    .|.|.||+||+.|     |.|.|+++++++|.|+|.+|+++
T Consensus         6 ~~~CGg~l~~~----~G~i~SP~~P~~~-----C~W~I~~p~~~~I~l~f~~f~~~   52 (112)
T d1sppb_           6 PDECGRVIKDT----SGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA   52 (112)
T ss_dssp             GGGTTEEECCS----EEEEECCSSCCSE-----EEEEEECCTTCEEEEEEEEEECC
T ss_pred             CCcCCCEEeCC----cceEeCCCCCCCc-----eEEEEecCCcEEEEEEEEehhcc
Confidence            45799999887    9999999999776     99999999999999999999986

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=2.3e-12  Score=76.02  Aligned_cols=46  Identities=15%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      ..|++.+.+.    .|.|.||+||     +.+|.|.|+++++++|.|.|.+|+++
T Consensus         4 ~~Cgg~l~~~----~G~i~Sp~yP-----~~~C~W~I~~p~g~~I~l~f~~f~~~   49 (109)
T d1sppa_           4 HACGGRLTDD----YGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT   49 (109)
T ss_dssp             CSSCEEEECS----EEEEECCCSS-----CSEEEEEEECCTTSEEEEEEEEEECC
T ss_pred             ccCCCEEeCC----CEEEeCCCCC-----CCcEEEEEEEccCceeEEEEeccccc
Confidence            4599999988    8999999998     35899999999999999999999986

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=1.2e-11  Score=72.91  Aligned_cols=47  Identities=11%  Similarity=0.332  Sum_probs=42.4

Q ss_pred             cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370         37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE   92 (96)
Q Consensus        37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le   92 (96)
                      .+.|++.+...    .|.|.||     |+++.+|.|.|.++.|++|.|+|.+|+++
T Consensus         4 ~~~Cgg~lt~~----~G~i~SP-----y~~~~~C~w~I~~p~g~~I~l~f~~f~~~   50 (111)
T d1sfpa_           4 NTNCGGILKEE----SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN   50 (111)
T ss_dssp             ECSSCEEECCS----EEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             ccCCCcEEECC----ceeEcCC-----CCCCCcEEEEEEcCCCceeeEEEeecccc
Confidence            36899999887    8999998     55688999999999999999999999986